---
_id: '1808'
article_number: '7'
author:
- first_name: Ashutosh
  full_name: Gupta, Ashutosh
  id: 335E5684-F248-11E8-B48F-1D18A9856A87
  last_name: Gupta
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
citation:
  ama: Gupta A, Henzinger TA. Guest editors’ introduction to special issue on computational
    methods in systems biology. <i>ACM Transactions on Modeling and Computer Simulation</i>.
    2015;25(2). doi:<a href="https://doi.org/10.1145/2745799">10.1145/2745799</a>
  apa: Gupta, A., &#38; Henzinger, T. A. (2015). Guest editors’ introduction to special
    issue on computational methods in systems biology. <i>ACM Transactions on Modeling
    and Computer Simulation</i>. ACM. <a href="https://doi.org/10.1145/2745799">https://doi.org/10.1145/2745799</a>
  chicago: Gupta, Ashutosh, and Thomas A Henzinger. “Guest Editors’ Introduction to
    Special Issue on Computational Methods in Systems Biology.” <i>ACM Transactions
    on Modeling and Computer Simulation</i>. ACM, 2015. <a href="https://doi.org/10.1145/2745799">https://doi.org/10.1145/2745799</a>.
  ieee: A. Gupta and T. A. Henzinger, “Guest editors’ introduction to special issue
    on computational methods in systems biology,” <i>ACM Transactions on Modeling
    and Computer Simulation</i>, vol. 25, no. 2. ACM, 2015.
  ista: Gupta A, Henzinger TA. 2015. Guest editors’ introduction to special issue
    on computational methods in systems biology. ACM Transactions on Modeling and
    Computer Simulation. 25(2), 7.
  mla: Gupta, Ashutosh, and Thomas A. Henzinger. “Guest Editors’ Introduction to Special
    Issue on Computational Methods in Systems Biology.” <i>ACM Transactions on Modeling
    and Computer Simulation</i>, vol. 25, no. 2, 7, ACM, 2015, doi:<a href="https://doi.org/10.1145/2745799">10.1145/2745799</a>.
  short: A. Gupta, T.A. Henzinger, ACM Transactions on Modeling and Computer Simulation
    25 (2015).
date_created: 2018-12-11T11:54:07Z
date_published: 2015-05-01T00:00:00Z
date_updated: 2021-01-12T06:53:20Z
day: '01'
department:
- _id: ToHe
doi: 10.1145/2745799
intvolume: '        25'
issue: '2'
language:
- iso: eng
month: '05'
oa_version: None
publication: ACM Transactions on Modeling and Computer Simulation
publication_status: published
publisher: ACM
publist_id: '5302'
quality_controlled: '1'
status: public
title: Guest editors' introduction to special issue on computational methods in systems
  biology
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2015'
...
---
_id: '1832'
abstract:
- lang: eng
  text: 'Linearizability of concurrent data structures is usually proved by monolithic
    simulation arguments relying on the identification of the so-called linearization
    points. Regrettably, such proofs, whether manual or automatic, are often complicated
    and scale poorly to advanced non-blocking concurrency patterns, such as helping
    and optimistic updates. In response, we propose a more modular way of checking
    linearizability of concurrent queue algorithms that does not involve identifying
    linearization points. We reduce the task of proving linearizability with respect
    to the queue specification to establishing four basic properties, each of which
    can be proved independently by simpler arguments. As a demonstration of our approach,
    we verify the Herlihy and Wing queue, an algorithm that is challenging to verify
    by a simulation proof. '
article_number: '20'
article_processing_charge: No
article_type: original
author:
- first_name: Soham
  full_name: Chakraborty, Soham
  last_name: Chakraborty
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Ali
  full_name: Sezgin, Ali
  last_name: Sezgin
- first_name: Viktor
  full_name: Vafeiadis, Viktor
  last_name: Vafeiadis
citation:
  ama: Chakraborty S, Henzinger TA, Sezgin A, Vafeiadis V. Aspect-oriented linearizability
    proofs. <i>Logical Methods in Computer Science</i>. 2015;11(1). doi:<a href="https://doi.org/10.2168/LMCS-11(1:20)2015">10.2168/LMCS-11(1:20)2015</a>
  apa: Chakraborty, S., Henzinger, T. A., Sezgin, A., &#38; Vafeiadis, V. (2015).
    Aspect-oriented linearizability proofs. <i>Logical Methods in Computer Science</i>.
    International Federation of Computational Logic. <a href="https://doi.org/10.2168/LMCS-11(1:20)2015">https://doi.org/10.2168/LMCS-11(1:20)2015</a>
  chicago: Chakraborty, Soham, Thomas A Henzinger, Ali Sezgin, and Viktor Vafeiadis.
    “Aspect-Oriented Linearizability Proofs.” <i>Logical Methods in Computer Science</i>.
    International Federation of Computational Logic, 2015. <a href="https://doi.org/10.2168/LMCS-11(1:20)2015">https://doi.org/10.2168/LMCS-11(1:20)2015</a>.
  ieee: S. Chakraborty, T. A. Henzinger, A. Sezgin, and V. Vafeiadis, “Aspect-oriented
    linearizability proofs,” <i>Logical Methods in Computer Science</i>, vol. 11,
    no. 1. International Federation of Computational Logic, 2015.
  ista: Chakraborty S, Henzinger TA, Sezgin A, Vafeiadis V. 2015. Aspect-oriented
    linearizability proofs. Logical Methods in Computer Science. 11(1), 20.
  mla: Chakraborty, Soham, et al. “Aspect-Oriented Linearizability Proofs.” <i>Logical
    Methods in Computer Science</i>, vol. 11, no. 1, 20, International Federation
    of Computational Logic, 2015, doi:<a href="https://doi.org/10.2168/LMCS-11(1:20)2015">10.2168/LMCS-11(1:20)2015</a>.
  short: S. Chakraborty, T.A. Henzinger, A. Sezgin, V. Vafeiadis, Logical Methods
    in Computer Science 11 (2015).
date_created: 2018-12-11T11:54:15Z
date_published: 2015-04-01T00:00:00Z
date_updated: 2023-02-23T10:38:13Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.2168/LMCS-11(1:20)2015
ec_funded: 1
file:
- access_level: open_access
  checksum: 7370e164d0a731f442424a92669efc34
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:11:27Z
  date_updated: 2020-07-14T12:45:17Z
  file_id: '4881'
  file_name: IST-2015-390-v1+1_1502.07639.pdf
  file_size: 380203
  relation: main_file
file_date_updated: 2020-07-14T12:45:17Z
has_accepted_license: '1'
intvolume: '        11'
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nd/4.0/
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
publication: Logical Methods in Computer Science
publication_status: published
publisher: International Federation of Computational Logic
publist_id: '5271'
pubrep_id: '390'
quality_controlled: '1'
related_material:
  record:
  - id: '2328'
    relation: earlier_version
    status: public
scopus_import: 1
status: public
title: Aspect-oriented linearizability proofs
tmp:
  image: /image/cc_by_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nd/4.0/legalcode
  name: Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)
  short: CC BY-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2015'
...
---
_id: '1835'
abstract:
- lang: eng
  text: The behaviour of gene regulatory networks (GRNs) is typically analysed using
    simulation-based statistical testing-like methods. In this paper, we demonstrate
    that we can replace this approach by a formal verification-like method that gives
    higher assurance and scalability. We focus on Wagner’s weighted GRN model with
    varying weights, which is used in evolutionary biology. In the model, weight parameters
    represent the gene interaction strength that may change due to genetic mutations.
    For a property of interest, we synthesise the constraints over the parameter space
    that represent the set of GRNs satisfying the property. We experimentally show
    that our parameter synthesis procedure computes the mutational robustness of GRNs
    –an important problem of interest in evolutionary biology– more efficiently than
    the classical simulation method. We specify the property in linear temporal logics.
    We employ symbolic bounded model checking and SMT solving to compute the space
    of GRNs that satisfy the property, which amounts to synthesizing a set of linear
    constraints on the weights.
acknowledgement: "SNSF Early Postdoc.Mobility Fellowship, the grant number P2EZP2
  148797.\r\n"
alternative_title:
- LNCS
author:
- first_name: Mirco
  full_name: Giacobbe, Mirco
  id: 3444EA5E-F248-11E8-B48F-1D18A9856A87
  last_name: Giacobbe
  orcid: 0000-0001-8180-0904
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
- first_name: Ashutosh
  full_name: Gupta, Ashutosh
  id: 335E5684-F248-11E8-B48F-1D18A9856A87
  last_name: Gupta
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Tiago
  full_name: Paixao, Tiago
  id: 2C5658E6-F248-11E8-B48F-1D18A9856A87
  last_name: Paixao
  orcid: 0000-0003-2361-3953
- first_name: Tatjana
  full_name: Petrov, Tatjana
  id: 3D5811FC-F248-11E8-B48F-1D18A9856A87
  last_name: Petrov
  orcid: 0000-0002-9041-0905
citation:
  ama: Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. Model checking
    gene regulatory networks. 2015;9035:469-483. doi:<a href="https://doi.org/10.1007/978-3-662-46681-0_47">10.1007/978-3-662-46681-0_47</a>
  apa: 'Giacobbe, M., Guet, C. C., Gupta, A., Henzinger, T. A., Paixao, T., &#38;
    Petrov, T. (2015). Model checking gene regulatory networks. Presented at the TACAS:
    Tools and Algorithms for the Construction and Analysis of Systems, London, United
    Kingdom: Springer. <a href="https://doi.org/10.1007/978-3-662-46681-0_47">https://doi.org/10.1007/978-3-662-46681-0_47</a>'
  chicago: Giacobbe, Mirco, Calin C Guet, Ashutosh Gupta, Thomas A Henzinger, Tiago
    Paixao, and Tatjana Petrov. “Model Checking Gene Regulatory Networks.” Lecture
    Notes in Computer Science. Springer, 2015. <a href="https://doi.org/10.1007/978-3-662-46681-0_47">https://doi.org/10.1007/978-3-662-46681-0_47</a>.
  ieee: M. Giacobbe, C. C. Guet, A. Gupta, T. A. Henzinger, T. Paixao, and T. Petrov,
    “Model checking gene regulatory networks,” vol. 9035. Springer, pp. 469–483, 2015.
  ista: Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. 2015. Model
    checking gene regulatory networks. 9035, 469–483.
  mla: Giacobbe, Mirco, et al. <i>Model Checking Gene Regulatory Networks</i>. Vol.
