---
_id: '2052'
abstract:
- lang: eng
  text: A standard technique for solving the parameterized model checking problem
    is to reduce it to the classic model checking problem of finitely many finite-state
    systems. This work considers some of the theoretical power and limitations of
    this technique. We focus on concurrent systems in which processes communicate
    via pairwise rendezvous, as well as the special cases of disjunctive guards and
    token passing; specifications are expressed in indexed temporal logic without
    the next operator; and the underlying network topologies are generated by suitable
    Monadic Second Order Logic formulas and graph operations. First, we settle the
    exact computational complexity of the parameterized model checking problem for
    some of our concurrent systems, and establish new decidability results for others.
    Second, we consider the cases that model checking the parameterized system can
    be reduced to model checking some fixed number of processes, the number is known
    as a cutoff. We provide many cases for when such cutoffs can be computed, establish
    lower bounds on the size of such cutoffs, and identify cases where no cutoff exists.
    Third, we consider cases for which the parameterized system is equivalent to a
    single finite-state system (more precisely a Büchi word automaton), and establish
    tight bounds on the sizes of such automata.
acknowledgement: The second, third, fourth and fifth authors were supported by the
  Austrian National Research Network S11403-N23 (RiSE) of the Austrian Science Fund
  (FWF) and by the Vienna Science and Technology Fund (WWTF) through grants PROSEED,
  ICT12-059, and VRG11-005.
alternative_title:
- LNCS
author:
- first_name: Benjamin
  full_name: Aminof, Benjamin
  id: 4A55BD00-F248-11E8-B48F-1D18A9856A87
  last_name: Aminof
- first_name: Tomer
  full_name: Kotek, Tomer
  last_name: Kotek
- first_name: Sacha
  full_name: Rubin, Sacha
  last_name: Rubin
- first_name: Francesco
  full_name: Spegni, Francesco
  last_name: Spegni
- first_name: Helmut
  full_name: Veith, Helmut
  last_name: Veith
citation:
  ama: 'Aminof B, Kotek T, Rubin S, Spegni F, Veith H. Parameterized model checking
    of rendezvous systems. In: Baldan P, Gorla D, eds. <i>Lecture Notes in Computer
    Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture
    Notes in Bioinformatics)</i>. Vol 8704. Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik; 2014:109-124. doi:<a href="https://doi.org/10.1007/978-3-662-44584-6_9">10.1007/978-3-662-44584-6_9</a>'
  apa: 'Aminof, B., Kotek, T., Rubin, S., Spegni, F., &#38; Veith, H. (2014). Parameterized
    model checking of rendezvous systems. In P. Baldan &#38; D. Gorla (Eds.), <i>Lecture
    Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence
    and Lecture Notes in Bioinformatics)</i> (Vol. 8704, pp. 109–124). Rome, Italy:
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.1007/978-3-662-44584-6_9">https://doi.org/10.1007/978-3-662-44584-6_9</a>'
  chicago: Aminof, Benjamin, Tomer Kotek, Sacha Rubin, Francesco Spegni, and Helmut
    Veith. “Parameterized Model Checking of Rendezvous Systems.” In <i>Lecture Notes
    in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence
    and Lecture Notes in Bioinformatics)</i>, edited by Paolo Baldan and Daniele Gorla,
    8704:109–24. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2014. <a href="https://doi.org/10.1007/978-3-662-44584-6_9">https://doi.org/10.1007/978-3-662-44584-6_9</a>.
  ieee: B. Aminof, T. Kotek, S. Rubin, F. Spegni, and H. Veith, “Parameterized model
    checking of rendezvous systems,” in <i>Lecture Notes in Computer Science (including
    subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>,
    Rome, Italy, 2014, vol. 8704, pp. 109–124.
  ista: 'Aminof B, Kotek T, Rubin S, Spegni F, Veith H. 2014. Parameterized model
    checking of rendezvous systems. Lecture Notes in Computer Science (including subseries
    Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).
    CONCUR: Concurrency Theory, LNCS, vol. 8704, 109–124.'
  mla: Aminof, Benjamin, et al. “Parameterized Model Checking of Rendezvous Systems.”
    <i>Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial
    Intelligence and Lecture Notes in Bioinformatics)</i>, edited by Paolo Baldan
    and Daniele Gorla, vol. 8704, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2014, pp. 109–24, doi:<a href="https://doi.org/10.1007/978-3-662-44584-6_9">10.1007/978-3-662-44584-6_9</a>.
  short: B. Aminof, T. Kotek, S. Rubin, F. Spegni, H. Veith, in:, P. Baldan, D. Gorla
    (Eds.), Lecture Notes in Computer Science (Including Subseries Lecture Notes in
    Artificial Intelligence and Lecture Notes in Bioinformatics), Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik, 2014, pp. 109–124.
conference:
  end_date: 2014-09-05
  location: Rome, Italy
  name: 'CONCUR: Concurrency Theory'
  start_date: 2014-09-02
date_created: 2018-12-11T11:55:26Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2021-01-12T06:54:59Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/978-3-662-44584-6_9
editor:
- first_name: Paolo
  full_name: Baldan, Paolo
  last_name: Baldan
- first_name: Daniele
  full_name: Gorla, Daniele
  last_name: Gorla
intvolume: '      8704'
language:
- iso: eng
month: '09'
oa_version: None
page: 109 - 124
publication: Lecture Notes in Computer Science (including subseries Lecture Notes
  in Artificial Intelligence and Lecture Notes in Bioinformatics)
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '4994'
quality_controlled: '1'
status: public
title: Parameterized model checking of rendezvous systems
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 8704
year: '2014'
...
---
_id: '2053'
abstract:
- lang: eng
  text: In contrast to the usual understanding of probabilistic systems as stochastic
    processes, recently these systems have also been regarded as transformers of probabilities.
    In this paper, we give a natural definition of strong bisimulation for probabilistic
    systems corresponding to this view that treats probability distributions as first-class
    citizens. Our definition applies in the same way to discrete systems as well as
    to systems with uncountable state and action spaces. Several examples demonstrate
    that our definition refines the understanding of behavioural equivalences of probabilistic
    systems. In particular, it solves a longstanding open problem concerning the representation
    of memoryless continuous time by memoryfull continuous time. Finally, we give
    algorithms for computing this bisimulation not only for finite but also for classes
    of uncountably infinite systems.
acknowledgement: This work is supported by the EU 7th Framework Programme under grant
  agreements 295261 (MEALS) and 318490 (SENSATION), Czech Science Foundation under
  grant agreement P202/12/G061, the DFG Transregional Collaborative Research Centre
  SFB/TR 14 AVACS, and by the CAS/SAFEA International Partnership Program for Creative
  Research Teams.
alternative_title:
- LNCS
author:
- first_name: Holger
  full_name: Hermanns, Holger
  last_name: Hermanns
- first_name: Jan
  full_name: Krčál, Jan
  last_name: Krčál
- first_name: Jan
  full_name: Kretinsky, Jan
  id: 44CEF464-F248-11E8-B48F-1D18A9856A87
  last_name: Kretinsky
  orcid: 0000-0002-8122-2881
citation:
  ama: 'Hermanns H, Krčál J, Kretinsky J. Probabilistic bisimulation: Naturally on
    distributions. In: Baldan P, Gorla D, eds. <i>Lecture Notes in Computer Science
    (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes
    in Bioinformatics)</i>. Vol 8704. Schloss Dagstuhl - Leibniz-Zentrum für Informatik;
    2014:249-265. doi:<a href="https://doi.org/10.1007/978-3-662-44584-6_18">10.1007/978-3-662-44584-6_18</a>'
  apa: 'Hermanns, H., Krčál, J., &#38; Kretinsky, J. (2014). Probabilistic bisimulation:
    Naturally on distributions. In P. Baldan &#38; D. Gorla (Eds.), <i>Lecture Notes
    in Computer Science (including subseries Lecture Notes in Artificial Intelligence
    and Lecture Notes in Bioinformatics)</i> (Vol. 8704, pp. 249–265). Rome, Italy:
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.1007/978-3-662-44584-6_18">https://doi.org/10.1007/978-3-662-44584-6_18</a>'
  chicago: 'Hermanns, Holger, Jan Krčál, and Jan Kretinsky. “Probabilistic Bisimulation:
    Naturally on Distributions.” In <i>Lecture Notes in Computer Science (Including
    Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>,
    edited by Paolo Baldan and Daniele Gorla, 8704:249–65. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2014. <a href="https://doi.org/10.1007/978-3-662-44584-6_18">https://doi.org/10.1007/978-3-662-44584-6_18</a>.'
  ieee: 'H. Hermanns, J. Krčál, and J. Kretinsky, “Probabilistic bisimulation: Naturally
    on distributions,” in <i>Lecture Notes in Computer Science (including subseries
    Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>,
    Rome, Italy, 2014, vol. 8704, pp. 249–265.'
  ista: 'Hermanns H, Krčál J, Kretinsky J. 2014. Probabilistic bisimulation: Naturally
    on distributions. Lecture Notes in Computer Science (including subseries Lecture
    Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). CONCUR:
    Concurrency Theory, LNCS, vol. 8704, 249–265.'
  mla: 'Hermanns, Holger, et al. “Probabilistic Bisimulation: Naturally on Distributions.”
    <i>Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial
    Intelligence and Lecture Notes in Bioinformatics)</i>, edited by Paolo Baldan
    and Daniele Gorla, vol. 8704, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2014, pp. 249–65, doi:<a href="https://doi.org/10.1007/978-3-662-44584-6_18">10.1007/978-3-662-44584-6_18</a>.'
  short: H. Hermanns, J. Krčál, J. Kretinsky, in:, P. Baldan, D. Gorla (Eds.), Lecture
    Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence
    and Lecture Notes in Bioinformatics), Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2014, pp. 249–265.
conference:
  end_date: 2014-09-05
  location: Rome, Italy
  name: 'CONCUR: Concurrency Theory'
  start_date: 2014-09-02
date_created: 2018-12-11T11:55:27Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2021-01-12T06:55:00Z
day: '01'
department:
- _id: ToHe
- _id: KrCh
doi: 10.1007/978-3-662-44584-6_18
ec_funded: 1
editor:
- first_name: Paolo
  full_name: Baldan, Paolo
  last_name: Baldan
- first_name: Daniele
  full_name: Gorla, Daniele
  last_name: Gorla
intvolume: '      8704'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1404.5084
month: '09'
oa: 1
oa_version: Submitted Version
page: 249 - 265
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25F5A88A-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11402-N23
  name: Moderne Concurrency Paradigms
publication: Lecture Notes in Computer Science (including subseries Lecture Notes
  in Artificial Intelligence and Lecture Notes in Bioinformatics)
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '4993'
status: public
title: 'Probabilistic bisimulation: Naturally on distributions'
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 8704
year: '2014'
...
