Anđela Šarić
Saric Group
64 Publications
2024 | Published | Journal Article | IST-REx-ID: 15001 |

Self-replication of Aβ42 aggregates occurs on small and isolated fibril sites
S. Curk, J. Krausser, G. Meisl, D. Frenkel, S. Linse, T.C.T. Michaels, T.P.J. Knowles, A. Šarić, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
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S. Curk, J. Krausser, G. Meisl, D. Frenkel, S. Linse, T.C.T. Michaels, T.P.J. Knowles, A. Šarić, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
2023 | Published | Journal Article | IST-REx-ID: 12708 |

Steering self-organisation through confinement
Araújo NAM, Janssen LMC, Barois T, Boffetta G, Cohen I, Corbetta A, Dauchot O, Dijkstra M, Durham WM, Dussutour A, Garnier S, Gelderblom H, Golestanian R, Isa L, Koenderink GH, Löwen H, Metzler R, Polin M, Royall CP, Šarić A, Sengupta A, Sykes C, Trianni V, Tuval I, Vogel N, Yeomans JM, Zuriguel I, Marin A, Volpe G. 2023. Steering self-organisation through confinement. Soft Matter. 19, 1695–1704.
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Araújo NAM, Janssen LMC, Barois T, Boffetta G, Cohen I, Corbetta A, Dauchot O, Dijkstra M, Durham WM, Dussutour A, Garnier S, Gelderblom H, Golestanian R, Isa L, Koenderink GH, Löwen H, Metzler R, Polin M, Royall CP, Šarić A, Sengupta A, Sykes C, Trianni V, Tuval I, Vogel N, Yeomans JM, Zuriguel I, Marin A, Volpe G. 2023. Steering self-organisation through confinement. Soft Matter. 19, 1695–1704.
2023 | Published | Journal Article | IST-REx-ID: 12756 |

The patterned assembly and stepwise Vps4-mediated disassembly of composite ESCRT-III polymers drives archaeal cell division
F. Hurtig, T.C.Q. Burgers, A. Cezanne, X. Jiang, F.N. Mol, J. Traparić, A.A. Pulschen, T. Nierhaus, G. Tarrason-Risa, L. Harker-Kirschneck, J. Löwe, A. Šarić, R. Vlijm, B. Baum, Science Advances 9 (2023).
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F. Hurtig, T.C.Q. Burgers, A. Cezanne, X. Jiang, F.N. Mol, J. Traparić, A.A. Pulschen, T. Nierhaus, G. Tarrason-Risa, L. Harker-Kirschneck, J. Löwe, A. Šarić, R. Vlijm, B. Baum, Science Advances 9 (2023).
2023 | Published | Journal Article | IST-REx-ID: 13094 |

Wrapping pathways of anisotropic dumbbell particles by Giant Unilamellar Vesicles
A. Azadbakht, B. Meadowcroft, T. Varkevisser, A. Šarić, D.J. Kraft, Nano Letters 23 (2023) 4267–4273.
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A. Azadbakht, B. Meadowcroft, T. Varkevisser, A. Šarić, D.J. Kraft, Nano Letters 23 (2023) 4267–4273.
2023 | Published | Journal Article | IST-REx-ID: 13237
Amyloid formation as a protein phase transition
T.C.T. Michaels, D. Qian, A. Šarić, M. Vendruscolo, S. Linse, T.P.J. Knowles, Nature Reviews Physics 5 (2023) 379–397.
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T.C.T. Michaels, D. Qian, A. Šarić, M. Vendruscolo, S. Linse, T.P.J. Knowles, Nature Reviews Physics 5 (2023) 379–397.
2023 | Published | Journal Article | IST-REx-ID: 13971 |

Unconventional colloidal aggregation in chiral bacterial baths
D. Grober, I. Palaia, M.C. Ucar, E.B. Hannezo, A. Šarić, J.A. Palacci, Nature Physics 19 (2023) 1680–1688.
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D. Grober, I. Palaia, M.C. Ucar, E.B. Hannezo, A. Šarić, J.A. Palacci, Nature Physics 19 (2023) 1680–1688.
2023 | Research Data | IST-REx-ID: 14472 |

Stress granules plug and stabilize damaged endolysosomal membranes
C.E. Vanhille-Campos, A. Šarić, (2023).
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C.E. Vanhille-Campos, A. Šarić, (2023).
2023 | Epub ahead of print | Journal Article | IST-REx-ID: 14610 |

Stress granules plug and stabilize damaged endolysosomal membranes
C. Bussi, A. Mangiarotti, C.E. Vanhille-Campos, B. Aylan, E. Pellegrino, N. Athanasiadi, A. Fearns, A. Rodgers, T.M. Franzmann, A. Šarić, R. Dimova, M.G. Gutierrez, Nature (2023).
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C. Bussi, A. Mangiarotti, C.E. Vanhille-Campos, B. Aylan, E. Pellegrino, N. Athanasiadi, A. Fearns, A. Rodgers, T.M. Franzmann, A. Šarić, R. Dimova, M.G. Gutierrez, Nature (2023).
2023 | In Press | Journal Article | IST-REx-ID: 14844 |

Nonadditivity in interactions between three membrane-wrapped colloidal spheres
A. Azadbakht, B. Meadowcroft, J. Majek, A. Šarić, D.J. Kraft, Biophysical Journal (n.d.).
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A. Azadbakht, B. Meadowcroft, J. Majek, A. Šarić, D.J. Kraft, Biophysical Journal (n.d.).
2022 | Published | Journal Article | IST-REx-ID: 12251 |

Influence of denaturants on amyloid β42 aggregation kinetics
T. Weiffert, G. Meisl, S. Curk, R. Cukalevski, A. Šarić, T.P.J. Knowles, S. Linse, Frontiers in Neuroscience 16 (2022).
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T. Weiffert, G. Meisl, S. Curk, R. Cukalevski, A. Šarić, T.P.J. Knowles, S. Linse, Frontiers in Neuroscience 16 (2022).
2022 | Published | Journal Article | IST-REx-ID: 11400 |

Controlling cluster size in 2D phase-separating binary mixtures with specific interactions
I. Palaia, A. Šarić, The Journal of Chemical Physics 156 (2022).
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I. Palaia, A. Šarić, The Journal of Chemical Physics 156 (2022).
2022 | Published | Journal Article | IST-REx-ID: 11841 |

Adsorption free energy predicts amyloid protein nucleation rates
Z. Toprakcioglu, A. Kamada, T.C.T. Michaels, M. Xie, J. Krausser, J. Wei, A. Šarić, M. Vendruscolo, T.P.J. Knowles, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
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Z. Toprakcioglu, A. Kamada, T.C.T. Michaels, M. Xie, J. Krausser, J. Wei, A. Šarić, M. Vendruscolo, T.P.J. Knowles, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12108 |

Mechanochemical rules for shape-shifting filaments that remodel membranes
B. Meadowcroft, I. Palaia, A.K. Pfitzner, A. Roux, B. Baum, A. Šarić, Physical Review Letters 129 (2022).
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B. Meadowcroft, I. Palaia, A.K. Pfitzner, A. Roux, B. Baum, A. Šarić, Physical Review Letters 129 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12152 |

Modelling membrane reshaping by staged polymerization of ESCRT-III filaments
X. Jiang, L. Harker-Kirschneck, C.E. Vanhille-Campos, A.-K. Pfitzner, E. Lominadze, A. Roux, B. Baum, A. Šarić, PLOS Computational Biology 18 (2022).
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X. Jiang, L. Harker-Kirschneck, C.E. Vanhille-Campos, A.-K. Pfitzner, E. Lominadze, A. Roux, B. Baum, A. Šarić, PLOS Computational Biology 18 (2022).
2021 | Published | Journal Article | IST-REx-ID: 10124 |

Durotaxis of passive nanoparticles on elastic membranes
I. Palaia, A. Paraschiv, V. Debets, C. Storm, A. Šarić, ACS Nano (2021).
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I. Palaia, A. Paraschiv, V. Debets, C. Storm, A. Šarić, ACS Nano (2021).
2021 | Submitted | Preprint | IST-REx-ID: 10125 |