    9035, Springer, 2015, pp. 469–83, doi:<a href="https://doi.org/10.1007/978-3-662-46681-0_47">10.1007/978-3-662-46681-0_47</a>.
  short: M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, 9035
    (2015) 469–483.
conference:
  end_date: 2015-04-18
  location: London, United Kingdom
  name: 'TACAS: Tools and Algorithms for the Construction and Analysis of Systems'
  start_date: 2015-04-11
date_created: 2018-12-11T11:54:16Z
date_published: 2015-04-01T00:00:00Z
date_updated: 2025-05-28T11:57:04Z
day: '01'
department:
- _id: ToHe
- _id: CaGu
- _id: NiBa
doi: 10.1007/978-3-662-46681-0_47
ec_funded: 1
intvolume: '      9035'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1410.7704
month: '04'
oa: 1
oa_version: Preprint
page: 469 - 483
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: The Wittgenstein Prize
- _id: 25B1EC9E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '618091'
  name: Speed of Adaptation in Population Genetics and Evolutionary Computation
- _id: 25B07788-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '250152'
  name: Limits to selection in biology and in evolutionary computation
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication_status: published
publisher: Springer
publist_id: '5267'
quality_controlled: '1'
related_material:
  record:
  - id: '1351'
    relation: later_version
    status: public
scopus_import: 1
series_title: Lecture Notes in Computer Science
status: public
title: Model checking gene regulatory networks
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9035
year: '2015'
...
---
_id: '1836'
abstract:
- lang: eng
  text: In the standard framework for worst-case execution time (WCET) analysis of
    programs, the main data structure is a single instance of integer linear programming
    (ILP) that represents the whole program. The instance of this NP-hard problem
    must be solved to find an estimate forWCET, and it must be refined if the estimate
    is not tight.We propose a new framework for WCET analysis, based on abstract segment
    trees (ASTs) as the main data structure. The ASTs have two advantages. First,
    they allow computing WCET by solving a number of independent small ILP instances.
    Second, ASTs store more expressive constraints, thus enabling a more efficient
    and precise refinement procedure. In order to realize our framework algorithmically,
    we develop an algorithm for WCET estimation on ASTs, and we develop an interpolation-based
    counterexample-guided refinement scheme for ASTs. Furthermore, we extend our framework
    to obtain parametric estimates of WCET. We experimentally evaluate our approach
    on a set of examples from WCET benchmark suites and linear-algebra packages. We
    show that our analysis, with comparable effort, provides WCET estimates that in
    many cases significantly improve those computed by existing tools.
alternative_title:
- LNCS
author:
- first_name: Pavol
  full_name: Cerny, Pavol
  id: 4DCBEFFE-F248-11E8-B48F-1D18A9856A87
  last_name: Cerny
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Laura
  full_name: Kovács, Laura
  last_name: Kovács
- first_name: Arjun
  full_name: Radhakrishna, Arjun
  id: 3B51CAC4-F248-11E8-B48F-1D18A9856A87
  last_name: Radhakrishna
- first_name: Jakob
  full_name: Zwirchmayr, Jakob
  last_name: Zwirchmayr
citation:
  ama: Cerny P, Henzinger TA, Kovács L, Radhakrishna A, Zwirchmayr J. Segment abstraction
    for worst-case execution time analysis. 2015;9032:105-131. doi:<a href="https://doi.org/10.1007/978-3-662-46669-8_5">10.1007/978-3-662-46669-8_5</a>
  apa: 'Cerny, P., Henzinger, T. A., Kovács, L., Radhakrishna, A., &#38; Zwirchmayr,
    J. (2015). Segment abstraction for worst-case execution time analysis. Presented
    at the ESOP: European Symposium on Programming, London, United Kingdom: Springer.
    <a href="https://doi.org/10.1007/978-3-662-46669-8_5">https://doi.org/10.1007/978-3-662-46669-8_5</a>'
  chicago: Cerny, Pavol, Thomas A Henzinger, Laura Kovács, Arjun Radhakrishna, and
    Jakob Zwirchmayr. “Segment Abstraction for Worst-Case Execution Time Analysis.”
    Lecture Notes in Computer Science. Springer, 2015. <a href="https://doi.org/10.1007/978-3-662-46669-8_5">https://doi.org/10.1007/978-3-662-46669-8_5</a>.
  ieee: P. Cerny, T. A. Henzinger, L. Kovács, A. Radhakrishna, and J. Zwirchmayr,
    “Segment abstraction for worst-case execution time analysis,” vol. 9032. Springer,
    pp. 105–131, 2015.
  ista: Cerny P, Henzinger TA, Kovács L, Radhakrishna A, Zwirchmayr J. 2015. Segment
    abstraction for worst-case execution time analysis. 9032, 105–131.
  mla: Cerny, Pavol, et al. <i>Segment Abstraction for Worst-Case Execution Time Analysis</i>.
    Vol. 9032, Springer, 2015, pp. 105–31, doi:<a href="https://doi.org/10.1007/978-3-662-46669-8_5">10.1007/978-3-662-46669-8_5</a>.
  short: P. Cerny, T.A. Henzinger, L. Kovács, A. Radhakrishna, J. Zwirchmayr, 9032
    (2015) 105–131.
conference:
  end_date: 2015-04-18
  location: London, United Kingdom
  name: 'ESOP: European Symposium on Programming'
  start_date: 2015-04-11
date_created: 2018-12-11T11:54:16Z
date_published: 2015-04-01T00:00:00Z
date_updated: 2020-08-11T10:09:32Z
day: '01'
department:
- _id: ToHe
doi: 10.1007/978-3-662-46669-8_5
ec_funded: 1
intvolume: '      9032'
language:
- iso: eng
month: '04'
oa_version: None
page: 105 - 131
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication_status: published
publisher: Springer
publist_id: '5266'
quality_controlled: '1'
scopus_import: 1
series_title: Lecture Notes in Computer Science
status: public
title: Segment abstraction for worst-case execution time analysis
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9032
year: '2015'
...
---
_id: '1840'
abstract:
- lang: eng
  text: In this paper, we present a method for reducing a regular, discrete-time Markov
    chain (DTMC) to another DTMC with a given, typically much smaller number of states.
    The cost of reduction is defined as the Kullback-Leibler divergence rate between
    a projection of the original process through a partition function and a DTMC on
    the correspondingly partitioned state space. Finding the reduced model with minimal
    cost is computationally expensive, as it requires an exhaustive search among all
    state space partitions, and an exact evaluation of the reduction cost for each
    candidate partition. Our approach deals with the latter problem by minimizing
    an upper bound on the reduction cost instead of minimizing the exact cost. The
    proposed upper bound is easy to compute and it is tight if the original chain
    is lumpable with respect to the partition. Then, we express the problem in the
    form of information bottleneck optimization, and propose using the agglomerative
    information bottleneck algorithm for searching a suboptimal partition greedily,
    rather than exhaustively. The theory is illustrated with examples and one application
    scenario in the context of modeling bio-molecular interactions.
acknowledgement: "This work was supported by the Austrian Research Association under
  Project 06/12684, by the Swiss National Science Foundation (SNSF) under Grant PP00P2
  128503/1, by the SystemsX.ch (the Swiss Inititative for Systems Biology), and by
  a SNSF Early Postdoc.Mobility Fellowship grant P2EZP2_148797.\r\n"
author:
- first_name: Bernhard
  full_name: Geiger, Bernhard
  last_name: Geiger
- first_name: Tatjana
  full_name: Petrov, Tatjana
  id: 3D5811FC-F248-11E8-B48F-1D18A9856A87
  last_name: Petrov
  orcid: 0000-0002-9041-0905
- first_name: Gernot
  full_name: Kubin, Gernot
  last_name: Kubin
- first_name: Heinz
  full_name: Koeppl, Heinz
  last_name: Koeppl
citation:
  ama: Geiger B, Petrov T, Kubin G, Koeppl H. Optimal Kullback-Leibler aggregation
    via information bottleneck. <i>IEEE Transactions on Automatic Control</i>. 2015;60(4):1010-1022.
    doi:<a href="https://doi.org/10.1109/TAC.2014.2364971">10.1109/TAC.2014.2364971</a>
  apa: Geiger, B., Petrov, T., Kubin, G., &#38; Koeppl, H. (2015). Optimal Kullback-Leibler
    aggregation via information bottleneck. <i>IEEE Transactions on Automatic Control</i>.
    IEEE. <a href="https://doi.org/10.1109/TAC.2014.2364971">https://doi.org/10.1109/TAC.2014.2364971</a>
  chicago: Geiger, Bernhard, Tatjana Petrov, Gernot Kubin, and Heinz Koeppl. “Optimal
    Kullback-Leibler Aggregation via Information Bottleneck.” <i>IEEE Transactions
    on Automatic Control</i>. IEEE, 2015. <a href="https://doi.org/10.1109/TAC.2014.2364971">https://doi.org/10.1109/TAC.2014.2364971</a>.
  ieee: B. Geiger, T. Petrov, G. Kubin, and H. Koeppl, “Optimal Kullback-Leibler aggregation
    via information bottleneck,” <i>IEEE Transactions on Automatic Control</i>, vol.
    60, no. 4. IEEE, pp. 1010–1022, 2015.
  ista: Geiger B, Petrov T, Kubin G, Koeppl H. 2015. Optimal Kullback-Leibler aggregation
    via information bottleneck. IEEE Transactions on Automatic Control. 60(4), 1010–1022.
  mla: Geiger, Bernhard, et al. “Optimal Kullback-Leibler Aggregation via Information
    Bottleneck.” <i>IEEE Transactions on Automatic Control</i>, vol. 60, no. 4, IEEE,
    2015, pp. 1010–22, doi:<a href="https://doi.org/10.1109/TAC.2014.2364971">10.1109/TAC.2014.2364971</a>.
  short: B. Geiger, T. Petrov, G. Kubin, H. Koeppl, IEEE Transactions on Automatic
    Control 60 (2015) 1010–1022.
date_created: 2018-12-11T11:54:18Z
date_published: 2015-04-01T00:00:00Z
date_updated: 2021-01-12T06:53:33Z
day: '01'
department:
- _id: CaGu
- _id: ToHe
doi: 10.1109/TAC.2014.2364971
intvolume: '        60'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1304.6603
month: '04'
oa: 1
oa_version: Preprint
page: 1010 - 1022
publication: IEEE Transactions on Automatic Control
publication_identifier:
  issn:
  - 0018-9286
publication_status: published
publisher: IEEE
publist_id: '5262'
quality_controlled: '1'
scopus_import: 1
status: public
title: Optimal Kullback-Leibler aggregation via information bottleneck
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 60
year: '2015'
...