---
_id: '2054'
abstract:
- lang: eng
  text: 'We study two-player concurrent games on finite-state graphs played for an
    infinite number of rounds, where in each round, the two players (player 1 and
    player 2) choose their moves independently and simultaneously; the current state
    and the two moves determine the successor state. The objectives are ω-regular
    winning conditions specified as parity objectives. We consider the qualitative
    analysis problems: the computation of the almost-sure and limit-sure winning set
    of states, where player 1 can ensure to win with probability 1 and with probability
    arbitrarily close to 1, respectively. In general the almost-sure and limit-sure
    winning strategies require both infinite-memory as well as infinite-precision
    (to describe probabilities). While the qualitative analysis problem for concurrent
    parity games with infinite-memory, infinite-precision randomized strategies was
    studied before, we study the bounded-rationality problem for qualitative analysis
    of concurrent parity games, where the strategy set for player 1 is restricted
    to bounded-resource strategies. In terms of precision, strategies can be deterministic,
    uniform, finite-precision, or infinite-precision; and in terms of memory, strategies
    can be memoryless, finite-memory, or infinite-memory. We present a precise and
    complete characterization of the qualitative winning sets for all combinations
    of classes of strategies. In particular, we show that uniform memoryless strategies
    are as powerful as finite-precision infinite-memory strategies, and infinite-precision
    memoryless strategies are as powerful as infinite-precision finite-memory strategies.
    We show that the winning sets can be computed in (n2d+3) time, where n is the
    size of the game structure and 2d is the number of priorities (or colors), and
    our algorithms are symbolic. The membership problem of whether a state belongs
    to a winning set can be decided in NP ∩ coNP. Our symbolic algorithms are based
    on a characterization of the winning sets as μ-calculus formulas, however, our
    μ-calculus formulas are crucially different from the ones for concurrent parity
    games (without bounded rationality); and our memoryless witness strategy constructions
    are significantly different from the infinite-memory witness strategy constructions
    for concurrent parity games.'
alternative_title:
- LNCS
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
citation:
  ama: 'Chatterjee K. Qualitative concurrent parity games: Bounded rationality. In:
    Baldan P, Gorla D, eds. <i>Lecture Notes in Computer Science (Including Subseries
    Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>.
    Vol 8704. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2014:544-559. doi:<a
    href="https://doi.org/10.1007/978-3-662-44584-6_37">10.1007/978-3-662-44584-6_37</a>'
  apa: 'Chatterjee, K. (2014). Qualitative concurrent parity games: Bounded rationality.
    In P. Baldan &#38; D. Gorla (Eds.), <i>Lecture Notes in Computer Science (including
    subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>
    (Vol. 8704, pp. 544–559). Rome, Italy: Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik. <a href="https://doi.org/10.1007/978-3-662-44584-6_37">https://doi.org/10.1007/978-3-662-44584-6_37</a>'
  chicago: 'Chatterjee, Krishnendu. “Qualitative Concurrent Parity Games: Bounded
    Rationality.” In <i>Lecture Notes in Computer Science (Including Subseries Lecture
    Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>, edited
    by Paolo Baldan and Daniele Gorla, 8704:544–59. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2014. <a href="https://doi.org/10.1007/978-3-662-44584-6_37">https://doi.org/10.1007/978-3-662-44584-6_37</a>.'
  ieee: 'K. Chatterjee, “Qualitative concurrent parity games: Bounded rationality,”
    in <i>Lecture Notes in Computer Science (including subseries Lecture Notes in
    Artificial Intelligence and Lecture Notes in Bioinformatics)</i>, Rome, Italy,
    2014, vol. 8704, pp. 544–559.'
  ista: 'Chatterjee K. 2014. Qualitative concurrent parity games: Bounded rationality.
    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial
    Intelligence and Lecture Notes in Bioinformatics). CONCUR: Concurrency Theory,
    LNCS, vol. 8704, 544–559.'
  mla: 'Chatterjee, Krishnendu. “Qualitative Concurrent Parity Games: Bounded Rationality.”
    <i>Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial
    Intelligence and Lecture Notes in Bioinformatics)</i>, edited by Paolo Baldan
    and Daniele Gorla, vol. 8704, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2014, pp. 544–59, doi:<a href="https://doi.org/10.1007/978-3-662-44584-6_37">10.1007/978-3-662-44584-6_37</a>.'
  short: K. Chatterjee, in:, P. Baldan, D. Gorla (Eds.), Lecture Notes in Computer
    Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture
    Notes in Bioinformatics), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2014,
    pp. 544–559.
conference:
  end_date: 2014-09-05
  location: Rome, Italy
  name: 'CONCUR: Concurrency Theory'
  start_date: 2014-09-02
date_created: 2018-12-11T11:55:27Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2023-02-23T11:23:36Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/978-3-662-44584-6_37
ec_funded: 1
editor:
- first_name: Paolo
  full_name: Baldan, Paolo
  last_name: Baldan
- first_name: Daniele
  full_name: Gorla, Daniele
  last_name: Gorla
intvolume: '      8704'
language:
- iso: eng
month: '09'
oa_version: None
page: 544 - 559
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: Lecture Notes in Computer Science (including subseries Lecture Notes
  in Artificial Intelligence and Lecture Notes in Bioinformatics)
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '4992'
quality_controlled: '1'
related_material:
  record:
  - id: '3354'
    relation: earlier_version
    status: public
status: public
title: 'Qualitative concurrent parity games: Bounded rationality'
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 8704
year: '2014'
...
---
_id: '2056'
abstract:
- lang: eng
  text: 'We consider a continuous-time Markov chain (CTMC) whose state space is partitioned
    into aggregates, and each aggregate is assigned a probability measure. A sufficient
    condition for defining a CTMC over the aggregates is presented as a variant of
    weak lumpability, which also characterizes that the measure over the original
    process can be recovered from that of the aggregated one. We show how the applicability
    of de-aggregation depends on the initial distribution. The application section
    is devoted to illustrate how the developed theory aids in reducing CTMC models
    of biochemical systems particularly in connection to protein-protein interactions.
    We assume that the model is written by a biologist in form of site-graph-rewrite
    rules. Site-graph-rewrite rules compactly express that, often, only a local context
    of a protein (instead of a full molecular species) needs to be in a certain configuration
    in order to trigger a reaction event. This observation leads to suitable aggregate
    Markov chains with smaller state spaces, thereby providing sufficient reduction
    in computational complexity. This is further exemplified in two case studies:
    simple unbounded polymerization and early EGFR/insulin crosstalk.'
acknowledgement: T. Petrov is supported by SystemsX.ch—the Swiss Inititative for Systems
  Biology.
author:
- first_name: Arnab
  full_name: Ganguly, Arnab
  last_name: Ganguly
- first_name: Tatjana
  full_name: Petrov, Tatjana
  id: 3D5811FC-F248-11E8-B48F-1D18A9856A87
  last_name: Petrov
  orcid: 0000-0002-9041-0905
- first_name: Heinz
  full_name: Koeppl, Heinz
  last_name: Koeppl
citation:
  ama: Ganguly A, Petrov T, Koeppl H. Markov chain aggregation and its applications
    to combinatorial reaction networks. <i>Journal of Mathematical Biology</i>. 2014;69(3):767-797.
    doi:<a href="https://doi.org/10.1007/s00285-013-0738-7">10.1007/s00285-013-0738-7</a>
  apa: Ganguly, A., Petrov, T., &#38; Koeppl, H. (2014). Markov chain aggregation
    and its applications to combinatorial reaction networks. <i>Journal of Mathematical
    Biology</i>. Springer. <a href="https://doi.org/10.1007/s00285-013-0738-7">https://doi.org/10.1007/s00285-013-0738-7</a>
  chicago: Ganguly, Arnab, Tatjana Petrov, and Heinz Koeppl. “Markov Chain Aggregation
    and Its Applications to Combinatorial Reaction Networks.” <i>Journal of Mathematical
    Biology</i>. Springer, 2014. <a href="https://doi.org/10.1007/s00285-013-0738-7">https://doi.org/10.1007/s00285-013-0738-7</a>.
  ieee: A. Ganguly, T. Petrov, and H. Koeppl, “Markov chain aggregation and its applications
    to combinatorial reaction networks,” <i>Journal of Mathematical Biology</i>, vol.
    69, no. 3. Springer, pp. 767–797, 2014.
  ista: Ganguly A, Petrov T, Koeppl H. 2014. Markov chain aggregation and its applications
    to combinatorial reaction networks. Journal of Mathematical Biology. 69(3), 767–797.
  mla: Ganguly, Arnab, et al. “Markov Chain Aggregation and Its Applications to Combinatorial
    Reaction Networks.” <i>Journal of Mathematical Biology</i>, vol. 69, no. 3, Springer,
    2014, pp. 767–97, doi:<a href="https://doi.org/10.1007/s00285-013-0738-7">10.1007/s00285-013-0738-7</a>.
  short: A. Ganguly, T. Petrov, H. Koeppl, Journal of Mathematical Biology 69 (2014)
    767–797.
date_created: 2018-12-11T11:55:28Z
date_published: 2014-11-20T00:00:00Z
date_updated: 2021-01-12T06:55:01Z
day: '20'
department:
- _id: CaGu
- _id: ToHe
doi: 10.1007/s00285-013-0738-7
intvolume: '        69'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1303.4532
month: '11'
oa: 1
oa_version: Submitted Version
page: 767 - 797
publication: Journal of Mathematical Biology
publication_status: published
publisher: Springer
publist_id: '4990'
quality_controlled: '1'
scopus_import: 1
status: public
title: Markov chain aggregation and its applications to combinatorial reaction networks
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 69
year: '2014'
...
---
_id: '2057'
abstract:
- lang: eng
  text: 'In the past few years, a lot of attention has been devoted to multimedia
    indexing by fusing multimodal informations. Two kinds of fusion schemes are generally
    considered: The early fusion and the late fusion. We focus on late classifier
    fusion, where one combines the scores of each modality at the decision level.
    To tackle this problem, we investigate a recent and elegant well-founded quadratic
    program named MinCq coming from the machine learning PAC-Bayesian theory. MinCq
    looks for the weighted combination, over a set of real-valued functions seen as
    voters, leading to the lowest misclassification rate, while maximizing the voters’
    diversity. We propose an extension of MinCq tailored to multimedia indexing. Our
    method is based on an order-preserving pairwise loss adapted to ranking that allows
    us to improve Mean Averaged Precision measure while taking into account the diversity
    of the voters that we want to fuse. We provide evidence that this method is naturally
    adapted to late fusion procedures and confirm the good behavior of our approach
    on the challenging PASCAL VOC’07 benchmark.'
alternative_title:
- LNCS
arxiv: 1
author:
- first_name: Emilie
  full_name: Morvant, Emilie
  id: 4BAC2A72-F248-11E8-B48F-1D18A9856A87
  last_name: Morvant
  orcid: 0000-0002-8301-7240
- first_name: Amaury
  full_name: Habrard, Amaury
  last_name: Habrard
- first_name: Stéphane
  full_name: Ayache, Stéphane
  last_name: Ayache
citation:
  ama: 'Morvant E, Habrard A, Ayache S. Majority vote of diverse classifiers for late
    fusion. In: <i>Lecture Notes in Computer Science (Including Subseries Lecture
    Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>. Vol
    8621. Springer; 2014:153-162. doi:<a href="https://doi.org/10.1007/978-3-662-44415-3_16">10.1007/978-3-662-44415-3_16</a>'
  apa: 'Morvant, E., Habrard, A., &#38; Ayache, S. (2014). Majority vote of diverse
    classifiers for late fusion. In <i>Lecture Notes in Computer Science (including
    subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>
    (Vol. 8621, pp. 153–162). Joensuu, Finland: Springer. <a href="https://doi.org/10.1007/978-3-662-44415-3_16">https://doi.org/10.1007/978-3-662-44415-3_16</a>'
  chicago: Morvant, Emilie, Amaury Habrard, and Stéphane Ayache. “Majority Vote of
    Diverse Classifiers for Late Fusion.” In <i>Lecture Notes in Computer Science
    (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes
    in Bioinformatics)</i>, 8621:153–62. Springer, 2014. <a href="https://doi.org/10.1007/978-3-662-44415-3_16">https://doi.org/10.1007/978-3-662-44415-3_16</a>.
  ieee: E. Morvant, A. Habrard, and S. Ayache, “Majority vote of diverse classifiers
    for late fusion,” in <i>Lecture Notes in Computer Science (including subseries
    Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>,
    Joensuu, Finland, 2014, vol. 8621, pp. 153–162.
  ista: 'Morvant E, Habrard A, Ayache S. 2014. Majority vote of diverse classifiers
    for late fusion. Lecture Notes in Computer Science (including subseries Lecture
    Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). IAPR: International
    Workshop on Structural, Syntactic, and Statistical Pattern Recognition, LNCS,
    vol. 8621, 153–162.'
  mla: Morvant, Emilie, et al. “Majority Vote of Diverse Classifiers for Late Fusion.”
