Caroline Uhler

Uhler Group

25 Publications

Mark all

[25]
2018 | Published | Journal Article | IST-REx-ID: 2015 | OA
Raskutti G, Uhler C. Learning directed acyclic graphs based on sparsest permutations. STAT. 2018;7(1). doi:10.1002/sta4.183
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[24]
2018 | Published | Journal Article | IST-REx-ID: 1092 | OA
Mohammadi F, Uhler C, Wang C, Yu J. Generalized permutohedra from probabilistic graphical models. SIAM Journal on Discrete Mathematics. 2018;32(1):64-93. doi:10.1137/16M107894X
[Preprint] View | DOI | Download Preprint (ext.)
 
[23]
2017 | Published | Journal Article | IST-REx-ID: 1208 | OA
Zwiernik P, Uhler C, Richards D. Maximum likelihood estimation for linear Gaussian covariance models. Journal of the Royal Statistical Society Series B: Statistical Methodology. 2017;79(4):1269-1292. doi:10.1111/rssb.12217
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
[22]
2017 | Published | Journal Article | IST-REx-ID: 698 | OA
Wang Y, Nagarajan M, Uhler C, Shivashankar G. Orientation and repositioning of chromosomes correlate with cell geometry dependent gene expression. Molecular Biology of the Cell. 2017;28(14):1997-2009. doi:10.1091/mbc.E16-12-0825
[Published Version] View | Files available | DOI
 
[21]
2017 | Published | Journal Article | IST-REx-ID: 2016 | OA
Martin Del Campo Sanchez A, Cepeda Humerez SA, Uhler C. Exact goodness-of-fit testing for the Ising model. Scandinavian Journal of Statistics. 2017;44(2):285-306. doi:10.1111/sjos.12251
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
[20]
2017 | Published | Journal Article | IST-REx-ID: 1089 | OA
Fallat S, Lauritzen S, Sadeghi K, Uhler C, Wermuth N, Zwiernik P. Total positivity in Markov structures. Annals of Statistics. 2017;45(3):1152-1184. doi:10.1214/16-AOS1478
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
[19]
2016 | Published | Journal Article | IST-REx-ID: 1293 | OA
Solus LT, Uhler C, Yoshida R. Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors. Linear Algebra and Its Applications. 2016;509:247-275. doi:10.1016/j.laa.2016.07.026
[Preprint] View | DOI | Download Preprint (ext.)
 
[18]
2016 | Published | Journal Article | IST-REx-ID: 1480 | OA
Michałek M, Sturmfels B, Uhler C, Zwiernik P. Exponential varieties. Proceedings of the London Mathematical Society. 2016;112(1):27-56. doi:10.1112/plms/pdv066
[Preprint] View | DOI | Download Preprint (ext.)
 
[17]
2016 | Published | Journal Article | IST-REx-ID: 1088
Uhler C, Shivashankar GV. Geometric control and modeling of genome reprogramming. BioArchitecture. 2016;6(4):76-84. doi:10.1080/19490992.2016.1201620
View | DOI
 
[16]
2015 | Published | Journal Article | IST-REx-ID: 2014 | OA
Klimova A, Uhler C, Rudas T. Faithfulness and learning hypergraphs from discrete distributions. Computational Statistics & Data Analysis. 2015;87(7):57-72. doi:10.1016/j.csda.2015.01.017
[Preprint] View | DOI | Download Preprint (ext.)
 
[15]
2014 | Published | Journal Article | IST-REx-ID: 2011 | OA
Yu F, Fienberg S, Slaković A, Uhler C. Scalable privacy-preserving data sharing methodology for genome-wide association studies. Journal of Biomedical Informatics. 2014;50:133-141. doi:10.1016/j.jbi.2014.01.008
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[14]
2014 | Submitted | Preprint | IST-REx-ID: 2012 | OA
Iglesias Ham M, Kerber M, Uhler C. Sphere packing with limited overlap. arXiv. doi:10.48550/arXiv.1401.0468
[Submitted Version] View | DOI | Download Submitted Version (ext.) | arXiv
 