---
_id: '1846'
abstract:
- lang: eng
  text: Modal transition systems (MTS) is a well-studied specification formalism of
    reactive systems supporting a step-wise refinement methodology. Despite its many
    advantages, the formalism as well as its currently known extensions are incapable
    of expressing some practically needed aspects in the refinement process like exclusive,
    conditional and persistent choices. We introduce a new model called parametric
    modal transition systems (PMTS) together with a general modal refinement notion
    that overcomes many of the limitations. We investigate the computational complexity
    of modal and thorough refinement checking on PMTS and its subclasses and provide
    a direct encoding of the modal refinement problem into quantified Boolean formulae,
    allowing us to employ state-of-the-art QBF solvers for modal refinement checking.
    The experiments we report on show that the feasibility of refinement checking
    is more influenced by the degree of nondeterminism rather than by the syntactic
    restrictions on the types of formulae allowed in the description of the PMTS.
article_processing_charge: No
article_type: original
author:
- first_name: Nikola
  full_name: Beneš, Nikola
  last_name: Beneš
- first_name: Jan
  full_name: Kretinsky, Jan
  id: 44CEF464-F248-11E8-B48F-1D18A9856A87
  last_name: Kretinsky
  orcid: 0000-0002-8122-2881
- first_name: Kim
  full_name: Larsen, Kim
  last_name: Larsen
- first_name: Mikael
  full_name: Möller, Mikael
  last_name: Möller
- first_name: Salomon
  full_name: Sickert, Salomon
  last_name: Sickert
- first_name: Jiří
  full_name: Srba, Jiří
  last_name: Srba
citation:
  ama: Beneš N, Kretinsky J, Larsen K, Möller M, Sickert S, Srba J. Refinement checking
    on parametric modal transition systems. <i>Acta Informatica</i>. 2015;52(2-3):269-297.
    doi:<a href="https://doi.org/10.1007/s00236-015-0215-4">10.1007/s00236-015-0215-4</a>
  apa: Beneš, N., Kretinsky, J., Larsen, K., Möller, M., Sickert, S., &#38; Srba,
    J. (2015). Refinement checking on parametric modal transition systems. <i>Acta
    Informatica</i>. Springer. <a href="https://doi.org/10.1007/s00236-015-0215-4">https://doi.org/10.1007/s00236-015-0215-4</a>
  chicago: Beneš, Nikola, Jan Kretinsky, Kim Larsen, Mikael Möller, Salomon Sickert,
    and Jiří Srba. “Refinement Checking on Parametric Modal Transition Systems.” <i>Acta
    Informatica</i>. Springer, 2015. <a href="https://doi.org/10.1007/s00236-015-0215-4">https://doi.org/10.1007/s00236-015-0215-4</a>.
  ieee: N. Beneš, J. Kretinsky, K. Larsen, M. Möller, S. Sickert, and J. Srba, “Refinement
    checking on parametric modal transition systems,” <i>Acta Informatica</i>, vol.
    52, no. 2–3. Springer, pp. 269–297, 2015.
  ista: Beneš N, Kretinsky J, Larsen K, Möller M, Sickert S, Srba J. 2015. Refinement
    checking on parametric modal transition systems. Acta Informatica. 52(2–3), 269–297.
  mla: Beneš, Nikola, et al. “Refinement Checking on Parametric Modal Transition Systems.”
    <i>Acta Informatica</i>, vol. 52, no. 2–3, Springer, 2015, pp. 269–97, doi:<a
    href="https://doi.org/10.1007/s00236-015-0215-4">10.1007/s00236-015-0215-4</a>.
  short: N. Beneš, J. Kretinsky, K. Larsen, M. Möller, S. Sickert, J. Srba, Acta Informatica
    52 (2015) 269–297.
date_created: 2018-12-11T11:54:20Z
date_published: 2015-04-01T00:00:00Z
date_updated: 2021-01-12T06:53:35Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
- _id: KrCh
doi: 10.1007/s00236-015-0215-4
ec_funded: 1
file:
- access_level: open_access
  checksum: fb4037ddc4fc05f33080dd3547ede350
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-15T08:57:44Z
  date_updated: 2020-07-14T12:45:19Z
  file_id: '7854'
  file_name: 2015_ActaInfo_Benes.pdf
  file_size: 488482
  relation: main_file
file_date_updated: 2020-07-14T12:45:19Z
has_accepted_license: '1'
intvolume: '        52'
issue: 2-3
language:
- iso: eng
month: '04'
oa: 1
oa_version: Submitted Version
page: 269 - 297
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication: Acta Informatica
publication_status: published
publisher: Springer
publist_id: '5255'
quality_controlled: '1'
scopus_import: 1
status: public
title: Refinement checking on parametric modal transition systems
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 52
year: '2015'
...
---
_id: '1856'
abstract:
- lang: eng
  text: 'The traditional synthesis question given a specification asks for the automatic
    construction of a system that satisfies the specification, whereas often there
    exists a preference order among the different systems that satisfy the given specification.
    Under a probabilistic assumption about the possible inputs, such a preference
    order is naturally expressed by a weighted automaton, which assigns to each word
    a value, such that a system is preferred if it generates a higher expected value.
    We solve the following optimal synthesis problem: given an omega-regular specification,
    a Markov chain that describes the distribution of inputs, and a weighted automaton
    that measures how well a system satisfies the given specification under the input
    assumption, synthesize a system that optimizes the measured value. For safety
    specifications and quantitative measures that are defined by mean-payoff automata,
    the optimal synthesis problem reduces to finding a strategy in a Markov decision
    process (MDP) that is optimal for a long-run average reward objective, which can
    be achieved in polynomial time. For general omega-regular specifications along
    with mean-payoff automata, the solution rests on a new, polynomial-time algorithm
    for computing optimal strategies in MDPs with mean-payoff parity objectives. Our
    algorithm constructs optimal strategies that consist of two memoryless strategies
    and a counter. The counter is in general not bounded. To obtain a finite-state
    system, we show how to construct an ε-optimal strategy with a bounded counter,
    for all ε &gt; 0. Furthermore, we show how to decide in polynomial time if it
    is possible to construct an optimal finite-state system (i.e., a system without
    a counter) for a given specification. We have implemented our approach and the
    underlying algorithms in a tool that takes qualitative and quantitative specifications
    and automatically constructs a system that satisfies the qualitative specification
    and optimizes the quantitative specification, if such a system exists. We present
    some experimental results showing optimal systems that were automatically generated
    in this way.'
article_number: '9'
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Barbara
  full_name: Jobstmann, Barbara
  last_name: Jobstmann
- first_name: Rohit
  full_name: Singh, Rohit
  last_name: Singh
citation:
  ama: Chatterjee K, Henzinger TA, Jobstmann B, Singh R. Measuring and synthesizing
    systems in probabilistic environments. <i>Journal of the ACM</i>. 2015;62(1).
    doi:<a href="https://doi.org/10.1145/2699430">10.1145/2699430</a>
  apa: Chatterjee, K., Henzinger, T. A., Jobstmann, B., &#38; Singh, R. (2015). Measuring
    and synthesizing systems in probabilistic environments. <i>Journal of the ACM</i>.
    ACM. <a href="https://doi.org/10.1145/2699430">https://doi.org/10.1145/2699430</a>
  chicago: Chatterjee, Krishnendu, Thomas A Henzinger, Barbara Jobstmann, and Rohit
    Singh. “Measuring and Synthesizing Systems in Probabilistic Environments.” <i>Journal
    of the ACM</i>. ACM, 2015. <a href="https://doi.org/10.1145/2699430">https://doi.org/10.1145/2699430</a>.
  ieee: K. Chatterjee, T. A. Henzinger, B. Jobstmann, and R. Singh, “Measuring and
    synthesizing systems in probabilistic environments,” <i>Journal of the ACM</i>,
    vol. 62, no. 1. ACM, 2015.
  ista: Chatterjee K, Henzinger TA, Jobstmann B, Singh R. 2015. Measuring and synthesizing
    systems in probabilistic environments. Journal of the ACM. 62(1), 9.
  mla: Chatterjee, Krishnendu, et al. “Measuring and Synthesizing Systems in Probabilistic
    Environments.” <i>Journal of the ACM</i>, vol. 62, no. 1, 9, ACM, 2015, doi:<a
    href="https://doi.org/10.1145/2699430">10.1145/2699430</a>.
  short: K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, Journal of the ACM
    62 (2015).
date_created: 2018-12-11T11:54:23Z
date_published: 2015-02-01T00:00:00Z
date_updated: 2023-02-23T11:46:04Z
day: '01'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1145/2699430
ec_funded: 1
intvolume: '        62'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1004.0739
month: '02'
oa: 1
oa_version: Preprint
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: Journal of the ACM
publication_status: published
publisher: ACM
publist_id: '5244'
quality_controlled: '1'
related_material:
  record:
  - id: '3864'
    relation: earlier_version
    status: public
scopus_import: 1
status: public
title: Measuring and synthesizing systems in probabilistic environments
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 62
year: '2015'
...
---
_id: '1861'
abstract:
- lang: eng
  text: Continuous-time Markov chains are commonly used in practice for modeling biochemical
    reaction networks in which the inherent randomness of themolecular interactions
    cannot be ignored. This has motivated recent research effort into methods for
    parameter inference and experiment design for such models. The major difficulty
    is that such methods usually require one to iteratively solve the chemical master
    equation that governs the time evolution of the probability distribution of the
    system. This, however, is rarely possible, and even approximation techniques remain
    limited to relatively small and simple systems. An alternative explored in this
    article is to base methods on only some low-order moments of the entire probability
    distribution. We summarize the theory behind such moment-based methods for parameter
    inference and experiment design and provide new case studies where we investigate
    their performance.
acknowledgement: "HYCON2; EC; European Commission\r\n"
article_number: '8'
author:
- first_name: Jakob
  full_name: Ruess, Jakob
  id: 4A245D00-F248-11E8-B48F-1D18A9856A87
  last_name: Ruess
  orcid: 0000-0003-1615-3282
- first_name: John
  full_name: Lygeros, John
  last_name: Lygeros
citation:
  ama: Ruess J, Lygeros J. Moment-based methods for parameter inference and experiment
    design for stochastic biochemical reaction networks. <i>ACM Transactions on Modeling
    and Computer Simulation</i>. 2015;25(2). doi:<a href="https://doi.org/10.1145/2688906">10.1145/2688906</a>
  apa: Ruess, J., &#38; Lygeros, J. (2015). Moment-based methods for parameter inference
    and experiment design for stochastic biochemical reaction networks. <i>ACM Transactions
    on Modeling and Computer Simulation</i>. ACM. <a href="https://doi.org/10.1145/2688906">https://doi.org/10.1145/2688906</a>
  chicago: Ruess, Jakob, and John Lygeros. “Moment-Based Methods for Parameter Inference
    and Experiment Design for Stochastic Biochemical Reaction Networks.” <i>ACM Transactions
    on Modeling and Computer Simulation</i>. ACM, 2015. <a href="https://doi.org/10.1145/2688906">https://doi.org/10.1145/2688906</a>.
