---
_id: '10145'
abstract:
- lang: eng
text: We study direct integrals of quadratic and Dirichlet forms. We show that each
quasi-regular Dirichlet space over a probability space admits a unique representation
as a direct integral of irreducible Dirichlet spaces, quasi-regular for the same
underlying topology. The same holds for each quasi-regular strongly local Dirichlet
space over a metrizable Luzin σ-finite Radon measure space, and admitting carré
du champ operator. In this case, the representation is only projectively unique.
acknowledgement: The author is grateful to Professors Sergio Albeverio and Andreas
Eberle, and to Dr. Kohei Suzuki, for fruitful conversations on the subject of the
present work, and for respectively pointing out the references [1, 13], and [3,
20]. Finally, he is especially grateful to an anonymous Reviewer for their very
careful reading and their suggestions which improved the readability of the paper.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Lorenzo
full_name: Dello Schiavo, Lorenzo
id: ECEBF480-9E4F-11EA-B557-B0823DDC885E
last_name: Dello Schiavo
orcid: 0000-0002-9881-6870
citation:
ama: Dello Schiavo L. Ergodic decomposition of Dirichlet forms via direct integrals
and applications. Potential Analysis. 2023;58:573-615. doi:10.1007/s11118-021-09951-y
apa: Dello Schiavo, L. (2023). Ergodic decomposition of Dirichlet forms via direct
integrals and applications. Potential Analysis. Springer Nature. https://doi.org/10.1007/s11118-021-09951-y
chicago: Dello Schiavo, Lorenzo. “Ergodic Decomposition of Dirichlet Forms via Direct
Integrals and Applications.” Potential Analysis. Springer Nature, 2023.
https://doi.org/10.1007/s11118-021-09951-y.
ieee: L. Dello Schiavo, “Ergodic decomposition of Dirichlet forms via direct integrals
and applications,” Potential Analysis, vol. 58. Springer Nature, pp. 573–615,
2023.
ista: Dello Schiavo L. 2023. Ergodic decomposition of Dirichlet forms via direct
integrals and applications. Potential Analysis. 58, 573–615.
mla: Dello Schiavo, Lorenzo. “Ergodic Decomposition of Dirichlet Forms via Direct
Integrals and Applications.” Potential Analysis, vol. 58, Springer Nature,
2023, pp. 573–615, doi:10.1007/s11118-021-09951-y.
short: L. Dello Schiavo, Potential Analysis 58 (2023) 573–615.
date_created: 2021-10-17T22:01:17Z
date_published: 2023-03-01T00:00:00Z
date_updated: 2023-10-04T09:19:12Z
day: '01'
ddc:
- '510'
department:
- _id: JaMa
doi: 10.1007/s11118-021-09951-y
ec_funded: 1
external_id:
arxiv:
- '2003.01366'
isi:
- '000704213400001'
file:
- access_level: open_access
checksum: 625526482be300ca7281c91c30d41725
content_type: application/pdf
creator: dernst
date_created: 2023-10-04T09:18:59Z
date_updated: 2023-10-04T09:18:59Z
file_id: '14387'
file_name: 2023_PotentialAnalysis_DelloSchiavo.pdf
file_size: 806391
relation: main_file
success: 1
file_date_updated: 2023-10-04T09:18:59Z
has_accepted_license: '1'
intvolume: ' 58'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 573-615
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
grant_number: F6504
name: Taming Complexity in Partial Differential Systems
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
publication: Potential Analysis
publication_identifier:
eissn:
- 1572-929X
issn:
- 0926-2601
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ergodic decomposition of Dirichlet forms via direct integrals and applications
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 58
year: '2023'
...
---
_id: '10173'
abstract:
- lang: eng
text: We study the large scale behavior of elliptic systems with stationary random
coefficient that have only slowly decaying correlations. To this aim we analyze
the so-called corrector equation, a degenerate elliptic equation posed in the
probability space. In this contribution, we use a parabolic approach and optimally
quantify the time decay of the semigroup. For the theoretical point of view, we
prove an optimal decay estimate of the gradient and flux of the corrector when
spatially averaged over a scale R larger than 1. For the numerical point of view,
our results provide convenient tools for the analysis of various numerical methods.
acknowledgement: "I would like to thank my advisor Antoine Gloria for suggesting this
problem to me, as well for many interesting discussions and suggestions.\r\nOpen
access funding provided by Institute of Science and Technology (IST Austria)."
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Nicolas
full_name: Clozeau, Nicolas
id: fea1b376-906f-11eb-847d-b2c0cf46455b
last_name: Clozeau
citation:
ama: 'Clozeau N. Optimal decay of the parabolic semigroup in stochastic homogenization
for correlated coefficient fields. Stochastics and Partial Differential Equations:
Analysis and Computations. 2023;11:1254–1378. doi:10.1007/s40072-022-00254-w'
apa: 'Clozeau, N. (2023). Optimal decay of the parabolic semigroup in stochastic
homogenization for correlated coefficient fields. Stochastics and Partial
Differential Equations: Analysis and Computations. Springer Nature. https://doi.org/10.1007/s40072-022-00254-w'
chicago: 'Clozeau, Nicolas. “Optimal Decay of the Parabolic Semigroup in Stochastic
Homogenization for Correlated Coefficient Fields.” Stochastics and Partial
Differential Equations: Analysis and Computations. Springer Nature, 2023.
https://doi.org/10.1007/s40072-022-00254-w.'
ieee: 'N. Clozeau, “Optimal decay of the parabolic semigroup in stochastic homogenization
for correlated coefficient fields,” Stochastics and Partial Differential Equations:
Analysis and Computations, vol. 11. Springer Nature, pp. 1254–1378, 2023.'
ista: 'Clozeau N. 2023. Optimal decay of the parabolic semigroup in stochastic homogenization
for correlated coefficient fields. Stochastics and Partial Differential Equations:
Analysis and Computations. 11, 1254–1378.'
mla: 'Clozeau, Nicolas. “Optimal Decay of the Parabolic Semigroup in Stochastic
Homogenization for Correlated Coefficient Fields.” Stochastics and Partial
Differential Equations: Analysis and Computations, vol. 11, Springer Nature,
2023, pp. 1254–1378, doi:10.1007/s40072-022-00254-w.'
short: 'N. Clozeau, Stochastics and Partial Differential Equations: Analysis and
Computations 11 (2023) 1254–1378.'
date_created: 2021-10-23T10:50:22Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2023-08-14T11:51:47Z
day: '01'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1007/s40072-022-00254-w
external_id:
arxiv:
- '2102.07452'
isi:
- '000799715600001'
file:
- access_level: open_access
checksum: f83dcaecdbd3ace862c4ed97a20e8501
content_type: application/pdf
creator: dernst
date_created: 2023-08-14T11:51:04Z
date_updated: 2023-08-14T11:51:04Z
file_id: '14052'
file_name: 2023_StochPartialDiffEquations_Clozeau.pdf
file_size: 1635193
relation: main_file
success: 1
file_date_updated: 2023-08-14T11:51:04Z
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 1254–1378
publication: 'Stochastics and Partial Differential Equations: Analysis and Computations'
publication_identifier:
issn:
- 2194-0401
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optimal decay of the parabolic semigroup in stochastic homogenization for
correlated coefficient fields
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2023'
...
---
_id: '10405'
abstract:
- lang: eng
text: 'We consider large non-Hermitian random matrices X with complex, independent,
identically distributed centred entries and show that the linear statistics of
their eigenvalues are asymptotically Gaussian for test functions having 2+ϵ derivatives.
Previously this result was known only for a few special cases; either the test
functions were required to be analytic [72], or the distribution of the matrix
elements needed to be Gaussian [73], or at least match the Gaussian up to the
first four moments [82, 56]. We find the exact dependence of the limiting variance
on the fourth cumulant that was not known before. The proof relies on two novel
ingredients: (i) a local law for a product of two resolvents of the Hermitisation
of X with different spectral parameters and (ii) a coupling of several weakly
dependent Dyson Brownian motions. These methods are also the key inputs for our
analogous results on the linear eigenvalue statistics of real matrices X that
are presented in the companion paper [32]. '
acknowledgement: L.E. would like to thank Nathanaël Berestycki and D.S.would like
to thank Nina Holden for valuable discussions on the Gaussian freefield.G.C. and
L.E. are partially supported by ERC Advanced Grant No. 338804.G.C. received funding
from the European Union’s Horizon 2020 research and in-novation programme under
the Marie Skłodowska-Curie Grant Agreement No.665385. D.S. is supported by Dr. Max
Rössler, the Walter Haefner Foundation, and the ETH Zürich Foundation.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Giorgio
full_name: Cipolloni, Giorgio
id: 42198EFA-F248-11E8-B48F-1D18A9856A87
last_name: Cipolloni
orcid: 0000-0002-4901-7992
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Dominik J
full_name: Schröder, Dominik J
id: 408ED176-F248-11E8-B48F-1D18A9856A87
last_name: Schröder
orcid: 0000-0002-2904-1856
citation:
ama: Cipolloni G, Erdös L, Schröder DJ. Central limit theorem for linear eigenvalue
statistics of non-Hermitian random matrices. Communications on Pure and Applied
Mathematics. 2023;76(5):946-1034. doi:10.1002/cpa.22028
apa: Cipolloni, G., Erdös, L., & Schröder, D. J. (2023). Central limit theorem
for linear eigenvalue statistics of non-Hermitian random matrices. Communications
on Pure and Applied Mathematics. Wiley. https://doi.org/10.1002/cpa.22028
chicago: Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Central Limit
Theorem for Linear Eigenvalue Statistics of Non-Hermitian Random Matrices.” Communications
on Pure and Applied Mathematics. Wiley, 2023. https://doi.org/10.1002/cpa.22028.
ieee: G. Cipolloni, L. Erdös, and D. J. Schröder, “Central limit theorem for linear
eigenvalue statistics of non-Hermitian random matrices,” Communications on
Pure and Applied Mathematics, vol. 76, no. 5. Wiley, pp. 946–1034, 2023.
ista: Cipolloni G, Erdös L, Schröder DJ. 2023. Central limit theorem for linear
eigenvalue statistics of non-Hermitian random matrices. Communications on Pure
and Applied Mathematics. 76(5), 946–1034.
mla: Cipolloni, Giorgio, et al. “Central Limit Theorem for Linear Eigenvalue Statistics
of Non-Hermitian Random Matrices.” Communications on Pure and Applied Mathematics,
vol. 76, no. 5, Wiley, 2023, pp. 946–1034, doi:10.1002/cpa.22028.
short: G. Cipolloni, L. Erdös, D.J. Schröder, Communications on Pure and Applied
Mathematics 76 (2023) 946–1034.
date_created: 2021-12-05T23:01:41Z
date_published: 2023-05-01T00:00:00Z
date_updated: 2023-10-04T09:22:55Z
day: '01'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1002/cpa.22028
ec_funded: 1
external_id:
arxiv:
- '1912.04100'
isi:
- '000724652500001'
file:
- access_level: open_access
checksum: 8346bc2642afb4ccb7f38979f41df5d9
content_type: application/pdf
creator: dernst
date_created: 2023-10-04T09:21:48Z
date_updated: 2023-10-04T09:21:48Z
file_id: '14388'
file_name: 2023_CommPureMathematics_Cipolloni.pdf
file_size: 803440
relation: main_file
success: 1
file_date_updated: 2023-10-04T09:21:48Z
has_accepted_license: '1'
intvolume: ' 76'
isi: 1
issue: '5'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '05'
oa: 1
oa_version: Published Version
page: 946-1034
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '338804'
name: Random matrices, universality and disordered quantum systems
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
publication: Communications on Pure and Applied Mathematics
publication_identifier:
eissn:
- 1097-0312
issn:
- 0010-3640
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Central limit theorem for linear eigenvalue statistics of non-Hermitian random
matrices
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 76
year: '2023'
...