    <i>Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial
    Intelligence and Lecture Notes in Bioinformatics)</i>, vol. 8621, Springer, 2014,
    pp. 153–62, doi:<a href="https://doi.org/10.1007/978-3-662-44415-3_16">10.1007/978-3-662-44415-3_16</a>.
  short: E. Morvant, A. Habrard, S. Ayache, in:, Lecture Notes in Computer Science
    (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes
    in Bioinformatics), Springer, 2014, pp. 153–162.
conference:
  end_date: 2014-08-22
  location: Joensuu, Finland
  name: 'IAPR: International Workshop on Structural, Syntactic, and Statistical Pattern
    Recognition'
  start_date: 2014-08-20
date_created: 2018-12-11T11:55:28Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2021-01-12T06:55:01Z
day: '01'
department:
- _id: ChLa
doi: 10.1007/978-3-662-44415-3_16
ec_funded: 1
external_id:
  arxiv:
  - '1404.7796'
intvolume: '      8621'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1404.7796
month: '01'
oa: 1
oa_version: Preprint
page: 153 - 162
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '308036'
  name: Lifelong Learning of Visual Scene Understanding
publication: Lecture Notes in Computer Science (including subseries Lecture Notes
  in Artificial Intelligence and Lecture Notes in Bioinformatics)
publication_status: published
publisher: Springer
publist_id: '4989'
quality_controlled: '1'
scopus_import: 1
status: public
title: Majority vote of diverse classifiers for late fusion
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8621
year: '2014'
...
---
_id: '2058'
abstract:
- lang: eng
  text: We present a method for smoothly blending between existing liquid animations.
    We introduce a semi-automatic method for matching two existing liquid animations,
    which we use to create new fluid motion that plausibly interpolates the input.
    Our contributions include a new space-time non-rigid iterative closest point algorithm
    that incorporates user guidance, a subsampling technique for efficient registration
    of meshes with millions of vertices, and a fast surface extraction algorithm that
    produces 3D triangle meshes from a 4D space-time surface. Our technique can be
    used to instantly create hundreds of new simulations, or to interactively explore
    complex parameter spaces. Our method is guaranteed to produce output that does
    not deviate from the input animations, and it generalizes to multiple dimensions.
    Because our method runs at interactive rates after the initial precomputation
    step, it has potential applications in games and training simulations.
article_number: '137'
article_processing_charge: No
author:
- first_name: Karthik
  full_name: Raveendran, Karthik
  last_name: Raveendran
- first_name: Christopher J
  full_name: Wojtan, Christopher J
  id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
  last_name: Wojtan
  orcid: 0000-0001-6646-5546
- first_name: Nils
  full_name: Thuerey, Nils
  last_name: Thuerey
- first_name: Greg
  full_name: Türk, Greg
  last_name: Türk
citation:
  ama: 'Raveendran K, Wojtan C, Thuerey N, Türk G. Blending liquids. In: <i>ACM Transactions
    on Graphics</i>. Vol 33. ACM; 2014. doi:<a href="https://doi.org/10.1145/2601097.2601126">10.1145/2601097.2601126</a>'
  apa: 'Raveendran, K., Wojtan, C., Thuerey, N., &#38; Türk, G. (2014). Blending liquids.
    In <i>ACM Transactions on Graphics</i> (Vol. 33). Vancouver, Canada: ACM. <a href="https://doi.org/10.1145/2601097.2601126">https://doi.org/10.1145/2601097.2601126</a>'
  chicago: Raveendran, Karthik, Chris Wojtan, Nils Thuerey, and Greg Türk. “Blending
    Liquids.” In <i>ACM Transactions on Graphics</i>, Vol. 33. ACM, 2014. <a href="https://doi.org/10.1145/2601097.2601126">https://doi.org/10.1145/2601097.2601126</a>.
  ieee: K. Raveendran, C. Wojtan, N. Thuerey, and G. Türk, “Blending liquids,” in
    <i>ACM Transactions on Graphics</i>, Vancouver, Canada, 2014, vol. 33, no. 4.
  ista: 'Raveendran K, Wojtan C, Thuerey N, Türk G. 2014. Blending liquids. ACM Transactions
    on Graphics. SIGGRAPH: International Conference and Exhibition on Computer Graphics
    and Interactive Techniques vol. 33, 137.'
  mla: Raveendran, Karthik, et al. “Blending Liquids.” <i>ACM Transactions on Graphics</i>,
    vol. 33, no. 4, 137, ACM, 2014, doi:<a href="https://doi.org/10.1145/2601097.2601126">10.1145/2601097.2601126</a>.
  short: K. Raveendran, C. Wojtan, N. Thuerey, G. Türk, in:, ACM Transactions on Graphics,
    ACM, 2014.
conference:
  end_date: 2014-08-14
  location: Vancouver, Canada
  name: 'SIGGRAPH: International Conference and Exhibition on Computer Graphics and
    Interactive Techniques'
  start_date: 2014-08-10
date_created: 2018-12-11T11:55:28Z
date_published: 2014-07-01T00:00:00Z
date_updated: 2022-08-25T14:02:46Z
day: '01'
ddc:
- '000'
department:
- _id: ChWo
doi: 10.1145/2601097.2601126
file:
- access_level: open_access
  checksum: 1752760a2e71e254537f31c0d10d9c6c
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:08:27Z
  date_updated: 2020-07-14T12:45:27Z
  file_id: '4688'
  file_name: IST-2016-606-v1+1_BlendingLiquids-Preprint.pdf
  file_size: 8387384
  relation: main_file
file_date_updated: 2020-07-14T12:45:27Z
has_accepted_license: '1'
intvolume: '        33'
issue: '4'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
project:
- _id: 25636330-B435-11E9-9278-68D0E5697425
  grant_number: 11-NSF-1070
  name: ROOTS Genome-wide Analysis of Root Traits
publication: ACM Transactions on Graphics
publication_status: published
publisher: ACM
publist_id: '4988'
pubrep_id: '606'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Blending liquids
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2014'
...
---
_id: '2059'
abstract:
- lang: eng
  text: Plant embryogenesis is regulated by differential distribution of the plant
    hormone auxin. However, the cells establishing these gradients during microspore
    embryogenesis remain to be identified. For the first time, we describe, using
    the DR5 or DR5rev reporter gene systems, the GFP- and GUS-based auxin biosensors
    to monitor auxin during Brassica napus androgenesis at cellular resolution in
    the initial stages. Our study provides evidence that the distribution of auxin
    changes during embryo development and depends on the temperature-inducible in
    vitro culture conditions. For this, microspores (mcs) were induced to embryogenesis
    by heat treatment and then subjected to genetic modification via Agrobacterium
    tumefaciens. The duration of high temperature treatment had a significant influence
    on auxin distribution in isolated and in vitro-cultured microspores and on microspore-derived
    embryo development. In the “mild” heat-treated (1 day at 32 °C) mcs, auxin localized
    in a polar way already at the uni-nucleate microspore, which was critical for
    the initiation of embryos with suspensor-like structure. Assuming a mean mcs radius
    of 20 μm, endogenous auxin content in a single cell corresponded to concentration
    of 1.01 μM. In mcs subjected to a prolonged heat (5 days at 32 °C), although auxin
    concentration increased dozen times, auxin polarization was set up at a few-celled
    pro-embryos without suspensor. Those embryos were enclosed in the outer wall called
    the exine. The exine rupture was accompanied by the auxin gradient polarization.
    Relative quantitative estimation of auxin, using time-lapse imaging, revealed
    that primordia possess up to 1.3-fold higher amounts than those found in the root
    apices of transgenic MDEs in the presence of exogenous auxin. Our results show,
    for the first time, which concentration of endogenous auxin coincides with the
    first cell division and how the high temperature interplays with auxin, by what
    affects delay early establishing microspore polarity. Moreover, we present how
    the local auxin accumulation demonstrates the apical–basal axis formation of the
    androgenic embryo and directs the axiality of the adult haploid plant.
acknowledgement: The research was supported by the IPP PAS-IPGB SAS bilateral project
  (“Molecular analysis of auxin distribution in oilseed androgenic embryos”), IPP
  PAS-FWO VIB bilateral project (“Auxin as signaling molecule in doubled haploid production
  of rape (B. napus var. oleifera)”), individual national research project 2011/01/D/NZ9/02547,
  and VEGA 2-0090-14.
author:
- first_name: Ewa
  full_name: Dubas, Ewa
  last_name: Dubas
- first_name: Jana
  full_name: Moravčíková, Jana
  last_name: Moravčíková
- first_name: Jana
  full_name: Libantová, Jana
  last_name: Libantová
- first_name: Ildikó
  full_name: Matušíková, Ildikó
  last_name: Matušíková
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
- first_name: Iwona
  full_name: Zur, Iwona
  last_name: Zur
- first_name: Monika
  full_name: Krzewska, Monika
  last_name: Krzewska
citation:
  ama: Dubas E, Moravčíková J, Libantová J, et al. The influence of heat stress on
    auxin distribution in transgenic B napus microspores and microspore derived embryos.
    <i>Protoplasma</i>. 2014;251(5):1077-1087. doi:<a href="https://doi.org/10.1007/s00709-014-0616-1">10.1007/s00709-014-0616-1</a>
  apa: Dubas, E., Moravčíková, J., Libantová, J., Matušíková, I., Benková, E., Zur,
    I., &#38; Krzewska, M. (2014). The influence of heat stress on auxin distribution
    in transgenic B napus microspores and microspore derived embryos. <i>Protoplasma</i>.
    Springer. <a href="https://doi.org/10.1007/s00709-014-0616-1">https://doi.org/10.1007/s00709-014-0616-1</a>
  chicago: Dubas, Ewa, Jana Moravčíková, Jana Libantová, Ildikó Matušíková, Eva Benková,
    Iwona Zur, and Monika Krzewska. “The Influence of Heat Stress on Auxin Distribution
    in Transgenic B Napus Microspores and Microspore Derived Embryos.” <i>Protoplasma</i>.