Physical mechanisms of ESCRT-III-driven cell division in archaea
L. Harker-Kirschneck, A.E. Hafner, T. Yao, A. Pulschen, F. Hurtig, C. Vanhille-Campos, D. Hryniuk, S. Culley, R. Henriques, B. Baum, A. Šarić, BioRxiv (n.d.).
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L. Harker-Kirschneck, A.E. Hafner, T. Yao, A. Pulschen, F. Hurtig, C. Vanhille-Campos, D. Hryniuk, S. Culley, R. Henriques, B. Baum, A. Šarić, BioRxiv (n.d.).
2021 | Published | Journal Article | IST-REx-ID: 10337
PLCγ1 promotes phase separation of T cell signaling components
L. Zeng, I. Palaia, A. Šarić, X. Su, Journal of Cell Biology 220 (2021).
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L. Zeng, I. Palaia, A. Šarić, X. Su, Journal of Cell Biology 220 (2021).
2021 | Published | Journal Article | IST-REx-ID: 10338 |

Physical modeling of multivalent interactions in the nuclear pore complex
L.K. Davis, A. Šarić, B.W. Hoogenboom, A. Zilman, Biophysical Journal 120 (2021) 1565–1577.
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L.K. Davis, A. Šarić, B.W. Hoogenboom, A. Zilman, Biophysical Journal 120 (2021) 1565–1577.
2021 | Published | Journal Article | IST-REx-ID: 10339 |

Modelling the dynamics of vesicle reshaping and scission under osmotic shocks
C. Vanhille-Campos, A. Šarić, Soft Matter 17 (2021) 3798–3806.
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C. Vanhille-Campos, A. Šarić, Soft Matter 17 (2021) 3798–3806.
2021 | Published | Journal Article | IST-REx-ID: 10340 |

Influence of membrane-cortex linkers on the extrusion of membrane tubes
A. Paraschiv, T.J. Lagny, C.V. Campos, E. Coudrier, P. Bassereau, A. Šarić, Biophysical Journal 120 (2021) 598–606.
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A. Paraschiv, T.J. Lagny, C.V. Campos, E. Coudrier, P. Bassereau, A. Šarić, Biophysical Journal 120 (2021) 598–606.
2020 | Published | Journal Article | IST-REx-ID: 10336 |

Physical mechanisms of amyloid nucleation on fluid membranes
J. Krausser, T.P.J. Knowles, A. Šarić, Proceedings of the National Academy of Sciences 117 (2020) 33090–33098.
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J. Krausser, T.P.J. Knowles, A. Šarić, Proceedings of the National Academy of Sciences 117 (2020) 33090–33098.
2020 | Published | Journal Article | IST-REx-ID: 10341 |

Characterising the diffusion of biological nanoparticles on fluid and cross-linked membranes
V.E. Debets, L.M.C. Janssen, A. Šarić, Soft Matter 16 (2020) 10628–10639.
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V.E. Debets, L.M.C. Janssen, A. Šarić, Soft Matter 16 (2020) 10628–10639.
2020 | Published | Journal Article | IST-REx-ID: 10342 |

On the shuttling across the blood-brain barrier via tubule formation: Mechanism and cargo avidity bias
X. Tian, D.M. Leite, E. Scarpa, S. Nyberg, G. Fullstone, J. Forth, D. Matias, A. Apriceno, A. Poma, A. Duro-Castano, M. Vuyyuru, L. Harker-Kirschneck, A. Šarić, Z. Zhang, P. Xiang, B. Fang, Y. Tian, L. Luo, L. Rizzello, G. Battaglia, Science Advances 6 (2020).
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X. Tian, D.M. Leite, E. Scarpa, S. Nyberg, G. Fullstone, J. Forth, D. Matias, A. Apriceno, A. Poma, A. Duro-Castano, M. Vuyyuru, L. Harker-Kirschneck, A. Šarić, Z. Zhang, P. Xiang, B. Fang, Y. Tian, L. Luo, L. Rizzello, G. Battaglia, Science Advances 6 (2020).
2020 | Published | Journal Article | IST-REx-ID: 10344 |

Exploring the design rules for efficient membrane-reshaping nanostructures
J.C. Forster, J. Krausser, M.R. Vuyyuru, B. Baum, A. Šarić, Physical Review Letters 125 (2020).
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J.C. Forster, J. Krausser, M.R. Vuyyuru, B. Baum, A. Šarić, Physical Review Letters 125 (2020).
2020 | Published | Journal Article | IST-REx-ID: 10346 |

Modeling fibrillogenesis of collagen-mimetic molecules
A.E. Hafner, N.G. Gyori, C.A. Bench, L.K. Davis, A. Šarić, Biophysical Journal 119 (2020) 1791–1799.
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A.E. Hafner, N.G. Gyori, C.A. Bench, L.K. Davis, A. Šarić, Biophysical Journal 119 (2020) 1791–1799.
2020 | Published | Journal Article | IST-REx-ID: 10347 |

Thermodynamic and kinetic design principles for amyloid-aggregation inhibitors
T.C.T. Michaels, A. Šarić, G. Meisl, G.T. Heller, S. Curk, P. Arosio, S. Linse, C.M. Dobson, M. Vendruscolo, T.P.J. Knowles, Proceedings of the National Academy of Sciences 117 (2020) 24251–24257.
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T.C.T. Michaels, A. Šarić, G. Meisl, G.T. Heller, S. Curk, P. Arosio, S. Linse, C.M. Dobson, M. Vendruscolo, T.P.J. Knowles, Proceedings of the National Academy of Sciences 117 (2020) 24251–24257.
2020 | Published | Journal Article | IST-REx-ID: 10348 |

An ESCRT-III polymerization sequence drives membrane deformation and fission
A.-K. Pfitzner, V. Mercier, X. Jiang, J. Moser von Filseck, B. Baum, A. Šarić, A. Roux, Cell 182 (2020) 1140–1155.e18.
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A.-K. Pfitzner, V. Mercier, X. Jiang, J. Moser von Filseck, B. Baum, A. Šarić, A. Roux, Cell 182 (2020) 1140–1155.e18.
2020 | Published | Journal Article | IST-REx-ID: 10349 |

The proteasome controls ESCRT-III–mediated cell division in an archaeon
Tarrason Risa G, Hurtig F, Bray S, Hafner AE, Harker-Kirschneck L, Faull P, Davis C, Papatziamou D, Mutavchiev DR, Fan C, Meneguello L, Arashiro Pulschen A, Dey G, Culley S, Kilkenny M, Souza DP, Pellegrini L, de Bruin RAM, Henriques R, Snijders AP, Šarić A, Lindås A-C, Robinson NP, Baum B. 2020. The proteasome controls ESCRT-III–mediated cell division in an archaeon. Science. 369(6504).
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Tarrason Risa G, Hurtig F, Bray S, Hafner AE, Harker-Kirschneck L, Faull P, Davis C, Papatziamou D, Mutavchiev DR, Fan C, Meneguello L, Arashiro Pulschen A, Dey G, Culley S, Kilkenny M, Souza DP, Pellegrini L, de Bruin RAM, Henriques R, Snijders AP, Šarić A, Lindås A-C, Robinson NP, Baum B. 2020. The proteasome controls ESCRT-III–mediated cell division in an archaeon. Science. 369(6504).
2020 | Published | Journal Article | IST-REx-ID: 10350 |

Identification of on- and off-pathway oligomers in amyloid fibril formation
A.J. Dear, G. Meisl, A. Šarić, T.C.T. Michaels, M. Kjaergaard, S. Linse, T.P.J. Knowles, Chemical Science 11 (2020) 6236–6247.
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A.J. Dear, G. Meisl, A. Šarić, T.C.T. Michaels, M. Kjaergaard, S. Linse, T.P.J. Knowles, Chemical Science 11 (2020) 6236–6247.
2020 | Published | Journal Article | IST-REx-ID: 10351 |