---
_id: '10550'
abstract:
- lang: eng
text: The global existence of renormalised solutions and convergence to equilibrium
for reaction-diffusion systems with non-linear diffusion are investigated. The
system is assumed to have quasi-positive non-linearities and to satisfy an entropy
inequality. The difficulties in establishing global renormalised solutions caused
by possibly degenerate diffusion are overcome by introducing a new class of weighted
truncation functions. By means of the obtained global renormalised solutions,
we study the large-time behaviour of complex balanced systems arising from chemical
reaction network theory with non-linear diffusion. When the reaction network does
not admit boundary equilibria, the complex balanced equilibrium is shown, by using
the entropy method, to exponentially attract all renormalised solutions in the
same compatibility class. This convergence extends even to a range of non-linear
diffusion, where global existence is an open problem, yet we are able to show
that solutions to approximate systems converge exponentially to equilibrium uniformly
in the regularisation parameter.
acknowledgement: "We thank the referees for their valuable comments and suggestions.
A major part of this work was carried out when B. Q. Tang visited the Institute
of Science and Technology Austria (ISTA). The hospitality of ISTA is greatly acknowledged.
This work was partially supported by NAWI Graz.\r\nOpen access funding provided
by University of Graz."
article_number: '66'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Klemens
full_name: Fellner, Klemens
last_name: Fellner
- first_name: Julian L
full_name: Fischer, Julian L
id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
last_name: Fischer
orcid: 0000-0002-0479-558X
- first_name: Michael
full_name: Kniely, Michael
id: 2CA2C08C-F248-11E8-B48F-1D18A9856A87
last_name: Kniely
orcid: 0000-0001-5645-4333
- first_name: Bao Quoc
full_name: Tang, Bao Quoc
last_name: Tang
citation:
ama: Fellner K, Fischer JL, Kniely M, Tang BQ. Global renormalised solutions and
equilibration of reaction-diffusion systems with non-linear diffusion. Journal
of Nonlinear Science. 2023;33. doi:10.1007/s00332-023-09926-w
apa: Fellner, K., Fischer, J. L., Kniely, M., & Tang, B. Q. (2023). Global renormalised
solutions and equilibration of reaction-diffusion systems with non-linear diffusion.
Journal of Nonlinear Science. Springer Nature. https://doi.org/10.1007/s00332-023-09926-w
chicago: Fellner, Klemens, Julian L Fischer, Michael Kniely, and Bao Quoc Tang.
“Global Renormalised Solutions and Equilibration of Reaction-Diffusion Systems
with Non-Linear Diffusion.” Journal of Nonlinear Science. Springer Nature,
2023. https://doi.org/10.1007/s00332-023-09926-w.
ieee: K. Fellner, J. L. Fischer, M. Kniely, and B. Q. Tang, “Global renormalised
solutions and equilibration of reaction-diffusion systems with non-linear diffusion,”
Journal of Nonlinear Science, vol. 33. Springer Nature, 2023.
ista: Fellner K, Fischer JL, Kniely M, Tang BQ. 2023. Global renormalised solutions
and equilibration of reaction-diffusion systems with non-linear diffusion. Journal
of Nonlinear Science. 33, 66.
mla: Fellner, Klemens, et al. “Global Renormalised Solutions and Equilibration of
Reaction-Diffusion Systems with Non-Linear Diffusion.” Journal of Nonlinear
Science, vol. 33, 66, Springer Nature, 2023, doi:10.1007/s00332-023-09926-w.
short: K. Fellner, J.L. Fischer, M. Kniely, B.Q. Tang, Journal of Nonlinear Science
33 (2023).
date_created: 2021-12-16T12:15:35Z
date_published: 2023-06-07T00:00:00Z
date_updated: 2023-08-01T14:40:33Z
day: '07'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1007/s00332-023-09926-w
external_id:
arxiv:
- '2109.12019'
isi:
- '001002343400002'
file:
- access_level: open_access
checksum: f3f0f0886098e31c81116cff8183750b
content_type: application/pdf
creator: dernst
date_created: 2023-06-19T07:33:53Z
date_updated: 2023-06-19T07:33:53Z
file_id: '13149'
file_name: 2023_JourNonlinearScience_Fellner.pdf
file_size: 742315
relation: main_file
success: 1
file_date_updated: 2023-06-19T07:33:53Z
has_accepted_license: '1'
intvolume: ' 33'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Journal of Nonlinear Science
publication_identifier:
eissn:
- 1432-1467
issn:
- 0938-8974
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Global renormalised solutions and equilibration of reaction-diffusion systems
with non-linear diffusion
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 33
year: '2023'
...
---
_id: '10551'
abstract:
- lang: eng
text: 'The Dean–Kawasaki equation—a strongly singular SPDE—is a basic equation of
fluctuating hydrodynamics; it has been proposed in the physics literature to describe
the fluctuations of the density of N independent diffusing particles in the regime
of large particle numbers N≫1. The singular nature of the Dean–Kawasaki equation
presents a substantial challenge for both its analysis and its rigorous mathematical
justification. Besides being non-renormalisable by the theory of regularity structures
by Hairer et al., it has recently been shown to not even admit nontrivial martingale
solutions. In the present work, we give a rigorous and fully quantitative justification
of the Dean–Kawasaki equation by considering the natural regularisation provided
by standard numerical discretisations: We show that structure-preserving discretisations
of the Dean–Kawasaki equation may approximate the density fluctuations of N non-interacting
diffusing particles to arbitrary order in N−1 (in suitable weak metrics). In
other words, the Dean–Kawasaki equation may be interpreted as a “recipe” for accurate
and efficient numerical simulations of the density fluctuations of independent
diffusing particles.'
acknowledgement: "We thank the anonymous referee for his/her careful reading of the
manuscript and valuable suggestions. FC gratefully acknowledges funding from the
Austrian Science Fund (FWF) through the project F65, and from the European Union’s
Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
Grant Agreement No. 754411.\r\nOpen access funding provided by Austrian Science
Fund (FWF)."
article_number: '76'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Federico
full_name: Cornalba, Federico
id: 2CEB641C-A400-11E9-A717-D712E6697425
last_name: Cornalba
orcid: 0000-0002-6269-5149
- first_name: Julian L
full_name: Fischer, Julian L
id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
last_name: Fischer
orcid: 0000-0002-0479-558X
citation:
ama: Cornalba F, Fischer JL. The Dean-Kawasaki equation and the structure of density
fluctuations in systems of diffusing particles. Archive for Rational Mechanics
and Analysis. 2023;247(5). doi:10.1007/s00205-023-01903-7
apa: Cornalba, F., & Fischer, J. L. (2023). The Dean-Kawasaki equation and the
structure of density fluctuations in systems of diffusing particles. Archive
for Rational Mechanics and Analysis. Springer Nature. https://doi.org/10.1007/s00205-023-01903-7
chicago: Cornalba, Federico, and Julian L Fischer. “The Dean-Kawasaki Equation and
the Structure of Density Fluctuations in Systems of Diffusing Particles.” Archive
for Rational Mechanics and Analysis. Springer Nature, 2023. https://doi.org/10.1007/s00205-023-01903-7.
ieee: F. Cornalba and J. L. Fischer, “The Dean-Kawasaki equation and the structure
of density fluctuations in systems of diffusing particles,” Archive for Rational
Mechanics and Analysis, vol. 247, no. 5. Springer Nature, 2023.
ista: Cornalba F, Fischer JL. 2023. The Dean-Kawasaki equation and the structure
of density fluctuations in systems of diffusing particles. Archive for Rational
Mechanics and Analysis. 247(5), 76.
mla: Cornalba, Federico, and Julian L. Fischer. “The Dean-Kawasaki Equation and
the Structure of Density Fluctuations in Systems of Diffusing Particles.” Archive
for Rational Mechanics and Analysis, vol. 247, no. 5, 76, Springer Nature,
2023, doi:10.1007/s00205-023-01903-7.
short: F. Cornalba, J.L. Fischer, Archive for Rational Mechanics and Analysis 247
(2023).
date_created: 2021-12-16T12:16:03Z
date_published: 2023-08-04T00:00:00Z
date_updated: 2024-01-30T12:10:10Z
day: '04'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1007/s00205-023-01903-7
ec_funded: 1
external_id:
arxiv:
- '2109.06500'
isi:
- '001043086800001'
file:
- access_level: open_access
checksum: 4529eeff170b6745a461d397ee611b5a
content_type: application/pdf
creator: dernst
date_created: 2024-01-30T12:09:34Z
date_updated: 2024-01-30T12:09:34Z
file_id: '14904'
file_name: 2023_ArchiveRationalMech_Cornalba.pdf
file_size: 1851185
relation: main_file
success: 1
file_date_updated: 2024-01-30T12:09:34Z
has_accepted_license: '1'
intvolume: ' 247'
isi: 1
issue: '5'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
grant_number: F6504
name: Taming Complexity in Partial Differential Systems
publication: Archive for Rational Mechanics and Analysis
publication_identifier:
eissn:
- 1432-0673
issn:
- 0003-9527
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Dean-Kawasaki equation and the structure of density fluctuations in systems
of diffusing particles
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 247
year: '2023'
...
---
_id: '10770'
abstract:
- lang: eng
text: Mathematical models often aim to describe a complicated mechanism in a cohesive
and simple manner. However, reaching perfect balance between being simple enough
or overly simplistic is a challenging task. Frequently, game-theoretic models
have an underlying assumption that players, whenever they choose to execute a
specific action, do so perfectly. In fact, it is rare that action execution perfectly
coincides with intentions of individuals, giving rise to behavioural mistakes.
The concept of incompetence of players was suggested to address this issue in
game-theoretic settings. Under the assumption of incompetence, players have non-zero
probabilities of executing a different strategy from the one they chose, leading
to stochastic outcomes of the interactions. In this article, we survey results
related to the concept of incompetence in classic as well as evolutionary game
theory and provide several new results. We also suggest future extensions of the
model and argue why it is important to take into account behavioural mistakes
when analysing interactions among players in both economic and biological settings.
acknowledgement: "The authors would like to acknowledge stimulating email discussions
with Dr Wayne Lobb of W.A. Lobb LLC on the topic of evolutionary games. We also
thank Dr Thomas Taimre for his input to the material in Sect. 3.\r\nThe authors
would like to acknowledge partial support from the Australian Research Council under
the Discovery grant DP180101602 and support by the European Union’s Horizon 2020
research and innovation program under the Marie Sklodowska-Curie Grant Agreement
#754411."
article_processing_charge: No
article_type: original
author:
- first_name: Thomas
full_name: Graham, Thomas
last_name: Graham
- first_name: Maria
full_name: Kleshnina, Maria
id: 4E21749C-F248-11E8-B48F-1D18A9856A87
last_name: Kleshnina
- first_name: Jerzy A.
full_name: Filar, Jerzy A.
last_name: Filar
citation:
ama: Graham T, Kleshnina M, Filar JA. Where do mistakes lead? A survey of games
with incompetent players. Dynamic Games and Applications. 2023;13:231-264.
doi:10.1007/s13235-022-00425-3
apa: Graham, T., Kleshnina, M., & Filar, J. A. (2023). Where do mistakes lead?
A survey of games with incompetent players. Dynamic Games and Applications.
Springer Nature. https://doi.org/10.1007/s13235-022-00425-3
chicago: Graham, Thomas, Maria Kleshnina, and Jerzy A. Filar. “Where Do Mistakes
Lead? A Survey of Games with Incompetent Players.” Dynamic Games and Applications.