    Springer, 2014. <a href="https://doi.org/10.1007/s00709-014-0616-1">https://doi.org/10.1007/s00709-014-0616-1</a>.
  ieee: E. Dubas <i>et al.</i>, “The influence of heat stress on auxin distribution
    in transgenic B napus microspores and microspore derived embryos,” <i>Protoplasma</i>,
    vol. 251, no. 5. Springer, pp. 1077–1087, 2014.
  ista: Dubas E, Moravčíková J, Libantová J, Matušíková I, Benková E, Zur I, Krzewska
    M. 2014. The influence of heat stress on auxin distribution in transgenic B napus
    microspores and microspore derived embryos. Protoplasma. 251(5), 1077–1087.
  mla: Dubas, Ewa, et al. “The Influence of Heat Stress on Auxin Distribution in Transgenic
    B Napus Microspores and Microspore Derived Embryos.” <i>Protoplasma</i>, vol.
    251, no. 5, Springer, 2014, pp. 1077–87, doi:<a href="https://doi.org/10.1007/s00709-014-0616-1">10.1007/s00709-014-0616-1</a>.
  short: E. Dubas, J. Moravčíková, J. Libantová, I. Matušíková, E. Benková, I. Zur,
    M. Krzewska, Protoplasma 251 (2014) 1077–1087.
date_created: 2018-12-11T11:55:29Z
date_published: 2014-02-20T00:00:00Z
date_updated: 2021-01-12T06:55:02Z
day: '20'
ddc:
- '580'
department:
- _id: EvBe
doi: 10.1007/s00709-014-0616-1
file:
- access_level: open_access
  checksum: d570a6073765118fc0bb83c31d96fa53
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:18:31Z
  date_updated: 2020-07-14T12:45:27Z
  file_id: '5353'
  file_name: IST-2015-394-v1+1_s00709-014-0616-1.pdf
  file_size: 6377990
  relation: main_file
file_date_updated: 2020-07-14T12:45:27Z
has_accepted_license: '1'
intvolume: '       251'
issue: '5'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 1077 - 1087
publication: Protoplasma
publication_status: published
publisher: Springer
publist_id: '4987'
pubrep_id: '394'
quality_controlled: '1'
scopus_import: 1
status: public
title: The influence of heat stress on auxin distribution in transgenic B napus microspores
  and microspore derived embryos
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 251
year: '2014'
...
---
_id: '2061'
abstract:
- lang: eng
  text: 'Development of cambium and its activity is important for our knowledge of
    the mechanism of secondary growth. Arabidopsis thaliana emerges as a good model
    plant for such a kind of study. Thus, this paper reports on cellular events taking
    place in the interfascicular regions of inflorescence stems of A. thaliana, leading
    to the development of interfascicular cambium from differentiated interfascicular
    parenchyma cells (IPC). These events are as follows: appearance of auxin accumulation,
    PIN1 gene expression, polar PIN1 protein localization in the basal plasma membrane
    and periclinal divisions. Distribution of auxin was observed to be higher in differentiating
    into cambium parenchyma cells compared to cells within the pith and cortex. Expression
    of PIN1 in IPC was always preceded by auxin accumulation. Basal localization of
    PIN1 was already established in the cells prior to their periclinal division.
    These cellular events initiated within parenchyma cells adjacent to the vascular
    bundles and successively extended from that point towards the middle region of
    the interfascicular area, located between neighboring vascular bundles. The final
    consequence of which was the closure of the cambial ring within the stem. Changes
    in the chemical composition of IPC walls were also detected and included changes
    of pectic epitopes, xyloglucans (XG) and extensins rich in hydroxyproline (HRGPs).
    In summary, results presented in this paper describe interfascicular cambium ontogenesis
    in terms of successive cellular events in the interfascicular regions of inflorescence
    stems of Arabidopsis.'
author:
- first_name: Ewa
  full_name: Mazur, Ewa
  last_name: Mazur
- first_name: Ewa
  full_name: Kurczyñska, Ewa
  last_name: Kurczyñska
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Mazur E, Kurczyñska E, Friml J. Cellular events during interfascicular cambium
    ontogenesis in inflorescence stems of Arabidopsis. <i>Protoplasma</i>. 2014;251(5):1125-1139.
    doi:<a href="https://doi.org/10.1007/s00709-014-0620-5">10.1007/s00709-014-0620-5</a>
  apa: Mazur, E., Kurczyñska, E., &#38; Friml, J. (2014). Cellular events during interfascicular
    cambium ontogenesis in inflorescence stems of Arabidopsis. <i>Protoplasma</i>.
    Springer. <a href="https://doi.org/10.1007/s00709-014-0620-5">https://doi.org/10.1007/s00709-014-0620-5</a>
  chicago: Mazur, Ewa, Ewa Kurczyñska, and Jiří Friml. “Cellular Events during Interfascicular
    Cambium Ontogenesis in Inflorescence Stems of Arabidopsis.” <i>Protoplasma</i>.
    Springer, 2014. <a href="https://doi.org/10.1007/s00709-014-0620-5">https://doi.org/10.1007/s00709-014-0620-5</a>.
  ieee: E. Mazur, E. Kurczyñska, and J. Friml, “Cellular events during interfascicular
    cambium ontogenesis in inflorescence stems of Arabidopsis,” <i>Protoplasma</i>,
    vol. 251, no. 5. Springer, pp. 1125–1139, 2014.
  ista: Mazur E, Kurczyñska E, Friml J. 2014. Cellular events during interfascicular
    cambium ontogenesis in inflorescence stems of Arabidopsis. Protoplasma. 251(5),
    1125–1139.
  mla: Mazur, Ewa, et al. “Cellular Events during Interfascicular Cambium Ontogenesis
    in Inflorescence Stems of Arabidopsis.” <i>Protoplasma</i>, vol. 251, no. 5, Springer,
    2014, pp. 1125–39, doi:<a href="https://doi.org/10.1007/s00709-014-0620-5">10.1007/s00709-014-0620-5</a>.
  short: E. Mazur, E. Kurczyñska, J. Friml, Protoplasma 251 (2014) 1125–1139.
date_created: 2018-12-11T11:55:29Z
date_published: 2014-02-14T00:00:00Z
date_updated: 2021-01-12T06:55:03Z
day: '14'
department:
- _id: JiFr
doi: 10.1007/s00709-014-0620-5
intvolume: '       251'
issue: '5'
language:
- iso: eng
month: '02'
oa_version: None
page: 1125 - 1139
publication: Protoplasma
publication_status: published
publisher: Springer
publist_id: '4985'
quality_controlled: '1'
scopus_import: 1
status: public
title: Cellular events during interfascicular cambium ontogenesis in inflorescence
  stems of Arabidopsis
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 251
year: '2014'
...
---
_id: '2062'
abstract:
- lang: eng
  text: The success story of fast-spiking, parvalbumin-positive (PV+) GABAergic interneurons
    (GABA, γ-aminobutyric acid) in the mammalian central nervous system is noteworthy.
    In 1995, the properties of these interneurons were completely unknown. Twenty
    years later, thanks to the massive use of subcellular patch-clamp techniques,
    simultaneous multiple-cell recording, optogenetics, in vivo measurements, and
    computational approaches, our knowledge about PV+ interneurons became more extensive
    than for several types of pyramidal neurons. These findings have implications
    beyond the “small world” of basic research on GABAergic cells. For example, the
    results provide a first proof of principle that neuroscientists might be able
    to close the gaps between the molecular, cellular, network, and behavioral levels,
    representing one of the main challenges at the present time. Furthermore, the
    results may form the basis for PV+ interneurons as therapeutic targets for brain
    disease in the future. However, much needs to be learned about the basic function
    of these interneurons before clinical neuroscientists will be able to use PV+
    interneurons for therapeutic purposes.
article_number: '1255263'
author:
- first_name: Hua
  full_name: Hu, Hua
  id: 4AC0145C-F248-11E8-B48F-1D18A9856A87
  last_name: Hu
- first_name: Jian
  full_name: Gan, Jian
  id: 3614E438-F248-11E8-B48F-1D18A9856A87
  last_name: Gan
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: 'Hu H, Gan J, Jonas PM. Fast-spiking parvalbumin^+ GABAergic interneurons:
    From cellular design to microcircuit function. <i>Science</i>. 2014;345(6196).
    doi:<a href="https://doi.org/10.1126/science.1255263">10.1126/science.1255263</a>'
  apa: 'Hu, H., Gan, J., &#38; Jonas, P. M. (2014). Fast-spiking parvalbumin^+ GABAergic
    interneurons: From cellular design to microcircuit function. <i>Science</i>. American
    Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1255263">https://doi.org/10.1126/science.1255263</a>'
  chicago: 'Hu, Hua, Jian Gan, and Peter M Jonas. “Fast-Spiking Parvalbumin^+ GABAergic
    Interneurons: From Cellular Design to Microcircuit Function.” <i>Science</i>.
    American Association for the Advancement of Science, 2014. <a href="https://doi.org/10.1126/science.1255263">https://doi.org/10.1126/science.1255263</a>.'
  ieee: 'H. Hu, J. Gan, and P. M. Jonas, “Fast-spiking parvalbumin^+ GABAergic interneurons:
    From cellular design to microcircuit function,” <i>Science</i>, vol. 345, no.
    6196. American Association for the Advancement of Science, 2014.'
  ista: 'Hu H, Gan J, Jonas PM. 2014. Fast-spiking parvalbumin^+ GABAergic interneurons:
    From cellular design to microcircuit function. Science. 345(6196), 1255263.'
  mla: 'Hu, Hua, et al. “Fast-Spiking Parvalbumin^+ GABAergic Interneurons: From Cellular
    Design to Microcircuit Function.” <i>Science</i>, vol. 345, no. 6196, 1255263,
    American Association for the Advancement of Science, 2014, doi:<a href="https://doi.org/10.1126/science.1255263">10.1126/science.1255263</a>.'
  short: H. Hu, J. Gan, P.M. Jonas, Science 345 (2014).
date_created: 2018-12-11T11:55:29Z
date_published: 2014-08-01T00:00:00Z
date_updated: 2021-01-12T06:55:03Z
day: '01'
ddc:
- '570'
department:
- _id: PeJo
doi: 10.1126/science.1255263
ec_funded: 1
file:
- access_level: open_access
  checksum: a0036a589037d37e86364fa25cc0a82f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:00Z
  date_updated: 2020-07-14T12:45:27Z
  file_id: '5185'
  file_name: IST-2017-821-v1+1_1255263JonasPVReviewTextR_Final.pdf
  file_size: 215514
  relation: main_file
- access_level: open_access
  checksum: e1f57d2713725449cb898fdcb8ef47b8
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:01Z
  date_updated: 2020-07-14T12:45:27Z
  file_id: '5186'
  file_name: IST-2017-821-v1+2_1255263JonasPVReviewFigures_Final.pdf
  file_size: 1732723
  relation: main_file
file_date_updated: 2020-07-14T12:45:27Z
has_accepted_license: '1'
intvolume: '       345'
issue: '6196'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Submitted Version
project:
- _id: 25C26B1E-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P24909-B24
  name: Mechanisms of transmitter release at GABAergic synapses
- _id: 25C0F108-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '268548'
  name: Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '4984'
pubrep_id: '821'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Fast-spiking parvalbumin^+ GABAergic interneurons: From cellular design to
  microcircuit function'
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 345
year: '2014'
...
