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125 Publications


2023 | Published | Journal Article | IST-REx-ID: 12478 | OA
Monitoring lineages of growing and dividing bacteria reveals an inducible memory of mar operon expression
C.C. Guet, L. Bruneaux, P. Oikonomou, M. Aldana, P. Cluzel, Frontiers in Microbiology 14 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 12333 | OA
Adaptation dynamics between copynumber and point mutations
I. Tomanek, C.C. Guet, ELife 11 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Research Data Reference | IST-REx-ID: 12339 | OA
Flow cytometry YFP and CFP data and deep sequencing data of populations evolving in galactose
I. Tomanek, C.C. Guet, (2022).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 

2022 | Published | Journal Article | IST-REx-ID: 11339 | OA
Nutrient and salt depletion synergistically boosts glucose metabolism in individual Escherichia coli cells
G. Glover, M. Voliotis, U. Łapińska, B.M. Invergo, D. Soanes, P. O’Neill, K. Moore, N. Nikolic, P. Petrov, D.S. Milner, S. Roy, K. Heesom, T.A. Richards, K. Tsaneva-Atanasova, S. Pagliara, Communications Biology 5 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 11713 | OA
Quantifying heterologous gene expression during ectopic MazF production in Escherichia coli
N. Nikolic, M. Sauert, T.G. Albanese, I. Moll, BMC Research Notes 15 (2022).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 11843 | OA
Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14
K. Tomasek, A.F. Leithner, I. Glatzová, M.S. Lukesch, C.C. Guet, M.K. Sixt, ELife 11 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Published | Journal Article | IST-REx-ID: 10736 | OA
Predicting bacterial promoter function and evolution from random sequences
M. Lagator, S. Sarikas, M. Steinrueck, D. Toledo-Aparicio, J.P. Bollback, C.C. Guet, G. Tkačik, ELife 11 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 10812
The physiology and genetics of bacterial responses to antibiotic combinations
R. Römhild, M.T. Bollenbach, D.I. Andersson, Nature Reviews Microbiology 20 (2022) 478–490.
View | DOI | WoS | PubMed | Europe PMC
 

2022 | Published | Journal Article | IST-REx-ID: 10939 | OA
Parameter inference for stochastic biochemical models from perturbation experiments parallelised at the single cell level
A. Davidović, R.P. Chait, G. Batt, J. Ruess, PLoS Computational Biology 18 (2022).
[Published Version] View | Files available | DOI
 

2021 | Published | Journal Article | IST-REx-ID: 9046 | OA
Mechanisms and therapeutic potential of collateral sensitivity to antibiotics
R. Römhild, D.I. Andersson, PLoS Pathogens 17 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2021 | Published | Journal Article | IST-REx-ID: 9283 | OA
Local genetic context shapes the function of a gene regulatory network
A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).
[Published Version] View | Files available | DOI | WoS
 

2021 | Published | Journal Article | IST-REx-ID: 9647 | OA
Long lived transients in gene regulation
T. Petrov, C. Igler, A. Sezgin, T.A. Henzinger, C.C. Guet, Theoretical Computer Science 893 (2021) 1–16.
[Published Version] View | Files available | DOI | WoS
 

2021 | Published | Journal Article | IST-REx-ID: 9746 | OA
High potency of sequential therapy with only beta-lactam antibiotics
A. Batra, R. Römhild, E. Rousseau, S. Franzenburg, S. Niemann, H. Schulenburg, ELife 10 (2021).
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 

2021 | Published | Journal Article | IST-REx-ID: 9822 | OA
Sequential and switchable patterning for studying cellular processes under spatiotemporal control
T. Zisis, J. Schwarz, M. Balles, M. Kretschmer, M. Nemethova, R.P. Chait, R. Hauschild, J. Lange, C.C. Guet, M.K. Sixt, S. Zahler, ACS Applied Materials and Interfaces 13 (2021) 35545–35560.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2021 | Published | Thesis | IST-REx-ID: 10307 | OA
Pathogenic Escherichia coli hijack the host immune response
K. Tomasek, Pathogenic Escherichia Coli Hijack the Host Immune Response, Institute of Science and Technology Austria, 2021.
[Published Version] View | Files available | DOI
 

2021 | Submitted | Preprint | IST-REx-ID: 10316 | OA
Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14
K. Tomasek, A.F. Leithner, I. Glatzová, M.S. Lukesch, C.C. Guet, M.K. Sixt, BioRxiv (n.d.).
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 

2021 | Published | Journal Article | IST-REx-ID: 10363 | OA
Rational engineering of an erythropoietin fusion protein to treat hypoxia
J. Lee, A. Vernet, N. Gruber, K.M. Kready, D.R. Burrill, J.C. Way, P.A. Silver, Protein Engineering, Design and Selection 34 (2021).
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 

2020 | Published | Journal Article | IST-REx-ID: 7569 | OA
The relation between crosstalk and gene regulation form revisited
R. Grah, T. Friedlander, PLOS Computational Biology 16 (2020).
[Published Version] View | Files available | DOI | WoS
 

2020 | Published | Journal Article | IST-REx-ID: 7652 | OA
Gene amplification as a form of population-level gene expression regulation
I. Tomanek, R. Grah, M. Lagator, A.M.C. Andersson, J.P. Bollback, G. Tkačik, C.C. Guet, Nature Ecology & Evolution 4 (2020) 612–625.
[Submitted Version] View | Files available | DOI | WoS
 

2020 | Published | Preprint | IST-REx-ID: 7675 | OA
Normative models of enhancer function
R. Grah, B. Zoller, G. Tkačik, BioRxiv (2020).
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 

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