Olga Bochkareva

Kondrashov Group

21 Publications

Mark all

[21]
2023 | Published | Journal Article | IST-REx-ID: 14716 | OA
A. Yurtseven, S. Buyanova, A. A. A. Agrawal, O. Bochkareva, and O. V. V. Kalinina, “Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis,” BMC Microbiology, vol. 23, no. 1. Springer Nature, 2023.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[20]
2022 | Published | Journal Article | IST-REx-ID: 11344 | OA
N. Dranenko, M. Tutukina, M. Gelfand, F. Kondrashov, and O. Bochkareva, “Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia,” Scientific Reports, vol. 12. Springer Nature, 2022.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2022 | Published | Journal Article | IST-REx-ID: 10927 | OA
A. Zabelkin, Y. Yakovleva, O. Bochkareva, and N. Alexeev, “PaReBrick: PArallel REarrangements and BReaks identification toolkit,” Bioinformatics, vol. 38, no. 2. Oxford Academic, pp. 357–363, 2022.
[Published Version] View | Files available | DOI | WoS
 
[18]
2021 | Published | Journal Article | IST-REx-ID: 9380 | OA
Z. Seferbekova et al., “High rates of genome rearrangements and pathogenicity of Shigella spp,” Frontiers in Microbiology, vol. 12. Frontiers, 2021.
[Published Version] View | Files available | DOI | WoS
 
[17]
2019 | Published | Journal Article | IST-REx-ID: 8263 | OA
P. V. Shelyakin, O. Bochkareva, A. A. Karan, and M. S. Gelfand, “Micro-evolution of three Streptococcus species: Selection, antigenic variation, and horizontal gene inflow,” BMC Evolutionary Biology, vol. 19. Springer Nature, 2019.
[Published Version] View | DOI | Download Published Version (ext.)
 
[16]
2019 | Published | Journal Article | IST-REx-ID: 6898 | OA
O. M. Sigalova et al., “Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction,” BMC Genomics, vol. 20, no. 1. BioMed Central, 2019.
[Published Version] View | Files available | DOI | WoS
 
[15]
2019 | Research Data Reference | IST-REx-ID: 9731 | OA
O. Sigalova et al., “Additional file 11 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[14]
2019 | Research Data Reference | IST-REx-ID: 9783 | OA
O. M. Sigalova et al., “Additional file 10 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[13]
2019 | Research Data Reference | IST-REx-ID: 9890 | OA
O. M. Sigalova et al., “Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[12]
2019 | Research Data Reference | IST-REx-ID: 9892 | OA
O. M. Sigalova et al., “Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[11]
2019 | Research Data Reference | IST-REx-ID: 9893 | OA
O. M. Sigalova et al., “Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[10]
2019 | Research Data Reference | IST-REx-ID: 9894 | OA
O. M. Sigalova et al., “Additional file 18 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[9]
2019 | Research Data Reference | IST-REx-ID: 9895 | OA
O. M. Sigalova et al., “Additional file 19 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[8]
2019 | Research Data Reference | IST-REx-ID: 9896 | OA
O. M. Sigalova et al., “Additional file 1 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[7]
2019 | Research Data Reference | IST-REx-ID: 9897 | OA
O. M. Sigalova et al., “Additional file 20 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[6]
2019 | Research Data Reference | IST-REx-ID: 9898 | OA
O. M. Sigalova et al., “Additional file 21 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[5]
2019 | Research Data Reference | IST-REx-ID: 9899 | OA
O. M. Sigalova et al., “Additional file 2 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[4]
2019 | Research Data Reference | IST-REx-ID: 9900 | OA
O. M. Sigalova et al., “Additional file 5 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[3]
2019 | Research Data Reference | IST-REx-ID: 9901 | OA
O. M. Sigalova et al., “Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[2]
2018 | Published | Journal Article | IST-REx-ID: 8262 | OA
O. Bochkareva, E. V. Moroz, I. I. Davydov, and M. S. Gelfand, “Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp.,” BMC Genomics, vol. 19. Springer Nature, 2018.
[Published Version] View | DOI | Download Published Version (ext.)
 