[13]
2014 | Published | Journal Article | IST-REx-ID: 2013 | OA
Lin S, Uhler C, Sturmfels B, Bühlmann P. Hypersurfaces and their singularities in partial correlation testing. Foundations of Computational Mathematics. 2014;14(5):1079-1116. doi:10.1007/s10208-014-9205-0
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[12]
2014 | Published | Preprint | IST-REx-ID: 2017 | OA
Uhler C, Lenkoski A, Richards D. Exact formulas for the normalizing constants of Wishart distributions for graphical models. ArXiv. 2014.
View | Download (ext.)
 
[11]
2014 | Published | Conference Paper | IST-REx-ID: 2047 | OA
Yu F, Rybar M, Uhler C, Fienberg S. Differentially-private logistic regression for detecting multiple-SNP association in GWAS databases. In: Domingo Ferrer J, ed. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol 8744. Springer; 2014:170-184. doi:10.1007/978-3-319-11257-2_14
[Submitted Version] View | DOI | Download Submitted Version (ext.) | arXiv
 
[10]
2013 | Published | Journal Article | IST-REx-ID: 2009 | OA
Uhler C, Slavkovic A, Fienberg S. Privacy-preserving data sharing for genome-wide association studies. Journal of Privacy and Confidentiality . 2013;5(1):137-166. doi:10.29012/jpc.v5i1.629
[Published Version] View | DOI | Download Published Version (ext.)
 
[9]
2013 | Published | Journal Article | IST-REx-ID: 2010 | OA
Uhler C, Raskutti G, Bühlmann P, Yu B. Geometry of the faithfulness assumption in causal inference. The Annals of Statistics. 2013;41(2):436-463. doi:10.1214/12-AOS1080
[Published Version] View | DOI | Download Published Version (ext.) | arXiv
 
[8]
2013 | Published | Journal Article | IST-REx-ID: 2280 | OA
Uhler C, Wright S. Packing ellipsoids with overlap. SIAM Review. 2013;55(4):671-706. doi:10.1137/120872309
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[7]
2012 | Published | Journal Article | IST-REx-ID: 2959 | OA
Uhler C. Geometry of maximum likelihood estimation in Gaussian graphical models. Annals of Statistics. 2012;40(1):238-261. doi:10.1214/11-AOS957
[Preprint] View | DOI | Download Preprint (ext.)
 
[6]
2011 | Published | Conference Paper | IST-REx-ID: 2960
Fienberg S, Slavkovic A, Uhler C. Privacy Preserving GWAS Data Sharing. In: IEEE; 2011. doi:10.1109/ICDMW.2011.140
View | DOI
 
[5]
2011 | Published | Journal Article | IST-REx-ID: 2961 | OA
Malaspinas A, Uhler C. Detecting epistasis via Markov bases. Journal of Algebraic Statistics. 2011;2(1):36-53. doi:http://dx.doi.org/10.18409/jas.v2i1.27
View | DOI | Download (ext.)
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 3306 | OA
Evans S, Sturmfels B, Uhler C. Commuting birth and death processes. The Annals of Applied Probability. 2010;20:238-266. doi:10.1214/09-AAP615
View | DOI | Download (ext.)
 
[3]
2010 | Published | Journal Article | IST-REx-ID: 3308 | OA
Sturmfels B, Uhler C. Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry. Annals of the Institute of Statistical Mathematics. 2010;62(4):603-638. doi:10.1007/s10463-010-0295-4
View | DOI | Download (ext.)
 
[2]
2009 | Published | Journal Article | IST-REx-ID: 3309
Uhler C. Mastitis in dairy production: Estimation of sensitivity, specificity and disease prevalence in the absence of a gold standard. Journal of Agricultural Biological and Environmental Statistics. 2009;14(1):79-98. doi:10.1198/jabes.2009.0005
View | DOI
 
[1]
2008 | Published | Journal Article | IST-REx-ID: 3307 | OA
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.
View | DOI | Download (ext.)
 