Dynamics of oligomer populations formed during the aggregation of Alzheimer’s Aβ42 peptide
T.C.T. Michaels, A. Šarić, S. Curk, K. Bernfur, P. Arosio, G. Meisl, A.J. Dear, S.I.A. Cohen, C.M. Dobson, M. Vendruscolo, S. Linse, T.P.J. Knowles, Nature Chemistry 12 (2020) 445–451.
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T.C.T. Michaels, A. Šarić, S. Curk, K. Bernfur, P. Arosio, G. Meisl, A.J. Dear, S.I.A. Cohen, C.M. Dobson, M. Vendruscolo, S. Linse, T.P.J. Knowles, Nature Chemistry 12 (2020) 445–451.
2020 | Published | Journal Article | IST-REx-ID: 10352 |

Intrinsically disordered nuclear pore proteins show ideal-polymer morphologies and dynamics
L.K. Davis, I.J. Ford, A. Šarić, B.W. Hoogenboom, Physical Review E 101 (2020).
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L.K. Davis, I.J. Ford, A. Šarić, B.W. Hoogenboom, Physical Review E 101 (2020).
2020 | Published | Journal Article | IST-REx-ID: 10353 |

Dynamic clustering regulates activity of mechanosensitive membrane channels
A. Paraschiv, S. Hegde, R. Ganti, T. Pilizota, A. Šarić, Physical Review Letters 124 (2020).
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A. Paraschiv, S. Hegde, R. Ganti, T. Pilizota, A. Šarić, Physical Review Letters 124 (2020).
2019 | Published | Journal Article | IST-REx-ID: 10354 |

Changes in ESCRT-III filament geometry drive membrane remodelling and fission in silico
L. Harker-Kirschneck, B. Baum, A. Šarić, BMC Biology 17 (2019).
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L. Harker-Kirschneck, B. Baum, A. Šarić, BMC Biology 17 (2019).
2019 | Published | Journal Article | IST-REx-ID: 10355 |

Minimal coarse-grained models for molecular self-organisation in biology
A.E. Hafner, J. Krausser, A. Šarić, Current Opinion in Structural Biology 58 (2019) 43–52.
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A.E. Hafner, J. Krausser, A. Šarić, Current Opinion in Structural Biology 58 (2019) 43–52.
2018 | Published | Journal Article | IST-REx-ID: 10357
Statistical mechanics of globular oligomer formation by protein molecules
A.J. Dear, A. Šarić, T.C.T. Michaels, C.M. Dobson, T.P.J. Knowles, The Journal of Physical Chemistry B 122 (2018) 11721–11730.
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A.J. Dear, A. Šarić, T.C.T. Michaels, C.M. Dobson, T.P.J. Knowles, The Journal of Physical Chemistry B 122 (2018) 11721–11730.
2018 | Published | Journal Article | IST-REx-ID: 10358 |

Reaction rate theory for supramolecular kinetics: application to protein aggregation
T.C.T. Michaels, L.X. Liu, S. Curk, P.G. Bolhuis, A. Šarić, T.P.J. Knowles, Molecular Physics 116 (2018) 3055–3065.
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T.C.T. Michaels, L.X. Liu, S. Curk, P.G. Bolhuis, A. Šarić, T.P.J. Knowles, Molecular Physics 116 (2018) 3055–3065.
2018 | Published | Journal Article | IST-REx-ID: 10359 |

Controlling cargo trafficking in multicomponent membranes
T. Curk, P. Wirnsberger, J. Dobnikar, D. Frenkel, A. Šarić, Nano Letters 18 (2018) 5350–5356.
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T. Curk, P. Wirnsberger, J. Dobnikar, D. Frenkel, A. Šarić, Nano Letters 18 (2018) 5350–5356.
2018 | Published | Journal Article | IST-REx-ID: 10360
Distinct thermodynamic signatures of oligomer generation in the aggregation of the amyloid-β peptide
S.I.A. Cohen, R. Cukalevski, T.C.T. Michaels, A. Šarić, M. Törnquist, M. Vendruscolo, C.M. Dobson, A.K. Buell, T.P.J. Knowles, S. Linse, Nature Chemistry 10 (2018) 523–531.
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S.I.A. Cohen, R. Cukalevski, T.C.T. Michaels, A. Šarić, M. Törnquist, M. Vendruscolo, C.M. Dobson, A.K. Buell, T.P.J. Knowles, S. Linse, Nature Chemistry 10 (2018) 523–531.
2018 | Published | Journal Article | IST-REx-ID: 10361
Chemical kinetics for bridging molecular mechanisms and macroscopic measurements of amyloid fibril formation
T.C.T. Michaels, A. Šarić, J. Habchi, S. Chia, G. Meisl, M. Vendruscolo, C.M. Dobson, T.P.J. Knowles, Annual Review of Physical Chemistry 69 (2018) 273–298.
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T.C.T. Michaels, A. Šarić, J. Habchi, S. Chia, G. Meisl, M. Vendruscolo, C.M. Dobson, T.P.J. Knowles, Annual Review of Physical Chemistry 69 (2018) 273–298.
2018 | Published | Journal Article | IST-REx-ID: 10362
A Programmable DNA origami platform for organizing intrinsically disordered nucleoporins within nanopore confinement
P.D.E. Fisher, Q. Shen, B. Akpinar, L.K. Davis, K.K.H. Chung, D. Baddeley, A. Šarić, T.J. Melia, B.W. Hoogenboom, C. Lin, C.P. Lusk, ACS Nano 12 (2018) 1508–1518.
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P.D.E. Fisher, Q. Shen, B. Akpinar, L.K. Davis, K.K.H. Chung, D. Baddeley, A. Šarić, T.J. Melia, B.W. Hoogenboom, C. Lin, C.P. Lusk, ACS Nano 12 (2018) 1508–1518.
2017 | Published | Journal Article | IST-REx-ID: 10126 |

Curvature mediated interactions in highly curved membranes
A. Vahid Belarghou, A. Šarić, T. Idema, Biophysical Journal 112 (2017).
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A. Vahid Belarghou, A. Šarić, T. Idema, Biophysical Journal 112 (2017).
2017 | Published | Journal Article | IST-REx-ID: 10369 |

Long-range organization of membrane-curving proteins
M. Simunovic, A. Šarić, J.M. Henderson, K.Y.C. Lee, G.A. Voth, ACS Central Science 3 (2017) 1246–1253.
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M. Simunovic, A. Šarić, J.M. Henderson, K.Y.C. Lee, G.A. Voth, ACS Central Science 3 (2017) 1246–1253.
2017 | Published | Journal Article | IST-REx-ID: 10370 |

Mechanical force induces mitochondrial fission
S.C.J. Helle, Q. Feng, M.J. Aebersold, L. Hirt, R.R. Grüter, A. Vahid, A. Sirianni, S. Mostowy, J.G. Snedeker, A. Šarić, T. Idema, T. Zambelli, B. Kornmann, ELife 6 (2017).
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S.C.J. Helle, Q. Feng, M.J. Aebersold, L. Hirt, R.R. Grüter, A. Vahid, A. Sirianni, S. Mostowy, J.G. Snedeker, A. Šarić, T. Idema, T. Zambelli, B. Kornmann, ELife 6 (2017).
2017 | Published | Journal Article | IST-REx-ID: 10373 |

Numerical evidence for thermally induced monopoles
P. Wirnsberger, D. Fijan, R.A. Lightwood, A. Šarić, C. Dellago, D. Frenkel, Proceedings of the National Academy of Sciences 114 (2017) 4911–4914.
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P. Wirnsberger, D. Fijan, R.A. Lightwood, A. Šarić, C. Dellago, D. Frenkel, Proceedings of the National Academy of Sciences 114 (2017) 4911–4914.
2017 | Published | Journal Article | IST-REx-ID: 10374 |

