Olga Bochkareva

Kondrashov Group

21 Publications

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[21]
2023 | Published | Journal Article | IST-REx-ID: 14716 | OA
Yurtseven, A., Buyanova, S., Agrawal, A. A. A., Bochkareva, O., & Kalinina, O. V. V. (2023). Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis. BMC Microbiology. Springer Nature. https://doi.org/10.1186/s12866-023-03147-7
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[20]
2022 | Published | Journal Article | IST-REx-ID: 11344 | OA
Dranenko, N., Tutukina, M., Gelfand, M., Kondrashov, F., & Bochkareva, O. (2022). Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia. Scientific Reports. Springer Nature. https://doi.org/10.1038/s41598-022-10827-3
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2022 | Published | Journal Article | IST-REx-ID: 10927 | OA
Zabelkin, A., Yakovleva, Y., Bochkareva, O., & Alexeev, N. (2022). PaReBrick: PArallel REarrangements and BReaks identification toolkit. Bioinformatics. Oxford Academic. https://doi.org/10.1093/bioinformatics/btab691
[Published Version] View | Files available | DOI | WoS
 
[18]
2021 | Published | Journal Article | IST-REx-ID: 9380 | OA
Seferbekova, Z., Zabelkin, A., Yakovleva, Y., Afasizhev, R., Dranenko, N. O., Alexeev, N., … Bochkareva, O. (2021). High rates of genome rearrangements and pathogenicity of Shigella spp. Frontiers in Microbiology. Frontiers. https://doi.org/10.3389/fmicb.2021.628622
[Published Version] View | Files available | DOI | WoS
 
[17]
2019 | Published | Journal Article | IST-REx-ID: 8263 | OA
Shelyakin, P. V., Bochkareva, O., Karan, A. A., & Gelfand, M. S. (2019). Micro-evolution of three Streptococcus species: Selection, antigenic variation, and horizontal gene inflow. BMC Evolutionary Biology. Springer Nature. https://doi.org/10.1186/s12862-019-1403-6
[Published Version] View | DOI | Download Published Version (ext.)
 
[16]
2019 | Published | Journal Article | IST-REx-ID: 6898 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. BMC Genomics. BioMed Central. https://doi.org/10.1186/s12864-019-6059-5
[Published Version] View | Files available | DOI | WoS
 
[15]
2019 | Research Data Reference | IST-REx-ID: 9731 | OA
Sigalova, O., Chaplin, A., Bochkareva, O., Shelyakin, P., Filaretov, V., Akkuratov, E., … Gelfand, M. S. (2019). Additional file 11 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808772.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[14]
2019 | Research Data Reference | IST-REx-ID: 9783 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 10 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808760.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[13]
2019 | Research Data Reference | IST-REx-ID: 9890 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808802.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[12]
2019 | Research Data Reference | IST-REx-ID: 9892 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808814.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[11]
2019 | Research Data Reference | IST-REx-ID: 9893 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808820.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[10]
2019 | Research Data Reference | IST-REx-ID: 9894 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 18 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808826.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[9]
2019 | Research Data Reference | IST-REx-ID: 9895 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 19 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808835.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[8]
2019 | Research Data Reference | IST-REx-ID: 9896 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 1 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808841.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[7]
2019 | Research Data Reference | IST-REx-ID: 9897 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 20 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808850.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[6]
2019 | Research Data Reference | IST-REx-ID: 9898 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 21 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808859.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[5]
2019 | Research Data Reference | IST-REx-ID: 9899 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 2 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808865.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[4]
2019 | Research Data Reference | IST-REx-ID: 9900 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 5 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808886.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[3]
2019 | Research Data Reference | IST-REx-ID: 9901 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808907.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[2]
2018 | Published | Journal Article | IST-REx-ID: 8262 | OA
Bochkareva, O., Moroz, E. V., Davydov, I. I., & Gelfand, M. S. (2018). Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp. BMC Genomics. Springer Nature. https://doi.org/10.1186/s12864-018-5245-1
[Published Version] View | DOI | Download Published Version (ext.)
 