  ieee: J. Ruess and J. Lygeros, “Moment-based methods for parameter inference and
    experiment design for stochastic biochemical reaction networks,” <i>ACM Transactions
    on Modeling and Computer Simulation</i>, vol. 25, no. 2. ACM, 2015.
  ista: Ruess J, Lygeros J. 2015. Moment-based methods for parameter inference and
    experiment design for stochastic biochemical reaction networks. ACM Transactions
    on Modeling and Computer Simulation. 25(2), 8.
  mla: Ruess, Jakob, and John Lygeros. “Moment-Based Methods for Parameter Inference
    and Experiment Design for Stochastic Biochemical Reaction Networks.” <i>ACM Transactions
    on Modeling and Computer Simulation</i>, vol. 25, no. 2, 8, ACM, 2015, doi:<a
    href="https://doi.org/10.1145/2688906">10.1145/2688906</a>.
  short: J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation
    25 (2015).
date_created: 2018-12-11T11:54:25Z
date_published: 2015-02-01T00:00:00Z
date_updated: 2021-01-12T06:53:41Z
day: '01'
department:
- _id: ToHe
- _id: GaTk
doi: 10.1145/2688906
intvolume: '        25'
issue: '2'
language:
- iso: eng
month: '02'
oa_version: None
publication: ACM Transactions on Modeling and Computer Simulation
publication_status: published
publisher: ACM
publist_id: '5238'
quality_controlled: '1'
scopus_import: 1
status: public
title: Moment-based methods for parameter inference and experiment design for stochastic
  biochemical reaction networks
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2015'
...
---
_id: '1866'
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Jean
  full_name: Raskin, Jean
  last_name: Raskin
citation:
  ama: 'Henzinger TA, Raskin J. The equivalence problem for finite automata: Technical
    perspective. <i>Communications of the ACM</i>. 2015;58(2):86-86. doi:<a href="https://doi.org/10.1145/2701001">10.1145/2701001</a>'
  apa: 'Henzinger, T. A., &#38; Raskin, J. (2015). The equivalence problem for finite
    automata: Technical perspective. <i>Communications of the ACM</i>. ACM. <a href="https://doi.org/10.1145/2701001">https://doi.org/10.1145/2701001</a>'
  chicago: 'Henzinger, Thomas A, and Jean Raskin. “The Equivalence Problem for Finite
    Automata: Technical Perspective.” <i>Communications of the ACM</i>. ACM, 2015.
    <a href="https://doi.org/10.1145/2701001">https://doi.org/10.1145/2701001</a>.'
  ieee: 'T. A. Henzinger and J. Raskin, “The equivalence problem for finite automata:
    Technical perspective,” <i>Communications of the ACM</i>, vol. 58, no. 2. ACM,
    pp. 86–86, 2015.'
  ista: 'Henzinger TA, Raskin J. 2015. The equivalence problem for finite automata:
    Technical perspective. Communications of the ACM. 58(2), 86–86.'
  mla: 'Henzinger, Thomas A., and Jean Raskin. “The Equivalence Problem for Finite
    Automata: Technical Perspective.” <i>Communications of the ACM</i>, vol. 58, no.
    2, ACM, 2015, pp. 86–86, doi:<a href="https://doi.org/10.1145/2701001">10.1145/2701001</a>.'
  short: T.A. Henzinger, J. Raskin, Communications of the ACM 58 (2015) 86–86.
date_created: 2018-12-11T11:54:26Z
date_published: 2015-01-28T00:00:00Z
date_updated: 2021-01-12T06:53:43Z
day: '28'
department:
- _id: ToHe
doi: 10.1145/2701001
intvolume: '        58'
issue: '2'
language:
- iso: eng
month: '01'
oa_version: None
page: 86-86
publication: Communications of the ACM
publication_status: published
publisher: ACM
publist_id: '5232'
scopus_import: 1
status: public
title: 'The equivalence problem for finite automata: Technical perspective'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 58
year: '2015'
...
---
_id: '1882'
abstract:
- lang: eng
  text: We provide a framework for compositional and iterative design and verification
    of systems with quantitative information, such as rewards, time or energy. It
    is based on disjunctive modal transition systems where we allow actions to bear
    various types of quantitative information. Throughout the design process the actions
    can be further refined and the information made more precise. We show how to compute
    the results of standard operations on the systems, including the quotient (residual),
    which has not been previously considered for quantitative non-deterministic systems.
    Our quantitative framework has close connections to the modal nu-calculus and
    is compositional with respect to general notions of distances between systems
    and the standard operations.
acknowledgement: This research was funded in part by the European Research Council
  (ERC) under grant agreement 267989 (QUAREM), by the Austrian Science Fund (FWF)
  project S11402-N23 (RiSE), and by the Czech Science Foundation, grant No. P202/12/G061.
alternative_title:
- LNCS
author:
- first_name: Uli
  full_name: Fahrenberg, Uli
  last_name: Fahrenberg
- first_name: Jan
  full_name: Kretinsky, Jan
  id: 44CEF464-F248-11E8-B48F-1D18A9856A87
  last_name: Kretinsky
  orcid: 0000-0002-8122-2881
- first_name: Axel
  full_name: Legay, Axel
  last_name: Legay
- first_name: Louis
  full_name: Traonouez, Louis
  last_name: Traonouez
citation:
  ama: 'Fahrenberg U, Kretinsky J, Legay A, Traonouez L. Compositionality for quantitative
    specifications. In: Vol 8997. Springer; 2015:306-324. doi:<a href="https://doi.org/10.1007/978-3-319-15317-9_19">10.1007/978-3-319-15317-9_19</a>'
  apa: 'Fahrenberg, U., Kretinsky, J., Legay, A., &#38; Traonouez, L. (2015). Compositionality
    for quantitative specifications (Vol. 8997, pp. 306–324). Presented at the FACS:
    Formal Aspects of Component Software, Bertinoro, Italy: Springer. <a href="https://doi.org/10.1007/978-3-319-15317-9_19">https://doi.org/10.1007/978-3-319-15317-9_19</a>'
  chicago: Fahrenberg, Uli, Jan Kretinsky, Axel Legay, and Louis Traonouez. “Compositionality
    for Quantitative Specifications,” 8997:306–24. Springer, 2015. <a href="https://doi.org/10.1007/978-3-319-15317-9_19">https://doi.org/10.1007/978-3-319-15317-9_19</a>.
  ieee: 'U. Fahrenberg, J. Kretinsky, A. Legay, and L. Traonouez, “Compositionality
    for quantitative specifications,” presented at the FACS: Formal Aspects of Component
    Software, Bertinoro, Italy, 2015, vol. 8997, pp. 306–324.'
  ista: 'Fahrenberg U, Kretinsky J, Legay A, Traonouez L. 2015. Compositionality for
    quantitative specifications. FACS: Formal Aspects of Component Software, LNCS,
    vol. 8997, 306–324.'
  mla: Fahrenberg, Uli, et al. <i>Compositionality for Quantitative Specifications</i>.
    Vol. 8997, Springer, 2015, pp. 306–24, doi:<a href="https://doi.org/10.1007/978-3-319-15317-9_19">10.1007/978-3-319-15317-9_19</a>.
  short: U. Fahrenberg, J. Kretinsky, A. Legay, L. Traonouez, in:, Springer, 2015,
    pp. 306–324.
conference:
  end_date: 2014-09-12
  location: Bertinoro, Italy
  name: 'FACS: Formal Aspects of Component Software'
  start_date: 2014-09-10
date_created: 2018-12-11T11:54:31Z
date_published: 2015-01-30T00:00:00Z
date_updated: 2021-01-12T06:53:49Z
day: '30'
department:
- _id: ToHe
- _id: KrCh
doi: 10.1007/978-3-319-15317-9_19
ec_funded: 1
intvolume: '      8997'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1408.1256
month: '01'
oa: 1
oa_version: Preprint
page: 306 - 324
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication_status: published
publisher: Springer
publist_id: '5216'
quality_controlled: '1'
scopus_import: 1
status: public
title: Compositionality for quantitative specifications
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8997
year: '2015'
...
---
_id: '1992'
abstract:
- lang: eng
  text: "We present a method and a tool for generating succinct representations of
    sets of concurrent traces. We focus on trace sets that contain all correct or
    all incorrect permutations of events from a given trace. We represent trace sets
    as HB-Formulas that are Boolean combinations of happens-before constraints between
    events. To generate a representation of incorrect interleavings, our method iteratively
    explores interleavings that violate the specification and gathers generalizations
    of the discovered interleavings into an HB-Formula; its complement yields a representation
    of correct interleavings.\r\n\r\nWe claim that our trace set representations can
    drive diverse verification, fault localization, repair, and synthesis techniques
    for concurrent programs. We demonstrate this by using our tool in three case studies
    involving synchronization synthesis, bug summarization, and abstraction refinement
    based verification. In each case study, our initial experimental results have
    been promising.\r\n\r\nIn the first case study, we present an algorithm for inferring
    missing synchronization from an HB-Formula representing correct interleavings
    of a given trace. The algorithm applies rules to rewrite specific patterns in
    the HB-Formula into locks, barriers, and wait-notify constructs. In the second
    case study, we use an HB-Formula representing incorrect interleavings for bug
    summarization. While the HB-Formula itself is a concise counterexample summary,
    we present additional inference rules to help identify specific concurrency bugs
    such as data races, define-use order violations, and two-stage access bugs. In
    the final case study, we present a novel predicate learning procedure that uses
    HB-Formulas representing abstract counterexamples to accelerate counterexample-guided
    abstraction refinement (CEGAR). In each iteration of the CEGAR loop, the procedure
    refines the abstraction to eliminate multiple spurious abstract counterexamples
    drawn from the HB-Formula."
author:
- first_name: Ashutosh
  full_name: Gupta, Ashutosh
  id: 335E5684-F248-11E8-B48F-1D18A9856A87
  last_name: Gupta
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Arjun
  full_name: Radhakrishna, Arjun
  id: 3B51CAC4-F248-11E8-B48F-1D18A9856A87
  last_name: Radhakrishna
- first_name: Roopsha
  full_name: Samanta, Roopsha
  id: 3D2AAC08-F248-11E8-B48F-1D18A9856A87
  last_name: Samanta
- first_name: Thorsten
  full_name: Tarrach, Thorsten
  id: 3D6E8F2C-F248-11E8-B48F-1D18A9856A87
  last_name: Tarrach
  orcid: 0000-0003-4409-8487
citation:
  ama: 'Gupta A, Henzinger TA, Radhakrishna A, Samanta R, Tarrach T. Succinct representation
    of concurrent trace sets. In: ACM; 2015:433-444. doi:<a href="https://doi.org/10.1145/2676726.2677008">10.1145/2676726.2677008</a>'
  apa: 'Gupta, A., Henzinger, T. A., Radhakrishna, A., Samanta, R., &#38; Tarrach,
    T. (2015). Succinct representation of concurrent trace sets (pp. 433–444). Presented
    at the POPL: Principles of Programming Languages, Mumbai, India: ACM. <a href="https://doi.org/10.1145/2676726.2677008">https://doi.org/10.1145/2676726.2677008</a>'
  chicago: Gupta, Ashutosh, Thomas A Henzinger, Arjun Radhakrishna, Roopsha Samanta,
    and Thorsten Tarrach. “Succinct Representation of Concurrent Trace Sets,” 433–44.