Springer Nature, 2023. https://doi.org/10.1007/s13235-022-00425-3.
ieee: T. Graham, M. Kleshnina, and J. A. Filar, “Where do mistakes lead? A survey
of games with incompetent players,” Dynamic Games and Applications, vol.
13. Springer Nature, pp. 231–264, 2023.
ista: Graham T, Kleshnina M, Filar JA. 2023. Where do mistakes lead? A survey of
games with incompetent players. Dynamic Games and Applications. 13, 231–264.
mla: Graham, Thomas, et al. “Where Do Mistakes Lead? A Survey of Games with Incompetent
Players.” Dynamic Games and Applications, vol. 13, Springer Nature, 2023,
pp. 231–64, doi:10.1007/s13235-022-00425-3.
short: T. Graham, M. Kleshnina, J.A. Filar, Dynamic Games and Applications 13 (2023)
231–264.
date_created: 2022-02-20T23:01:32Z
date_published: 2023-03-01T00:00:00Z
date_updated: 2023-10-04T09:24:30Z
day: '01'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1007/s13235-022-00425-3
ec_funded: 1
external_id:
isi:
- '000753777100001'
file:
- access_level: open_access
checksum: cd53b07e96f9030ddb348f305e5b58c7
content_type: application/pdf
creator: dernst
date_created: 2022-02-21T08:54:17Z
date_updated: 2022-02-21T08:54:17Z
file_id: '10781'
file_name: 2022_DynamicGamesApplic_Graham.pdf
file_size: 1890512
relation: main_file
success: 1
file_date_updated: 2022-02-21T08:54:17Z
has_accepted_license: '1'
intvolume: ' 13'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 231-264
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Dynamic Games and Applications
publication_identifier:
eissn:
- 2153-0793
issn:
- 2153-0785
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Where do mistakes lead? A survey of games with incompetent players
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2023'
...
---
_id: '11434'
abstract:
- lang: eng
text: The Indian summer monsoon rainfall (ISMR) has been declining since the 1950s.
However, since 2002 it is reported to have revived. For these observed changes
in the ISMR, several explanations have been reported. Among these explanations,
however, the role of the eastern equatorial Indian Ocean (EEIO) is missing despite
being one of the warmest regions in the Indian Ocean, and monotonously warming.
A recent study reported that EEIO warming impacts the rainfall over northern India.
Here we report that warming in the EEIO weakens the low-level Indian summer monsoon
circulation and reduces ISMR. A warm EEIO drives easterly winds in the Indo–Pacific
sector as a Gill response. The warm EEIO also enhances nocturnal convection offshore
the western coast of Sumatra. The latent heating associated with the increased
convection augments the Gill response and the resultant circulation opposes the
monsoon low-level circulation and weakens the seasonal rainfall.
acknowledgement: This work was supported by the National Research Foundation of Korea
(NRF) grant funded by the Korea government (MSIT) (NRF-2018R1A5A1024958). Model
simulation and data transfer were supported by the National Supercomputing Center
with supercomputing resources including technical support (KSC-2019-CHA-0005), the
National Center for Meteorological Supercomputer of Korea Meteorological Administration,
and by the Korea Research Environment Open NETwork (KREONET), respectively. The
authors declare no conflicts of interest.
article_processing_charge: No
article_type: original
author:
- first_name: Bidyut B
full_name: Goswami, Bidyut B
id: 3a4ac09c-6d61-11ec-bf66-884cde66b64b
last_name: Goswami
citation:
ama: GOSWAMI BB. Role of the eastern equatorial Indian Ocean warming in the Indian
summer monsoon rainfall trend. Climate Dynamics. 2023;60:427-442. doi:10.1007/s00382-022-06337-7
apa: GOSWAMI, B. B. (2023). Role of the eastern equatorial Indian Ocean warming
in the Indian summer monsoon rainfall trend. Climate Dynamics. Springer
Nature. https://doi.org/10.1007/s00382-022-06337-7
chicago: GOSWAMI, BIDYUT B. “Role of the Eastern Equatorial Indian Ocean Warming
in the Indian Summer Monsoon Rainfall Trend.” Climate Dynamics. Springer
Nature, 2023. https://doi.org/10.1007/s00382-022-06337-7.
ieee: B. B. GOSWAMI, “Role of the eastern equatorial Indian Ocean warming in the
Indian summer monsoon rainfall trend,” Climate Dynamics, vol. 60. Springer
Nature, pp. 427–442, 2023.
ista: GOSWAMI BB. 2023. Role of the eastern equatorial Indian Ocean warming in the
Indian summer monsoon rainfall trend. Climate Dynamics. 60, 427–442.
mla: GOSWAMI, BIDYUT B. “Role of the Eastern Equatorial Indian Ocean Warming in
the Indian Summer Monsoon Rainfall Trend.” Climate Dynamics, vol. 60, Springer
Nature, 2023, pp. 427–42, doi:10.1007/s00382-022-06337-7.
short: B.B. GOSWAMI, Climate Dynamics 60 (2023) 427–442.
date_created: 2022-06-05T22:01:50Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2023-06-28T11:49:58Z
day: '01'
department:
- _id: CaMu
doi: 10.1007/s00382-022-06337-7
external_id:
isi:
- '000803119400002'
intvolume: ' 60'
isi: 1
language:
- iso: eng
month: '01'
oa_version: None
page: 427-442
publication: Climate Dynamics
publication_identifier:
eissn:
- 1432-0894
issn:
- 0930-7575
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- relation: erratum
url: ' https://doi.org/10.1007/s00382-022-06401-2'
scopus_import: '1'
status: public
title: Role of the eastern equatorial Indian Ocean warming in the Indian summer monsoon
rainfall trend
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 60
year: '2023'
...
---
_id: '11479'
abstract:
- lang: eng
text: Understanding population divergence that eventually leads to speciation is
essential for evolutionary biology. High species diversity in the sea was regarded
as a paradox when strict allopatry was considered necessary for most speciation
events because geographical barriers seemed largely absent in the sea, and many
marine species have high dispersal capacities. Combining genome-wide data with
demographic modelling to infer the demographic history of divergence has introduced
new ways to address this classical issue. These models assume an ancestral population
that splits into two subpopulations diverging according to different scenarios
that allow tests for periods of gene flow. Models can also test for heterogeneities
in population sizes and migration rates along the genome to account, respectively,
for background selection and selection against introgressed ancestry. To investigate
how barriers to gene flow arise in the sea, we compiled studies modelling the
demographic history of divergence in marine organisms and extracted preferred
demographic scenarios together with estimates of demographic parameters. These
studies show that geographical barriers to gene flow do exist in the sea but that
divergence can also occur without strict isolation. Heterogeneity of gene flow
was detected in most population pairs suggesting the predominance of semipermeable
barriers during divergence. We found a weak positive relationship between the
fraction of the genome experiencing reduced gene flow and levels of genome-wide
differentiation. Furthermore, we found that the upper bound of the ‘grey zone
of speciation’ for our dataset extended beyond that found before, implying that
gene flow between diverging taxa is possible at higher levels of divergence than
previously thought. Finally, we list recommendations for further strengthening
the use of demographic modelling in speciation research. These include a more
balanced representation of taxa, more consistent and comprehensive modelling,
clear reporting of results and simulation studies to rule out nonbiological explanations
for general results.
acknowledgement: 'We greatly thank all the corresponding authors of the studies that
were included in our synthesis for the sharing of additional data: Thomas Broquet,
Dmitry Filatov, Quentin Rougemont, Paolo Momigliano, Pierre-Alexandre Gagnaire,
Carlos Prada, Ahmed Souissi, Michael Møller Hansen, Sylvie Lapègue, Joseph Di Battista,
Michael Hellberg and Carlos Prada. RKB and ADJ were supported by the European Research
Council. MR was supported by the Swedish Research Council Vetenskapsrådet (grant
number 2021-05243; to MR) and Formas (grant number 2019-00882; to KJ and MR), and
by additional grants from the European Research Council (to RKB) and Vetenskapsrådet
(to KJ) through the Centre for Marine Evolutionary Biology (https://www.gu.se/en/cemeb-marine-evolutionary-biology).'
article_processing_charge: No
article_type: original
author:
- first_name: Aurélien
full_name: De Jode, Aurélien
last_name: De Jode
- first_name: Alan
full_name: Le Moan, Alan
last_name: Le Moan
- first_name: Kerstin
full_name: Johannesson, Kerstin
last_name: Johannesson
- first_name: Rui
full_name: Faria, Rui
last_name: Faria
- first_name: Sean
full_name: Stankowski, Sean
id: 43161670-5719-11EA-8025-FABC3DDC885E
last_name: Stankowski
- first_name: Anja M
full_name: Westram, Anja M
id: 3C147470-F248-11E8-B48F-1D18A9856A87
last_name: Westram
orcid: 0000-0003-1050-4969
- first_name: Roger K.
full_name: Butlin, Roger K.
last_name: Butlin
- first_name: Marina
full_name: Rafajlović, Marina
last_name: Rafajlović
- first_name: Christelle
full_name: Fraisse, Christelle
id: 32DF5794-F248-11E8-B48F-1D18A9856A87
last_name: Fraisse
orcid: 0000-0001-8441-5075
citation:
ama: De Jode A, Le Moan A, Johannesson K, et al. Ten years of demographic modelling
of divergence and speciation in the sea. Evolutionary Applications. 2023;16(2):542-559.
doi:10.1111/eva.13428
apa: De Jode, A., Le Moan, A., Johannesson, K., Faria, R., Stankowski, S., Westram,
A. M., … Fraisse, C. (2023). Ten years of demographic modelling of divergence
and speciation in the sea. Evolutionary Applications. Wiley. https://doi.org/10.1111/eva.13428
chicago: De Jode, Aurélien, Alan Le Moan, Kerstin Johannesson, Rui Faria, Sean Stankowski,
Anja M Westram, Roger K. Butlin, Marina Rafajlović, and Christelle Fraisse. “Ten
Years of Demographic Modelling of Divergence and Speciation in the Sea.” Evolutionary
Applications. Wiley, 2023. https://doi.org/10.1111/eva.13428.
ieee: A. De Jode et al., “Ten years of demographic modelling of divergence
and speciation in the sea,” Evolutionary Applications, vol. 16, no. 2.
Wiley, pp. 542–559, 2023.
ista: De Jode A, Le Moan A, Johannesson K, Faria R, Stankowski S, Westram AM, Butlin
RK, Rafajlović M, Fraisse C. 2023. Ten years of demographic modelling of divergence
and speciation in the sea. Evolutionary Applications. 16(2), 542–559.
mla: De Jode, Aurélien, et al. “Ten Years of Demographic Modelling of Divergence
and Speciation in the Sea.” Evolutionary Applications, vol. 16, no. 2,
Wiley, 2023, pp. 542–59, doi:10.1111/eva.13428.
short: A. De Jode, A. Le Moan, K. Johannesson, R. Faria, S. Stankowski, A.M. Westram,
R.K. Butlin, M. Rafajlović, C. Fraisse, Evolutionary Applications 16 (2023) 542–559.
date_created: 2022-07-03T22:01:33Z
date_published: 2023-02-01T00:00:00Z
date_updated: 2023-08-01T12:25:44Z
day: '01'
ddc:
- '576'
department:
- _id: NiBa
- _id: BeVi
doi: 10.1111/eva.13428
external_id:
isi:
- '000815663700001'
file:
- access_level: open_access
checksum: d4d6fa9ddf36643af994a6a757919afb
content_type: application/pdf
creator: dernst
date_created: 2023-02-27T07:10:17Z
date_updated: 2023-02-27T07:10:17Z
file_id: '12685'
file_name: 2023_EvolutionaryApplications_DeJode.pdf
file_size: 2269822
relation: main_file
success: 1
file_date_updated: 2023-02-27T07:10:17Z
has_accepted_license: '1'
intvolume: ' 16'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 542-559
publication: Evolutionary Applications
publication_identifier:
eissn:
- 1752-4571
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ten years of demographic modelling of divergence and speciation in the sea
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 16
year: '2023'
...