---
_id: '2063'
abstract:
- lang: eng
  text: We consider Markov decision processes (MDPs) which are a standard model for
    probabilistic systems.We focus on qualitative properties forMDPs that can express
    that desired behaviors of the system arise almost-surely (with probability 1)
    or with positive probability. We introduce a new simulation relation to capture
    the refinement relation ofMDPs with respect to qualitative properties, and present
    discrete graph theoretic algorithms with quadratic complexity to compute the simulation
    relation.We present an automated technique for assume-guarantee style reasoning
    for compositional analysis ofMDPs with qualitative properties by giving a counterexample
    guided abstraction-refinement approach to compute our new simulation relation.
    We have implemented our algorithms and show that the compositional analysis leads
    to significant improvements.
alternative_title:
- LNCS
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Chmelik, Martin
  id: 3624234E-F248-11E8-B48F-1D18A9856A87
  last_name: Chmelik
- first_name: Przemyslaw
  full_name: Daca, Przemyslaw
  id: 49351290-F248-11E8-B48F-1D18A9856A87
  last_name: Daca
citation:
  ama: 'Chatterjee K, Chmelik M, Daca P. CEGAR for qualitative analysis of probabilistic
    systems. In: Vol 8559. Springer; 2014:473-490. doi:<a href="https://doi.org/10.1007/978-3-319-08867-9_31">10.1007/978-3-319-08867-9_31</a>'
  apa: 'Chatterjee, K., Chmelik, M., &#38; Daca, P. (2014). CEGAR for qualitative
    analysis of probabilistic systems (Vol. 8559, pp. 473–490). Presented at the CAV:
    Computer Aided Verification, Vienna, Austria: Springer. <a href="https://doi.org/10.1007/978-3-319-08867-9_31">https://doi.org/10.1007/978-3-319-08867-9_31</a>'
  chicago: Chatterjee, Krishnendu, Martin Chmelik, and Przemyslaw Daca. “CEGAR for
    Qualitative Analysis of Probabilistic Systems,” 8559:473–90. Springer, 2014. <a
    href="https://doi.org/10.1007/978-3-319-08867-9_31">https://doi.org/10.1007/978-3-319-08867-9_31</a>.
  ieee: 'K. Chatterjee, M. Chmelik, and P. Daca, “CEGAR for qualitative analysis of
    probabilistic systems,” presented at the CAV: Computer Aided Verification, Vienna,
    Austria, 2014, vol. 8559, pp. 473–490.'
  ista: 'Chatterjee K, Chmelik M, Daca P. 2014. CEGAR for qualitative analysis of
    probabilistic systems. CAV: Computer Aided Verification, LNCS, vol. 8559, 473–490.'
  mla: Chatterjee, Krishnendu, et al. <i>CEGAR for Qualitative Analysis of Probabilistic
    Systems</i>. Vol. 8559, Springer, 2014, pp. 473–90, doi:<a href="https://doi.org/10.1007/978-3-319-08867-9_31">10.1007/978-3-319-08867-9_31</a>.
  short: K. Chatterjee, M. Chmelik, P. Daca, in:, Springer, 2014, pp. 473–490.
conference:
  end_date: 2014-07-22
  location: Vienna, Austria
  name: 'CAV: Computer Aided Verification'
  start_date: 2014-07-18
date_created: 2018-12-11T11:55:30Z
date_published: 2014-07-01T00:00:00Z
date_updated: 2023-09-07T11:58:33Z
day: '01'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1007/978-3-319-08867-9_31
ec_funded: 1
intvolume: '      8559'
language:
- iso: eng
month: '07'
oa_version: None
page: 473 - 490
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 25F5A88A-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11402-N23
  name: Moderne Concurrency Paradigms
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
publication_status: published
publisher: Springer
publist_id: '4978'
quality_controlled: '1'
related_material:
  record:
  - id: '5412'
    relation: earlier_version
    status: public
  - id: '5413'
    relation: earlier_version
    status: public
  - id: '5414'
    relation: earlier_version
    status: public
  - id: '1155'
    relation: dissertation_contains
    status: public
status: public
title: CEGAR for qualitative analysis of probabilistic systems
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8559
year: '2014'
...
---
_id: '2064'
abstract:
- lang: eng
  text: We examined the synaptic structure, quantity, and distribution of α-amino-3-hydroxy-5-methylisoxazole-4-propionic
    acid (AMPA)- and N-methyl-D-aspartate (NMDA)-type glutamate receptors (AMPARs
    and NMDARs, respectively) in rat cochlear nuclei by a highly sensitive freeze-fracture
    replica labeling technique. Four excitatory synapses formed by two distinct inputs,
    auditory nerve (AN) and parallel fibers (PF), on different cell types were analyzed.
    These excitatory synapse types included AN synapses on bushy cells (AN-BC synapses)
    and fusiform cells (AN-FC synapses) and PF synapses on FC (PF-FC synapses) and
    cartwheel cell spines (PF-CwC synapses). Immunogold labeling revealed differences
    in synaptic structure as well as AMPAR and NMDAR number and/or density in both
    AN and PF synapses, indicating a target-dependent organization. The immunogold
    receptor labeling also identified differences in the synaptic organization of
    FCs based on AN or PF connections, indicating an input-dependent organization
    in FCs. Among the four excitatory synapse types, the AN-BC synapses were the smallest
    and had the most densely packed intramembrane particles (IMPs), whereas the PF-CwC
    synapses were the largest and had sparsely packed IMPs. All four synapse types
    showed positive correlations between the IMP-cluster area and the AMPAR number,
    indicating a common intrasynapse-type relationship for glutamatergic synapses.
    Immunogold particles for AMPARs were distributed over the entire area of individual
    AN synapses; PF synapses often showed synaptic areas devoid of labeling. The gold-labeling
    for NMDARs occurred in a mosaic fashion, with less positive correlations between
    the IMP-cluster area and the NMDAR number. Our observations reveal target- and
    input-dependent features in the structure, number, and organization of AMPARs
    and NMDARs in AN and PF synapses.
acknowledgement: "National Institutes of Health (NIH) Grant Number: 1R01DC013048‐0;
  Biotechnology and Biological Sciences Research Council, UK Grant Number: BB/J015938/1\r\n"
author:
- first_name: Maía
  full_name: Rubio, Maía
  last_name: Rubio
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Naomi
  full_name: Kamasawa, Naomi
  last_name: Kamasawa
- first_name: Cheryl
  full_name: Clarkson, Cheryl
  last_name: Clarkson
- first_name: Elek
  full_name: Molnár, Elek
  last_name: Molnár
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Rubio M, Fukazawa Y, Kamasawa N, Clarkson C, Molnár E, Shigemoto R. Target-
    and input-dependent organization of AMPA and NMDA receptors in synaptic connections
    of the cochlear nucleus. <i>Journal of Comparative Neurology</i>. 2014;522(18):4023-4042.
    doi:<a href="https://doi.org/10.1002/cne.23654">10.1002/cne.23654</a>
  apa: Rubio, M., Fukazawa, Y., Kamasawa, N., Clarkson, C., Molnár, E., &#38; Shigemoto,
    R. (2014). Target- and input-dependent organization of AMPA and NMDA receptors
    in synaptic connections of the cochlear nucleus. <i>Journal of Comparative Neurology</i>.
    Wiley-Blackwell. <a href="https://doi.org/10.1002/cne.23654">https://doi.org/10.1002/cne.23654</a>
  chicago: Rubio, Maía, Yugo Fukazawa, Naomi Kamasawa, Cheryl Clarkson, Elek Molnár,
    and Ryuichi Shigemoto. “Target- and Input-Dependent Organization of AMPA and NMDA
    Receptors in Synaptic Connections of the Cochlear Nucleus.” <i>Journal of Comparative
    Neurology</i>. Wiley-Blackwell, 2014. <a href="https://doi.org/10.1002/cne.23654">https://doi.org/10.1002/cne.23654</a>.
  ieee: M. Rubio, Y. Fukazawa, N. Kamasawa, C. Clarkson, E. Molnár, and R. Shigemoto,
    “Target- and input-dependent organization of AMPA and NMDA receptors in synaptic
    connections of the cochlear nucleus,” <i>Journal of Comparative Neurology</i>,
    vol. 522, no. 18. Wiley-Blackwell, pp. 4023–4042, 2014.
  ista: Rubio M, Fukazawa Y, Kamasawa N, Clarkson C, Molnár E, Shigemoto R. 2014.
    Target- and input-dependent organization of AMPA and NMDA receptors in synaptic
    connections of the cochlear nucleus. Journal of Comparative Neurology. 522(18),
    4023–4042.
  mla: Rubio, Maía, et al. “Target- and Input-Dependent Organization of AMPA and NMDA
    Receptors in Synaptic Connections of the Cochlear Nucleus.” <i>Journal of Comparative
    Neurology</i>, vol. 522, no. 18, Wiley-Blackwell, 2014, pp. 4023–42, doi:<a href="https://doi.org/10.1002/cne.23654">10.1002/cne.23654</a>.
  short: M. Rubio, Y. Fukazawa, N. Kamasawa, C. Clarkson, E. Molnár, R. Shigemoto,
    Journal of Comparative Neurology 522 (2014) 4023–4042.
date_created: 2018-12-11T11:55:30Z
date_published: 2014-07-29T00:00:00Z
date_updated: 2021-01-12T06:55:05Z
day: '29'
department:
- _id: RySh
doi: 10.1002/cne.23654
intvolume: '       522'
issue: '18'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4198489/
month: '07'
oa: 1
oa_version: Submitted Version
page: 4023 - 4042
publication: Journal of Comparative Neurology
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4974'
quality_controlled: '1'
scopus_import: 1
status: public
title: Target- and input-dependent organization of AMPA and NMDA receptors in synaptic
  connections of the cochlear nucleus
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 522
year: '2014'
...
---
_id: '2082'
abstract:
- lang: eng
  text: 'NMAC is a mode of operation which turns a fixed input-length keyed hash function
    f into a variable input-length function. A practical single-key variant of NMAC
    called HMAC is a very popular and widely deployed message authentication code
    (MAC). Security proofs and attacks for NMAC can typically be lifted to HMAC. NMAC
    was introduced by Bellare, Canetti and Krawczyk [Crypto''96], who proved it to
    be a secure pseudorandom function (PRF), and thus also a MAC, assuming that (1)
    f is a PRF and (2) the function we get when cascading f is weakly collision-resistant.
    Unfortunately, HMAC is typically instantiated with cryptographic hash functions
    like MD5 or SHA-1 for which (2) has been found to be wrong. To restore the provable
    guarantees for NMAC, Bellare [Crypto''06] showed its security based solely on
    the assumption that f is a PRF, albeit via a non-uniform reduction. - Our first
    contribution is a simpler and uniform proof for this fact: If f is an ε-secure
    PRF (against q queries) and a δ-non-adaptively secure PRF (against q queries),
    then NMAC f is an (ε+ℓqδ)-secure PRF against q queries of length at most ℓ blocks
    each. - We then show that this ε+ℓqδ bound is basically tight. For the most interesting
    case where ℓqδ ≥ ε we prove this by constructing an f for which an attack with
    advantage ℓqδ exists. This also violates the bound O(ℓε) on the PRF-security of
    NMAC recently claimed by Koblitz and Menezes. - Finally, we analyze the PRF-security
    of a modification of NMAC called NI [An and Bellare, Crypto''99] that differs
    mainly by using a compression function with an additional keying input. This avoids
    the constant rekeying on multi-block messages in NMAC and allows for a security
    proof starting by the standard switch from a PRF to a random function, followed
    by an information-theoretic analysis. We carry out such an analysis, obtaining
    a tight ℓq2/2 c bound for this step, improving over the trivial bound of ℓ2q2/2c.