[1]
2018 | Published | Journal Article | IST-REx-ID: 8265 | OA
Bochkareva, O., Dranenko, N. O., Ocheredko, E. S., Kanevsky, G. M., Lozinsky, Y. N., Khalaycheva, V. A., … Gelfand, M. S. (2018). Genome rearrangements and phylogeny reconstruction in Yersinia pestis. PeerJ. PeerJ. https://doi.org/10.7717/peerj.4545
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
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21 Publications

Mark all

[21]
2023 | Published | Journal Article | IST-REx-ID: 14716 | OA
Yurtseven, A., Buyanova, S., Agrawal, A. A. A., Bochkareva, O., & Kalinina, O. V. V. (2023). Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis. BMC Microbiology. Springer Nature. https://doi.org/10.1186/s12866-023-03147-7
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[20]
2022 | Published | Journal Article | IST-REx-ID: 11344 | OA
Dranenko, N., Tutukina, M., Gelfand, M., Kondrashov, F., & Bochkareva, O. (2022). Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia. Scientific Reports. Springer Nature. https://doi.org/10.1038/s41598-022-10827-3
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2022 | Published | Journal Article | IST-REx-ID: 10927 | OA
Zabelkin, A., Yakovleva, Y., Bochkareva, O., & Alexeev, N. (2022). PaReBrick: PArallel REarrangements and BReaks identification toolkit. Bioinformatics. Oxford Academic. https://doi.org/10.1093/bioinformatics/btab691
[Published Version] View | Files available | DOI | WoS
 
[18]
2021 | Published | Journal Article | IST-REx-ID: 9380 | OA
Seferbekova, Z., Zabelkin, A., Yakovleva, Y., Afasizhev, R., Dranenko, N. O., Alexeev, N., … Bochkareva, O. (2021). High rates of genome rearrangements and pathogenicity of Shigella spp. Frontiers in Microbiology. Frontiers. https://doi.org/10.3389/fmicb.2021.628622
[Published Version] View | Files available | DOI | WoS
 
[17]
2019 | Published | Journal Article | IST-REx-ID: 8263 | OA
Shelyakin, P. V., Bochkareva, O., Karan, A. A., & Gelfand, M. S. (2019). Micro-evolution of three Streptococcus species: Selection, antigenic variation, and horizontal gene inflow. BMC Evolutionary Biology. Springer Nature. https://doi.org/10.1186/s12862-019-1403-6
[Published Version] View | DOI | Download Published Version (ext.)
 
[16]
2019 | Published | Journal Article | IST-REx-ID: 6898 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. BMC Genomics. BioMed Central. https://doi.org/10.1186/s12864-019-6059-5
[Published Version] View | Files available | DOI | WoS
 
[15]
2019 | Research Data Reference | IST-REx-ID: 9731 | OA
Sigalova, O., Chaplin, A., Bochkareva, O., Shelyakin, P., Filaretov, V., Akkuratov, E., … Gelfand, M. S. (2019). Additional file 11 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808772.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[14]
2019 | Research Data Reference | IST-REx-ID: 9783 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 10 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808760.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[13]
2019 | Research Data Reference | IST-REx-ID: 9890 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808802.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[12]
2019 | Research Data Reference | IST-REx-ID: 9892 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808814.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[11]
2019 | Research Data Reference | IST-REx-ID: 9893 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808820.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[10]
2019 | Research Data Reference | IST-REx-ID: 9894 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 18 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808826.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[9]
2019 | Research Data Reference | IST-REx-ID: 9895 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 19 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808835.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[8]
2019 | Research Data Reference | IST-REx-ID: 9896 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 1 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808841.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[7]
2019 | Research Data Reference | IST-REx-ID: 9897 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 20 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808850.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[6]
2019 | Research Data Reference | IST-REx-ID: 9898 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 21 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808859.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[5]
2019 | Research Data Reference | IST-REx-ID: 9899 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 2 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808865.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[4]
2019 | Research Data Reference | IST-REx-ID: 9900 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 5 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808886.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[3]
2019 | Research Data Reference | IST-REx-ID: 9901 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808907.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[2]
2018 | Published | Journal Article | IST-REx-ID: 8262 | OA
Bochkareva, O., Moroz, E. V., Davydov, I. I., & Gelfand, M. S. (2018). Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp. BMC Genomics. Springer Nature. https://doi.org/10.1186/s12864-018-5245-1
[Published Version] View | DOI | Download Published Version (ext.)
 
[1]
2018 | Published | Journal Article | IST-REx-ID: 8265 | OA
Bochkareva, O., Dranenko, N. O., Ocheredko, E. S., Kanevsky, G. M., Lozinsky, Y. N., Khalaycheva, V. A., … Gelfand, M. S. (2018). Genome rearrangements and phylogeny reconstruction in Yersinia pestis. PeerJ. PeerJ. https://doi.org/10.7717/peerj.4545
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
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