---
_id: '11706'
abstract:
- lang: eng
text: 'We say that (Formula presented.) if, in every edge coloring (Formula presented.),
we can find either a 1-colored copy of (Formula presented.) or a 2-colored copy
of (Formula presented.). The well-known states that the threshold for the property
(Formula presented.) is equal to (Formula presented.), where (Formula presented.)
is given by (Formula presented.) for any pair of graphs (Formula presented.) and
(Formula presented.) with (Formula presented.). In this article, we show the 0-statement
of the Kohayakawa–Kreuter conjecture for every pair of cycles and cliques. '
acknowledgement: "This work was started at the thematic program GRAPHS@IMPA (January–March
2018), in Rio de Janeiro. We thank IMPA and the organisers for the hospitality and
for providing a pleasant research environment. We thank Rob Morris for helpful discussions,
and the anonymous referees for their careful reading and many helpful suggestions.
Open Access funding enabled and organized by Projekt DEAL.\r\nA. Liebenau was supported
by an ARC DECRA Fellowship Grant DE170100789. L. Mattos was supported by CAPES and
by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's
Excellence Strategy – The Berlin Mathematics Research Center MATH+ (EXC-2046/1,
project ID: 390685689). W. Mendonça was supported by CAPES project 88882.332408/2010-01."
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Anita
full_name: Liebenau, Anita
last_name: Liebenau
- first_name: Letícia
full_name: Mattos, Letícia
last_name: Mattos
- first_name: Walner
full_name: Mendonca Dos Santos, Walner
id: 12c6bd4d-2cd0-11ec-a0da-e28f42f65ebd
last_name: Mendonca Dos Santos
- first_name: Jozef
full_name: Skokan, Jozef
last_name: Skokan
citation:
ama: Liebenau A, Mattos L, Mendonca dos Santos W, Skokan J. Asymmetric Ramsey properties
of random graphs involving cliques and cycles. Random Structures and Algorithms.
2023;62(4):1035-1055. doi:10.1002/rsa.21106
apa: Liebenau, A., Mattos, L., Mendonca dos Santos, W., & Skokan, J. (2023).
Asymmetric Ramsey properties of random graphs involving cliques and cycles. Random
Structures and Algorithms. Wiley. https://doi.org/10.1002/rsa.21106
chicago: Liebenau, Anita, Letícia Mattos, Walner Mendonca dos Santos, and Jozef
Skokan. “Asymmetric Ramsey Properties of Random Graphs Involving Cliques and Cycles.”
Random Structures and Algorithms. Wiley, 2023. https://doi.org/10.1002/rsa.21106.
ieee: A. Liebenau, L. Mattos, W. Mendonca dos Santos, and J. Skokan, “Asymmetric
Ramsey properties of random graphs involving cliques and cycles,” Random Structures
and Algorithms, vol. 62, no. 4. Wiley, pp. 1035–1055, 2023.
ista: Liebenau A, Mattos L, Mendonca dos Santos W, Skokan J. 2023. Asymmetric Ramsey
properties of random graphs involving cliques and cycles. Random Structures and
Algorithms. 62(4), 1035–1055.
mla: Liebenau, Anita, et al. “Asymmetric Ramsey Properties of Random Graphs Involving
Cliques and Cycles.” Random Structures and Algorithms, vol. 62, no. 4,
Wiley, 2023, pp. 1035–55, doi:10.1002/rsa.21106.
short: A. Liebenau, L. Mattos, W. Mendonca dos Santos, J. Skokan, Random Structures
and Algorithms 62 (2023) 1035–1055.
date_created: 2022-07-31T22:01:49Z
date_published: 2023-07-01T00:00:00Z
date_updated: 2023-10-04T09:38:45Z
day: '01'
ddc:
- '510'
department:
- _id: MaKw
doi: 10.1002/rsa.21106
external_id:
isi:
- '000828530400001'
file:
- access_level: open_access
checksum: 3a5969d0c512aef01c30f3dc81c6d59b
content_type: application/pdf
creator: dernst
date_created: 2023-10-04T09:37:26Z
date_updated: 2023-10-04T09:37:26Z
file_id: '14389'
file_name: 2023_RandomStructureAlgorithms_Liebenau.pdf
file_size: 1362334
relation: main_file
success: 1
file_date_updated: 2023-10-04T09:37:26Z
has_accepted_license: '1'
intvolume: ' 62'
isi: 1
issue: '4'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '07'
oa: 1
oa_version: Published Version
page: 1035-1055
publication: Random Structures and Algorithms
publication_identifier:
eissn:
- 1098-2418
issn:
- 1042-9832
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Asymmetric Ramsey properties of random graphs involving cliques and cycles
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 62
year: '2023'
...
---
_id: '11741'
abstract:
- lang: eng
text: Following E. Wigner’s original vision, we prove that sampling the eigenvalue
gaps within the bulk spectrum of a fixed (deformed) Wigner matrix H yields the
celebrated Wigner-Dyson-Mehta universal statistics with high probability. Similarly,
we prove universality for a monoparametric family of deformed Wigner matrices
H+xA with a deterministic Hermitian matrix A and a fixed Wigner matrix H, just
using the randomness of a single scalar real random variable x. Both results constitute
quenched versions of bulk universality that has so far only been proven in annealed
sense with respect to the probability space of the matrix ensemble.
acknowledgement: "The authors are indebted to Sourav Chatterjee for forwarding the
very inspiring question that Stephen Shenker originally addressed to him which initiated
the current paper. They are also grateful that the authors of [23] kindly shared
their preliminary numerical results in June 2021.\r\nOpen access funding provided
by Institute of Science and Technology (IST Austria)."
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Giorgio
full_name: Cipolloni, Giorgio
id: 42198EFA-F248-11E8-B48F-1D18A9856A87
last_name: Cipolloni
orcid: 0000-0002-4901-7992
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Dominik J
full_name: Schröder, Dominik J
id: 408ED176-F248-11E8-B48F-1D18A9856A87
last_name: Schröder
orcid: 0000-0002-2904-1856
citation:
ama: Cipolloni G, Erdös L, Schröder DJ. Quenched universality for deformed Wigner
matrices. Probability Theory and Related Fields. 2023;185:1183–1218. doi:10.1007/s00440-022-01156-7
apa: Cipolloni, G., Erdös, L., & Schröder, D. J. (2023). Quenched universality
for deformed Wigner matrices. Probability Theory and Related Fields. Springer
Nature. https://doi.org/10.1007/s00440-022-01156-7
chicago: Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Quenched Universality
for Deformed Wigner Matrices.” Probability Theory and Related Fields. Springer
Nature, 2023. https://doi.org/10.1007/s00440-022-01156-7.
ieee: G. Cipolloni, L. Erdös, and D. J. Schröder, “Quenched universality for deformed
Wigner matrices,” Probability Theory and Related Fields, vol. 185. Springer
Nature, pp. 1183–1218, 2023.
ista: Cipolloni G, Erdös L, Schröder DJ. 2023. Quenched universality for deformed
Wigner matrices. Probability Theory and Related Fields. 185, 1183–1218.
mla: Cipolloni, Giorgio, et al. “Quenched Universality for Deformed Wigner Matrices.”
Probability Theory and Related Fields, vol. 185, Springer Nature, 2023,
pp. 1183–1218, doi:10.1007/s00440-022-01156-7.
short: G. Cipolloni, L. Erdös, D.J. Schröder, Probability Theory and Related Fields
185 (2023) 1183–1218.
date_created: 2022-08-07T22:02:00Z
date_published: 2023-04-01T00:00:00Z
date_updated: 2023-08-14T12:48:09Z
day: '01'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1007/s00440-022-01156-7
external_id:
arxiv:
- '2106.10200'
isi:
- '000830344500001'
file:
- access_level: open_access
checksum: b9247827dae5544d1d19c37abe547abc
content_type: application/pdf
creator: dernst
date_created: 2023-08-14T12:47:32Z
date_updated: 2023-08-14T12:47:32Z
file_id: '14054'
file_name: 2023_ProbabilityTheory_Cipolloni.pdf
file_size: 782278
relation: main_file
success: 1
file_date_updated: 2023-08-14T12:47:32Z
has_accepted_license: '1'
intvolume: ' 185'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1183–1218
publication: Probability Theory and Related Fields
publication_identifier:
eissn:
- 1432-2064
issn:
- 0178-8051
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quenched universality for deformed Wigner matrices
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
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short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 185
year: '2023'
...
---
_id: '11999'
abstract:
- lang: eng
text: 'A simple drawing D(G) of a graph G is one where each pair of edges share
at most one point: either a common endpoint or a proper crossing. An edge e in
the complement of G can be inserted into D(G) if there exists a simple drawing
of G+e extending D(G). As a result of Levi’s Enlargement Lemma, if a drawing is
rectilinear (pseudolinear), that is, the edges can be extended into an arrangement
of lines (pseudolines), then any edge in the complement of G can be inserted.
In contrast, we show that it is NP-complete to decide whether one edge can be
inserted into a simple drawing. This remains true even if we assume that the drawing
is pseudocircular, that is, the edges can be extended to an arrangement of pseudocircles.
On the positive side, we show that, given an arrangement of pseudocircles A and
a pseudosegment σ, it can be decided in polynomial time whether there exists a
pseudocircle Φσ extending σ for which A∪{Φσ} is again an arrangement of pseudocircles.'
acknowledgement: 'This work was started during the 6th Austrian–Japanese–Mexican–Spanish
Workshop on Discrete Geometry in June 2019 in Austria. We thank all the participants
for the good atmosphere as well as discussions on the topic. Also, we thank Jan
Kynčl for sending us remarks on a preliminary version of this work and an anonymous
referee for further helpful comments.Alan Arroyo was funded by the Marie Skłodowska-Curie
grant agreement No 754411. Fabian Klute was partially supported by the Netherlands
Organisation for Scientific Research (NWO) under project no. 612.001.651 and by
the Austrian Science Fund (FWF): J-4510. Irene Parada and Birgit Vogtenhuber were
partially supported by the Austrian Science Fund (FWF): W1230 and within the collaborative
DACH project Arrangements and Drawings as FWF project I 3340-N35. Irene Parada was
also partially supported by the Independent Research Fund Denmark grant 2020-2023
(9131-00044B) Dynamic Network Analysis and by the Margarita Salas Fellowship funded
by the Ministry of Universities of Spain and the European Union (NextGenerationEU).
Tilo Wiedera was supported by the German Research Foundation (DFG) grant CH 897/2-2.'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Alan M
full_name: Arroyo Guevara, Alan M
id: 3207FDC6-F248-11E8-B48F-1D18A9856A87
last_name: Arroyo Guevara
orcid: 0000-0003-2401-8670
- first_name: Fabian
full_name: Klute, Fabian
last_name: Klute
- first_name: Irene
full_name: Parada, Irene
last_name: Parada
- first_name: Birgit
full_name: Vogtenhuber, Birgit
last_name: Vogtenhuber
- first_name: Raimund
full_name: Seidel, Raimund
last_name: Seidel
- first_name: Tilo
full_name: Wiedera, Tilo
last_name: Wiedera
citation:
ama: Arroyo Guevara AM, Klute F, Parada I, Vogtenhuber B, Seidel R, Wiedera T. Inserting
one edge into a simple drawing is hard. Discrete and Computational Geometry.