    The proof borrows combinatorial techniques originally developed for proving the
    security of CBC-MAC [Bellare et al., Crypto''05].'
alternative_title:
- LNCS
author:
- first_name: Peter
  full_name: Gazi, Peter
  id: 3E0BFE38-F248-11E8-B48F-1D18A9856A87
  last_name: Gazi
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
- first_name: Michal
  full_name: Rybar, Michal
  id: 2B3E3DE8-F248-11E8-B48F-1D18A9856A87
  last_name: Rybar
citation:
  ama: 'Gazi P, Pietrzak KZ, Rybar M. The exact PRF-security of NMAC and HMAC. In:
    Garay J, Gennaro R, eds. Vol 8616. Springer; 2014:113-130. doi:<a href="https://doi.org/10.1007/978-3-662-44371-2_7">10.1007/978-3-662-44371-2_7</a>'
  apa: 'Gazi, P., Pietrzak, K. Z., &#38; Rybar, M. (2014). The exact PRF-security
    of NMAC and HMAC. In J. Garay &#38; R. Gennaro (Eds.) (Vol. 8616, pp. 113–130).
    Presented at the CRYPTO: International Cryptology Conference, Santa Barbara, USA:
    Springer. <a href="https://doi.org/10.1007/978-3-662-44371-2_7">https://doi.org/10.1007/978-3-662-44371-2_7</a>'
  chicago: Gazi, Peter, Krzysztof Z Pietrzak, and Michal Rybar. “The Exact PRF-Security
    of NMAC and HMAC.” edited by Juan Garay and Rosario Gennaro, 8616:113–30. Springer,
    2014. <a href="https://doi.org/10.1007/978-3-662-44371-2_7">https://doi.org/10.1007/978-3-662-44371-2_7</a>.
  ieee: 'P. Gazi, K. Z. Pietrzak, and M. Rybar, “The exact PRF-security of NMAC and
    HMAC,” presented at the CRYPTO: International Cryptology Conference, Santa Barbara,
    USA, 2014, vol. 8616, no. 1, pp. 113–130.'
  ista: 'Gazi P, Pietrzak KZ, Rybar M. 2014. The exact PRF-security of NMAC and HMAC.
    CRYPTO: International Cryptology Conference, LNCS, vol. 8616, 113–130.'
  mla: Gazi, Peter, et al. <i>The Exact PRF-Security of NMAC and HMAC</i>. Edited
    by Juan Garay and Rosario Gennaro, vol. 8616, no. 1, Springer, 2014, pp. 113–30,
    doi:<a href="https://doi.org/10.1007/978-3-662-44371-2_7">10.1007/978-3-662-44371-2_7</a>.
  short: P. Gazi, K.Z. Pietrzak, M. Rybar, in:, J. Garay, R. Gennaro (Eds.), Springer,
    2014, pp. 113–130.
conference:
  end_date: 2014-08-21
  location: Santa Barbara, USA
  name: 'CRYPTO: International Cryptology Conference'
  start_date: 2014-08-17
date_created: 2018-12-11T11:55:36Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2023-09-07T12:02:27Z
day: '01'
ddc:
- '000'
- '004'
department:
- _id: KrPi
doi: 10.1007/978-3-662-44371-2_7
ec_funded: 1
editor:
- first_name: Juan
  full_name: Garay, Juan
  last_name: Garay
- first_name: Rosario
  full_name: Gennaro, Rosario
  last_name: Gennaro
file:
- access_level: open_access
  checksum: dab6ab36a5f6af94f2b597e6404ed11d
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:17Z
  date_updated: 2020-07-14T12:45:28Z
  file_id: '4999'
  file_name: IST-2016-682-v1+1_578.pdf
  file_size: 492310
  relation: main_file
file_date_updated: 2020-07-14T12:45:28Z
has_accepted_license: '1'
intvolume: '      8616'
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 113 - 130
project:
- _id: 258C570E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '259668'
  name: Provable Security for Physical Cryptography
publication_status: published
publisher: Springer
publist_id: '4955'
pubrep_id: '682'
quality_controlled: '1'
related_material:
  record:
  - id: '838'
    relation: dissertation_contains
    status: public
status: public
title: The exact PRF-security of NMAC and HMAC
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 8616
year: '2014'
...
---
_id: '2083'
abstract:
- lang: eng
  text: Understanding the effects of sex and migration on adaptation to novel environments
    remains a key problem in evolutionary biology. Using a single-cell alga Chlamydomonas
    reinhardtii, we investigated how sex and migration affected rates of evolutionary
    rescue in a sink environment, and subsequent changes in fitness following evolutionary
    rescue. We show that sex and migration affect both the rate of evolutionary rescue
    and subsequent adaptation. However, their combined effects change as the populations
    adapt to a sink habitat. Both sex and migration independently increased rates
    of evolutionary rescue, but the effect of sex on subsequent fitness improvements,
    following initial rescue, changed with migration, as sex was beneficial in the
    absence of migration but constraining adaptation when combined with migration.
    These results suggest that sex and migration are beneficial during the initial
    stages of adaptation, but can become detrimental as the population adapts to its
    environment.
acknowledgement: The authors are grateful to the Leverhulme Trust (F/00 215/AW) for
  funding this work.
article_processing_charge: No
article_type: original
author:
- first_name: Mato
  full_name: Lagator, Mato
  id: 345D25EC-F248-11E8-B48F-1D18A9856A87
  last_name: Lagator
- first_name: Andrew
  full_name: Morgan, Andrew
  last_name: Morgan
- first_name: Paul
  full_name: Neve, Paul
  last_name: Neve
- first_name: Nick
  full_name: Colegrave, Nick
  last_name: Colegrave
citation:
  ama: Lagator M, Morgan A, Neve P, Colegrave N. Role of sex and migration in adaptation
    to sink environments. <i>Evolution</i>. 2014;68(8):2296-2305. doi:<a href="https://doi.org/10.1111/evo.12440">10.1111/evo.12440</a>
  apa: Lagator, M., Morgan, A., Neve, P., &#38; Colegrave, N. (2014). Role of sex
    and migration in adaptation to sink environments. <i>Evolution</i>. Wiley. <a
    href="https://doi.org/10.1111/evo.12440">https://doi.org/10.1111/evo.12440</a>
  chicago: Lagator, Mato, Andrew Morgan, Paul Neve, and Nick Colegrave. “Role of Sex
    and Migration in Adaptation to Sink Environments.” <i>Evolution</i>. Wiley, 2014.
    <a href="https://doi.org/10.1111/evo.12440">https://doi.org/10.1111/evo.12440</a>.
  ieee: M. Lagator, A. Morgan, P. Neve, and N. Colegrave, “Role of sex and migration
    in adaptation to sink environments,” <i>Evolution</i>, vol. 68, no. 8. Wiley,
    pp. 2296–2305, 2014.
  ista: Lagator M, Morgan A, Neve P, Colegrave N. 2014. Role of sex and migration
    in adaptation to sink environments. Evolution. 68(8), 2296–2305.
  mla: Lagator, Mato, et al. “Role of Sex and Migration in Adaptation to Sink Environments.”
    <i>Evolution</i>, vol. 68, no. 8, Wiley, 2014, pp. 2296–305, doi:<a href="https://doi.org/10.1111/evo.12440">10.1111/evo.12440</a>.
  short: M. Lagator, A. Morgan, P. Neve, N. Colegrave, Evolution 68 (2014) 2296–2305.
date_created: 2018-12-11T11:55:36Z
date_published: 2014-04-25T00:00:00Z
date_updated: 2023-02-23T14:06:51Z
day: '25'
ddc:
- '570'
department:
- _id: CaGu
doi: 10.1111/evo.12440
file:
- access_level: open_access
  checksum: 8d459b07e4a11bb5fde92d969184fe48
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-14T16:40:31Z
  date_updated: 2020-07-14T12:45:28Z
  file_id: '7845'
  file_name: 2014_Evolution_Lagator.pdf
  file_size: 467254
  relation: main_file
file_date_updated: 2020-07-14T12:45:28Z
has_accepted_license: '1'
intvolume: '        68'
issue: '8'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 2296 - 2305
publication: Evolution
publication_status: published
publisher: Wiley
publist_id: '4954'
quality_controlled: '1'
related_material:
  record:
  - id: '9747'
    relation: research_data
    status: public
scopus_import: 1
status: public
title: Role of sex and migration in adaptation to sink environments
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 68
year: '2014'
...
---
_id: '2084'
abstract:
- lang: eng
  text: Receptor tyrosine kinases (RTKs) are a large family of cell surface receptors
    that sense growth factors and hormones and regulate a variety of cell behaviours
    in health and disease. Contactless activation of RTKs with spatial and temporal
    precision is currently not feasible. Here, we generated RTKs that are insensitive
    to endogenous ligands but can be selectively activated by low-intensity blue light.
    We screened light-oxygen-voltage (LOV)-sensing domains for their ability to activate
    RTKs by light-activated dimerization. Incorporation of LOV domains found in aureochrome
    photoreceptors of stramenopiles resulted in robust activation of the fibroblast
    growth factor receptor 1 (FGFR1), epidermal growth factor receptor (EGFR) and
    rearranged during transfection (RET). In human cancer and endothelial cells, light
    induced cellular signalling with spatial and temporal precision. Furthermore,
    light faithfully mimicked complex mitogenic and morphogenic cell behaviour induced
    by growth factors. RTKs under optical control (Opto-RTKs) provide a powerful optogenetic
    approach to actuate cellular signals and manipulate cell behaviour.
acknowledgement: European Union Seventh Framework Programme; Human Frontier Science
  Program; Oesterreichische Nationalbank Anniversary Fund 14211; Austrian Research
  Promotion Agency; FemTech
author:
- first_name: Michael
  full_name: Grusch, Michael
  last_name: Grusch
- first_name: Karin
  full_name: Schelch, Karin
  last_name: Schelch
- first_name: Robert
  full_name: Riedler, Robert
  last_name: Riedler
- first_name: Eva
  full_name: Gschaider-Reichhart, Eva
  id: 3FEE232A-F248-11E8-B48F-1D18A9856A87
  last_name: Gschaider-Reichhart
  orcid: 0000-0002-7218-7738
- first_name: Christopher
  full_name: Differ, Christopher
  last_name: Differ
- first_name: Walter
  full_name: Berger, Walter
  last_name: Berger
- first_name: Álvaro
  full_name: Inglés Prieto, Álvaro
  id: 2A9DB292-F248-11E8-B48F-1D18A9856A87
  last_name: Inglés Prieto
  orcid: 0000-0002-5409-8571
- first_name: Harald L
  full_name: Janovjak, Harald L
  id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
  last_name: Janovjak
  orcid: 0000-0002-8023-9315
citation:
  ama: Grusch M, Schelch K, Riedler R, et al. Spatio-temporally precise activation
    of engineered receptor tyrosine kinases by light. <i>EMBO Journal</i>. 2014;33(15):1713-1726.
    doi:<a href="https://doi.org/10.15252/embj.201387695">10.15252/embj.201387695</a>
  apa: Grusch, M., Schelch, K., Riedler, R., Gschaider-Reichhart, E., Differ, C.,
    Berger, W., … Janovjak, H. L. (2014). Spatio-temporally precise activation of
    engineered receptor tyrosine kinases by light. <i>EMBO Journal</i>. Wiley-Blackwell.