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25 Publications

Mark all

[25]
2018 | Published | Journal Article | IST-REx-ID: 2015 | OA
Raskutti G, Uhler C. Learning directed acyclic graphs based on sparsest permutations. STAT. 2018;7(1). doi:10.1002/sta4.183
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[24]
2018 | Published | Journal Article | IST-REx-ID: 1092 | OA
Mohammadi F, Uhler C, Wang C, Yu J. Generalized permutohedra from probabilistic graphical models. SIAM Journal on Discrete Mathematics. 2018;32(1):64-93. doi:10.1137/16M107894X
[Preprint] View | DOI | Download Preprint (ext.)
 
[23]
2017 | Published | Journal Article | IST-REx-ID: 1208 | OA
Zwiernik P, Uhler C, Richards D. Maximum likelihood estimation for linear Gaussian covariance models. Journal of the Royal Statistical Society Series B: Statistical Methodology. 2017;79(4):1269-1292. doi:10.1111/rssb.12217
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
[22]
2017 | Published | Journal Article | IST-REx-ID: 698 | OA
Wang Y, Nagarajan M, Uhler C, Shivashankar G. Orientation and repositioning of chromosomes correlate with cell geometry dependent gene expression. Molecular Biology of the Cell. 2017;28(14):1997-2009. doi:10.1091/mbc.E16-12-0825
[Published Version] View | Files available | DOI
 
[21]
2017 | Published | Journal Article | IST-REx-ID: 2016 | OA
Martin Del Campo Sanchez A, Cepeda Humerez SA, Uhler C. Exact goodness-of-fit testing for the Ising model. Scandinavian Journal of Statistics. 2017;44(2):285-306. doi:10.1111/sjos.12251
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
[20]
2017 | Published | Journal Article | IST-REx-ID: 1089 | OA
Fallat S, Lauritzen S, Sadeghi K, Uhler C, Wermuth N, Zwiernik P. Total positivity in Markov structures. Annals of Statistics. 2017;45(3):1152-1184. doi:10.1214/16-AOS1478
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
[19]
2016 | Published | Journal Article | IST-REx-ID: 1293 | OA
Solus LT, Uhler C, Yoshida R. Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors. Linear Algebra and Its Applications. 2016;509:247-275. doi:10.1016/j.laa.2016.07.026
[Preprint] View | DOI | Download Preprint (ext.)
 
[18]
2016 | Published | Journal Article | IST-REx-ID: 1480 | OA
Michałek M, Sturmfels B, Uhler C, Zwiernik P. Exponential varieties. Proceedings of the London Mathematical Society. 2016;112(1):27-56. doi:10.1112/plms/pdv066
[Preprint] View | DOI | Download Preprint (ext.)
 
[17]
2016 | Published | Journal Article | IST-REx-ID: 1088
Uhler C, Shivashankar GV. Geometric control and modeling of genome reprogramming. BioArchitecture. 2016;6(4):76-84. doi:10.1080/19490992.2016.1201620
View | DOI
 
[16]
2015 | Published | Journal Article | IST-REx-ID: 2014 | OA
Klimova A, Uhler C, Rudas T. Faithfulness and learning hypergraphs from discrete distributions. Computational Statistics & Data Analysis. 2015;87(7):57-72. doi:10.1016/j.csda.2015.01.017
[Preprint] View | DOI | Download Preprint (ext.)
 
[15]
2014 | Published | Journal Article | IST-REx-ID: 2011 | OA
Yu F, Fienberg S, Slaković A, Uhler C. Scalable privacy-preserving data sharing methodology for genome-wide association studies. Journal of Biomedical Informatics. 2014;50:133-141. doi:10.1016/j.jbi.2014.01.008
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[14]
2014 | Submitted | Preprint | IST-REx-ID: 2012 | OA
Iglesias Ham M, Kerber M, Uhler C. Sphere packing with limited overlap. arXiv. doi:10.48550/arXiv.1401.0468
[Submitted Version] View | DOI | Download Submitted Version (ext.) | arXiv
 