2023;69:745–770. doi:10.1007/s00454-022-00394-9
apa: Arroyo Guevara, A. M., Klute, F., Parada, I., Vogtenhuber, B., Seidel, R.,
& Wiedera, T. (2023). Inserting one edge into a simple drawing is hard. Discrete
and Computational Geometry. Springer Nature. https://doi.org/10.1007/s00454-022-00394-9
chicago: Arroyo Guevara, Alan M, Fabian Klute, Irene Parada, Birgit Vogtenhuber,
Raimund Seidel, and Tilo Wiedera. “Inserting One Edge into a Simple Drawing Is
Hard.” Discrete and Computational Geometry. Springer Nature, 2023. https://doi.org/10.1007/s00454-022-00394-9.
ieee: A. M. Arroyo Guevara, F. Klute, I. Parada, B. Vogtenhuber, R. Seidel, and
T. Wiedera, “Inserting one edge into a simple drawing is hard,” Discrete and
Computational Geometry, vol. 69. Springer Nature, pp. 745–770, 2023.
ista: Arroyo Guevara AM, Klute F, Parada I, Vogtenhuber B, Seidel R, Wiedera T.
2023. Inserting one edge into a simple drawing is hard. Discrete and Computational
Geometry. 69, 745–770.
mla: Arroyo Guevara, Alan M., et al. “Inserting One Edge into a Simple Drawing Is
Hard.” Discrete and Computational Geometry, vol. 69, Springer Nature, 2023,
pp. 745–770, doi:10.1007/s00454-022-00394-9.
short: A.M. Arroyo Guevara, F. Klute, I. Parada, B. Vogtenhuber, R. Seidel, T. Wiedera,
Discrete and Computational Geometry 69 (2023) 745–770.
date_created: 2022-08-28T22:02:01Z
date_published: 2023-04-01T00:00:00Z
date_updated: 2023-08-14T12:51:25Z
day: '01'
ddc:
- '510'
department:
- _id: UlWa
doi: 10.1007/s00454-022-00394-9
ec_funded: 1
external_id:
arxiv:
- '1909.07347'
isi:
- '000840292800001'
file:
- access_level: open_access
checksum: def7ae3b28d9fd6aec16450e40090302
content_type: application/pdf
creator: alisjak
date_created: 2022-08-29T11:23:15Z
date_updated: 2022-08-29T11:23:15Z
file_id: '12006'
file_name: 2022_DiscreteandComputionalGeometry_Arroyo.pdf
file_size: 1002218
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success: 1
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has_accepted_license: '1'
intvolume: ' 69'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 745–770
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Discrete and Computational Geometry
publication_identifier:
eissn:
- 1432-0444
issn:
- 0179-5376
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Inserting one edge into a simple drawing is hard
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 69
year: '2023'
...
---
_id: '12086'
abstract:
- lang: eng
text: We present a simple algorithm for computing higher-order Delaunay mosaics
that works in Euclidean spaces of any finite dimensions. The algorithm selects
the vertices of the order-k mosaic from incrementally constructed lower-order
mosaics and uses an algorithm for weighted first-order Delaunay mosaics as a black-box
to construct the order-k mosaic from its vertices. Beyond this black-box, the
algorithm uses only combinatorial operations, thus facilitating easy implementation.
We extend this algorithm to compute higher-order α-shapes and provide open-source
implementations. We present experimental results for properties of higher-order
Delaunay mosaics of random point sets.
acknowledgement: Open access funding provided by Austrian Science Fund (FWF). This
project has received funding from the European Research Council (ERC) under the
European Union’s Horizon 2020 research and innovation programme, Grant No. 788183,
from the Wittgenstein Prize, Austrian Science Fund (FWF), Grant No. Z 342-N31, and
from the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry
and Dynamics’, Austrian Science Fund (FWF), Grant No. I 02979-N35.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Georg F
full_name: Osang, Georg F
id: 464B40D6-F248-11E8-B48F-1D18A9856A87
last_name: Osang
citation:
ama: Edelsbrunner H, Osang GF. A simple algorithm for higher-order Delaunay mosaics
and alpha shapes. Algorithmica. 2023;85:277-295. doi:10.1007/s00453-022-01027-6
apa: Edelsbrunner, H., & Osang, G. F. (2023). A simple algorithm for higher-order
Delaunay mosaics and alpha shapes. Algorithmica. Springer Nature. https://doi.org/10.1007/s00453-022-01027-6
chicago: Edelsbrunner, Herbert, and Georg F Osang. “A Simple Algorithm for Higher-Order
Delaunay Mosaics and Alpha Shapes.” Algorithmica. Springer Nature, 2023.
https://doi.org/10.1007/s00453-022-01027-6.
ieee: H. Edelsbrunner and G. F. Osang, “A simple algorithm for higher-order Delaunay
mosaics and alpha shapes,” Algorithmica, vol. 85. Springer Nature, pp.
277–295, 2023.
ista: Edelsbrunner H, Osang GF. 2023. A simple algorithm for higher-order Delaunay
mosaics and alpha shapes. Algorithmica. 85, 277–295.
mla: Edelsbrunner, Herbert, and Georg F. Osang. “A Simple Algorithm for Higher-Order
Delaunay Mosaics and Alpha Shapes.” Algorithmica, vol. 85, Springer Nature,
2023, pp. 277–95, doi:10.1007/s00453-022-01027-6.
short: H. Edelsbrunner, G.F. Osang, Algorithmica 85 (2023) 277–295.
date_created: 2022-09-11T22:01:57Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2023-06-27T12:53:43Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s00453-022-01027-6
ec_funded: 1
external_id:
isi:
- '000846967100001'
file:
- access_level: open_access
checksum: 71685ca5121f4c837f40c3f8eb50c915
content_type: application/pdf
creator: dernst
date_created: 2023-01-20T10:02:48Z
date_updated: 2023-01-20T10:02:48Z
file_id: '12322'
file_name: 2023_Algorithmica_Edelsbrunner.pdf
file_size: 911017
relation: main_file
success: 1
file_date_updated: 2023-01-20T10:02:48Z
has_accepted_license: '1'
intvolume: ' 85'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 277-295
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '788183'
name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z00342
name: The Wittgenstein Prize
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I02979-N35
name: Persistence and stability of geometric complexes
publication: Algorithmica
publication_identifier:
eissn:
- 1432-0541
issn:
- 0178-4617
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A simple algorithm for higher-order Delaunay mosaics and alpha shapes
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2EBD1598-F248-11E8-B48F-1D18A9856A87
volume: 85
year: '2023'
...
---
_id: '12087'
abstract:
- lang: eng
text: Following up on the recent work on lower Ricci curvature bounds for quantum
systems, we introduce two noncommutative versions of curvature-dimension bounds
for symmetric quantum Markov semigroups over matrix algebras. Under suitable such
curvature-dimension conditions, we prove a family of dimension-dependent functional
inequalities, a version of the Bonnet–Myers theorem and concavity of entropy power
in the noncommutative setting. We also provide examples satisfying certain curvature-dimension
conditions, including Schur multipliers over matrix algebras, Herz–Schur multipliers
over group algebras and generalized depolarizing semigroups.
acknowledgement: H.Z. is supported by the European Union’s Horizon 2020 research and
innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411
and the Lise Meitner fellowship, Austrian Science Fund (FWF) M3337. M.W. acknowledges
support from the European Research Council (ERC) under the European Union’s Horizon
2020 research and innovation programme (Grant Agreement No. 716117) and from the
Austrian Science Fund (FWF) through grant number F65. Both authors would like to
thank Jan Maas for fruitful discussions and helpful comments. Open access funding
provided by Austrian Science Fund (FWF).
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Melchior
full_name: Wirth, Melchior
id: 88644358-0A0E-11EA-8FA5-49A33DDC885E
last_name: Wirth
orcid: 0000-0002-0519-4241
- first_name: Haonan
full_name: Zhang, Haonan
id: D8F41E38-9E66-11E9-A9E2-65C2E5697425
last_name: Zhang
citation:
ama: Wirth M, Zhang H. Curvature-dimension conditions for symmetric quantum Markov
semigroups. Annales Henri Poincare. 2023;24:717-750. doi:10.1007/s00023-022-01220-x
apa: Wirth, M., & Zhang, H. (2023). Curvature-dimension conditions for symmetric
quantum Markov semigroups. Annales Henri Poincare. Springer Nature. https://doi.org/10.1007/s00023-022-01220-x
chicago: Wirth, Melchior, and Haonan Zhang. “Curvature-Dimension Conditions for
Symmetric Quantum Markov Semigroups.” Annales Henri Poincare. Springer
Nature, 2023. https://doi.org/10.1007/s00023-022-01220-x.
ieee: M. Wirth and H. Zhang, “Curvature-dimension conditions for symmetric quantum
Markov semigroups,” Annales Henri Poincare, vol. 24. Springer Nature, pp.
717–750, 2023.
ista: Wirth M, Zhang H. 2023. Curvature-dimension conditions for symmetric quantum
Markov semigroups. Annales Henri Poincare. 24, 717–750.
mla: Wirth, Melchior, and Haonan Zhang. “Curvature-Dimension Conditions for Symmetric
Quantum Markov Semigroups.” Annales Henri Poincare, vol. 24, Springer Nature,
2023, pp. 717–50, doi:10.1007/s00023-022-01220-x.
short: M. Wirth, H. Zhang, Annales Henri Poincare 24 (2023) 717–750.
date_created: 2022-09-11T22:01:57Z
date_published: 2023-03-01T00:00:00Z
date_updated: 2023-08-14T11:39:28Z
day: '01'
ddc:
- '510'
department:
- _id: JaMa
doi: 10.1007/s00023-022-01220-x
ec_funded: 1
external_id:
arxiv:
- '2105.08303'
isi:
- '000837499800002'
file:
- access_level: open_access
checksum: 8c7b185eba5ccd92ef55c120f654222c
content_type: application/pdf
creator: dernst
date_created: 2023-08-14T11:38:28Z
date_updated: 2023-08-14T11:38:28Z
file_id: '14051'
file_name: 2023_AnnalesHenriPoincare_Wirth.pdf
file_size: 554871
relation: main_file
success: 1
file_date_updated: 2023-08-14T11:38:28Z
has_accepted_license: '1'
intvolume: ' 24'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 717-750
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: eb958bca-77a9-11ec-83b8-c565cb50d8d6
grant_number: M03337
name: Curvature-dimension in noncommutative analysis
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
grant_number: F6504
name: Taming Complexity in Partial Differential Systems
publication: Annales Henri Poincare
publication_identifier:
issn:
- 1424-0637
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Curvature-dimension conditions for symmetric quantum Markov semigroups
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2023'
...
---
_id: '12104'
abstract:
- lang: eng
text: We study ergodic decompositions of Dirichlet spaces under intertwining via
unitary order isomorphisms. We show that the ergodic decomposition of a quasi-regular
Dirichlet space is unique up to a unique isomorphism of the indexing space. Furthermore,
every unitary order isomorphism intertwining two quasi-regular Dirichlet spaces
is decomposable over their ergodic decompositions up to conjugation via an isomorphism
of the corresponding indexing spaces.
acknowledgement: Research supported by the Austrian Science Fund (FWF) grant F65 at
the Institute of Science and Technology Austria and by the European Research Council
(ERC) (Grant agreement No. 716117 awarded to Prof. Dr. Jan Maas). L.D.S. gratefully
acknowledges funding of his current position by the Austrian Science Fund (FWF)
through the ESPRIT Programme (Grant No. 208). M.W. gratefully acknowledges funding
of his current position by the Austrian Science Fund (FWF) through the ESPRIT Programme
(Grant No. 156).
article_number: '9'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Lorenzo
full_name: Dello Schiavo, Lorenzo
id: ECEBF480-9E4F-11EA-B557-B0823DDC885E
last_name: Dello Schiavo
orcid: 0000-0002-9881-6870
- first_name: Melchior
full_name: Wirth, Melchior
id: 88644358-0A0E-11EA-8FA5-49A33DDC885E
last_name: Wirth
orcid: 0000-0002-0519-4241
citation:
ama: Dello Schiavo L, Wirth M. Ergodic decompositions of Dirichlet forms under order
isomorphisms. Journal of Evolution Equations. 2023;23(1). doi:10.1007/s00028-022-00859-7
apa: Dello Schiavo, L., & Wirth, M. (2023). Ergodic decompositions of Dirichlet
forms under order isomorphisms. Journal of Evolution Equations. Springer
Nature. https://doi.org/10.1007/s00028-022-00859-7
chicago: Dello Schiavo, Lorenzo, and Melchior Wirth. “Ergodic Decompositions of
Dirichlet Forms under Order Isomorphisms.” Journal of Evolution Equations.