    <a href="https://doi.org/10.15252/embj.201387695">https://doi.org/10.15252/embj.201387695</a>
  chicago: Grusch, Michael, Karin Schelch, Robert Riedler, Eva Gschaider-Reichhart,
    Christopher Differ, Walter Berger, Álvaro Inglés Prieto, and Harald L Janovjak.
    “Spatio-Temporally Precise Activation of Engineered Receptor Tyrosine Kinases
    by Light.” <i>EMBO Journal</i>. Wiley-Blackwell, 2014. <a href="https://doi.org/10.15252/embj.201387695">https://doi.org/10.15252/embj.201387695</a>.
  ieee: M. Grusch <i>et al.</i>, “Spatio-temporally precise activation of engineered
    receptor tyrosine kinases by light,” <i>EMBO Journal</i>, vol. 33, no. 15. Wiley-Blackwell,
    pp. 1713–1726, 2014.
  ista: Grusch M, Schelch K, Riedler R, Gschaider-Reichhart E, Differ C, Berger W,
    Inglés Prieto Á, Janovjak HL. 2014. Spatio-temporally precise activation of engineered
    receptor tyrosine kinases by light. EMBO Journal. 33(15), 1713–1726.
  mla: Grusch, Michael, et al. “Spatio-Temporally Precise Activation of Engineered
    Receptor Tyrosine Kinases by Light.” <i>EMBO Journal</i>, vol. 33, no. 15, Wiley-Blackwell,
    2014, pp. 1713–26, doi:<a href="https://doi.org/10.15252/embj.201387695">10.15252/embj.201387695</a>.
  short: M. Grusch, K. Schelch, R. Riedler, E. Gschaider-Reichhart, C. Differ, W.
    Berger, Á. Inglés Prieto, H.L. Janovjak, EMBO Journal 33 (2014) 1713–1726.
date_created: 2018-12-11T11:55:37Z
date_published: 2014-07-01T00:00:00Z
date_updated: 2023-09-07T12:49:09Z
day: '01'
department:
- _id: HaJa
doi: 10.15252/embj.201387695
intvolume: '        33'
issue: '15'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4194103/
month: '07'
oa: 1
oa_version: Submitted Version
page: 1713 - 1726
publication: EMBO Journal
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4953'
quality_controlled: '1'
related_material:
  record:
  - id: '418'
    relation: dissertation_contains
    status: public
scopus_import: 1
status: public
title: Spatio-temporally precise activation of engineered receptor tyrosine kinases
  by light
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2014'
...
---
_id: '2086'
abstract:
- lang: eng
  text: Pathogens may gain a fitness advantage through manipulation of the behaviour
    of their hosts. Likewise, host behavioural changes can be a defence mechanism,
    counteracting the impact of pathogens on host fitness. We apply harmonic radar
    technology to characterize the impact of an emerging pathogen - Nosema ceranae
    (Microsporidia) - on honeybee (Apis mellifera) flight and orientation performance
    in the field. Honeybees are the most important commercial pollinators. Emerging
    diseases have been proposed to play a prominent role in colony decline, partly
    through sub-lethal behavioural manipulation of their hosts. We found that homing
    success was significantly reduced in diseased (65.8%) versus healthy foragers
    (92.5%). Although lost bees had significantly reduced continuous flight times
    and prolonged resting times, other flight characteristics and navigational abilities
    showed no significant difference between infected and non-infected bees. Our results
    suggest that infected bees express normal flight characteristics but are constrained
    in their homing ability, potentially compromising the colony by reducing its resource
    inputs, but also counteracting the intra-colony spread of infection. We provide
    the first high-resolution analysis of sub-lethal effects of an emerging disease
    on insect flight behaviour. The potential causes and the implications for both
    host and parasite are discussed.
acknowledgement: This study was funded jointly by a grant from BBSRC, Defra, NERC,
  the Scottish Government and the Wellcome Trust, under the Insect Pollinators Initiative
  (grant numbers BB/I00097/1 and BB/I000100/1). Rothamsted Research is a national
  institute of bioscience strategically funded by the UK Biotechnology and Biological
  Sciences Research Council (BBSRC).
article_number: e103989
author:
- first_name: Stephan
  full_name: Wolf, Stephan
  last_name: Wolf
- first_name: Dino
  full_name: Mcmahon, Dino
  last_name: Mcmahon
- first_name: Ka
  full_name: Lim, Ka
  last_name: Lim
- first_name: Christopher
  full_name: Pull, Christopher
  id: 3C7F4840-F248-11E8-B48F-1D18A9856A87
  last_name: Pull
  orcid: 0000-0003-1122-3982
- first_name: Suzanne
  full_name: Clark, Suzanne
  last_name: Clark
- first_name: Robert
  full_name: Paxton, Robert
  last_name: Paxton
- first_name: Juliet
  full_name: Osborne, Juliet
  last_name: Osborne
citation:
  ama: 'Wolf S, Mcmahon D, Lim K, et al. So near and yet so far: Harmonic radar reveals
    reduced homing ability of Nosema infected honeybees. <i>PLoS One</i>. 2014;9(8).
    doi:<a href="https://doi.org/10.1371/journal.pone.0103989">10.1371/journal.pone.0103989</a>'
  apa: 'Wolf, S., Mcmahon, D., Lim, K., Pull, C., Clark, S., Paxton, R., &#38; Osborne,
    J. (2014). So near and yet so far: Harmonic radar reveals reduced homing ability
    of Nosema infected honeybees. <i>PLoS One</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0103989">https://doi.org/10.1371/journal.pone.0103989</a>'
  chicago: 'Wolf, Stephan, Dino Mcmahon, Ka Lim, Christopher Pull, Suzanne Clark,
    Robert Paxton, and Juliet Osborne. “So near and yet so Far: Harmonic Radar Reveals
    Reduced Homing Ability of Nosema Infected Honeybees.” <i>PLoS One</i>. Public
    Library of Science, 2014. <a href="https://doi.org/10.1371/journal.pone.0103989">https://doi.org/10.1371/journal.pone.0103989</a>.'
  ieee: 'S. Wolf <i>et al.</i>, “So near and yet so far: Harmonic radar reveals reduced
    homing ability of Nosema infected honeybees,” <i>PLoS One</i>, vol. 9, no. 8.
    Public Library of Science, 2014.'
  ista: 'Wolf S, Mcmahon D, Lim K, Pull C, Clark S, Paxton R, Osborne J. 2014. So
    near and yet so far: Harmonic radar reveals reduced homing ability of Nosema infected
    honeybees. PLoS One. 9(8), e103989.'
  mla: 'Wolf, Stephan, et al. “So near and yet so Far: Harmonic Radar Reveals Reduced
    Homing Ability of Nosema Infected Honeybees.” <i>PLoS One</i>, vol. 9, no. 8,
    e103989, Public Library of Science, 2014, doi:<a href="https://doi.org/10.1371/journal.pone.0103989">10.1371/journal.pone.0103989</a>.'
  short: S. Wolf, D. Mcmahon, K. Lim, C. Pull, S. Clark, R. Paxton, J. Osborne, PLoS
    One 9 (2014).
date_created: 2018-12-11T11:55:37Z
date_published: 2014-08-06T00:00:00Z
date_updated: 2023-02-23T14:11:56Z
day: '06'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.1371/journal.pone.0103989
file:
- access_level: open_access
  checksum: 2fc62c6739eada4bddf026afbae669db
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:55Z
  date_updated: 2020-07-14T12:45:28Z
  file_id: '5042'
  file_name: IST-2016-437-v1+1_journal.pone.0103989.pdf
  file_size: 1013386
  relation: main_file
file_date_updated: 2020-07-14T12:45:28Z
has_accepted_license: '1'
intvolume: '         9'
issue: '8'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '4949'
pubrep_id: '437'
quality_controlled: '1'
related_material:
  record:
  - id: '9888'
    relation: research_data
    status: public
scopus_import: 1
status: public
title: 'So near and yet so far: Harmonic radar reveals reduced homing ability of Nosema
  infected honeybees'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2014'
...
---
_id: '2141'
abstract:
- lang: eng
  text: The computation of the winning set for Büchi objectives in alternating games
    on graphs is a central problem in computer-aided verification with a large number
    of applications. The long-standing best known upper bound for solving the problem
    is Õ(n ⋅ m), where n is the number of vertices and m is the number of edges in
    the graph. We are the first to break the Õ(n ⋅ m) boundary by presenting a new
    technique that reduces the running time to O(n2). This bound also leads to O(n2)-time
    algorithms for computing the set of almost-sure winning vertices for Büchi objectives
    (1) in alternating games with probabilistic transitions (improving an earlier
    bound of Õ(n ⋅ m)), (2) in concurrent graph games with constant actions (improving
    an earlier bound of O(n3)), and (3) in Markov decision processes (improving for
    m&gt;n4/3 an earlier bound of O(m ⋅ √m)). We then show how to maintain the winning
    set for Büchi objectives in alternating games under a sequence of edge insertions
    or a sequence of edge deletions in O(n) amortized time per operation. Our algorithms
    are the first dynamic algorithms for this problem. We then consider another core
    graph theoretic problem in verification of probabilistic systems, namely computing
    the maximal end-component decomposition of a graph. We present two improved static
    algorithms for the maximal end-component decomposition problem. Our first algorithm
    is an O(m ⋅ √m)-time algorithm, and our second algorithm is an O(n2)-time algorithm
    which is obtained using the same technique as for alternating Büchi games. Thus,
    we obtain an O(min &amp;lcu;m ⋅ √m,n2})-time algorithm improving the long-standing
    O(n ⋅ m) time bound. Finally, we show how to maintain the maximal end-component
    decomposition of a graph under a sequence of edge insertions or a sequence of
    edge deletions in O(n) amortized time per edge deletion, and O(m) worst-case time
    per edge insertion. Again, our algorithms are the first dynamic algorithms for
    this problem.
article_number: a15
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
citation:
  ama: Chatterjee K, Henzinger MH. Efficient and dynamic algorithms for alternating
    Büchi games and maximal end-component decomposition. <i>Journal of the ACM</i>.
    2014;61(3). doi:<a href="https://doi.org/10.1145/2597631">10.1145/2597631</a>
  apa: Chatterjee, K., &#38; Henzinger, M. H. (2014). Efficient and dynamic algorithms
    for alternating Büchi games and maximal end-component decomposition. <i>Journal
    of the ACM</i>. ACM. <a href="https://doi.org/10.1145/2597631">https://doi.org/10.1145/2597631</a>
  chicago: Chatterjee, Krishnendu, and Monika H Henzinger. “Efficient and Dynamic
    Algorithms for Alternating Büchi Games and Maximal End-Component Decomposition.”