Scaling behaviour and rate-determining steps in filamentous self-assembly
G. Meisl, L. Rajah, S.A.I. Cohen, M. Pfammatter, A. Šarić, E. Hellstrand, A.K. Buell, A. Aguzzi, S. Linse, M. Vendruscolo, C.M. Dobson, T.P.J. Knowles, Chemical Science 8 (2017) 7087–7097.
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G. Meisl, L. Rajah, S.A.I. Cohen, M. Pfammatter, A. Šarić, E. Hellstrand, A.K. Buell, A. Aguzzi, S. Linse, M. Vendruscolo, C.M. Dobson, T.P.J. Knowles, Chemical Science 8 (2017) 7087–7097.
2017 | Published | Journal Article | IST-REx-ID: 10375 |

Curvature variation controls particle aggregation on fluid vesicles
A. Vahid, A. Šarić, T. Idema, Soft Matter 13 (2017) 4924–4930.
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A. Vahid, A. Šarić, T. Idema, Soft Matter 13 (2017) 4924–4930.
2016 | Published | Journal Article | IST-REx-ID: 10376 |

Kinetics of spontaneous filament nucleation via oligomers: Insights from theory and simulation
A. Šarić, T.C.T. Michaels, A. Zaccone, T.P.J. Knowles, D. Frenkel, The Journal of Chemical Physics 145 (2016).
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A. Šarić, T.C.T. Michaels, A. Zaccone, T.P.J. Knowles, D. Frenkel, The Journal of Chemical Physics 145 (2016).
2016 | Published | Journal Article | IST-REx-ID: 10377 |

Lipid membrane-mediated attraction between curvature inducing objects
C. van der Wel, A. Vahid, A. Šarić, T. Idema, D. Heinrich, D.J. Kraft, Scientific Reports 6 (2016).
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C. van der Wel, A. Vahid, A. Šarić, T. Idema, D. Heinrich, D.J. Kraft, Scientific Reports 6 (2016).
2016 | Published | Journal Article | IST-REx-ID: 10378 |

Physical determinants of the self-replication of protein fibrils
A. Šarić, A.K. Buell, G. Meisl, T.C.T. Michaels, C.M. Dobson, S. Linse, T.P.J. Knowles, D. Frenkel, Nature Physics 12 (2016) 874–880.
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A. Šarić, A.K. Buell, G. Meisl, T.C.T. Michaels, C.M. Dobson, S. Linse, T.P.J. Knowles, D. Frenkel, Nature Physics 12 (2016) 874–880.
2016 | Published | Journal Article | IST-REx-ID: 10380 |

Non-equilibrium simulations of thermally induced electric fields in water
P. Wirnsberger, D. Fijan, A. Šarić, M. Neumann, C. Dellago, D. Frenkel, The Journal of Chemical Physics 144 (2016).
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P. Wirnsberger, D. Fijan, A. Šarić, M. Neumann, C. Dellago, D. Frenkel, The Journal of Chemical Physics 144 (2016).
2016 | Published | Journal Article | IST-REx-ID: 10381 |

Melting transition in lipid vesicles functionalised by mobile DNA linkers
S.J. Bachmann, J. Kotar, L. Parolini, A. Šarić, P. Cicuta, L. Di Michele, B.M. Mognetti, Soft Matter 12 (2016) 7804–7817.
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S.J. Bachmann, J. Kotar, L. Parolini, A. Šarić, P. Cicuta, L. Di Michele, B.M. Mognetti, Soft Matter 12 (2016) 7804–7817.
2014 | Published | Journal Article | IST-REx-ID: 10382 |

Crucial role of nonspecific interactions in amyloid nucleation
A. Šarić, Y.C. Chebaro, T.P.J. Knowles, D. Frenkel, Proceedings of the National Academy of Sciences 111 (2014) 17869–17874.
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A. Šarić, Y.C. Chebaro, T.P.J. Knowles, D. Frenkel, Proceedings of the National Academy of Sciences 111 (2014) 17869–17874.
2014 | Published | Journal Article | IST-REx-ID: 10383 |

Anomalous thermomechanical properties of a self-propelled colloidal fluid
S.A. Mallory, A. Šarić, C. Valeriani, A. Cacciuto, Physical Review E 89 (2014).
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S.A. Mallory, A. Šarić, C. Valeriani, A. Cacciuto, Physical Review E 89 (2014).
2013 | Published | Journal Article | IST-REx-ID: 10384 |

Living clusters and crystals from low-density suspensions of active colloids
B.M. Mognetti, A. Šarić, S. Angioletti-Uberti, A. Cacciuto, C. Valeriani, D. Frenkel, Physical Review Letters 111 (2013).
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B.M. Mognetti, A. Šarić, S. Angioletti-Uberti, A. Cacciuto, C. Valeriani, D. Frenkel, Physical Review Letters 111 (2013).
2013 | Published | Journal Article | IST-REx-ID: 10385
Collapsing nanoparticle-laden nanotubes
J.A. Napoli, A. Šarić, A. Cacciuto, Soft Matter 9 (2013) 8881–8886.
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J.A. Napoli, A. Šarić, A. Cacciuto, Soft Matter 9 (2013) 8881–8886.
2013 | Published | Journal Article | IST-REx-ID: 10386
Self-assembly of nanoparticles adsorbed on fluid and elastic membranes
A. Šarić, A. Cacciuto, Soft Matter 9 (2013).
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A. Šarić, A. Cacciuto, Soft Matter 9 (2013).
2012 | Published | Journal Article | IST-REx-ID: 10387 |

Mechanism of membrane tube formation induced by adhesive nanocomponents
A. Šarić, A. Cacciuto, Physical Review Letters 109 (2012).
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A. Šarić, A. Cacciuto, Physical Review Letters 109 (2012).
2012 | Published | Journal Article | IST-REx-ID: 10388 |

Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles
A. Šarić, A. Cacciuto, Physical Review Letters 108 (2012).
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A. Šarić, A. Cacciuto, Physical Review Letters 108 (2012).
2011 | Published | Journal Article | IST-REx-ID: 10389 |

Soft elastic surfaces as a platform for particle self-assembly
A. Šarić, A. Cacciuto, Soft Matter 7 (2011).
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A. Šarić, A. Cacciuto, Soft Matter 7 (2011).
2010 | Published | Journal Article | IST-REx-ID: 10127 |

Particle self-assembly on soft elastic shells
A. Šarić, A. Cacciuto, Soft Matter 7 (2010) 1874–1878.
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A. Šarić, A. Cacciuto, Soft Matter 7 (2010) 1874–1878.
2010 | Published | Journal Article | IST-REx-ID: 10128
Quantum mechanical study of secondary structure formation in protected dipeptides
A. Šarić, T. Hrenar, M. Mališ, N. Došlić, Physical Chemistry Chemical Physics 12 (2010) 4678–4685.
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A. Šarić, T. Hrenar, M. Mališ, N. Došlić, Physical Chemistry Chemical Physics 12 (2010) 4678–4685.
2010 | Published | Journal Article | IST-REx-ID: 10390 |

Packing of soft asymmetric dumbbells
A. Šarić, B. Bozorgui, A. Cacciuto, The Journal of Physical Chemistry B 115 (2010) 7182–7189.
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A. Šarić, B. Bozorgui, A. Cacciuto, The Journal of Physical Chemistry B 115 (2010) 7182–7189.
2010 | Published | Journal Article | IST-REx-ID: 10391 |

Effective elasticity of a flexible filament bound to a deformable cylindrical surface
A. Šarić, J.C. Pàmies, A. Cacciuto, Physical Review Letters 104 (2010).
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A. Šarić, J.C. Pàmies, A. Cacciuto, Physical Review Letters 104 (2010).
2008 | Published | Journal Article | IST-REx-ID: 10392
Density functional study of protonated formylmetallocenes
A. Šarić, V. Vrček, M. Bühl, Organometallics 27 (2008) 394–401.
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A. Šarić, V. Vrček, M. Bühl, Organometallics 27 (2008) 394–401.
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64 Publications
2024 | Published | Journal Article | IST-REx-ID: 15001 |