Springer Nature, 2023. https://doi.org/10.1007/s00028-022-00859-7.
ieee: L. Dello Schiavo and M. Wirth, “Ergodic decompositions of Dirichlet forms
under order isomorphisms,” Journal of Evolution Equations, vol. 23, no.
1. Springer Nature, 2023.
ista: Dello Schiavo L, Wirth M. 2023. Ergodic decompositions of Dirichlet forms
under order isomorphisms. Journal of Evolution Equations. 23(1), 9.
mla: Dello Schiavo, Lorenzo, and Melchior Wirth. “Ergodic Decompositions of Dirichlet
Forms under Order Isomorphisms.” Journal of Evolution Equations, vol. 23,
no. 1, 9, Springer Nature, 2023, doi:10.1007/s00028-022-00859-7.
short: L. Dello Schiavo, M. Wirth, Journal of Evolution Equations 23 (2023).
date_created: 2023-01-08T23:00:53Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2023-06-28T11:54:35Z
day: '01'
ddc:
- '510'
department:
- _id: JaMa
doi: 10.1007/s00028-022-00859-7
ec_funded: 1
external_id:
isi:
- '000906214600004'
file:
- access_level: open_access
checksum: 1f34f3e2cb521033de6154f274ea3a4e
content_type: application/pdf
creator: dernst
date_created: 2023-01-20T10:45:06Z
date_updated: 2023-01-20T10:45:06Z
file_id: '12325'
file_name: 2023_JourEvolutionEquations_DelloSchiavo.pdf
file_size: 422612
relation: main_file
success: 1
file_date_updated: 2023-01-20T10:45:06Z
has_accepted_license: '1'
intvolume: ' 23'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
grant_number: F6504
name: Taming Complexity in Partial Differential Systems
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
- _id: 34dbf174-11ca-11ed-8bc3-afe9d43d4b9c
grant_number: E208
name: Configuration Spaces over Non-Smooth Spaces
- _id: 34c6ea2d-11ca-11ed-8bc3-c04f3c502833
grant_number: ESP156_N
name: Gradient flow techniques for quantum Markov semigroups
publication: Journal of Evolution Equations
publication_identifier:
eissn:
- 1424-3202
issn:
- 1424-3199
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ergodic decompositions of Dirichlet forms under order isomorphisms
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2023'
...
---
_id: '12105'
abstract:
- lang: eng
text: Data-driven dimensionality reduction methods such as proper orthogonal decomposition
and dynamic mode decomposition have proven to be useful for exploring complex
phenomena within fluid dynamics and beyond. A well-known challenge for these techniques
is posed by the continuous symmetries, e.g. translations and rotations, of the
system under consideration, as drifts in the data dominate the modal expansions
without providing an insight into the dynamics of the problem. In the present
study, we address this issue for fluid flows in rectangular channels by formulating
a continuous symmetry reduction method that eliminates the translations in the
streamwise and spanwise directions simultaneously. We demonstrate our method by
computing the symmetry-reduced dynamic mode decomposition (SRDMD) of sliding windows
of data obtained from the transitional plane-Couette and turbulent plane-Poiseuille
flow simulations. In the former setting, SRDMD captures the dynamics in the vicinity
of the invariant solutions with translation symmetries, i.e. travelling waves
and relative periodic orbits, whereas in the latter, our calculations reveal episodes
of turbulent time evolution that can be approximated by a low-dimensional linear
expansion.
acknowledgement: "E.M. acknowledges funding from the ISTplus fellowship programme.
G.Y. and B.H. acknowledge\r\na grant from the Simons Foundation (662960, BH)."
article_number: A10
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Elena
full_name: Marensi, Elena
id: 0BE7553A-1004-11EA-B805-18983DDC885E
last_name: Marensi
- first_name: Gökhan
full_name: Yalniz, Gökhan
id: 66E74FA2-D8BF-11E9-8249-8DE2E5697425
last_name: Yalniz
orcid: 0000-0002-8490-9312
- first_name: Björn
full_name: Hof, Björn
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
- first_name: Nazmi B
full_name: Budanur, Nazmi B
id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
last_name: Budanur
orcid: 0000-0003-0423-5010
citation:
ama: Marensi E, Yalniz G, Hof B, Budanur NB. Symmetry-reduced dynamic mode decomposition
of near-wall turbulence. Journal of Fluid Mechanics. 2023;954. doi:10.1017/jfm.2022.1001
apa: Marensi, E., Yalniz, G., Hof, B., & Budanur, N. B. (2023). Symmetry-reduced
dynamic mode decomposition of near-wall turbulence. Journal of Fluid Mechanics.
Cambridge University Press. https://doi.org/10.1017/jfm.2022.1001
chicago: Marensi, Elena, Gökhan Yalniz, Björn Hof, and Nazmi B Budanur. “Symmetry-Reduced
Dynamic Mode Decomposition of near-Wall Turbulence.” Journal of Fluid Mechanics.
Cambridge University Press, 2023. https://doi.org/10.1017/jfm.2022.1001.
ieee: E. Marensi, G. Yalniz, B. Hof, and N. B. Budanur, “Symmetry-reduced dynamic
mode decomposition of near-wall turbulence,” Journal of Fluid Mechanics,
vol. 954. Cambridge University Press, 2023.
ista: Marensi E, Yalniz G, Hof B, Budanur NB. 2023. Symmetry-reduced dynamic mode
decomposition of near-wall turbulence. Journal of Fluid Mechanics. 954, A10.
mla: Marensi, Elena, et al. “Symmetry-Reduced Dynamic Mode Decomposition of near-Wall
Turbulence.” Journal of Fluid Mechanics, vol. 954, A10, Cambridge University
Press, 2023, doi:10.1017/jfm.2022.1001.
short: E. Marensi, G. Yalniz, B. Hof, N.B. Budanur, Journal of Fluid Mechanics 954
(2023).
date_created: 2023-01-08T23:00:53Z
date_published: 2023-01-10T00:00:00Z
date_updated: 2023-08-01T12:53:23Z
day: '10'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1017/jfm.2022.1001
external_id:
arxiv:
- '2101.07516'
isi:
- '000903336600001'
file:
- access_level: open_access
checksum: 9224f987caefe5dd85a70814d3cce65c
content_type: application/pdf
creator: dernst
date_created: 2023-02-02T12:34:54Z
date_updated: 2023-02-02T12:34:54Z
file_id: '12489'
file_name: 2023_JourFluidMechanics_Marensi.pdf
file_size: 1931647
relation: main_file
success: 1
file_date_updated: 2023-02-02T12:34:54Z
has_accepted_license: '1'
intvolume: ' 954'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 238598C6-32DE-11EA-91FC-C7463DDC885E
grant_number: '662960'
name: 'Revisiting the Turbulence Problem Using Statistical Mechanics: Experimental
Studies on Transitional and Turbulent Flows'
publication: Journal of Fluid Mechanics
publication_identifier:
eissn:
- 1469-7645
issn:
- 0022-1120
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Symmetry-reduced dynamic mode decomposition of near-wall turbulence
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 954
year: '2023'
...
---
_id: '12113'
abstract:
- lang: eng
text: The power factor of poly(3,4-ethylenedioxythiophene):poly(styrene sulfonate)
(PEDOT:PSS) film can be significantly improved by optimizing the oxidation level
of the film in oxidation and reduction processes. However, precise control over
the oxidation and reduction effects in PEDOT:PSS remains a challenge, which greatly
sacrifices both S and σ. Here, we propose a two-step post-treatment using a mixture
of ethylene glycol (EG) and Arginine (Arg) and sulfuric acid (H2SO4) in sequence
to engineer high-performance PEDOT:PSS thermoelectric films. The high-polarity
EG dopant removes the excess non-ionized PSS and induces benzenoid-to-quinoid
conformational change in the PEDOT:PSS films. In particular, basic amino acid
Arg tunes the oxidation level of PEDOT:PSS and prevents the films from over-oxidation
during H2SO4 post-treatment, leading to increased S. The following H2SO4 post-treatment
further induces highly orientated lamellar stacking microstructures to increase
σ, yielding a maximum power factor of 170.6 μW m−1 K−2 at 460 K. Moreover, a novel
trigonal-shape thermoelectric device is designed and assembled by the as-prepared
PEDOT:PSS films in order to harvest heat via a vertical temperature gradient.
An output power density of 33 μW cm−2 is generated at a temperature difference
of 40 K, showing the potential application for low-grade wearable electronic devices.
acknowledgement: Scientific Research Program Funded by Shaanxi Provincial Education
Department (Program No.22JY012), Natural Science Basic Research Program of Shaanxi
(Grant No.2022JZ-31), Young Talent fund of University Association for Science and
Technology in Shaanxi, China (Grant No.20210411), China Postdoctoral Science Foundation
(Grant No. 2021M692621), the Foundation of Shaanxi University of Science & Technology
(Grant No. 2017GBJ-03), Open Foundation of Key Laboratory of Auxiliary Chemistry
and Technology for Chemical Industry, Ministry of Education, Shaanxi University
of Science and Technology (Grant No. KFKT2022-15), and Open Foundation of Shaanxi
Collaborative Innovation Center of Industrial Auxiliary Chemistry and Technology,
Shaanxi University of Science and Technology (Grant No. KFKT2022-15).
article_number: '156101'
article_processing_charge: No
article_type: original
author:
- first_name: Li
full_name: Zhang, Li
last_name: Zhang
- first_name: Xingyu
full_name: Liu, Xingyu
last_name: Liu
- first_name: Ting
full_name: Wu, Ting
last_name: Wu
- first_name: Shengduo
full_name: Xu, Shengduo
id: 12ab8624-4c8a-11ec-9e11-e1ac2438f22f
last_name: Xu
- first_name: Guoquan
full_name: Suo, Guoquan
last_name: Suo
- first_name: Xiaohui
full_name: Ye, Xiaohui
last_name: Ye
- first_name: Xiaojiang
full_name: Hou, Xiaojiang
last_name: Hou
- first_name: Yanling
full_name: Yang, Yanling
last_name: Yang
- first_name: Qingfeng
full_name: Liu, Qingfeng
last_name: Liu
- first_name: Hongqiang
full_name: Wang, Hongqiang
last_name: Wang
citation:
ama: Zhang L, Liu X, Wu T, et al. Two-step post-treatment to deliver high performance
thermoelectric device with vertical temperature gradient. Applied Surface Science.
2023;613. doi:10.1016/j.apsusc.2022.156101
apa: Zhang, L., Liu, X., Wu, T., Xu, S., Suo, G., Ye, X., … Wang, H. (2023). Two-step
post-treatment to deliver high performance thermoelectric device with vertical
temperature gradient. Applied Surface Science. Elsevier. https://doi.org/10.1016/j.apsusc.2022.156101
chicago: Zhang, Li, Xingyu Liu, Ting Wu, Shengduo Xu, Guoquan Suo, Xiaohui Ye, Xiaojiang
Hou, Yanling Yang, Qingfeng Liu, and Hongqiang Wang. “Two-Step Post-Treatment
to Deliver High Performance Thermoelectric Device with Vertical Temperature Gradient.”
