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Céline Camila Coraly Bräutigam

Bahti Zakirov

Anuj Patel

Gasper Tkacik

Ekaterina Maksimova

Krishnan Iyer

Athina Diakogianni

Reka Borbely

Julian Renaud

Puzhen Xia

Gábor Lengyel

Alexis Benichou

Simon Rella

Natalia Ruzickova

Sofia Backlund

Tetiana Rabiichuk

David Brückner

Cristina Savin

Georg Martius

Moritz Lang

Anna Andersson

Daniele De Martino

Sreyam Sengupta

Katarina Bodova

Matthew Chalk

Heloisa Chiossi

Remy Chait

Georg Rieckh

Bor Kavcic

Anna Levina (Martius)

Gabriel Mitchell

Tamar Friedlander

Sarah Cepeda Humerez

Thomas Sokolowski

Roshan Prizak

Jan Humplik

Michal Hledik

Vicent Botella Soler

Aditya Gilra

Mantas Gabrielaitis

Rok Grah

Jakob Ruess

Fabrizio Lombardi



182 Publications

2015 | Published | Journal Article | IST-REx-ID: 1697 | OA
Marre, Olivier, Vicente Botella Soler, Kristina Simmons, Thierry Mora, Gašper Tkačik, and Michael Berry. “High Accuracy Decoding of Dynamical Motion from a Large Retinal Population.” PLoS Computational Biology. Public Library of Science, 2015. https://doi.org/10.1371/journal.pcbi.1004304.
[Published Version] View | Files available | DOI
 
2015 | Published | Journal Article | IST-REx-ID: 1701 | OA
Tkačik, Gašper, Thierry Mora, Olivier Marre, Dario Amodei, Stephanie Palmer, Michael Berry Ii, and William Bialek. “Thermodynamics and Signatures of Criticality in a Network of Neurons.” PNAS. National Academy of Sciences, 2015. https://doi.org/10.1073/pnas.1514188112.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2015 | Published | Journal Article | IST-REx-ID: 1827 | OA
Friedlander, Tamar, Avraham Mayo, Tsvi Tlusty, and Uri Alon. “Evolution of Bow-Tie Architectures in Biology.” PLoS Computational Biology. Public Library of Science, 2015. https://doi.org/10.1371/journal.pcbi.1004055.
[Published Version] View | Files available | DOI
 
2015 | Published | Journal Article | IST-REx-ID: 1861
Ruess, Jakob, and John Lygeros. “Moment-Based Methods for Parameter Inference and Experiment Design for Stochastic Biochemical Reaction Networks.” ACM Transactions on Modeling and Computer Simulation. ACM, 2015. https://doi.org/10.1145/2688906.
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2015 | Published | Journal Article | IST-REx-ID: 1885 | OA
Tkačik, Gašper, Julien Dubuis, Mariela Petkova, and Thomas Gregor. “Positional Information, Positional Error, and Readout Precision in Morphogenesis: A Mathematical Framework.” Genetics. Genetics Society of America, 2015. https://doi.org/10.1534/genetics.114.171850.
[Preprint] View | DOI | Download Preprint (ext.)
 
2015 | Published | Journal Article | IST-REx-ID: 1940 | OA
Sokolowski, Thomas R, and Gašper Tkačik. “Optimizing Information Flow in Small Genetic Networks. IV. Spatial Coupling.” Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics, 2015. https://doi.org/10.1103/PhysRevE.91.062710.
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2015 | Published | Journal Article | IST-REx-ID: 1538 | OA
Ruess, Jakob, Francesca Parise, Andreas Milias Argeitis, Mustafa Khammash, and John Lygeros. “Iterative Experiment Design Guides the Characterization of a Light-Inducible Gene Expression Circuit.” PNAS. National Academy of Sciences, 2015. https://doi.org/10.1073/pnas.1423947112.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2015 | Published | Journal Article | IST-REx-ID: 1539 | OA
Ruess, Jakob. “Minimal Moment Equations for Stochastic Models of Biochemical Reaction Networks with Partially Finite State Space.” Journal of Chemical Physics. American Institute of Physics, 2015. https://doi.org/10.1063/1.4937937.
[Published Version] View | Files available | DOI
 