Self-replication of Aβ42 aggregates occurs on small and isolated fibril sites
S. Curk, J. Krausser, G. Meisl, D. Frenkel, S. Linse, T.C.T. Michaels, T.P.J. Knowles, A. Šarić, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
[Published Version]
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S. Curk, J. Krausser, G. Meisl, D. Frenkel, S. Linse, T.C.T. Michaels, T.P.J. Knowles, A. Šarić, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
2023 | Published | Journal Article | IST-REx-ID: 12708 |

Steering self-organisation through confinement
Araújo NAM, Janssen LMC, Barois T, Boffetta G, Cohen I, Corbetta A, Dauchot O, Dijkstra M, Durham WM, Dussutour A, Garnier S, Gelderblom H, Golestanian R, Isa L, Koenderink GH, Löwen H, Metzler R, Polin M, Royall CP, Šarić A, Sengupta A, Sykes C, Trianni V, Tuval I, Vogel N, Yeomans JM, Zuriguel I, Marin A, Volpe G. 2023. Steering self-organisation through confinement. Soft Matter. 19, 1695–1704.
[Published Version]
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Araújo NAM, Janssen LMC, Barois T, Boffetta G, Cohen I, Corbetta A, Dauchot O, Dijkstra M, Durham WM, Dussutour A, Garnier S, Gelderblom H, Golestanian R, Isa L, Koenderink GH, Löwen H, Metzler R, Polin M, Royall CP, Šarić A, Sengupta A, Sykes C, Trianni V, Tuval I, Vogel N, Yeomans JM, Zuriguel I, Marin A, Volpe G. 2023. Steering self-organisation through confinement. Soft Matter. 19, 1695–1704.
2023 | Published | Journal Article | IST-REx-ID: 12756 |

The patterned assembly and stepwise Vps4-mediated disassembly of composite ESCRT-III polymers drives archaeal cell division
F. Hurtig, T.C.Q. Burgers, A. Cezanne, X. Jiang, F.N. Mol, J. Traparić, A.A. Pulschen, T. Nierhaus, G. Tarrason-Risa, L. Harker-Kirschneck, J. Löwe, A. Šarić, R. Vlijm, B. Baum, Science Advances 9 (2023).
[Published Version]
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F. Hurtig, T.C.Q. Burgers, A. Cezanne, X. Jiang, F.N. Mol, J. Traparić, A.A. Pulschen, T. Nierhaus, G. Tarrason-Risa, L. Harker-Kirschneck, J. Löwe, A. Šarić, R. Vlijm, B. Baum, Science Advances 9 (2023).
2023 | Published | Journal Article | IST-REx-ID: 13094 |

Wrapping pathways of anisotropic dumbbell particles by Giant Unilamellar Vesicles
A. Azadbakht, B. Meadowcroft, T. Varkevisser, A. Šarić, D.J. Kraft, Nano Letters 23 (2023) 4267–4273.
[Published Version]
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A. Azadbakht, B. Meadowcroft, T. Varkevisser, A. Šarić, D.J. Kraft, Nano Letters 23 (2023) 4267–4273.
2023 | Published | Journal Article | IST-REx-ID: 13237
Amyloid formation as a protein phase transition
T.C.T. Michaels, D. Qian, A. Šarić, M. Vendruscolo, S. Linse, T.P.J. Knowles, Nature Reviews Physics 5 (2023) 379–397.
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T.C.T. Michaels, D. Qian, A. Šarić, M. Vendruscolo, S. Linse, T.P.J. Knowles, Nature Reviews Physics 5 (2023) 379–397.
2023 | Published | Journal Article | IST-REx-ID: 13971 |

Unconventional colloidal aggregation in chiral bacterial baths
D. Grober, I. Palaia, M.C. Ucar, E.B. Hannezo, A. Šarić, J.A. Palacci, Nature Physics 19 (2023) 1680–1688.
[Published Version]
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D. Grober, I. Palaia, M.C. Ucar, E.B. Hannezo, A. Šarić, J.A. Palacci, Nature Physics 19 (2023) 1680–1688.
2023 | Research Data | IST-REx-ID: 14472 |

Stress granules plug and stabilize damaged endolysosomal membranes
C.E. Vanhille-Campos, A. Šarić, (2023).
[Published Version]
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C.E. Vanhille-Campos, A. Šarić, (2023).
2023 | Epub ahead of print | Journal Article | IST-REx-ID: 14610 |

Stress granules plug and stabilize damaged endolysosomal membranes
C. Bussi, A. Mangiarotti, C.E. Vanhille-Campos, B. Aylan, E. Pellegrino, N. Athanasiadi, A. Fearns, A. Rodgers, T.M. Franzmann, A. Šarić, R. Dimova, M.G. Gutierrez, Nature (2023).
[Published Version]
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C. Bussi, A. Mangiarotti, C.E. Vanhille-Campos, B. Aylan, E. Pellegrino, N. Athanasiadi, A. Fearns, A. Rodgers, T.M. Franzmann, A. Šarić, R. Dimova, M.G. Gutierrez, Nature (2023).
2023 | In Press | Journal Article | IST-REx-ID: 14844 |

Nonadditivity in interactions between three membrane-wrapped colloidal spheres
A. Azadbakht, B. Meadowcroft, J. Majek, A. Šarić, D.J. Kraft, Biophysical Journal (n.d.).
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A. Azadbakht, B. Meadowcroft, J. Majek, A. Šarić, D.J. Kraft, Biophysical Journal (n.d.).
2022 | Published | Journal Article | IST-REx-ID: 12251 |

Influence of denaturants on amyloid β42 aggregation kinetics
T. Weiffert, G. Meisl, S. Curk, R. Cukalevski, A. Šarić, T.P.J. Knowles, S. Linse, Frontiers in Neuroscience 16 (2022).
[Published Version]
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T. Weiffert, G. Meisl, S. Curk, R. Cukalevski, A. Šarić, T.P.J. Knowles, S. Linse, Frontiers in Neuroscience 16 (2022).
2022 | Published | Journal Article | IST-REx-ID: 11400 |

Controlling cluster size in 2D phase-separating binary mixtures with specific interactions
I. Palaia, A. Šarić, The Journal of Chemical Physics 156 (2022).
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I. Palaia, A. Šarić, The Journal of Chemical Physics 156 (2022).
2022 | Published | Journal Article | IST-REx-ID: 11841 |

Adsorption free energy predicts amyloid protein nucleation rates
Z. Toprakcioglu, A. Kamada, T.C.T. Michaels, M. Xie, J. Krausser, J. Wei, A. Šarić, M. Vendruscolo, T.P.J. Knowles, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
[Published Version]
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Z. Toprakcioglu, A. Kamada, T.C.T. Michaels, M. Xie, J. Krausser, J. Wei, A. Šarić, M. Vendruscolo, T.P.J. Knowles, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12108 |

Mechanochemical rules for shape-shifting filaments that remodel membranes
B. Meadowcroft, I. Palaia, A.K. Pfitzner, A. Roux, B. Baum, A. Šarić, Physical Review Letters 129 (2022).
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B. Meadowcroft, I. Palaia, A.K. Pfitzner, A. Roux, B. Baum, A. Šarić, Physical Review Letters 129 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12152 |

Modelling membrane reshaping by staged polymerization of ESCRT-III filaments
X. Jiang, L. Harker-Kirschneck, C.E. Vanhille-Campos, A.-K. Pfitzner, E. Lominadze, A. Roux, B. Baum, A. Šarić, PLOS Computational Biology 18 (2022).
[Published Version]
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X. Jiang, L. Harker-Kirschneck, C.E. Vanhille-Campos, A.-K. Pfitzner, E. Lominadze, A. Roux, B. Baum, A. Šarić, PLOS Computational Biology 18 (2022).
2021 | Published | Journal Article | IST-REx-ID: 10124 |

Durotaxis of passive nanoparticles on elastic membranes
I. Palaia, A. Paraschiv, V. Debets, C. Storm, A. Šarić, ACS Nano (2021).
[Preprint]
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I. Palaia, A. Paraschiv, V. Debets, C. Storm, A. Šarić, ACS Nano (2021).
2021 | Submitted | Preprint | IST-REx-ID: 10125 |