Applied Surface Science. Elsevier, 2023. https://doi.org/10.1016/j.apsusc.2022.156101.
ieee: L. Zhang et al., “Two-step post-treatment to deliver high performance
thermoelectric device with vertical temperature gradient,” Applied Surface
Science, vol. 613. Elsevier, 2023.
ista: Zhang L, Liu X, Wu T, Xu S, Suo G, Ye X, Hou X, Yang Y, Liu Q, Wang H. 2023.
Two-step post-treatment to deliver high performance thermoelectric device with
vertical temperature gradient. Applied Surface Science. 613, 156101.
mla: Zhang, Li, et al. “Two-Step Post-Treatment to Deliver High Performance Thermoelectric
Device with Vertical Temperature Gradient.” Applied Surface Science, vol.
613, 156101, Elsevier, 2023, doi:10.1016/j.apsusc.2022.156101.
short: L. Zhang, X. Liu, T. Wu, S. Xu, G. Suo, X. Ye, X. Hou, Y. Yang, Q. Liu, H.
Wang, Applied Surface Science 613 (2023).
date_created: 2023-01-12T11:55:02Z
date_published: 2023-03-15T00:00:00Z
date_updated: 2023-08-14T11:47:06Z
day: '15'
department:
- _id: MaIb
doi: 10.1016/j.apsusc.2022.156101
external_id:
isi:
- '000911497000001'
intvolume: ' 613'
isi: 1
keyword:
- Surfaces
- Coatings and Films
- Condensed Matter Physics
- Surfaces and Interfaces
- General Physics and Astronomy
- General Chemistry
language:
- iso: eng
month: '03'
oa_version: None
publication: Applied Surface Science
publication_identifier:
issn:
- 0169-4332
publication_status: epub_ahead
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Two-step post-treatment to deliver high performance thermoelectric device with
vertical temperature gradient
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 613
year: '2023'
...
---
_id: '12114'
abstract:
- lang: eng
text: 'Probing the dynamics of aromatic side chains provides important insights
into the behavior of a protein because flips of aromatic rings in a protein’s
hydrophobic core report on breathing motion involving a large part of the protein.
Inherently invisible to crystallography, aromatic motions have been primarily
studied by solution NMR. The question how packing of proteins in crystals affects
ring flips has, thus, remained largely unexplored. Here we apply magic-angle spinning
NMR, advanced phenylalanine 1H-13C/2H isotope labeling and MD simulation to a
protein in three different crystal packing environments to shed light onto possible
impact of packing on ring flips. The flips of the two Phe residues in ubiquitin,
both surface exposed, appear remarkably conserved in the different crystal forms,
even though the intermolecular packing is quite different: Phe4 flips on a ca.
10–20 ns time scale, and Phe45 are broadened in all crystals, presumably due to
µs motion. Our findings suggest that intramolecular influences are more important
for ring flips than intermolecular (packing) effects.'
acknowledgement: The NMR platform in Grenoble is part of the Grenoble Instruct-ERIC
center (ISBG; UAR 3518 CNRS-CEA-UGA-EMBL) within the Grenoble Partnership for Structural
Biology (PSB), supported by FRISBI (ANR-10-INBS-0005-02) and GRAL, financed within
the University Grenoble Alpes graduate school (Ecoles Universitaires de Recherche)
CBH-EUR-GS (ANR-17-EURE-0003). This work was supported by the European Research
Council (StG-2012-311318-ProtDyn2Function to P.S.) and used the platforms of the
Grenoble Instruct Center (ISBG; UMS 3518 CNRS-CEA-UJF-EMBL) with support from FRISBI
(ANR-10-INSB-05–02) and GRAL (ANR-10-LABX-49–01) within the Grenoble Partnership
for Structural Biology (PSB). We would like to thank Sergei Izmailov for developing
and maintaining the pyxmolpp2 library. N.R.S. acknowledges support from St. Petersburg
State University in a form of the grant 92425251 and the access to the MRR, MCT
and CAMR resource centers. P.S. thanks Malcolm Levitt for pointing out the fact
that “tensor asymmetry” is better called “tensor biaxiality”.
article_number: '100079'
article_processing_charge: No
article_type: original
author:
- first_name: Diego F.
full_name: Gauto, Diego F.
last_name: Gauto
- first_name: Olga O.
full_name: Lebedenko, Olga O.
last_name: Lebedenko
- first_name: Lea Marie
full_name: Becker, Lea Marie
id: 36336939-eb97-11eb-a6c2-c83f1214ca79
last_name: Becker
orcid: 0000-0002-6401-5151
- first_name: Isabel
full_name: Ayala, Isabel
last_name: Ayala
- first_name: Roman
full_name: Lichtenecker, Roman
last_name: Lichtenecker
- first_name: Nikolai R.
full_name: Skrynnikov, Nikolai R.
last_name: Skrynnikov
- first_name: Paul
full_name: Schanda, Paul
id: 7B541462-FAF6-11E9-A490-E8DFE5697425
last_name: Schanda
orcid: 0000-0002-9350-7606
citation:
ama: 'Gauto DF, Lebedenko OO, Becker LM, et al. Aromatic ring flips in differently
packed ubiquitin protein crystals from MAS NMR and MD. Journal of Structural
Biology: X. 2023;7. doi:10.1016/j.yjsbx.2022.100079'
apa: 'Gauto, D. F., Lebedenko, O. O., Becker, L. M., Ayala, I., Lichtenecker, R.,
Skrynnikov, N. R., & Schanda, P. (2023). Aromatic ring flips in differently
packed ubiquitin protein crystals from MAS NMR and MD. Journal of Structural
Biology: X. Elsevier. https://doi.org/10.1016/j.yjsbx.2022.100079'
chicago: 'Gauto, Diego F., Olga O. Lebedenko, Lea Marie Becker, Isabel Ayala, Roman
Lichtenecker, Nikolai R. Skrynnikov, and Paul Schanda. “Aromatic Ring Flips in
Differently Packed Ubiquitin Protein Crystals from MAS NMR and MD.” Journal
of Structural Biology: X. Elsevier, 2023. https://doi.org/10.1016/j.yjsbx.2022.100079.'
ieee: 'D. F. Gauto et al., “Aromatic ring flips in differently packed ubiquitin
protein crystals from MAS NMR and MD,” Journal of Structural Biology: X,
vol. 7. Elsevier, 2023.'
ista: 'Gauto DF, Lebedenko OO, Becker LM, Ayala I, Lichtenecker R, Skrynnikov NR,
Schanda P. 2023. Aromatic ring flips in differently packed ubiquitin protein crystals
from MAS NMR and MD. Journal of Structural Biology: X. 7, 100079.'
mla: 'Gauto, Diego F., et al. “Aromatic Ring Flips in Differently Packed Ubiquitin
Protein Crystals from MAS NMR and MD.” Journal of Structural Biology: X,
vol. 7, 100079, Elsevier, 2023, doi:10.1016/j.yjsbx.2022.100079.'
short: 'D.F. Gauto, O.O. Lebedenko, L.M. Becker, I. Ayala, R. Lichtenecker, N.R.
Skrynnikov, P. Schanda, Journal of Structural Biology: X 7 (2023).'
date_created: 2023-01-12T11:55:38Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2023-08-16T09:37:25Z
day: '01'
ddc:
- '570'
department:
- _id: PaSc
doi: 10.1016/j.yjsbx.2022.100079
external_id:
pmid:
- '36578472'
file:
- access_level: open_access
checksum: b4b1c10a31018aafe053b7d55a470e54
content_type: application/pdf
creator: dernst
date_created: 2023-08-16T09:36:28Z
date_updated: 2023-08-16T09:36:28Z
file_id: '14064'
file_name: 2023_JourStrucBiologyX_Gauto.pdf
file_size: 5132322
relation: main_file
success: 1
file_date_updated: 2023-08-16T09:36:28Z
has_accepted_license: '1'
intvolume: ' 7'
keyword:
- Structural Biology
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
publication: 'Journal of Structural Biology: X'
publication_identifier:
issn:
- 2590-1524
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Aromatic ring flips in differently packed ubiquitin protein crystals from MAS
NMR and MD
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2023'
...
---
_id: '12115'
acknowledgement: This work was supported by European Commission’s Seventh Framework
Programme under Grant Agreement No. 279113 (OCTIPS; www.octips.eu).
article_processing_charge: No
article_type: original
author:
- first_name: Jacek
full_name: Glajzer, Jacek
last_name: Glajzer
- first_name: Dan Cacsire
full_name: Castillo-Tong, Dan Cacsire
last_name: Castillo-Tong
- first_name: Rolf
full_name: Richter, Rolf
last_name: Richter
- first_name: Ignace
full_name: Vergote, Ignace
last_name: Vergote
- first_name: Hagen
full_name: Kulbe, Hagen
last_name: Kulbe
- first_name: Adriaan
full_name: Vanderstichele, Adriaan
last_name: Vanderstichele
- first_name: Ilary
full_name: Ruscito, Ilary
last_name: Ruscito
- first_name: Fabian
full_name: Trillsch, Fabian
last_name: Trillsch
- first_name: Alexander
full_name: Mustea, Alexander
last_name: Mustea
- first_name: Caroline
full_name: Kreuzinger, Caroline
id: 382077BA-F248-11E8-B48F-1D18A9856A87
last_name: Kreuzinger
- first_name: Charlie
full_name: Gourley, Charlie
last_name: Gourley
- first_name: Hani
full_name: Gabra, Hani
last_name: Gabra
- first_name: Eliane T.
full_name: Taube, Eliane T.
last_name: Taube
- first_name: Oliver
full_name: Dorigo, Oliver
last_name: Dorigo
- first_name: David
full_name: Horst, David
last_name: Horst
- first_name: Carlotta
full_name: Keunecke, Carlotta
last_name: Keunecke
- first_name: Joanna
full_name: Baum, Joanna
last_name: Baum
- first_name: Timothy
full_name: Angelotti, Timothy
last_name: Angelotti
- first_name: Jalid
full_name: Sehouli, Jalid
last_name: Sehouli
- first_name: Elena Ioana
full_name: Braicu, Elena Ioana
last_name: Braicu
citation:
ama: 'Glajzer J, Castillo-Tong DC, Richter R, et al. ASO Visual Abstract: Impact
of BRCA mutation status on tumor dissemination pattern, surgical outcome, and
patient survival in primary and recurrent high-grade serous ovarian cancer (HGSOC).
A multicenter, retrospective study of the ovarian cancer therapy—innovative models
prolong survival (OCTIPS) consortium. Annals of Surgical Oncology. 2023;30:46-47.
doi:10.1245/s10434-022-12681-z'
apa: 'Glajzer, J., Castillo-Tong, D. C., Richter, R., Vergote, I., Kulbe, H., Vanderstichele,
A., … Braicu, E. I. (2023). ASO Visual Abstract: Impact of BRCA mutation status
on tumor dissemination pattern, surgical outcome, and patient survival in primary
and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective
study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS)
consortium. Annals of Surgical Oncology. Springer Nature. https://doi.org/10.1245/s10434-022-12681-z'
chicago: 'Glajzer, Jacek, Dan Cacsire Castillo-Tong, Rolf Richter, Ignace Vergote,
Hagen Kulbe, Adriaan Vanderstichele, Ilary Ruscito, et al. “ASO Visual Abstract:
Impact of BRCA Mutation Status on Tumor Dissemination Pattern, Surgical Outcome,
and Patient Survival in Primary and Recurrent High-Grade Serous Ovarian Cancer
(HGSOC). A Multicenter, Retrospective Study of the Ovarian Cancer Therapy—Innovative
Models Prolong Survival (OCTIPS) Consortium.” Annals of Surgical Oncology.