    ACM, 2015. <a href="https://doi.org/10.1145/2676726.2677008">https://doi.org/10.1145/2676726.2677008</a>.
  ieee: 'A. Gupta, T. A. Henzinger, A. Radhakrishna, R. Samanta, and T. Tarrach, “Succinct
    representation of concurrent trace sets,” presented at the POPL: Principles of
    Programming Languages, Mumbai, India, 2015, pp. 433–444.'
  ista: 'Gupta A, Henzinger TA, Radhakrishna A, Samanta R, Tarrach T. 2015. Succinct
    representation of concurrent trace sets. POPL: Principles of Programming Languages,
    433–444.'
  mla: Gupta, Ashutosh, et al. <i>Succinct Representation of Concurrent Trace Sets</i>.
    ACM, 2015, pp. 433–44, doi:<a href="https://doi.org/10.1145/2676726.2677008">10.1145/2676726.2677008</a>.
  short: A. Gupta, T.A. Henzinger, A. Radhakrishna, R. Samanta, T. Tarrach, in:, ACM,
    2015, pp. 433–444.
conference:
  end_date: 2015-01-17
  location: Mumbai, India
  name: 'POPL: Principles of Programming Languages'
  start_date: 2015-01-15
date_created: 2018-12-11T11:55:05Z
date_published: 2015-01-15T00:00:00Z
date_updated: 2021-01-12T06:54:33Z
day: '15'
ddc:
- '005'
department:
- _id: ToHe
doi: 10.1145/2676726.2677008
file:
- access_level: open_access
  checksum: f0d4395b600f410a191256ac0b73af32
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:17:56Z
  date_updated: 2020-07-14T12:45:22Z
  file_id: '5314'
  file_name: IST-2015-317-v1+1_author_version.pdf
  file_size: 399462
  relation: main_file
file_date_updated: 2020-07-14T12:45:22Z
has_accepted_license: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 433 - 444
publication_identifier:
  isbn:
  - 978-1-4503-3300-9
publication_status: published
publisher: ACM
publist_id: '5091'
pubrep_id: '317'
quality_controlled: '1'
scopus_import: 1
status: public
title: Succinct representation of concurrent trace sets
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '5436'
abstract:
- lang: eng
  text: "Recently there has been a significant effort to handle quantitative properties
    in formal verification and synthesis. While weighted automata over finite and
    infinite words provide a natural and flexible framework to express quantitative
    properties, perhaps surprisingly, some basic system properties such as average
    response time cannot be expressed using weighted automata, nor in any other know
    decidable formalism. In this work, we introduce nested weighted automata as a
    natural extension of weighted automata which makes it possible to express important
    quantitative properties such as average response time.\r\nIn nested weighted automata,
    a master automaton spins off and collects results from weighted slave automata,
    each of which computes a quantity along a finite portion of an infinite word.
    Nested weighted automata can be viewed as the quantitative analogue of monitor
    automata, which are used in run-time verification. We establish an almost complete
    decidability picture for the basic decision problems about nested weighted automata,
    and illustrate their applicability in several domains. In particular, nested weighted
    automata can be used to decide average response time properties."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Jan
  full_name: Otop, Jan
  id: 2FC5DA74-F248-11E8-B48F-1D18A9856A87
  last_name: Otop
citation:
  ama: Chatterjee K, Henzinger TA, Otop J. <i>Nested Weighted Automata</i>. IST Austria;
    2015. doi:<a href="https://doi.org/10.15479/AT:IST-2015-170-v2-2">10.15479/AT:IST-2015-170-v2-2</a>
  apa: Chatterjee, K., Henzinger, T. A., &#38; Otop, J. (2015). <i>Nested weighted
    automata</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2015-170-v2-2">https://doi.org/10.15479/AT:IST-2015-170-v2-2</a>
  chicago: Chatterjee, Krishnendu, Thomas A Henzinger, and Jan Otop. <i>Nested Weighted
    Automata</i>. IST Austria, 2015. <a href="https://doi.org/10.15479/AT:IST-2015-170-v2-2">https://doi.org/10.15479/AT:IST-2015-170-v2-2</a>.
  ieee: K. Chatterjee, T. A. Henzinger, and J. Otop, <i>Nested weighted automata</i>.
    IST Austria, 2015.
  ista: Chatterjee K, Henzinger TA, Otop J. 2015. Nested weighted automata, IST Austria,
    29p.
  mla: Chatterjee, Krishnendu, et al. <i>Nested Weighted Automata</i>. IST Austria,
    2015, doi:<a href="https://doi.org/10.15479/AT:IST-2015-170-v2-2">10.15479/AT:IST-2015-170-v2-2</a>.
  short: K. Chatterjee, T.A. Henzinger, J. Otop, Nested Weighted Automata, IST Austria,
    2015.
date_created: 2018-12-12T11:39:19Z
date_published: 2015-04-24T00:00:00Z
date_updated: 2023-02-23T12:25:21Z
day: '24'
ddc:
- '000'
department:
- _id: KrCh
- _id: ToHe
doi: 10.15479/AT:IST-2015-170-v2-2
file:
- access_level: open_access
  checksum: 3c402f47d3669c28d04d1af405a08e3f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:19Z
  date_updated: 2020-07-14T12:46:54Z
  file_id: '5541'
  file_name: IST-2015-170-v2+2_report.pdf
  file_size: 569991
  relation: main_file
file_date_updated: 2020-07-14T12:46:54Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: '29'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '331'
related_material:
  record:
  - id: '1656'
    relation: later_version
    status: public
  - id: '467'
    relation: later_version
    status: public
  - id: '5415'
    relation: earlier_version
    status: public
status: public
title: Nested weighted automata
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '5439'
abstract:
- lang: eng
  text: 'The target discounted-sum problem is the following: Given a rational discount
    factor 0 < λ < 1 and three rational values a, b, and t, does there exist a finite
    or an infinite sequence w ε(a, b)∗ or w ε(a, b)w, such that Σ|w| i=0 w(i)λi equals
    t? The problem turns out to relate to many fields of mathematics and computer
    science, and its decidability question is surprisingly hard to solve. We solve
    the finite version of the problem, and show the hardness of the infinite version,
    linking it to various areas and open problems in mathematics and computer science:
    β-expansions, discounted-sum automata, piecewise affine maps, and generalizations
    of the Cantor set. We provide some partial results to the infinite version, among
    which are solutions to its restriction to eventually-periodic sequences and to
    the cases that λ λ 1/2 or λ = 1/n, for every n ε N. We use our results for solving
    some open problems on discounted-sum automata, among which are the exact-value
    problem for nondeterministic automata over finite words and the universality and
    inclusion problems for functional automata. '
alternative_title:
- IST Austria Technical Report
author:
- first_name: Udi
  full_name: Boker, Udi
  id: 31E297B6-F248-11E8-B48F-1D18A9856A87
  last_name: Boker
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Jan
  full_name: Otop, Jan
  id: 2FC5DA74-F248-11E8-B48F-1D18A9856A87
  last_name: Otop
citation:
  ama: Boker U, Henzinger TA, Otop J. <i>The Target Discounted-Sum Problem</i>. IST
    Austria; 2015. doi:<a href="https://doi.org/10.15479/AT:IST-2015-335-v1-1">10.15479/AT:IST-2015-335-v1-1</a>
  apa: Boker, U., Henzinger, T. A., &#38; Otop, J. (2015). <i>The target discounted-sum
    problem</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2015-335-v1-1">https://doi.org/10.15479/AT:IST-2015-335-v1-1</a>
  chicago: Boker, Udi, Thomas A Henzinger, and Jan Otop. <i>The Target Discounted-Sum
    Problem</i>. IST Austria, 2015. <a href="https://doi.org/10.15479/AT:IST-2015-335-v1-1">https://doi.org/10.15479/AT:IST-2015-335-v1-1</a>.
  ieee: U. Boker, T. A. Henzinger, and J. Otop, <i>The target discounted-sum problem</i>.