Physical mechanisms of ESCRT-III-driven cell division in archaea
L. Harker-Kirschneck, A.E. Hafner, T. Yao, A. Pulschen, F. Hurtig, C. Vanhille-Campos, D. Hryniuk, S. Culley, R. Henriques, B. Baum, A. Šarić, BioRxiv (n.d.).
[Preprint]
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L. Harker-Kirschneck, A.E. Hafner, T. Yao, A. Pulschen, F. Hurtig, C. Vanhille-Campos, D. Hryniuk, S. Culley, R. Henriques, B. Baum, A. Šarić, BioRxiv (n.d.).
2021 | Published | Journal Article | IST-REx-ID: 10337
PLCγ1 promotes phase separation of T cell signaling components
L. Zeng, I. Palaia, A. Šarić, X. Su, Journal of Cell Biology 220 (2021).
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L. Zeng, I. Palaia, A. Šarić, X. Su, Journal of Cell Biology 220 (2021).
2021 | Published | Journal Article | IST-REx-ID: 10338 |

Physical modeling of multivalent interactions in the nuclear pore complex
L.K. Davis, A. Šarić, B.W. Hoogenboom, A. Zilman, Biophysical Journal 120 (2021) 1565–1577.
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L.K. Davis, A. Šarić, B.W. Hoogenboom, A. Zilman, Biophysical Journal 120 (2021) 1565–1577.
2021 | Published | Journal Article | IST-REx-ID: 10339 |

Modelling the dynamics of vesicle reshaping and scission under osmotic shocks
C. Vanhille-Campos, A. Šarić, Soft Matter 17 (2021) 3798–3806.
[Published Version]
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C. Vanhille-Campos, A. Šarić, Soft Matter 17 (2021) 3798–3806.
2021 | Published | Journal Article | IST-REx-ID: 10340 |

Influence of membrane-cortex linkers on the extrusion of membrane tubes
A. Paraschiv, T.J. Lagny, C.V. Campos, E. Coudrier, P. Bassereau, A. Šarić, Biophysical Journal 120 (2021) 598–606.
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A. Paraschiv, T.J. Lagny, C.V. Campos, E. Coudrier, P. Bassereau, A. Šarić, Biophysical Journal 120 (2021) 598–606.
2020 | Published | Journal Article | IST-REx-ID: 10336 |

Physical mechanisms of amyloid nucleation on fluid membranes
J. Krausser, T.P.J. Knowles, A. Šarić, Proceedings of the National Academy of Sciences 117 (2020) 33090–33098.
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J. Krausser, T.P.J. Knowles, A. Šarić, Proceedings of the National Academy of Sciences 117 (2020) 33090–33098.
2020 | Published | Journal Article | IST-REx-ID: 10341 |

Characterising the diffusion of biological nanoparticles on fluid and cross-linked membranes
V.E. Debets, L.M.C. Janssen, A. Šarić, Soft Matter 16 (2020) 10628–10639.
[Published Version]
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V.E. Debets, L.M.C. Janssen, A. Šarić, Soft Matter 16 (2020) 10628–10639.
2020 | Published | Journal Article | IST-REx-ID: 10342 |

On the shuttling across the blood-brain barrier via tubule formation: Mechanism and cargo avidity bias
X. Tian, D.M. Leite, E. Scarpa, S. Nyberg, G. Fullstone, J. Forth, D. Matias, A. Apriceno, A. Poma, A. Duro-Castano, M. Vuyyuru, L. Harker-Kirschneck, A. Šarić, Z. Zhang, P. Xiang, B. Fang, Y. Tian, L. Luo, L. Rizzello, G. Battaglia, Science Advances 6 (2020).
[Published Version]
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X. Tian, D.M. Leite, E. Scarpa, S. Nyberg, G. Fullstone, J. Forth, D. Matias, A. Apriceno, A. Poma, A. Duro-Castano, M. Vuyyuru, L. Harker-Kirschneck, A. Šarić, Z. Zhang, P. Xiang, B. Fang, Y. Tian, L. Luo, L. Rizzello, G. Battaglia, Science Advances 6 (2020).
2020 | Published | Journal Article | IST-REx-ID: 10344 |

Exploring the design rules for efficient membrane-reshaping nanostructures
J.C. Forster, J. Krausser, M.R. Vuyyuru, B. Baum, A. Šarić, Physical Review Letters 125 (2020).
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J.C. Forster, J. Krausser, M.R. Vuyyuru, B. Baum, A. Šarić, Physical Review Letters 125 (2020).
2020 | Published | Journal Article | IST-REx-ID: 10346 |

Modeling fibrillogenesis of collagen-mimetic molecules
A.E. Hafner, N.G. Gyori, C.A. Bench, L.K. Davis, A. Šarić, Biophysical Journal 119 (2020) 1791–1799.
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A.E. Hafner, N.G. Gyori, C.A. Bench, L.K. Davis, A. Šarić, Biophysical Journal 119 (2020) 1791–1799.
2020 | Published | Journal Article | IST-REx-ID: 10347 |

Thermodynamic and kinetic design principles for amyloid-aggregation inhibitors
T.C.T. Michaels, A. Šarić, G. Meisl, G.T. Heller, S. Curk, P. Arosio, S. Linse, C.M. Dobson, M. Vendruscolo, T.P.J. Knowles, Proceedings of the National Academy of Sciences 117 (2020) 24251–24257.
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T.C.T. Michaels, A. Šarić, G. Meisl, G.T. Heller, S. Curk, P. Arosio, S. Linse, C.M. Dobson, M. Vendruscolo, T.P.J. Knowles, Proceedings of the National Academy of Sciences 117 (2020) 24251–24257.
2020 | Published | Journal Article | IST-REx-ID: 10348 |

An ESCRT-III polymerization sequence drives membrane deformation and fission
A.-K. Pfitzner, V. Mercier, X. Jiang, J. Moser von Filseck, B. Baum, A. Šarić, A. Roux, Cell 182 (2020) 1140–1155.e18.
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A.-K. Pfitzner, V. Mercier, X. Jiang, J. Moser von Filseck, B. Baum, A. Šarić, A. Roux, Cell 182 (2020) 1140–1155.e18.
2020 | Published | Journal Article | IST-REx-ID: 10349 |

The proteasome controls ESCRT-III–mediated cell division in an archaeon
Tarrason Risa G, Hurtig F, Bray S, Hafner AE, Harker-Kirschneck L, Faull P, Davis C, Papatziamou D, Mutavchiev DR, Fan C, Meneguello L, Arashiro Pulschen A, Dey G, Culley S, Kilkenny M, Souza DP, Pellegrini L, de Bruin RAM, Henriques R, Snijders AP, Šarić A, Lindås A-C, Robinson NP, Baum B. 2020. The proteasome controls ESCRT-III–mediated cell division in an archaeon. Science. 369(6504).
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Tarrason Risa G, Hurtig F, Bray S, Hafner AE, Harker-Kirschneck L, Faull P, Davis C, Papatziamou D, Mutavchiev DR, Fan C, Meneguello L, Arashiro Pulschen A, Dey G, Culley S, Kilkenny M, Souza DP, Pellegrini L, de Bruin RAM, Henriques R, Snijders AP, Šarić A, Lindås A-C, Robinson NP, Baum B. 2020. The proteasome controls ESCRT-III–mediated cell division in an archaeon. Science. 369(6504).
2020 | Published | Journal Article | IST-REx-ID: 10350 |

Identification of on- and off-pathway oligomers in amyloid fibril formation
A.J. Dear, G. Meisl, A. Šarić, T.C.T. Michaels, M. Kjaergaard, S. Linse, T.P.J. Knowles, Chemical Science 11 (2020) 6236–6247.
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A.J. Dear, G. Meisl, A. Šarić, T.C.T. Michaels, M. Kjaergaard, S. Linse, T.P.J. Knowles, Chemical Science 11 (2020) 6236–6247.
2020 | Published | Journal Article | IST-REx-ID: 10351 |

