Olga Bochkareva

Kondrashov Group

21 Publications

Mark all

[21]
2023 | Published | Journal Article | IST-REx-ID: 14716 | OA
Yurtseven, Alper, et al. “Machine Learning and Phylogenetic Analysis Allow for Predicting Antibiotic Resistance in M. Tuberculosis.” BMC Microbiology, vol. 23, no. 1, 404, Springer Nature, 2023, doi:10.1186/s12866-023-03147-7.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[20]
2022 | Published | Journal Article | IST-REx-ID: 11344 | OA
Dranenko, NO, et al. “Chromosome-Encoded IpaH Ubiquitin Ligases Indicate Non-Human Enteroinvasive Escherichia.” Scientific Reports, vol. 12, 6868, Springer Nature, 2022, doi:10.1038/s41598-022-10827-3.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2022 | Published | Journal Article | IST-REx-ID: 10927 | OA
Zabelkin, Alexey, et al. “PaReBrick: PArallel REarrangements and BReaks Identification Toolkit.” Bioinformatics, vol. 38, no. 2, Oxford Academic, 2022, pp. 357–63, doi:10.1093/bioinformatics/btab691.
[Published Version] View | Files available | DOI | WoS
 
[18]
2021 | Published | Journal Article | IST-REx-ID: 9380 | OA
Seferbekova, Zaira, et al. “High Rates of Genome Rearrangements and Pathogenicity of Shigella Spp.” Frontiers in Microbiology, vol. 12, 628622, Frontiers, 2021, doi:10.3389/fmicb.2021.628622.
[Published Version] View | Files available | DOI | WoS
 
[17]
2019 | Published | Journal Article | IST-REx-ID: 8263 | OA
Shelyakin, Pavel V., et al. “Micro-Evolution of Three Streptococcus Species: Selection, Antigenic Variation, and Horizontal Gene Inflow.” BMC Evolutionary Biology, vol. 19, 83, Springer Nature, 2019, doi:10.1186/s12862-019-1403-6.
[Published Version] View | DOI | Download Published Version (ext.)
 
[16]
2019 | Published | Journal Article | IST-REx-ID: 6898 | OA
Sigalova, Olga M., et al. “Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.” BMC Genomics, vol. 20, no. 1, 710, BioMed Central, 2019, doi:10.1186/s12864-019-6059-5.
[Published Version] View | Files available | DOI | WoS
 
[15]
2019 | Research Data Reference | IST-REx-ID: 9731 | OA
Sigalova, Olga, et al. Additional File 11 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808772.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[14]
2019 | Research Data Reference | IST-REx-ID: 9783 | OA
Sigalova, Olga M., et al. Additional File 10 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808760.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[13]
2019 | Research Data Reference | IST-REx-ID: 9890 | OA
Sigalova, Olga M., et al. Additional File 15 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808802.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[12]
2019 | Research Data Reference | IST-REx-ID: 9892 | OA
Sigalova, Olga M., et al. Additional File 16 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808814.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[11]
2019 | Research Data Reference | IST-REx-ID: 9893 | OA
Sigalova, Olga M., et al. Additional File 17 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808820.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[10]
2019 | Research Data Reference | IST-REx-ID: 9894 | OA
Sigalova, Olga M., et al. Additional File 18 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808826.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[9]
2019 | Research Data Reference | IST-REx-ID: 9895 | OA
Sigalova, Olga M., et al. Additional File 19 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808835.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[8]
2019 | Research Data Reference | IST-REx-ID: 9896 | OA
Sigalova, Olga M., et al. Additional File 1 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808841.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[7]
2019 | Research Data Reference | IST-REx-ID: 9897 | OA
Sigalova, Olga M., et al. Additional File 20 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808850.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[6]
2019 | Research Data Reference | IST-REx-ID: 9898 | OA
Sigalova, Olga M., et al. Additional File 21 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808859.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[5]
2019 | Research Data Reference | IST-REx-ID: 9899 | OA
Sigalova, Olga M., et al. Additional File 2 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808865.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[4]
2019 | Research Data Reference | IST-REx-ID: 9900 | OA
Sigalova, Olga M., et al. Additional File 5 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808886.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[3]
2019 | Research Data Reference | IST-REx-ID: 9901 | OA
Sigalova, Olga M., et al. Additional File 9 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808907.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[2]
2018 | Published | Journal Article | IST-REx-ID: 8262 | OA
Bochkareva, Olga, et al. “Genome Rearrangements and Selection in Multi-Chromosome Bacteria Burkholderia Spp.” BMC Genomics, vol. 19, 965, Springer Nature, 2018, doi:10.1186/s12864-018-5245-1.
[Published Version] View | DOI | Download Published Version (ext.)
 