    IST Austria, 2015.
  ista: Boker U, Henzinger TA, Otop J. 2015. The target discounted-sum problem, IST
    Austria, 20p.
  mla: Boker, Udi, et al. <i>The Target Discounted-Sum Problem</i>. IST Austria, 2015,
    doi:<a href="https://doi.org/10.15479/AT:IST-2015-335-v1-1">10.15479/AT:IST-2015-335-v1-1</a>.
  short: U. Boker, T.A. Henzinger, J. Otop, The Target Discounted-Sum Problem, IST
    Austria, 2015.
date_created: 2018-12-12T11:39:20Z
date_published: 2015-05-18T00:00:00Z
date_updated: 2023-02-23T10:08:48Z
day: '18'
ddc:
- '004'
- '512'
- '513'
department:
- _id: ToHe
doi: 10.15479/AT:IST-2015-335-v1-1
file:
- access_level: open_access
  checksum: 40405907aa012acece1bc26cf0be554d
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:55Z
  date_updated: 2020-07-14T12:46:55Z
  file_id: '5517'
  file_name: IST-2015-335-v1+1_report.pdf
  file_size: 589619
  relation: main_file
file_date_updated: 2020-07-14T12:46:55Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '20'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '335'
related_material:
  record:
  - id: '1659'
    relation: later_version
    status: public
status: public
title: The target discounted-sum problem
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '5549'
abstract:
- lang: eng
  text: "This repository contains the experimental part of the CAV 2015 publication
    Counterexample Explanation by Learning Small Strategies in Markov Decision Processes.\r\nWe
    extended the probabilistic model checker PRISM to represent strategies of Markov
    Decision Processes as Decision Trees.\r\nThe archive contains a java executable
    version of the extended tool (prism_dectree.jar) together with a few examples
    of the PRISM benchmark library.\r\nTo execute the program, please have a look
    at the README.txt, which provides instructions and further information on the
    archive.\r\nThe archive contains scripts that (if run often enough) reproduces
    the data presented in the publication."
article_processing_charge: No
author:
- first_name: Andreas
  full_name: Fellner, Andreas
  id: 42BABFB4-F248-11E8-B48F-1D18A9856A87
  last_name: Fellner
citation:
  ama: 'Fellner A. Experimental part of CAV 2015 publication: Counterexample Explanation
    by Learning Small Strategies in Markov Decision Processes. 2015. doi:<a href="https://doi.org/10.15479/AT:ISTA:28">10.15479/AT:ISTA:28</a>'
  apa: 'Fellner, A. (2015). Experimental part of CAV 2015 publication: Counterexample
    Explanation by Learning Small Strategies in Markov Decision Processes. Institute
    of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:28">https://doi.org/10.15479/AT:ISTA:28</a>'
  chicago: 'Fellner, Andreas. “Experimental Part of CAV 2015 Publication: Counterexample
    Explanation by Learning Small Strategies in Markov Decision Processes.” Institute
    of Science and Technology Austria, 2015. <a href="https://doi.org/10.15479/AT:ISTA:28">https://doi.org/10.15479/AT:ISTA:28</a>.'
  ieee: 'A. Fellner, “Experimental part of CAV 2015 publication: Counterexample Explanation
    by Learning Small Strategies in Markov Decision Processes.” Institute of Science
    and Technology Austria, 2015.'
  ista: 'Fellner A. 2015. Experimental part of CAV 2015 publication: Counterexample
    Explanation by Learning Small Strategies in Markov Decision Processes, Institute
    of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:28">10.15479/AT:ISTA:28</a>.'
  mla: 'Fellner, Andreas. <i>Experimental Part of CAV 2015 Publication: Counterexample
    Explanation by Learning Small Strategies in Markov Decision Processes</i>. Institute
    of Science and Technology Austria, 2015, doi:<a href="https://doi.org/10.15479/AT:ISTA:28">10.15479/AT:ISTA:28</a>.'
  short: A. Fellner, (2015).
contributor:
- first_name: Jan
  id: 44CEF464-F248-11E8-B48F-1D18A9856A87
  last_name: Kretinsky
datarep_id: '28'
date_created: 2018-12-12T12:31:29Z
date_published: 2015-08-13T00:00:00Z
date_updated: 2024-02-21T13:52:07Z
day: '13'
ddc:
- '004'
department:
- _id: KrCh
- _id: ToHe
doi: 10.15479/AT:ISTA:28
ec_funded: 1
file:
- access_level: open_access
  checksum: b8bcb43c0893023cda66c1b69c16ac62
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:02:31Z
  date_updated: 2020-07-14T12:47:00Z
  file_id: '5597'
  file_name: IST-2015-28-v1+2_Fellner_DataRep.zip
  file_size: 49557109
  relation: main_file
file_date_updated: 2020-07-14T12:47:00Z
has_accepted_license: '1'
keyword:
- Markov Decision Process
- Decision Tree
- Probabilistic Verification
- Counterexample Explanation
license: https://creativecommons.org/publicdomain/zero/1.0/
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publisher: Institute of Science and Technology Austria
publist_id: '5564'
related_material:
  record:
  - id: '1603'
    relation: popular_science
    status: public
status: public
title: 'Experimental part of CAV 2015 publication: Counterexample Explanation by Learning
  Small Strategies in Markov Decision Processes'
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '10794'
abstract:
- lang: eng
  text: Mathematical models are of fundamental importance in the understanding of
    complex population dynamics. For instance, they can be used to predict the population
    evolution starting from different initial conditions or to test how a system responds
    to external perturbations. For this analysis to be meaningful in real applications,
    however, it is of paramount importance to choose an appropriate model structure
    and to infer the model parameters from measured data. While many parameter inference
    methods are available for models based on deterministic ordinary differential
    equations, the same does not hold for more detailed individual-based models. Here
    we consider, in particular, stochastic models in which the time evolution of the
    species abundances is described by a continuous-time Markov chain. These models
    are governed by a master equation that is typically difficult to solve. Consequently,
    traditional inference methods that rely on iterative evaluation of parameter likelihoods
    are computationally intractable. The aim of this paper is to present recent advances
    in parameter inference for continuous-time Markov chain models, based on a moment
    closure approximation of the parameter likelihood, and to investigate how these
    results can help in understanding, and ultimately controlling, complex systems
    in ecology. Specifically, we illustrate through an agricultural pest case study
    how parameters of a stochastic individual-based model can be identified from measured
    data and how the resulting model can be used to solve an optimal control problem
    in a stochastic setting. In particular, we show how the matter of determining
    the optimal combination of two different pest control methods can be formulated
    as a chance constrained optimization problem where the control action is modeled
    as a state reset, leading to a hybrid system formulation.
acknowledgement: "The authors would like to acknowledge contributions from Baptiste
  Mottet who performed preliminary analysis regarding parameter inference for the
  considered case study in a student project (Mottet, 2014/2015).\r\nThe research
  leading to these results has received funding from the People Programme (Marie Curie
  Actions) of the European Union's Seventh Framework Programme (FP7/2007-2013) under
  REA grant agreement No. [291734] and from SystemsX under the project SignalX."
article_number: '42'
article_processing_charge: No
article_type: original
author:
- first_name: Francesca
  full_name: Parise, Francesca
  last_name: Parise
- first_name: John
  full_name: Lygeros, John
  last_name: Lygeros
- first_name: Jakob
  full_name: Ruess, Jakob
  id: 4A245D00-F248-11E8-B48F-1D18A9856A87
  last_name: Ruess
  orcid: 0000-0003-1615-3282
citation:
  ama: 'Parise F, Lygeros J, Ruess J. Bayesian inference for stochastic individual-based
    models of ecological systems: a pest control simulation study. <i>Frontiers in
    Environmental Science</i>. 2015;3. doi:<a href="https://doi.org/10.3389/fenvs.2015.00042">10.3389/fenvs.2015.00042</a>'
  apa: 'Parise, F., Lygeros, J., &#38; Ruess, J. (2015). Bayesian inference for stochastic
    individual-based models of ecological systems: a pest control simulation study.
    <i>Frontiers in Environmental Science</i>. Frontiers. <a href="https://doi.org/10.3389/fenvs.2015.00042">https://doi.org/10.3389/fenvs.2015.00042</a>'
  chicago: 'Parise, Francesca, John Lygeros, and Jakob Ruess. “Bayesian Inference
    for Stochastic Individual-Based Models of Ecological Systems: A Pest Control Simulation
    Study.” <i>Frontiers in Environmental Science</i>. Frontiers, 2015. <a href="https://doi.org/10.3389/fenvs.2015.00042">https://doi.org/10.3389/fenvs.2015.00042</a>.'
  ieee: 'F. Parise, J. Lygeros, and J. Ruess, “Bayesian inference for stochastic individual-based
    models of ecological systems: a pest control simulation study,” <i>Frontiers in
    Environmental Science</i>, vol. 3. Frontiers, 2015.'
  ista: 'Parise F, Lygeros J, Ruess J. 2015. Bayesian inference for stochastic individual-based
    models of ecological systems: a pest control simulation study. Frontiers in Environmental
    Science. 3, 42.'
  mla: 'Parise, Francesca, et al. “Bayesian Inference for Stochastic Individual-Based
    Models of Ecological Systems: A Pest Control Simulation Study.” <i>Frontiers in
    Environmental Science</i>, vol. 3, 42, Frontiers, 2015, doi:<a href="https://doi.org/10.3389/fenvs.2015.00042">10.3389/fenvs.2015.00042</a>.'
  short: F. Parise, J. Lygeros, J. Ruess, Frontiers in Environmental Science 3 (2015).
date_created: 2022-02-25T11:42:25Z
date_published: 2015-06-10T00:00:00Z
date_updated: 2022-02-25T11:59:23Z
day: '10'
ddc:
- '000'
- '570'
department:
- _id: ToHe
- _id: GaTk
doi: 10.3389/fenvs.2015.00042
ec_funded: 1
file:
- access_level: open_access
  checksum: 26c222487564e1be02a11d688d6f769d
  content_type: application/pdf
  creator: dernst
  date_created: 2022-02-25T11:55:26Z
  date_updated: 2022-02-25T11:55:26Z
  file_id: '10795'
  file_name: 2015_FrontiersEnvironmScience_Parise.pdf
  file_size: 1371201
  relation: main_file
  success: 1
file_date_updated: 2022-02-25T11:55:26Z
has_accepted_license: '1'
intvolume: '         3'
keyword:
- General Environmental Science
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Frontiers in Environmental Science
publication_identifier:
  issn:
  - 2296-665X
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Bayesian inference for stochastic individual-based models of ecological systems:
  a pest control simulation study'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2015'
...
---
_id: '1702'
abstract:
- lang: eng
  text: In this paper we present INTERHORN, a solver for recursion-free Horn clauses.
    The main application domain of INTERHORN lies in solving interpolation problems
    arising in software verification. We show how a range of interpolation problems,
    including path, transition, nested, state/transition and well-founded interpolation
    can be handled directly by INTERHORN. By detailing these interpolation problems
    and their Horn clause representations, we hope to encourage the emergence of a
    common back-end interpolation interface useful for diverse verification tools.
alternative_title:
- EPTCS
author:
- first_name: Ashutosh
  full_name: Gupta, Ashutosh
  id: 335E5684-F248-11E8-B48F-1D18A9856A87
  last_name: Gupta
- first_name: Corneliu
  full_name: Popeea, Corneliu
  last_name: Popeea
- first_name: Andrey
  full_name: Rybalchenko, Andrey
  last_name: Rybalchenko
citation:
  ama: 'Gupta A, Popeea C, Rybalchenko A. Generalised interpolation by solving recursion
    free-horn clauses. In: <i>Electronic Proceedings in Theoretical Computer Science,
    EPTCS</i>. Vol 169. Open Publishing; 2014:31-38. doi:<a href="https://doi.org/10.4204/EPTCS.169.5">10.4204/EPTCS.169.5</a>'
  apa: 'Gupta, A., Popeea, C., &#38; Rybalchenko, A. (2014). Generalised interpolation
    by solving recursion free-horn clauses. In <i>Electronic Proceedings in Theoretical
    Computer Science, EPTCS</i> (Vol. 169, pp. 31–38). Vienna, Austria: Open Publishing.