Dynamics of oligomer populations formed during the aggregation of Alzheimer’s Aβ42 peptide
T.C.T. Michaels, A. Šarić, S. Curk, K. Bernfur, P. Arosio, G. Meisl, A.J. Dear, S.I.A. Cohen, C.M. Dobson, M. Vendruscolo, S. Linse, T.P.J. Knowles, Nature Chemistry 12 (2020) 445–451.
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T.C.T. Michaels, A. Šarić, S. Curk, K. Bernfur, P. Arosio, G. Meisl, A.J. Dear, S.I.A. Cohen, C.M. Dobson, M. Vendruscolo, S. Linse, T.P.J. Knowles, Nature Chemistry 12 (2020) 445–451.
2020 | Published | Journal Article | IST-REx-ID: 10352 |

Intrinsically disordered nuclear pore proteins show ideal-polymer morphologies and dynamics
L.K. Davis, I.J. Ford, A. Šarić, B.W. Hoogenboom, Physical Review E 101 (2020).
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L.K. Davis, I.J. Ford, A. Šarić, B.W. Hoogenboom, Physical Review E 101 (2020).
2020 | Published | Journal Article | IST-REx-ID: 10353 |

Dynamic clustering regulates activity of mechanosensitive membrane channels
A. Paraschiv, S. Hegde, R. Ganti, T. Pilizota, A. Šarić, Physical Review Letters 124 (2020).
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A. Paraschiv, S. Hegde, R. Ganti, T. Pilizota, A. Šarić, Physical Review Letters 124 (2020).
2019 | Published | Journal Article | IST-REx-ID: 10354 |

Changes in ESCRT-III filament geometry drive membrane remodelling and fission in silico
L. Harker-Kirschneck, B. Baum, A. Šarić, BMC Biology 17 (2019).
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L. Harker-Kirschneck, B. Baum, A. Šarić, BMC Biology 17 (2019).
2019 | Published | Journal Article | IST-REx-ID: 10355 |

Minimal coarse-grained models for molecular self-organisation in biology
A.E. Hafner, J. Krausser, A. Šarić, Current Opinion in Structural Biology 58 (2019) 43–52.
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A.E. Hafner, J. Krausser, A. Šarić, Current Opinion in Structural Biology 58 (2019) 43–52.
2018 | Published | Journal Article | IST-REx-ID: 10357
Statistical mechanics of globular oligomer formation by protein molecules
A.J. Dear, A. Šarić, T.C.T. Michaels, C.M. Dobson, T.P.J. Knowles, The Journal of Physical Chemistry B 122 (2018) 11721–11730.
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A.J. Dear, A. Šarić, T.C.T. Michaels, C.M. Dobson, T.P.J. Knowles, The Journal of Physical Chemistry B 122 (2018) 11721–11730.
2018 | Published | Journal Article | IST-REx-ID: 10358 |

Reaction rate theory for supramolecular kinetics: application to protein aggregation
T.C.T. Michaels, L.X. Liu, S. Curk, P.G. Bolhuis, A. Šarić, T.P.J. Knowles, Molecular Physics 116 (2018) 3055–3065.
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T.C.T. Michaels, L.X. Liu, S. Curk, P.G. Bolhuis, A. Šarić, T.P.J. Knowles, Molecular Physics 116 (2018) 3055–3065.
2018 | Published | Journal Article | IST-REx-ID: 10359 |

Controlling cargo trafficking in multicomponent membranes
T. Curk, P. Wirnsberger, J. Dobnikar, D. Frenkel, A. Šarić, Nano Letters 18 (2018) 5350–5356.
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T. Curk, P. Wirnsberger, J. Dobnikar, D. Frenkel, A. Šarić, Nano Letters 18 (2018) 5350–5356.
2018 | Published | Journal Article | IST-REx-ID: 10360
Distinct thermodynamic signatures of oligomer generation in the aggregation of the amyloid-β peptide
S.I.A. Cohen, R. Cukalevski, T.C.T. Michaels, A. Šarić, M. Törnquist, M. Vendruscolo, C.M. Dobson, A.K. Buell, T.P.J. Knowles, S. Linse, Nature Chemistry 10 (2018) 523–531.
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S.I.A. Cohen, R. Cukalevski, T.C.T. Michaels, A. Šarić, M. Törnquist, M. Vendruscolo, C.M. Dobson, A.K. Buell, T.P.J. Knowles, S. Linse, Nature Chemistry 10 (2018) 523–531.
2018 | Published | Journal Article | IST-REx-ID: 10361
Chemical kinetics for bridging molecular mechanisms and macroscopic measurements of amyloid fibril formation
T.C.T. Michaels, A. Šarić, J. Habchi, S. Chia, G. Meisl, M. Vendruscolo, C.M. Dobson, T.P.J. Knowles, Annual Review of Physical Chemistry 69 (2018) 273–298.
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T.C.T. Michaels, A. Šarić, J. Habchi, S. Chia, G. Meisl, M. Vendruscolo, C.M. Dobson, T.P.J. Knowles, Annual Review of Physical Chemistry 69 (2018) 273–298.
2018 | Published | Journal Article | IST-REx-ID: 10362
A Programmable DNA origami platform for organizing intrinsically disordered nucleoporins within nanopore confinement
P.D.E. Fisher, Q. Shen, B. Akpinar, L.K. Davis, K.K.H. Chung, D. Baddeley, A. Šarić, T.J. Melia, B.W. Hoogenboom, C. Lin, C.P. Lusk, ACS Nano 12 (2018) 1508–1518.
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P.D.E. Fisher, Q. Shen, B. Akpinar, L.K. Davis, K.K.H. Chung, D. Baddeley, A. Šarić, T.J. Melia, B.W. Hoogenboom, C. Lin, C.P. Lusk, ACS Nano 12 (2018) 1508–1518.
2017 | Published | Journal Article | IST-REx-ID: 10126 |

Curvature mediated interactions in highly curved membranes
A. Vahid Belarghou, A. Šarić, T. Idema, Biophysical Journal 112 (2017).
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A. Vahid Belarghou, A. Šarić, T. Idema, Biophysical Journal 112 (2017).
2017 | Published | Journal Article | IST-REx-ID: 10369 |

Long-range organization of membrane-curving proteins
M. Simunovic, A. Šarić, J.M. Henderson, K.Y.C. Lee, G.A. Voth, ACS Central Science 3 (2017) 1246–1253.
[Published Version]
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M. Simunovic, A. Šarić, J.M. Henderson, K.Y.C. Lee, G.A. Voth, ACS Central Science 3 (2017) 1246–1253.
2017 | Published | Journal Article | IST-REx-ID: 10370 |

Mechanical force induces mitochondrial fission
S.C.J. Helle, Q. Feng, M.J. Aebersold, L. Hirt, R.R. Grüter, A. Vahid, A. Sirianni, S. Mostowy, J.G. Snedeker, A. Šarić, T. Idema, T. Zambelli, B. Kornmann, ELife 6 (2017).
[Published Version]
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S.C.J. Helle, Q. Feng, M.J. Aebersold, L. Hirt, R.R. Grüter, A. Vahid, A. Sirianni, S. Mostowy, J.G. Snedeker, A. Šarić, T. Idema, T. Zambelli, B. Kornmann, ELife 6 (2017).
2017 | Published | Journal Article | IST-REx-ID: 10373 |

Numerical evidence for thermally induced monopoles
P. Wirnsberger, D. Fijan, R.A. Lightwood, A. Šarić, C. Dellago, D. Frenkel, Proceedings of the National Academy of Sciences 114 (2017) 4911–4914.
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P. Wirnsberger, D. Fijan, R.A. Lightwood, A. Šarić, C. Dellago, D. Frenkel, Proceedings of the National Academy of Sciences 114 (2017) 4911–4914.
2017 | Published | Journal Article | IST-REx-ID: 10374 |