[1]
2018 | Published | Journal Article | IST-REx-ID: 8265 | OA
O. Bochkareva et al., “Genome rearrangements and phylogeny reconstruction in Yersinia pestis,” PeerJ, vol. 6. PeerJ, 2018.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
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21 Publications

Mark all

[21]
2023 | Published | Journal Article | IST-REx-ID: 14716 | OA
A. Yurtseven, S. Buyanova, A. A. A. Agrawal, O. Bochkareva, and O. V. V. Kalinina, “Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis,” BMC Microbiology, vol. 23, no. 1. Springer Nature, 2023.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[20]
2022 | Published | Journal Article | IST-REx-ID: 11344 | OA
N. Dranenko, M. Tutukina, M. Gelfand, F. Kondrashov, and O. Bochkareva, “Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia,” Scientific Reports, vol. 12. Springer Nature, 2022.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2022 | Published | Journal Article | IST-REx-ID: 10927 | OA
A. Zabelkin, Y. Yakovleva, O. Bochkareva, and N. Alexeev, “PaReBrick: PArallel REarrangements and BReaks identification toolkit,” Bioinformatics, vol. 38, no. 2. Oxford Academic, pp. 357–363, 2022.
[Published Version] View | Files available | DOI | WoS
 
[18]
2021 | Published | Journal Article | IST-REx-ID: 9380 | OA
Z. Seferbekova et al., “High rates of genome rearrangements and pathogenicity of Shigella spp,” Frontiers in Microbiology, vol. 12. Frontiers, 2021.
[Published Version] View | Files available | DOI | WoS
 
[17]
2019 | Published | Journal Article | IST-REx-ID: 8263 | OA
P. V. Shelyakin, O. Bochkareva, A. A. Karan, and M. S. Gelfand, “Micro-evolution of three Streptococcus species: Selection, antigenic variation, and horizontal gene inflow,” BMC Evolutionary Biology, vol. 19. Springer Nature, 2019.
[Published Version] View | DOI | Download Published Version (ext.)
 
[16]
2019 | Published | Journal Article | IST-REx-ID: 6898 | OA
O. M. Sigalova et al., “Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction,” BMC Genomics, vol. 20, no. 1. BioMed Central, 2019.
[Published Version] View | Files available | DOI | WoS
 
[15]
2019 | Research Data Reference | IST-REx-ID: 9731 | OA
O. Sigalova et al., “Additional file 11 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[14]
2019 | Research Data Reference | IST-REx-ID: 9783 | OA
O. M. Sigalova et al., “Additional file 10 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[13]
2019 | Research Data Reference | IST-REx-ID: 9890 | OA
O. M. Sigalova et al., “Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[12]
2019 | Research Data Reference | IST-REx-ID: 9892 | OA
O. M. Sigalova et al., “Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[11]
2019 | Research Data Reference | IST-REx-ID: 9893 | OA
O. M. Sigalova et al., “Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[10]
2019 | Research Data Reference | IST-REx-ID: 9894 | OA
O. M. Sigalova et al., “Additional file 18 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[9]
2019 | Research Data Reference | IST-REx-ID: 9895 | OA
O. M. Sigalova et al., “Additional file 19 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[8]
2019 | Research Data Reference | IST-REx-ID: 9896 | OA
O. M. Sigalova et al., “Additional file 1 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[7]
2019 | Research Data Reference | IST-REx-ID: 9897 | OA
O. M. Sigalova et al., “Additional file 20 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[6]
2019 | Research Data Reference | IST-REx-ID: 9898 | OA
O. M. Sigalova et al., “Additional file 21 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[5]
2019 | Research Data Reference | IST-REx-ID: 9899 | OA
O. M. Sigalova et al., “Additional file 2 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[4]
2019 | Research Data Reference | IST-REx-ID: 9900 | OA
O. M. Sigalova et al., “Additional file 5 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[3]
2019 | Research Data Reference | IST-REx-ID: 9901 | OA
O. M. Sigalova et al., “Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[2]
2018 | Published | Journal Article | IST-REx-ID: 8262 | OA
O. Bochkareva, E. V. Moroz, I. I. Davydov, and M. S. Gelfand, “Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp.,” BMC Genomics, vol. 19. Springer Nature, 2018.
[Published Version] View | DOI | Download Published Version (ext.)
 
[1]
2018 | Published | Journal Article | IST-REx-ID: 8265 | OA
O. Bochkareva et al., “Genome rearrangements and phylogeny reconstruction in Yersinia pestis,” PeerJ, vol. 6. PeerJ, 2018.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
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Citation Style: IEEE

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