    <a href="https://doi.org/10.4204/EPTCS.169.5">https://doi.org/10.4204/EPTCS.169.5</a>'
  chicago: Gupta, Ashutosh, Corneliu Popeea, and Andrey Rybalchenko. “Generalised
    Interpolation by Solving Recursion Free-Horn Clauses.” In <i>Electronic Proceedings
    in Theoretical Computer Science, EPTCS</i>, 169:31–38. Open Publishing, 2014.
    <a href="https://doi.org/10.4204/EPTCS.169.5">https://doi.org/10.4204/EPTCS.169.5</a>.
  ieee: A. Gupta, C. Popeea, and A. Rybalchenko, “Generalised interpolation by solving
    recursion free-horn clauses,” in <i>Electronic Proceedings in Theoretical Computer
    Science, EPTCS</i>, Vienna, Austria, 2014, vol. 169, pp. 31–38.
  ista: 'Gupta A, Popeea C, Rybalchenko A. 2014. Generalised interpolation by solving
    recursion free-horn clauses. Electronic Proceedings in Theoretical Computer Science,
    EPTCS. HCVS: Horn Clauses for Verification and Synthesis, EPTCS, vol. 169, 31–38.'
  mla: Gupta, Ashutosh, et al. “Generalised Interpolation by Solving Recursion Free-Horn
    Clauses.” <i>Electronic Proceedings in Theoretical Computer Science, EPTCS</i>,
    vol. 169, Open Publishing, 2014, pp. 31–38, doi:<a href="https://doi.org/10.4204/EPTCS.169.5">10.4204/EPTCS.169.5</a>.
  short: A. Gupta, C. Popeea, A. Rybalchenko, in:, Electronic Proceedings in Theoretical
    Computer Science, EPTCS, Open Publishing, 2014, pp. 31–38.
conference:
  end_date: 2014-07-17
  location: Vienna, Austria
  name: 'HCVS: Horn Clauses for Verification and Synthesis'
  start_date: 2014-07-17
date_created: 2018-12-11T11:53:33Z
date_published: 2014-12-02T00:00:00Z
date_updated: 2021-01-12T06:52:38Z
day: '02'
department:
- _id: ToHe
doi: 10.4204/EPTCS.169.5
intvolume: '       169'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1303.7378v2
month: '12'
oa: 1
oa_version: Submitted Version
page: 31 - 38
publication: Electronic Proceedings in Theoretical Computer Science, EPTCS
publication_status: published
publisher: Open Publishing
publist_id: '5435'
quality_controlled: '1'
status: public
title: Generalised interpolation by solving recursion free-horn clauses
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 169
year: '2014'
...
---
_id: '1733'
abstract:
- lang: eng
  text: The classical (boolean) notion of refinement for behavioral interfaces of
    system components is the alternating refinement preorder. In this paper, we define
    a distance for interfaces, called interface simulation distance. It makes the
    alternating refinement preorder quantitative by, intuitively, tolerating errors
    (while counting them) in the alternating simulation game. We show that the interface
    simulation distance satisfies the triangle inequality, that the distance between
    two interfaces does not increase under parallel composition with a third interface,
    that the distance between two interfaces can be bounded from above and below by
    distances between abstractions of the two interfaces, and how to synthesize an
    interface from incompatible requirements. We illustrate the framework, and the
    properties of the distances under composition of interfaces, with two case studies.
author:
- first_name: Pavol
  full_name: Cerny, Pavol
  last_name: Cerny
- first_name: Martin
  full_name: Chmelik, Martin
  id: 3624234E-F248-11E8-B48F-1D18A9856A87
  last_name: Chmelik
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Arjun
  full_name: Radhakrishna, Arjun
  id: 3B51CAC4-F248-11E8-B48F-1D18A9856A87
  last_name: Radhakrishna
citation:
  ama: Cerny P, Chmelik M, Henzinger TA, Radhakrishna A. Interface simulation distances.
    <i>Theoretical Computer Science</i>. 2014;560(3):348-363. doi:<a href="https://doi.org/10.1016/j.tcs.2014.08.019">10.1016/j.tcs.2014.08.019</a>
  apa: Cerny, P., Chmelik, M., Henzinger, T. A., &#38; Radhakrishna, A. (2014). Interface
    simulation distances. <i>Theoretical Computer Science</i>. Elsevier. <a href="https://doi.org/10.1016/j.tcs.2014.08.019">https://doi.org/10.1016/j.tcs.2014.08.019</a>
  chicago: Cerny, Pavol, Martin Chmelik, Thomas A Henzinger, and Arjun Radhakrishna.
    “Interface Simulation Distances.” <i>Theoretical Computer Science</i>. Elsevier,
    2014. <a href="https://doi.org/10.1016/j.tcs.2014.08.019">https://doi.org/10.1016/j.tcs.2014.08.019</a>.
  ieee: P. Cerny, M. Chmelik, T. A. Henzinger, and A. Radhakrishna, “Interface simulation
    distances,” <i>Theoretical Computer Science</i>, vol. 560, no. 3. Elsevier, pp.
    348–363, 2014.
  ista: Cerny P, Chmelik M, Henzinger TA, Radhakrishna A. 2014. Interface simulation
    distances. Theoretical Computer Science. 560(3), 348–363.
  mla: Cerny, Pavol, et al. “Interface Simulation Distances.” <i>Theoretical Computer
    Science</i>, vol. 560, no. 3, Elsevier, 2014, pp. 348–63, doi:<a href="https://doi.org/10.1016/j.tcs.2014.08.019">10.1016/j.tcs.2014.08.019</a>.
  short: P. Cerny, M. Chmelik, T.A. Henzinger, A. Radhakrishna, Theoretical Computer
    Science 560 (2014) 348–363.
date_created: 2018-12-11T11:53:43Z
date_published: 2014-12-04T00:00:00Z
date_updated: 2023-02-23T11:04:00Z
day: '04'
department:
- _id: ToHe
- _id: KrCh
doi: 10.1016/j.tcs.2014.08.019
ec_funded: 1
intvolume: '       560'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1210.2450
month: '12'
oa: 1
oa_version: Submitted Version
page: 348 - 363
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25F5A88A-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11402-N23
  name: Moderne Concurrency Paradigms
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: Theoretical Computer Science
publication_status: published
publisher: Elsevier
publist_id: '5392'
quality_controlled: '1'
related_material:
  record:
  - id: '2916'
    relation: earlier_version
    status: public
scopus_import: 1
status: public
title: Interface simulation distances
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 560
year: '2014'
...
---
_id: '1869'
abstract:
- lang: eng
  text: Boolean controllers for systems with complex datapaths are often very difficult
    to implement correctly, in particular when concurrency is involved. Yet, in many
    instances it is easy to formally specify correctness. For example, the specification
    for the controller of a pipelined processor only has to state that the pipelined
    processor gives the same results as a non-pipelined reference design. This makes
    such controllers a good target for automated synthesis. However, an efficient
    abstraction for the complex datapath elements is needed, as a bit-precise description
    is often infeasible. We present Suraq, the first controller synthesis tool which
    uses uninterpreted functions for the abstraction. Quantified firstorder formulas
    (with specific quantifier structure) serve as the specification language from
    which Suraq synthesizes Boolean controllers. Suraq transforms the specification
    into an unsatisfiable SMT formula, and uses Craig interpolation to compute its
    results. Using Suraq, we were able to synthesize a controller (consisting of two
    Boolean signals) for a five-stage pipelined DLX processor in roughly one hour
    and 15 minutes.
acknowledgement: The work presented in this paper was supported in part by the European
  Research Council (ERC) under grant agreement QUAINT (I774-N23)
alternative_title:
- LNCS
author:
- first_name: Georg
  full_name: Hofferek, Georg
  last_name: Hofferek
- first_name: Ashutosh
  full_name: Gupta, Ashutosh
  id: 335E5684-F248-11E8-B48F-1D18A9856A87
  last_name: Gupta
citation:
  ama: 'Hofferek G, Gupta A. Suraq - a controller synthesis tool using uninterpreted
    functions. In: Yahav E, ed. <i>HVC 2014</i>. Vol 8855. Springer; 2014:68-74. doi:<a
    href="https://doi.org/10.1007/978-3-319-13338-6_6">10.1007/978-3-319-13338-6_6</a>'
  apa: 'Hofferek, G., &#38; Gupta, A. (2014). Suraq - a controller synthesis tool
    using uninterpreted functions. In E. Yahav (Ed.), <i>HVC 2014</i> (Vol. 8855,
    pp. 68–74). Haifa, Israel: Springer. <a href="https://doi.org/10.1007/978-3-319-13338-6_6">https://doi.org/10.1007/978-3-319-13338-6_6</a>'
  chicago: Hofferek, Georg, and Ashutosh Gupta. “Suraq - a Controller Synthesis Tool
    Using Uninterpreted Functions.” In <i>HVC 2014</i>, edited by Eran Yahav, 8855:68–74.
    Springer, 2014. <a href="https://doi.org/10.1007/978-3-319-13338-6_6">https://doi.org/10.1007/978-3-319-13338-6_6</a>.
  ieee: G. Hofferek and A. Gupta, “Suraq - a controller synthesis tool using uninterpreted
    functions,” in <i>HVC 2014</i>, Haifa, Israel, 2014, vol. 8855, pp. 68–74.
  ista: 'Hofferek G, Gupta A. 2014. Suraq - a controller synthesis tool using uninterpreted
    functions. HVC 2014. HVC: Haifa Verification Conference, LNCS, vol. 8855, 68–74.'
  mla: Hofferek, Georg, and Ashutosh Gupta. “Suraq - a Controller Synthesis Tool Using
    Uninterpreted Functions.” <i>HVC 2014</i>, edited by Eran Yahav, vol. 8855, Springer,
    2014, pp. 68–74, doi:<a href="https://doi.org/10.1007/978-3-319-13338-6_6">10.1007/978-3-319-13338-6_6</a>.
  short: G. Hofferek, A. Gupta, in:, E. Yahav (Ed.), HVC 2014, Springer, 2014, pp.