Scaling behaviour and rate-determining steps in filamentous self-assembly
G. Meisl, L. Rajah, S.A.I. Cohen, M. Pfammatter, A. Šarić, E. Hellstrand, A.K. Buell, A. Aguzzi, S. Linse, M. Vendruscolo, C.M. Dobson, T.P.J. Knowles, Chemical Science 8 (2017) 7087–7097.
[Published Version]
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G. Meisl, L. Rajah, S.A.I. Cohen, M. Pfammatter, A. Šarić, E. Hellstrand, A.K. Buell, A. Aguzzi, S. Linse, M. Vendruscolo, C.M. Dobson, T.P.J. Knowles, Chemical Science 8 (2017) 7087–7097.
2017 | Published | Journal Article | IST-REx-ID: 10375 |

Curvature variation controls particle aggregation on fluid vesicles
A. Vahid, A. Šarić, T. Idema, Soft Matter 13 (2017) 4924–4930.
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A. Vahid, A. Šarić, T. Idema, Soft Matter 13 (2017) 4924–4930.
2016 | Published | Journal Article | IST-REx-ID: 10376 |

Kinetics of spontaneous filament nucleation via oligomers: Insights from theory and simulation
A. Šarić, T.C.T. Michaels, A. Zaccone, T.P.J. Knowles, D. Frenkel, The Journal of Chemical Physics 145 (2016).
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A. Šarić, T.C.T. Michaels, A. Zaccone, T.P.J. Knowles, D. Frenkel, The Journal of Chemical Physics 145 (2016).
2016 | Published | Journal Article | IST-REx-ID: 10377 |

Lipid membrane-mediated attraction between curvature inducing objects
C. van der Wel, A. Vahid, A. Šarić, T. Idema, D. Heinrich, D.J. Kraft, Scientific Reports 6 (2016).
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C. van der Wel, A. Vahid, A. Šarić, T. Idema, D. Heinrich, D.J. Kraft, Scientific Reports 6 (2016).
2016 | Published | Journal Article | IST-REx-ID: 10378 |

Physical determinants of the self-replication of protein fibrils
A. Šarić, A.K. Buell, G. Meisl, T.C.T. Michaels, C.M. Dobson, S. Linse, T.P.J. Knowles, D. Frenkel, Nature Physics 12 (2016) 874–880.
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A. Šarić, A.K. Buell, G. Meisl, T.C.T. Michaels, C.M. Dobson, S. Linse, T.P.J. Knowles, D. Frenkel, Nature Physics 12 (2016) 874–880.
2016 | Published | Journal Article | IST-REx-ID: 10380 |

Non-equilibrium simulations of thermally induced electric fields in water
P. Wirnsberger, D. Fijan, A. Šarić, M. Neumann, C. Dellago, D. Frenkel, The Journal of Chemical Physics 144 (2016).
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P. Wirnsberger, D. Fijan, A. Šarić, M. Neumann, C. Dellago, D. Frenkel, The Journal of Chemical Physics 144 (2016).
2016 | Published | Journal Article | IST-REx-ID: 10381 |

Melting transition in lipid vesicles functionalised by mobile DNA linkers
S.J. Bachmann, J. Kotar, L. Parolini, A. Šarić, P. Cicuta, L. Di Michele, B.M. Mognetti, Soft Matter 12 (2016) 7804–7817.
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S.J. Bachmann, J. Kotar, L. Parolini, A. Šarić, P. Cicuta, L. Di Michele, B.M. Mognetti, Soft Matter 12 (2016) 7804–7817.
2014 | Published | Journal Article | IST-REx-ID: 10382 |

Crucial role of nonspecific interactions in amyloid nucleation
A. Šarić, Y.C. Chebaro, T.P.J. Knowles, D. Frenkel, Proceedings of the National Academy of Sciences 111 (2014) 17869–17874.
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A. Šarić, Y.C. Chebaro, T.P.J. Knowles, D. Frenkel, Proceedings of the National Academy of Sciences 111 (2014) 17869–17874.
2014 | Published | Journal Article | IST-REx-ID: 10383 |

Anomalous thermomechanical properties of a self-propelled colloidal fluid
S.A. Mallory, A. Šarić, C. Valeriani, A. Cacciuto, Physical Review E 89 (2014).
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S.A. Mallory, A. Šarić, C. Valeriani, A. Cacciuto, Physical Review E 89 (2014).
2013 | Published | Journal Article | IST-REx-ID: 10384 |

Living clusters and crystals from low-density suspensions of active colloids
B.M. Mognetti, A. Šarić, S. Angioletti-Uberti, A. Cacciuto, C. Valeriani, D. Frenkel, Physical Review Letters 111 (2013).
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B.M. Mognetti, A. Šarić, S. Angioletti-Uberti, A. Cacciuto, C. Valeriani, D. Frenkel, Physical Review Letters 111 (2013).
2013 | Published | Journal Article | IST-REx-ID: 10385
Collapsing nanoparticle-laden nanotubes
J.A. Napoli, A. Šarić, A. Cacciuto, Soft Matter 9 (2013) 8881–8886.
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J.A. Napoli, A. Šarić, A. Cacciuto, Soft Matter 9 (2013) 8881–8886.
2013 | Published | Journal Article | IST-REx-ID: 10386
Self-assembly of nanoparticles adsorbed on fluid and elastic membranes
A. Šarić, A. Cacciuto, Soft Matter 9 (2013).
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A. Šarić, A. Cacciuto, Soft Matter 9 (2013).
2012 | Published | Journal Article | IST-REx-ID: 10387 |

Mechanism of membrane tube formation induced by adhesive nanocomponents
A. Šarić, A. Cacciuto, Physical Review Letters 109 (2012).
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A. Šarić, A. Cacciuto, Physical Review Letters 109 (2012).
2012 | Published | Journal Article | IST-REx-ID: 10388 |

Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles
A. Šarić, A. Cacciuto, Physical Review Letters 108 (2012).
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A. Šarić, A. Cacciuto, Physical Review Letters 108 (2012).
2011 | Published | Journal Article | IST-REx-ID: 10389 |

Soft elastic surfaces as a platform for particle self-assembly
A. Šarić, A. Cacciuto, Soft Matter 7 (2011).
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A. Šarić, A. Cacciuto, Soft Matter 7 (2011).
2010 | Published | Journal Article | IST-REx-ID: 10127 |

Particle self-assembly on soft elastic shells
A. Šarić, A. Cacciuto, Soft Matter 7 (2010) 1874–1878.
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A. Šarić, A. Cacciuto, Soft Matter 7 (2010) 1874–1878.
2010 | Published | Journal Article | IST-REx-ID: 10128
Quantum mechanical study of secondary structure formation in protected dipeptides
A. Šarić, T. Hrenar, M. Mališ, N. Došlić, Physical Chemistry Chemical Physics 12 (2010) 4678–4685.
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A. Šarić, T. Hrenar, M. Mališ, N. Došlić, Physical Chemistry Chemical Physics 12 (2010) 4678–4685.
2010 | Published | Journal Article | IST-REx-ID: 10390 |

Packing of soft asymmetric dumbbells
A. Šarić, B. Bozorgui, A. Cacciuto, The Journal of Physical Chemistry B 115 (2010) 7182–7189.
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A. Šarić, B. Bozorgui, A. Cacciuto, The Journal of Physical Chemistry B 115 (2010) 7182–7189.
2010 | Published | Journal Article | IST-REx-ID: 10391 |

Effective elasticity of a flexible filament bound to a deformable cylindrical surface
A. Šarić, J.C. Pàmies, A. Cacciuto, Physical Review Letters 104 (2010).
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A. Šarić, J.C. Pàmies, A. Cacciuto, Physical Review Letters 104 (2010).
2008 | Published | Journal Article | IST-REx-ID: 10392
Density functional study of protonated formylmetallocenes
A. Šarić, V. Vrček, M. Bühl, Organometallics 27 (2008) 394–401.
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A. Šarić, V. Vrček, M. Bühl, Organometallics 27 (2008) 394–401.