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182 Publications


2021 | Published | Journal Article | IST-REx-ID: 9226 | OA
The many bits of positional information
G. Tkačik, T. Gregor, Development 148 (2021).
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 

2021 | Published | Journal Article | IST-REx-ID: 9283 | OA
Local genetic context shapes the function of a gene regulatory network
A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).
[Published Version] View | Files available | DOI | WoS
 

2021 | Published | Journal Article | IST-REx-ID: 9362 | OA
Inferring the function performed by a recurrent neural network
M.J. Chalk, G. Tkačik, O. Marre, PLoS ONE 16 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2021 | Published | Journal Article | IST-REx-ID: 9439 | OA
Efficient and adaptive sensory codes
W.F. Mlynarski, A.M. Hermundstad, Nature Neuroscience 24 (2021) 998–1009.
[Preprint] View | DOI | Download Preprint (ext.) | WoS
 

2021 | Submitted | Preprint | IST-REx-ID: 10077 | OA
The structure of hippocampal CA1 interactions optimizes spatial coding across experience
M. Nardin, J.L. Csicsvari, G. Tkačik, C. Savin, BioRxiv (n.d.).
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 

2021 | Published | Journal Article | IST-REx-ID: 10535 | OA
Dynamic maximum entropy provides accurate approximation of structured population dynamics
K. Bodova, E. Szep, N.H. Barton, PLoS Computational Biology 17 (2021).
[Published Version] View | Files available | DOI | PubMed | Europe PMC | arXiv
 

2021 | Submitted | Preprint | IST-REx-ID: 10579 | OA
Token-driven totally asymmetric simple exclusion process
B. Kavcic, G. Tkačik, ArXiv (n.d.).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2021 | Published | Journal Article | IST-REx-ID: 9822 | OA
Sequential and switchable patterning for studying cellular processes under spatiotemporal control
T. Zisis, J. Schwarz, M. Balles, M. Kretschmer, M. Nemethova, R.P. Chait, R. Hauschild, J. Lange, C.C. Guet, M.K. Sixt, S. Zahler, ACS Applied Materials and Interfaces 13 (2021) 35545–35560.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2021 | Published | Journal Article | IST-REx-ID: 9828 | OA
Fast and accurate amplitude demodulation of wideband signals
M. Gabrielaitis, IEEE Transactions on Signal Processing 69 (2021) 4039–4054.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 

2020 | Published | Journal Article | IST-REx-ID: 8084 | OA
Critical dynamics and coupling in bursts of cortical rhythms indicate non-homeostatic mechanism for sleep-stage transitions and dual role of VLPO neurons in both sleep and wake
F. Lombardi, M. Gómez-Extremera, P. Bernaola-Galván, R. Vetrivelan, C.B. Saper, T.E. Scammell, P.C. Ivanov, Journal of Neuroscience 40 (2020) 171–190.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2020 | Research Data | IST-REx-ID: 8097 | OA
Analysis scripts and research data for the paper "Mechanisms of drug interactions between translation-inhibiting antibiotics"
B. Kavcic, (2020).
[Published Version] View | Files available | DOI
 

2020 | Published | Journal Article | IST-REx-ID: 8105 | OA
Power-law correlations and coupling of active and quiet states underlie a class of complex systems with self-organization at criticality
F. Lombardi, J.W.J.L. Wang, X. Zhang, P.C. Ivanov, EPJ Web of Conferences 230 (2020).
[Published Version] View | Files available | DOI
 

2020 | Published | Thesis | PhD | IST-REx-ID: 8155 | OA
Gene regulation across scales – how biophysical constraints shape evolution
R. Grah, Gene Regulation across Scales – How Biophysical Constraints Shape Evolution, Institute of Science and Technology Austria, 2020.
[Published Version] View | Files available | DOI
 

2020 | Published | Journal Article | IST-REx-ID: 8250 | OA
Mechanisms of drug interactions between translation-inhibiting antibiotics
B. Kavcic, G. Tkačik, M.T. Bollenbach, Nature Communications 11 (2020).
[Published Version] View | Files available | DOI | WoS
 

2020 | Published | Thesis | PhD | IST-REx-ID: 8657 | OA
Perturbations of protein synthesis: from antibiotics to genetics and physiology
B. Kavcic, Perturbations of Protein Synthesis: From Antibiotics to Genetics and Physiology, Institute of Science and Technology Austria, 2020.
[Published Version] View | Files available | DOI
 

2020 | Published | Journal Article | IST-REx-ID: 8698 | OA
Learning probabilistic neural representations with randomly connected circuits
O. Maoz, G. Tkačik, M.S. Esteki, R. Kiani, E. Schneidman, Proceedings of the National Academy of Sciences of the United States of America 117 (2020) 25066–25073.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2020 | Research Data | IST-REx-ID: 8930 | OA
Analysis scripts and research data for the paper "Minimal biophysical model of combined antibiotic action"
B. Kavcic, (2020).
[Published Version] View | Files available | DOI
 

2020 | Published | Journal Article | IST-REx-ID: 8955 | OA
Network physiology of cortico–muscular interactions
R. Rizzo, X. Zhang, J.W.J.L. Wang, F. Lombardi, P.C. Ivanov, Frontiers in Physiology 11 (2020).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2020 | Published | Journal Article | IST-REx-ID: 9000 | OA
Nonequilibrium models of optimal enhancer function
R. Grah, B. Zoller, G. Tkačik, PNAS 117 (2020) 31614–31622.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2020 | Research Data | IST-REx-ID: 7383 | OA
Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation
R. Grah, (2020).
[Published Version] View | Files available | DOI
 

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