    68–74.
conference:
  end_date: 2014-11-20
  location: Haifa, Israel
  name: 'HVC: Haifa Verification Conference'
  start_date: 2014-11-18
date_created: 2018-12-11T11:54:27Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2021-01-12T06:53:44Z
day: '01'
department:
- _id: ToHe
doi: 10.1007/978-3-319-13338-6_6
ec_funded: 1
editor:
- first_name: Eran
  full_name: Yahav, Eran
  last_name: Yahav
intvolume: '      8855'
language:
- iso: eng
month: '01'
oa_version: None
page: 68 - 74
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
publication: HVC 2014
publication_status: published
publisher: Springer
publist_id: '5228'
quality_controlled: '1'
status: public
title: Suraq - a controller synthesis tool using uninterpreted functions
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 8855
year: '2014'
...
---
_id: '1870'
abstract:
- lang: eng
  text: We investigate the problem of checking if a finite-state transducer is robust
    to uncertainty in its input. Our notion of robustness is based on the analytic
    notion of Lipschitz continuity - a transducer is K-(Lipschitz) robust if the perturbation
    in its output is at most K times the perturbation in its input. We quantify input
    and output perturbation using similarity functions. We show that K-robustness
    is undecidable even for deterministic transducers. We identify a class of functional
    transducers, which admits a polynomial time automata-theoretic decision procedure
    for K-robustness. This class includes Mealy machines and functional letter-to-letter
    transducers. We also study K-robustness of nondeterministic transducers. Since
    a nondeterministic transducer generates a set of output words for each input word,
    we quantify output perturbation using setsimilarity functions. We show that K-robustness
    of nondeterministic transducers is undecidable, even for letter-to-letter transducers.
    We identify a class of set-similarity functions which admit decidable K-robustness
    of letter-to-letter transducers.
alternative_title:
- LIPIcs
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Jan
  full_name: Otop, Jan
  id: 2FC5DA74-F248-11E8-B48F-1D18A9856A87
  last_name: Otop
- first_name: Roopsha
  full_name: Samanta, Roopsha
  id: 3D2AAC08-F248-11E8-B48F-1D18A9856A87
  last_name: Samanta
citation:
  ama: 'Henzinger TA, Otop J, Samanta R. Lipschitz robustness of finite-state transducers.
    In: <i>Leibniz International Proceedings in Informatics, LIPIcs</i>. Vol 29. Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik; 2014:431-443. doi:<a href="https://doi.org/10.4230/LIPIcs.FSTTCS.2014.431">10.4230/LIPIcs.FSTTCS.2014.431</a>'
  apa: 'Henzinger, T. A., Otop, J., &#38; Samanta, R. (2014). Lipschitz robustness
    of finite-state transducers. In <i>Leibniz International Proceedings in Informatics,
    LIPIcs</i> (Vol. 29, pp. 431–443). Delhi, India: Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik. <a href="https://doi.org/10.4230/LIPIcs.FSTTCS.2014.431">https://doi.org/10.4230/LIPIcs.FSTTCS.2014.431</a>'
  chicago: Henzinger, Thomas A, Jan Otop, and Roopsha Samanta. “Lipschitz Robustness
    of Finite-State Transducers.” In <i>Leibniz International Proceedings in Informatics,
    LIPIcs</i>, 29:431–43. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2014.
    <a href="https://doi.org/10.4230/LIPIcs.FSTTCS.2014.431">https://doi.org/10.4230/LIPIcs.FSTTCS.2014.431</a>.
  ieee: T. A. Henzinger, J. Otop, and R. Samanta, “Lipschitz robustness of finite-state
    transducers,” in <i>Leibniz International Proceedings in Informatics, LIPIcs</i>,
    Delhi, India, 2014, vol. 29, pp. 431–443.
  ista: 'Henzinger TA, Otop J, Samanta R. 2014. Lipschitz robustness of finite-state
    transducers. Leibniz International Proceedings in Informatics, LIPIcs. FSTTCS:
    Foundations of Software Technology and Theoretical Computer Science, LIPIcs, vol.
    29, 431–443.'
  mla: Henzinger, Thomas A., et al. “Lipschitz Robustness of Finite-State Transducers.”
    <i>Leibniz International Proceedings in Informatics, LIPIcs</i>, vol. 29, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2014, pp. 431–43, doi:<a href="https://doi.org/10.4230/LIPIcs.FSTTCS.2014.431">10.4230/LIPIcs.FSTTCS.2014.431</a>.
  short: T.A. Henzinger, J. Otop, R. Samanta, in:, Leibniz International Proceedings
    in Informatics, LIPIcs, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2014,
    pp. 431–443.
conference:
  end_date: 2014-12-17
  location: Delhi, India
  name: 'FSTTCS: Foundations of Software Technology and Theoretical Computer Science'
  start_date: 2014-12-15
date_created: 2018-12-11T11:54:27Z
date_published: 2014-12-01T00:00:00Z
date_updated: 2021-01-12T06:53:45Z
day: '01'
ddc:
- '004'
department:
- _id: ToHe
doi: 10.4230/LIPIcs.FSTTCS.2014.431
file:
- access_level: open_access
  checksum: 7b1aff1710a8bffb7080ec07f62d9a17
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  creator: system
  date_created: 2018-12-12T10:09:11Z
  date_updated: 2020-07-14T12:45:19Z
  file_id: '4734'
  file_name: IST-2017-804-v1+1_37.pdf
  file_size: 562151
  relation: main_file
file_date_updated: 2020-07-14T12:45:19Z
has_accepted_license: '1'
intvolume: '        29'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 431 - 443
publication: Leibniz International Proceedings in Informatics, LIPIcs
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '5227'
pubrep_id: '804'
quality_controlled: '1'
status: public
title: Lipschitz robustness of finite-state transducers
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 29
year: '2014'
...
---
_id: '1872'
abstract:
- lang: eng
  text: Extensionality axioms are common when reasoning about data collections, such
    as arrays and functions in program analysis, or sets in mathematics. An extensionality
    axiom asserts that two collections are equal if they consist of the same elements
    at the same indices. Using extensionality is often required to show that two collections
    are equal. A typical example is the set theory theorem (∀x)(∀y)x∪y = y ∪x. Interestingly,
    while humans have no problem with proving such set identities using extensionality,
    they are very hard for superposition theorem provers because of the calculi they
    use. In this paper we show how addition of a new inference rule, called extensionality
    resolution, allows first-order theorem provers to easily solve problems no modern
    first-order theorem prover can solve. We illustrate this by running the VAMPIRE
    theorem prover with extensionality resolution on a number of set theory and array
    problems. Extensionality resolution helps VAMPIRE to solve problems from the TPTP
    library of first-order problems that were never solved before by any prover.
acknowledgement: This research was supported in part by the Austrian National Research
  Network RiSE (S11410-N23).
alternative_title:
- LNCS
author:
- first_name: Ashutosh
  full_name: Gupta, Ashutosh
  id: 335E5684-F248-11E8-B48F-1D18A9856A87
  last_name: Gupta
- first_name: Laura
  full_name: Kovács, Laura
  last_name: Kovács
- first_name: Bernhard
  full_name: Kragl, Bernhard
  id: 320FC952-F248-11E8-B48F-1D18A9856A87
  last_name: Kragl
  orcid: 0000-0001-7745-9117
- first_name: Andrei
  full_name: Voronkov, Andrei
  last_name: Voronkov
citation:
  ama: 'Gupta A, Kovács L, Kragl B, Voronkov A. Extensional crisis and proving identity.
    In: Cassez F, Raskin J-F, eds. <i>ATVA 2014</i>. Vol 8837. Springer; 2014:185-200.
    doi:<a href="https://doi.org/10.1007/978-3-319-11936-6_14">10.1007/978-3-319-11936-6_14</a>'
  apa: 'Gupta, A., Kovács, L., Kragl, B., &#38; Voronkov, A. (2014). Extensional crisis
    and proving identity. In F. Cassez &#38; J.-F. Raskin (Eds.), <i>ATVA 2014</i>
    (Vol. 8837, pp. 185–200). Sydney, Australia: Springer. <a href="https://doi.org/10.1007/978-3-319-11936-6_14">https://doi.org/10.1007/978-3-319-11936-6_14</a>'
  chicago: Gupta, Ashutosh, Laura Kovács, Bernhard Kragl, and Andrei Voronkov. “Extensional
    Crisis and Proving Identity.” In <i>ATVA 2014</i>, edited by Franck Cassez and
    Jean-François Raskin, 8837:185–200. Springer, 2014. <a href="https://doi.org/10.1007/978-3-319-11936-6_14">https://doi.org/10.1007/978-3-319-11936-6_14</a>.
  ieee: A. Gupta, L. Kovács, B. Kragl, and A. Voronkov, “Extensional crisis and proving
    identity,” in <i>ATVA 2014</i>, Sydney, Australia, 2014, vol. 8837, pp. 185–200.
  ista: 'Gupta A, Kovács L, Kragl B, Voronkov A. 2014. Extensional crisis and proving
    identity. ATVA 2014. ATVA: Automated Technology for Verification and Analysis,
    LNCS, vol. 8837, 185–200.'
  mla: Gupta, Ashutosh, et al. “Extensional Crisis and Proving Identity.” <i>ATVA
    2014</i>, edited by Franck Cassez and Jean-François Raskin, vol. 8837, Springer,
    2014, pp. 185–200, doi:<a href="https://doi.org/10.1007/978-3-319-11936-6_14">10.1007/978-3-319-11936-6_14</a>.
  short: A. Gupta, L. Kovács, B. Kragl, A. Voronkov, in:, F. Cassez, J.-F. Raskin
    (Eds.), ATVA 2014, Springer, 2014, pp. 185–200.
conference:
  end_date: 2014-11-07
  location: Sydney, Australia
  name: 'ATVA: Automated Technology for Verification and Analysis'
  start_date: 2014-11-03
date_created: 2018-12-11T11:54:28Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2021-01-12T06:53:45Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-319-11936-6_14
ec_funded: 1
editor:
- first_name: Franck
  full_name: Cassez, Franck
  last_name: Cassez
- first_name: Jean-François
  full_name: Raskin, Jean-François
  last_name: Raskin
file:
- access_level: open_access
  checksum: af4bd3fc1f4c93075e4dc5cbf625fe7b
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:10:15Z
  date_updated: 2020-07-14T12:45:19Z
  file_id: '4801'
  file_name: IST-2016-641-v1+1_atva2014.pdf
  file_size: 244294
  relation: main_file
file_date_updated: 2020-07-14T12:45:19Z
has_accepted_license: '1'
intvolume: '      8837'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 185 - 200
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25F5A88A-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11402-N23
  name: Moderne Concurrency Paradigms
publication: ATVA 2014
publication_status: published
publisher: Springer
publist_id: '5226'
pubrep_id: '641'
quality_controlled: '1'
scopus_import: 1
status: public
title: Extensional crisis and proving identity
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 8837
year: '2014'
...