[1]
2018 | Published | Journal Article | IST-REx-ID: 8265 | OA
Bochkareva, Olga, et al. “Genome Rearrangements and Phylogeny Reconstruction in Yersinia Pestis.” PeerJ, vol. 6, e4545, PeerJ, 2018, doi:10.7717/peerj.4545.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
Marked Publication(s)

Search

Filter Publications

Display / Sort

Citation Style: MLA

Export / Embed

Grants


21 Publications

Mark all

[21]
2023 | Published | Journal Article | IST-REx-ID: 14716 | OA
Yurtseven, Alper, et al. “Machine Learning and Phylogenetic Analysis Allow for Predicting Antibiotic Resistance in M. Tuberculosis.” BMC Microbiology, vol. 23, no. 1, 404, Springer Nature, 2023, doi:10.1186/s12866-023-03147-7.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[20]
2022 | Published | Journal Article | IST-REx-ID: 11344 | OA
Dranenko, NO, et al. “Chromosome-Encoded IpaH Ubiquitin Ligases Indicate Non-Human Enteroinvasive Escherichia.” Scientific Reports, vol. 12, 6868, Springer Nature, 2022, doi:10.1038/s41598-022-10827-3.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2022 | Published | Journal Article | IST-REx-ID: 10927 | OA
Zabelkin, Alexey, et al. “PaReBrick: PArallel REarrangements and BReaks Identification Toolkit.” Bioinformatics, vol. 38, no. 2, Oxford Academic, 2022, pp. 357–63, doi:10.1093/bioinformatics/btab691.
[Published Version] View | Files available | DOI | WoS
 
[18]
2021 | Published | Journal Article | IST-REx-ID: 9380 | OA
Seferbekova, Zaira, et al. “High Rates of Genome Rearrangements and Pathogenicity of Shigella Spp.” Frontiers in Microbiology, vol. 12, 628622, Frontiers, 2021, doi:10.3389/fmicb.2021.628622.
[Published Version] View | Files available | DOI | WoS
 
[17]
2019 | Published | Journal Article | IST-REx-ID: 8263 | OA
Shelyakin, Pavel V., et al. “Micro-Evolution of Three Streptococcus Species: Selection, Antigenic Variation, and Horizontal Gene Inflow.” BMC Evolutionary Biology, vol. 19, 83, Springer Nature, 2019, doi:10.1186/s12862-019-1403-6.
[Published Version] View | DOI | Download Published Version (ext.)
 
[16]
2019 | Published | Journal Article | IST-REx-ID: 6898 | OA
Sigalova, Olga M., et al. “Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.” BMC Genomics, vol. 20, no. 1, 710, BioMed Central, 2019, doi:10.1186/s12864-019-6059-5.
[Published Version] View | Files available | DOI | WoS
 
[15]
2019 | Research Data Reference | IST-REx-ID: 9731 | OA
Sigalova, Olga, et al. Additional File 11 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808772.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[14]
2019 | Research Data Reference | IST-REx-ID: 9783 | OA
Sigalova, Olga M., et al. Additional File 10 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808760.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[13]
2019 | Research Data Reference | IST-REx-ID: 9890 | OA
Sigalova, Olga M., et al. Additional File 15 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808802.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[12]
2019 | Research Data Reference | IST-REx-ID: 9892 | OA
Sigalova, Olga M., et al. Additional File 16 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808814.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[11]
2019 | Research Data Reference | IST-REx-ID: 9893 | OA
Sigalova, Olga M., et al. Additional File 17 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808820.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[10]
2019 | Research Data Reference | IST-REx-ID: 9894 | OA
Sigalova, Olga M., et al. Additional File 18 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808826.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[9]
2019 | Research Data Reference | IST-REx-ID: 9895 | OA
Sigalova, Olga M., et al. Additional File 19 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808835.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[8]
2019 | Research Data Reference | IST-REx-ID: 9896 | OA
Sigalova, Olga M., et al. Additional File 1 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808841.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[7]
2019 | Research Data Reference | IST-REx-ID: 9897 | OA
Sigalova, Olga M., et al. Additional File 20 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808850.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[6]
2019 | Research Data Reference | IST-REx-ID: 9898 | OA
Sigalova, Olga M., et al. Additional File 21 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808859.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[5]
2019 | Research Data Reference | IST-REx-ID: 9899 | OA
Sigalova, Olga M., et al. Additional File 2 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808865.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[4]
2019 | Research Data Reference | IST-REx-ID: 9900 | OA
Sigalova, Olga M., et al. Additional File 5 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808886.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[3]
2019 | Research Data Reference | IST-REx-ID: 9901 | OA
Sigalova, Olga M., et al. Additional File 9 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction. Springer Nature, 2019, doi:10.6084/m9.figshare.9808907.v1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[2]
2018 | Published | Journal Article | IST-REx-ID: 8262 | OA
Bochkareva, Olga, et al. “Genome Rearrangements and Selection in Multi-Chromosome Bacteria Burkholderia Spp.” BMC Genomics, vol. 19, 965, Springer Nature, 2018, doi:10.1186/s12864-018-5245-1.
[Published Version] View | DOI | Download Published Version (ext.)
 
[1]
2018 | Published | Journal Article | IST-REx-ID: 8265 | OA
Bochkareva, Olga, et al. “Genome Rearrangements and Phylogeny Reconstruction in Yersinia Pestis.” PeerJ, vol. 6, e4545, PeerJ, 2018, doi:10.7717/peerj.4545.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
Marked Publication(s)

Search

Filter Publications

Display / Sort

Citation Style: MLA

Export / Embed