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Céline Camila Coraly Bräutigam

Bahti Zakirov

Anuj Patel

Gasper Tkacik

Ekaterina Maksimova

Krishnan Iyer

Athina Diakogianni

Reka Borbely

Julian Renaud

Puzhen Xia

Gábor Lengyel

Alexis Benichou

Simon Rella

Natalia Ruzickova

Sofia Backlund

Tetiana Rabiichuk

David Brückner

Moritz Lang

Anna Andersson

Cristina Savin

Georg Martius

Daniele De Martino

Sreyam Sengupta

Remy Chait

Georg Rieckh

Bor Kavcic

Anna Levina (Martius)

Katarina Bodova

Matthew Chalk

Heloisa Chiossi

Gabriel Mitchell

Tamar Friedlander

Sarah Cepeda Humerez

Thomas Sokolowski

Roshan Prizak

Jan Humplik

Aditya Gilra

Mantas Gabrielaitis

Michal Hledik

Vicent Botella Soler

Rok Grah

Jakob Ruess

Fabrizio Lombardi



182 Publications

2015 | Published | Journal Article | IST-REx-ID: 1576 | OA
Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation
S.A. Cepeda Humerez, G. Rieckh, G. Tkačik, Physical Review Letters 115 (2015).
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
2015 | Published | Journal Article | IST-REx-ID: 1655 | OA
Quantifying emergent behavior of autonomous robots
G.S. Martius, E. Olbrich, Entropy 17 (2015) 7266–7297.
[Published Version] View | Files available | DOI
 
2015 | Published | Conference Paper | IST-REx-ID: 1658
Adaptive moment closure for parameter inference of biochemical reaction networks
S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, C. Schilling, 9308 (2015) 77–89.
View | Files available | DOI
 
2015 | Published | Journal Article | IST-REx-ID: 1666 | OA
Dynamics of transcription factor binding site evolution
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, PLoS Genetics 11 (2015).
[Published Version] View | Files available | DOI
 
2015 | Published | Journal Article | IST-REx-ID: 1697 | OA
High accuracy decoding of dynamical motion from a large retinal population
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, M. Berry, PLoS Computational Biology 11 (2015).
[Published Version] View | Files available | DOI
 
2015 | Published | Journal Article | IST-REx-ID: 1701 | OA
Thermodynamics and signatures of criticality in a network of neurons
G. Tkačik, T. Mora, O. Marre, D. Amodei, S. Palmer, M. Berry Ii, W. Bialek, PNAS 112 (2015) 11508–11513.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2015 | Published | Journal Article | IST-REx-ID: 1827 | OA
Evolution of bow-tie architectures in biology
T. Friedlander, A. Mayo, T. Tlusty, U. Alon, PLoS Computational Biology 11 (2015).
[Published Version] View | Files available | DOI
 
2015 | Published | Journal Article | IST-REx-ID: 1861
Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks
J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation 25 (2015).
View | DOI
 
2015 | Published | Journal Article | IST-REx-ID: 1885 | OA
Positional information, positional error, and readout precision in morphogenesis: A mathematical framework
G. Tkačik, J. Dubuis, M. Petkova, T. Gregor, Genetics 199 (2015) 39–59.
[Preprint] View | DOI | Download Preprint (ext.)
 
2015 | Published | Journal Article | IST-REx-ID: 1940 | OA
Optimizing information flow in small genetic networks. IV. Spatial coupling
T.R. Sokolowski, G. Tkačik, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).
[Preprint] View | DOI | Download Preprint (ext.)
 
2015 | Research Data Reference | IST-REx-ID: 9712
Other fitness models for comparison & for interacting TFBSs
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, (2015).
[Published Version] View | Files available | DOI
 
2015 | Research Data Reference | IST-REx-ID: 9718
Supporting information text
T. Friedlander, A.E. Mayo, T. Tlusty, U. Alon, (2015).
[Published Version] View | Files available | DOI
 
2015 | Research Data Reference | IST-REx-ID: 9773
Evolutionary simulation code
T. Friedlander, A.E. Mayo, T. Tlusty, U. Alon, (2015).
[Published Version] View | Files available | DOI
 
2015 | Published | Journal Article | IST-REx-ID: 10794 | OA
Bayesian inference for stochastic individual-based models of ecological systems: a pest control simulation study
F. Parise, J. Lygeros, J. Ruess, Frontiers in Environmental Science 3 (2015).
[Published Version] View | Files available | DOI
 
2014 | Published | Journal Article | IST-REx-ID: 3263 | OA
Adaptation to changes in higher-order stimulus statistics in the salamander retina
G. Tkačik, A. Ghosh, E. Schneidman, R. Segev, PLoS One 9 (2014).
[Published Version] View | Files available | DOI
 
2014 | Published | Journal Article | IST-REx-ID: 537 | OA
Fitness consequences of maternal and grandmaternal effects
R. Prizak, T. Ezard, R. Hoyle, Ecology and Evolution 4 (2014) 3139–3145.
[Published Version] View | Files available | DOI
 
2014 | Published | Conference Paper | IST-REx-ID: 1708
Spatio-temporal representations of uncertainty in spiking neural networks
C. Savin, S. Denève, in:, Neural Information Processing Systems, 2014, pp. 2024–2032.
View | Download None (ext.)
 
2014 | Published | Journal Article | IST-REx-ID: 1886 | OA
Variance predicts salience in central sensory processing
A. Hermundstad, J. Briguglio, M. Conte, J. Victor, V. Balasubramanian, G. Tkačik, ELife (2014).
[Published Version] View | Files available | DOI
 
2014 | Published | Journal Article | IST-REx-ID: 1896 | OA
Mathematical model of alternative mechanism of telomere length maintenance
R. Kollár, K. Bodova, J. Nosek, Ľ. Tomáška, Physical Review E Statistical Nonlinear and Soft Matter Physics 89 (2014).
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
2014 | Published | Journal Article | IST-REx-ID: 1909 | OA
The fitness costs of adaptation via phenotypic plasticity and maternal effects
T. Ezard, R. Prizak, R. Hoyle, Functional Ecology 28 (2014) 693–701.
[Published Version] View | Files available | DOI
 

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