Springer Nature, 2023. https://doi.org/10.1245/s10434-022-12681-z.'
ieee: 'J. Glajzer et al., “ASO Visual Abstract: Impact of BRCA mutation status
on tumor dissemination pattern, surgical outcome, and patient survival in primary
and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective
study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS)
consortium,” Annals of Surgical Oncology, vol. 30. Springer Nature, pp.
46–47, 2023.'
ista: 'Glajzer J, Castillo-Tong DC, Richter R, Vergote I, Kulbe H, Vanderstichele
A, Ruscito I, Trillsch F, Mustea A, Kreuzinger C, Gourley C, Gabra H, Taube ET,
Dorigo O, Horst D, Keunecke C, Baum J, Angelotti T, Sehouli J, Braicu EI. 2023.
ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination pattern,
surgical outcome, and patient survival in primary and recurrent high-grade serous
ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian cancer
therapy—innovative models prolong survival (OCTIPS) consortium. Annals of Surgical
Oncology. 30, 46–47.'
mla: 'Glajzer, Jacek, et al. “ASO Visual Abstract: Impact of BRCA Mutation Status
on Tumor Dissemination Pattern, Surgical Outcome, and Patient Survival in Primary
and Recurrent High-Grade Serous Ovarian Cancer (HGSOC). A Multicenter, Retrospective
Study of the Ovarian Cancer Therapy—Innovative Models Prolong Survival (OCTIPS)
Consortium.” Annals of Surgical Oncology, vol. 30, Springer Nature, 2023,
pp. 46–47, doi:10.1245/s10434-022-12681-z.'
short: J. Glajzer, D.C. Castillo-Tong, R. Richter, I. Vergote, H. Kulbe, A. Vanderstichele,
I. Ruscito, F. Trillsch, A. Mustea, C. Kreuzinger, C. Gourley, H. Gabra, E.T.
Taube, O. Dorigo, D. Horst, C. Keunecke, J. Baum, T. Angelotti, J. Sehouli, E.I.
Braicu, Annals of Surgical Oncology 30 (2023) 46–47.
date_created: 2023-01-12T11:56:22Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2023-09-05T15:18:36Z
day: '01'
department:
- _id: JoDa
doi: 10.1245/s10434-022-12681-z
external_id:
isi:
- '000879151800001'
intvolume: ' 30'
isi: 1
keyword:
- Oncology
- Surgery
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1245/s10434-022-12681-z
month: '01'
oa: 1
oa_version: Published Version
page: 46-47
publication: Annals of Surgical Oncology
publication_identifier:
eissn:
- 1534-4681
issn:
- 1068-9265
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '12205'
relation: other
status: public
scopus_import: '1'
status: public
title: 'ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination
pattern, surgical outcome, and patient survival in primary and recurrent high-grade
serous ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian
cancer therapy—innovative models prolong survival (OCTIPS) consortium'
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 30
year: '2023'
...
---
_id: '12159'
abstract:
- lang: eng
text: The term “haplotype block” is commonly used in the developing field of haplotype-based
inference methods. We argue that the term should be defined based on the structure
of the Ancestral Recombination Graph (ARG), which contains complete information
on the ancestry of a sample. We use simulated examples to demonstrate key features
of the relationship between haplotype blocks and ancestral structure, emphasizing
the stochasticity of the processes that generate them. Even the simplest cases
of neutrality or of a “hard” selective sweep produce a rich structure, often missed
by commonly used statistics. We highlight a number of novel methods for inferring
haplotype structure, based on the full ARG, or on a sequence of trees, and illustrate
how they can be used to define haplotype blocks using an empirical data set. While
the advent of new, computationally efficient methods makes it possible to apply
these concepts broadly, they (and additional new methods) could benefit from adding
features to explore haplotype blocks, as we define them. Understanding and applying
the concept of the haplotype block will be essential to fully exploit long and
linked-read sequencing technologies.
acknowledgement: 'We thank the Barton group for useful discussion and feedback during
the writing of this article. Comments from Roger Butlin, Molly Schumer''s Group,
the tskit development team, editors and three reviewers greatly improved the manuscript.
Funding was provided by SCAS (Natural Sciences Programme, Knut and Alice Wallenberg
Foundation), an FWF Wittgenstein grant (PT1001Z211), an FWF standalone grant (grant
P 32166), and an ERC Advanced Grant. YFC was supported by the Max Planck Society
and an ERC Proof of Concept Grant #101069216 (HAPLOTAGGING).'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Daria
full_name: Shipilina, Daria
id: 428A94B0-F248-11E8-B48F-1D18A9856A87
last_name: Shipilina
orcid: 0000-0002-1145-9226
- first_name: Arka
full_name: Pal, Arka
id: 6AAB2240-CA9A-11E9-9C1A-D9D1E5697425
last_name: Pal
orcid: 0000-0002-4530-8469
- first_name: Sean
full_name: Stankowski, Sean
id: 43161670-5719-11EA-8025-FABC3DDC885E
last_name: Stankowski
- first_name: Yingguang Frank
full_name: Chan, Yingguang Frank
last_name: Chan
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
citation:
ama: Shipilina D, Pal A, Stankowski S, Chan YF, Barton NH. On the origin and structure
of haplotype blocks. Molecular Ecology. 2023;32(6):1441-1457. doi:10.1111/mec.16793
apa: Shipilina, D., Pal, A., Stankowski, S., Chan, Y. F., & Barton, N. H. (2023).
On the origin and structure of haplotype blocks. Molecular Ecology. Wiley.
https://doi.org/10.1111/mec.16793
chicago: Shipilina, Daria, Arka Pal, Sean Stankowski, Yingguang Frank Chan, and
Nicholas H Barton. “On the Origin and Structure of Haplotype Blocks.” Molecular
Ecology. Wiley, 2023. https://doi.org/10.1111/mec.16793.
ieee: D. Shipilina, A. Pal, S. Stankowski, Y. F. Chan, and N. H. Barton, “On the
origin and structure of haplotype blocks,” Molecular Ecology, vol. 32,
no. 6. Wiley, pp. 1441–1457, 2023.
ista: Shipilina D, Pal A, Stankowski S, Chan YF, Barton NH. 2023. On the origin
and structure of haplotype blocks. Molecular Ecology. 32(6), 1441–1457.
mla: Shipilina, Daria, et al. “On the Origin and Structure of Haplotype Blocks.”
Molecular Ecology, vol. 32, no. 6, Wiley, 2023, pp. 1441–57, doi:10.1111/mec.16793.
short: D. Shipilina, A. Pal, S. Stankowski, Y.F. Chan, N.H. Barton, Molecular Ecology
32 (2023) 1441–1457.
date_created: 2023-01-12T12:09:17Z
date_published: 2023-03-01T00:00:00Z
date_updated: 2023-08-16T08:18:47Z
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keyword:
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- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
month: '03'
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oa_version: Published Version
page: 1441-1457
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grant_number: P32166
name: The maintenance of alternative adaptive peaks in snapdragons
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call_identifier: FWF
grant_number: Z211
name: The Wittgenstein Prize
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grant_number: '101055327'
name: Understanding the evolution of continuous genomes
publication: Molecular Ecology
publication_identifier:
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issn:
- 0962-1083
publication_status: published
publisher: Wiley
quality_controlled: '1'
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status: public
title: On the origin and structure of haplotype blocks
tmp:
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legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
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type: journal_article
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...
---
_id: '12162'
abstract:
- lang: eng
text: Homeostatic balance in the intestinal epithelium relies on a fast cellular
turnover, which is coordinated by an intricate interplay between biochemical signalling,
mechanical forces and organ geometry. We review recent modelling approaches that
have been developed to understand different facets of this remarkable homeostatic
equilibrium. Existing models offer different, albeit complementary, perspectives
on the problem. First, biomechanical models aim to explain the local and global
mechanical stresses driving cell renewal as well as tissue shape maintenance.
Second, compartmental models provide insights into the conditions necessary to
keep a constant flow of cells with well-defined ratios of cell types, and how
perturbations can lead to an unbalance of relative compartment sizes. A third
family of models address, at the cellular level, the nature and regulation of
stem fate choices that are necessary to fuel cellular turnover. We also review
how these different approaches are starting to be integrated together across scales,
to provide quantitative predictions and new conceptual frameworks to think about
the dynamics of cell renewal in complex tissues.
acknowledgement: "This work received funding from the ERC under the European Union’s
Horizon 2020 research and innovation programme (grant agreement No. 851288 to E.H.).\r\nB.
C-M wants to acknowledge the support of the field of excellence Complexity of Life,
in Basic Research and Innovation of the University of Graz."
article_processing_charge: Yes (via OA deal)
article_type: review
author:
- first_name: Bernat
full_name: Corominas-Murtra, Bernat
id: 43BE2298-F248-11E8-B48F-1D18A9856A87
last_name: Corominas-Murtra
orcid: 0000-0001-9806-5643
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
citation:
ama: Corominas-Murtra B, Hannezo EB. Modelling the dynamics of mammalian gut homeostasis.
Seminars in Cell & Developmental Biology. 2023;150-151:58-65. doi:10.1016/j.semcdb.2022.11.005
apa: Corominas-Murtra, B., & Hannezo, E. B. (2023). Modelling the dynamics of
mammalian gut homeostasis. Seminars in Cell & Developmental Biology.
Elsevier. https://doi.org/10.1016/j.semcdb.2022.11.005
chicago: Corominas-Murtra, Bernat, and Edouard B Hannezo. “Modelling the Dynamics
of Mammalian Gut Homeostasis.” Seminars in Cell & Developmental Biology.
Elsevier, 2023. https://doi.org/10.1016/j.semcdb.2022.11.005.
ieee: B. Corominas-Murtra and E. B. Hannezo, “Modelling the dynamics of mammalian
gut homeostasis,” Seminars in Cell & Developmental Biology, vol. 150–151.
Elsevier, pp. 58–65, 2023.
ista: Corominas-Murtra B, Hannezo EB. 2023. Modelling the dynamics of mammalian
gut homeostasis. Seminars in Cell & Developmental Biology. 150–151, 58–65.
mla: Corominas-Murtra, Bernat, and Edouard B. Hannezo. “Modelling the Dynamics of
Mammalian Gut Homeostasis.” Seminars in Cell & Developmental Biology,
vol. 150–151, Elsevier, 2023, pp. 58–65, doi:10.1016/j.semcdb.2022.11.005.
short: B. Corominas-Murtra, E.B. Hannezo, Seminars in Cell & Developmental Biology
150–151 (2023) 58–65.
date_created: 2023-01-12T12:09:47Z
date_published: 2023-12-02T00:00:00Z
date_updated: 2024-01-16T13:22:32Z
day: '02'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.1016/j.semcdb.2022.11.005
ec_funded: 1
external_id:
isi:
- '001053522200001'
pmid:
- '36470715'
file:
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checksum: c619887cf130f4649bf3035417186004
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creator: dernst
date_created: 2024-01-08T10:16:04Z
date_updated: 2024-01-08T10:16:04Z
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file_name: 2023_SeminarsCellDevBiology_CorominasMurtra.pdf
file_size: 1343750
relation: main_file
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file_date_updated: 2024-01-08T10:16:04Z
has_accepted_license: '1'
isi: 1
keyword:
- Cell Biology
- Developmental Biology
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 58-65
pmid: 1
project:
- _id: 05943252-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '851288'
name: Design Principles of Branching Morphogenesis
publication: Seminars in Cell & Developmental Biology
publication_identifier:
issn:
- 1084-9521
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modelling the dynamics of mammalian gut homeostasis
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 150-151
year: '2023'
...