[13]
2014 | Published | Journal Article | IST-REx-ID: 2013 | OA
Lin S, Uhler C, Sturmfels B, Bühlmann P. Hypersurfaces and their singularities in partial correlation testing. Foundations of Computational Mathematics. 2014;14(5):1079-1116. doi:10.1007/s10208-014-9205-0
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[12]
2014 | Published | Preprint | IST-REx-ID: 2017 | OA
Uhler C, Lenkoski A, Richards D. Exact formulas for the normalizing constants of Wishart distributions for graphical models. ArXiv. 2014.
View | Download (ext.)
 
[11]
2014 | Published | Conference Paper | IST-REx-ID: 2047 | OA
Yu F, Rybar M, Uhler C, Fienberg S. Differentially-private logistic regression for detecting multiple-SNP association in GWAS databases. In: Domingo Ferrer J, ed. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol 8744. Springer; 2014:170-184. doi:10.1007/978-3-319-11257-2_14
[Submitted Version] View | DOI | Download Submitted Version (ext.) | arXiv
 
[10]
2013 | Published | Journal Article | IST-REx-ID: 2009 | OA
Uhler C, Slavkovic A, Fienberg S. Privacy-preserving data sharing for genome-wide association studies. Journal of Privacy and Confidentiality . 2013;5(1):137-166. doi:10.29012/jpc.v5i1.629
[Published Version] View | DOI | Download Published Version (ext.)
 
[9]
2013 | Published | Journal Article | IST-REx-ID: 2010 | OA
Uhler C, Raskutti G, Bühlmann P, Yu B. Geometry of the faithfulness assumption in causal inference. The Annals of Statistics. 2013;41(2):436-463. doi:10.1214/12-AOS1080
[Published Version] View | DOI | Download Published Version (ext.) | arXiv
 
[8]
2013 | Published | Journal Article | IST-REx-ID: 2280 | OA
Uhler C, Wright S. Packing ellipsoids with overlap. SIAM Review. 2013;55(4):671-706. doi:10.1137/120872309
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[7]
2012 | Published | Journal Article | IST-REx-ID: 2959 | OA
Uhler C. Geometry of maximum likelihood estimation in Gaussian graphical models. Annals of Statistics. 2012;40(1):238-261. doi:10.1214/11-AOS957
[Preprint] View | DOI | Download Preprint (ext.)
 
[6]
2011 | Published | Conference Paper | IST-REx-ID: 2960
Fienberg S, Slavkovic A, Uhler C. Privacy Preserving GWAS Data Sharing. In: IEEE; 2011. doi:10.1109/ICDMW.2011.140
View | DOI
 
[5]
2011 | Published | Journal Article | IST-REx-ID: 2961 | OA
Malaspinas A, Uhler C. Detecting epistasis via Markov bases. Journal of Algebraic Statistics. 2011;2(1):36-53. doi:http://dx.doi.org/10.18409/jas.v2i1.27
View | DOI | Download (ext.)
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 3306 | OA
Evans S, Sturmfels B, Uhler C. Commuting birth and death processes. The Annals of Applied Probability. 2010;20:238-266. doi:10.1214/09-AAP615
View | DOI | Download (ext.)
 
[3]
2010 | Published | Journal Article | IST-REx-ID: 3308 | OA
Sturmfels B, Uhler C. Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry. Annals of the Institute of Statistical Mathematics. 2010;62(4):603-638. doi:10.1007/s10463-010-0295-4
View | DOI | Download (ext.)
 
[2]
2009 | Published | Journal Article | IST-REx-ID: 3309
Uhler C. Mastitis in dairy production: Estimation of sensitivity, specificity and disease prevalence in the absence of a gold standard. Journal of Agricultural Biological and Environmental Statistics. 2009;14(1):79-98. doi:10.1198/jabes.2009.0005
View | DOI
 
[1]
2008 | Published | Journal Article | IST-REx-ID: 3307 | OA
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.
View | DOI | Download (ext.)
 
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