2015 | Published | Journal Article | IST-REx-ID: 1564 | OA
Gilson, Matthieu, Cristina Savin, and Friedemann Zenke. “Editorial: Emergent Neural Computation from the Interaction of Different Forms of Plasticity.” Frontiers in Computational Neuroscience. Frontiers Research Foundation, 2015. https://doi.org/10.3389/fncom.2015.00145.
[Published Version] View | Files available | DOI
 
2015 | Published | Journal Article | IST-REx-ID: 1570 | OA
Der, Ralf, and Georg S Martius. “Novel Plasticity Rule Can Explain the Development of Sensorimotor Intelligence.” PNAS. National Academy of Sciences, 2015. https://doi.org/10.1073/pnas.1508400112.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2015 | Published | Journal Article | IST-REx-ID: 1576 | OA
Cepeda Humerez, Sarah A, Georg Rieckh, and Gašper Tkačik. “Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation.” Physical Review Letters. American Physical Society, 2015. https://doi.org/10.1103/PhysRevLett.115.248101.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
2015 | Research Data Reference | IST-REx-ID: 9712
Tugrul, Murat, Tiago Paixao, Nicholas H Barton, and Gašper Tkačik. “Other Fitness Models for Comparison & for Interacting TFBSs.” Public Library of Science, 2015. https://doi.org/10.1371/journal.pgen.1005639.s001.
[Published Version] View | Files available | DOI
 
2015 | Research Data Reference | IST-REx-ID: 9718
Friedlander, Tamar, Avraham E. Mayo, Tsvi Tlusty, and Uri Alon. “Supporting Information Text.” Public Library of Science, 2015. https://doi.org/10.1371/journal.pcbi.1004055.s001.
[Published Version] View | Files available | DOI
 
2015 | Research Data Reference | IST-REx-ID: 9773
Friedlander, Tamar, Avraham E. Mayo, Tsvi Tlusty, and Uri Alon. “Evolutionary Simulation Code.” Public Library of Science, 2015. https://doi.org/10.1371/journal.pcbi.1004055.s002.
[Published Version] View | Files available | DOI
 
2014 | Published | Journal Article | IST-REx-ID: 3263 | OA
Tkačik, Gašper, Anandamohan Ghosh, Elad Schneidman, and Ronen Segev. “Adaptation to Changes in Higher-Order Stimulus Statistics in the Salamander Retina.” PLoS One. Public Library of Science, 2014. https://doi.org/10.1371/journal.pone.0085841.
[Published Version] View | Files available | DOI
 
2014 | Published | Conference Paper | IST-REx-ID: 1708
Savin, Cristina, and Sophie Denève. “Spatio-Temporal Representations of Uncertainty in Spiking Neural Networks,” 3:2024–32. Neural Information Processing Systems, 2014.
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2014 | Published | Journal Article | IST-REx-ID: 1886 | OA
Hermundstad, Ann, John Briguglio, Mary Conte, Jonathan Victor, Vijay Balasubramanian, and Gašper Tkačik. “Variance Predicts Salience in Central Sensory Processing.” ELife. eLife Sciences Publications, 2014. https://doi.org/10.7554/eLife.03722.
[Published Version] View | Files available | DOI
 
2014 | Published | Journal Article | IST-REx-ID: 1896 | OA
Kollár, Richard, Katarina Bodova, Jozef Nosek, and Ľubomír Tomáška. “Mathematical Model of Alternative Mechanism of Telomere Length Maintenance.” Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics, 2014. https://doi.org/10.1103/PhysRevE.89.032701.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
2014 | Published | Journal Article | IST-REx-ID: 1909 | OA
Ezard, Thomas, Roshan Prizak, and Rebecca Hoyle. “The Fitness Costs of Adaptation via Phenotypic Plasticity and Maternal Effects.” Functional Ecology. Wiley-Blackwell, 2014. https://doi.org/10.1111/1365-2435.12207.
[Published Version] View | Files available | DOI
 
2014 | Published | Journal Article | IST-REx-ID: 1928
Humplik, Jan, Alison Hill, and Martin Nowak. “Evolutionary Dynamics of Infectious Diseases in Finite Populations.” Journal of Theoretical Biology. Elsevier, 2014. https://doi.org/10.1016/j.jtbi.2014.06.039.
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