    <i>Journal of the ACM</i>. ACM, 2014. <a href="https://doi.org/10.1145/2597631">https://doi.org/10.1145/2597631</a>.
  ieee: K. Chatterjee and M. H. Henzinger, “Efficient and dynamic algorithms for alternating
    Büchi games and maximal end-component decomposition,” <i>Journal of the ACM</i>,
    vol. 61, no. 3. ACM, 2014.
  ista: Chatterjee K, Henzinger MH. 2014. Efficient and dynamic algorithms for alternating
    Büchi games and maximal end-component decomposition. Journal of the ACM. 61(3),
    a15.
  mla: Chatterjee, Krishnendu, and Monika H. Henzinger. “Efficient and Dynamic Algorithms
    for Alternating Büchi Games and Maximal End-Component Decomposition.” <i>Journal
    of the ACM</i>, vol. 61, no. 3, a15, ACM, 2014, doi:<a href="https://doi.org/10.1145/2597631">10.1145/2597631</a>.
  short: K. Chatterjee, M.H. Henzinger, Journal of the ACM 61 (2014).
date_created: 2018-12-11T11:55:57Z
date_published: 2014-05-01T00:00:00Z
date_updated: 2025-06-02T08:53:48Z
day: '01'
department:
- _id: KrCh
doi: 10.1145/2597631
ec_funded: 1
intvolume: '        61'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprints.cs.univie.ac.at/3933/
month: '05'
oa: 1
oa_version: Submitted Version
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
  grant_number: ICT15-003
  name: Efficient Algorithms for Computer Aided Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: Journal of the ACM
publication_status: published
publisher: ACM
publist_id: '4883'
quality_controlled: '1'
related_material:
  record:
  - id: '3165'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Efficient and dynamic algorithms for alternating Büchi games and maximal end-component
  decomposition
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 61
year: '2014'
...
---
_id: '2153'
abstract:
- lang: eng
  text: 'We define a simple, explicit map sending a morphism f : M → N of pointwise
    finite dimensional persistence modules to a matching between the barcodes of M
    and N. Our main result is that, in a precise sense, the quality of this matching
    is tightly controlled by the lengths of the longest intervals in the barcodes
    of ker f and coker f . As an immediate corollary, we obtain a new proof of the
    algebraic stability theorem for persistence barcodes [5, 9], a fundamental result
    in the theory of persistent homology. In contrast to previous proofs, ours shows
    explicitly how a δ-interleaving morphism between two persistence modules induces
    a δ-matching between the barcodes of the two modules. Our main result also specializes
    to a structure theorem for submodules and quotients of persistence modules. Copyright
    is held by the owner/author(s).'
author:
- first_name: Ulrich
  full_name: Bauer, Ulrich
  id: 2ADD483A-F248-11E8-B48F-1D18A9856A87
  last_name: Bauer
  orcid: 0000-0002-9683-0724
- first_name: Michael
  full_name: Lesnick, Michael
  last_name: Lesnick
citation:
  ama: 'Bauer U, Lesnick M. Induced matchings of barcodes and the algebraic stability
    of persistence. In: <i>Proceedings of the Annual Symposium on Computational Geometry</i>.
    ACM; 2014:355-364. doi:<a href="https://doi.org/10.1145/2582112.2582168">10.1145/2582112.2582168</a>'
  apa: 'Bauer, U., &#38; Lesnick, M. (2014). Induced matchings of barcodes and the
    algebraic stability of persistence. In <i>Proceedings of the Annual Symposium
    on Computational Geometry</i> (pp. 355–364). Kyoto, Japan: ACM. <a href="https://doi.org/10.1145/2582112.2582168">https://doi.org/10.1145/2582112.2582168</a>'
  chicago: Bauer, Ulrich, and Michael Lesnick. “Induced Matchings of Barcodes and
    the Algebraic Stability of Persistence.” In <i>Proceedings of the Annual Symposium
    on Computational Geometry</i>, 355–64. ACM, 2014. <a href="https://doi.org/10.1145/2582112.2582168">https://doi.org/10.1145/2582112.2582168</a>.
  ieee: U. Bauer and M. Lesnick, “Induced matchings of barcodes and the algebraic
    stability of persistence,” in <i>Proceedings of the Annual Symposium on Computational
    Geometry</i>, Kyoto, Japan, 2014, pp. 355–364.
  ista: 'Bauer U, Lesnick M. 2014. Induced matchings of barcodes and the algebraic
    stability of persistence. Proceedings of the Annual Symposium on Computational
    Geometry. SoCG: Symposium on Computational Geometry, 355–364.'
  mla: Bauer, Ulrich, and Michael Lesnick. “Induced Matchings of Barcodes and the
    Algebraic Stability of Persistence.” <i>Proceedings of the Annual Symposium on
    Computational Geometry</i>, ACM, 2014, pp. 355–64, doi:<a href="https://doi.org/10.1145/2582112.2582168">10.1145/2582112.2582168</a>.
  short: U. Bauer, M. Lesnick, in:, Proceedings of the Annual Symposium on Computational
    Geometry, ACM, 2014, pp. 355–364.
conference:
  end_date: 2014-06-11
  location: Kyoto, Japan
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2014-06-08
date_created: 2018-12-11T11:56:01Z
date_published: 2014-06-01T00:00:00Z
date_updated: 2021-01-12T06:55:38Z
day: '01'
department:
- _id: HeEd
doi: 10.1145/2582112.2582168
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1311.3681
month: '06'
oa: 1
oa_version: Submitted Version
page: 355 - 364
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '318493'
  name: Topological Complex Systems
publication: Proceedings of the Annual Symposium on Computational Geometry
publication_status: published
publisher: ACM
publist_id: '4853'
quality_controlled: '1'
scopus_import: 1
status: public
title: Induced matchings of barcodes and the algebraic stability of persistence
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '2154'
abstract:
- lang: eng
  text: A result of Boros and Füredi (d = 2) and of Bárány (arbitrary d) asserts that
    for every d there exists cd &gt; 0 such that for every n-point set P ⊂ ℝd, some
    point of ℝd is covered by at least (Formula presented.) of the d-simplices spanned
    by the points of P. The largest possible value of cd has been the subject of ongoing
    research. Recently Gromov improved the existing lower bounds considerably by introducing
    a new, topological proof method. We provide an exposition of the combinatorial
    component of Gromov's approach, in terms accessible to combinatorialists and discrete
    geometers, and we investigate the limits of his method. In particular, we give
    tighter bounds on the cofilling profiles for the (n - 1)-simplex. These bounds
    yield a minor improvement over Gromov's lower bounds on cd for large d, but they
    also show that the room for further improvement through the cofilling profiles
    alone is quite small. We also prove a slightly better lower bound for c3 by an
    approach using an additional structure besides the cofilling profiles. We formulate
    a combinatorial extremal problem whose solution might perhaps lead to a tight
    lower bound for cd.
acknowledgement: Swiss National Science Foundation (SNF 200021-125309, 200020-138230,
  200020-12507)
author:
- first_name: Jiří
  full_name: Matoušek, Jiří
  last_name: Matoušek
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
citation:
  ama: Matoušek J, Wagner U. On Gromov’s method of selecting heavily covered points.
    <i>Discrete &#38; Computational Geometry</i>. 2014;52(1):1-33. doi:<a href="https://doi.org/10.1007/s00454-014-9584-7">10.1007/s00454-014-9584-7</a>
  apa: Matoušek, J., &#38; Wagner, U. (2014). On Gromov’s method of selecting heavily
    covered points. <i>Discrete &#38; Computational Geometry</i>. Springer. <a href="https://doi.org/10.1007/s00454-014-9584-7">https://doi.org/10.1007/s00454-014-9584-7</a>
  chicago: Matoušek, Jiří, and Uli Wagner. “On Gromov’s Method of Selecting Heavily
    Covered Points.” <i>Discrete &#38; Computational Geometry</i>. Springer, 2014.
    <a href="https://doi.org/10.1007/s00454-014-9584-7">https://doi.org/10.1007/s00454-014-9584-7</a>.
  ieee: J. Matoušek and U. Wagner, “On Gromov’s method of selecting heavily covered
    points,” <i>Discrete &#38; Computational Geometry</i>, vol. 52, no. 1. Springer,
    pp. 1–33, 2014.
  ista: Matoušek J, Wagner U. 2014. On Gromov’s method of selecting heavily covered
    points. Discrete &#38; Computational Geometry. 52(1), 1–33.
  mla: Matoušek, Jiří, and Uli Wagner. “On Gromov’s Method of Selecting Heavily Covered
    Points.” <i>Discrete &#38; Computational Geometry</i>, vol. 52, no. 1, Springer,
    2014, pp. 1–33, doi:<a href="https://doi.org/10.1007/s00454-014-9584-7">10.1007/s00454-014-9584-7</a>.
  short: J. Matoušek, U. Wagner, Discrete &#38; Computational Geometry 52 (2014) 1–33.
date_created: 2018-12-11T11:56:01Z
date_published: 2014-07-01T00:00:00Z
date_updated: 2021-01-12T06:55:38Z
day: '01'
department:
- _id: UlWa
doi: 10.1007/s00454-014-9584-7
intvolume: '        52'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1102.3515
month: '07'
oa: 1
oa_version: Submitted Version
page: 1 - 33
project:
- _id: 25FA3206-B435-11E9-9278-68D0E5697425
  grant_number: PP00P2_138948
  name: 'Embeddings in Higher Dimensions: Algorithms and Combinatorics'
publication: Discrete & Computational Geometry
publication_status: published
publisher: Springer
publist_id: '4852'
quality_controlled: '1'
scopus_import: 1
status: public
title: On Gromov's method of selecting heavily covered points
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 52
year: '2014'
...
---
_id: '2155'
abstract:
- lang: eng
  text: Given a finite set of points in Rn and a positive radius, we study the Čech,
    Delaunay-Čech, alpha, and wrap complexes as instances of a generalized discrete
    Morse theory. We prove that the latter three complexes are simple-homotopy equivalent.
    Our results have applications in topological data analysis and in the reconstruction
    of shapes from sampled data. Copyright is held by the owner/author(s).
acknowledgement: This research is partially supported by ESF under the ACAT Research
  Network Programme, and by the Russian Government under mega project 11.G34.31.0053
author:
- first_name: Ulrich
  full_name: Bauer, Ulrich
  id: 2ADD483A-F248-11E8-B48F-1D18A9856A87
  last_name: Bauer
  orcid: 0000-0002-9683-0724
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: 'Bauer U, Edelsbrunner H. The morse theory of Čech and Delaunay filtrations.
    In: <i>Proceedings of the Annual Symposium on Computational Geometry</i>. ACM;
    2014:484-490. doi:<a href="https://doi.org/10.1145/2582112.2582167">10.1145/2582112.2582167</a>'
  apa: 'Bauer, U., &#38; Edelsbrunner, H. (2014). The morse theory of Čech and Delaunay
    filtrations. In <i>Proceedings of the Annual Symposium on Computational Geometry</i>
    (pp. 484–490). Kyoto, Japan: ACM. <a href="https://doi.org/10.1145/2582112.2582167">https://doi.org/10.1145/2582112.2582167</a>'
  chicago: Bauer, Ulrich, and Herbert Edelsbrunner. “The Morse Theory of Čech and
    Delaunay Filtrations.” In <i>Proceedings of the Annual Symposium on Computational
    Geometry</i>, 484–90. ACM, 2014. <a href="https://doi.org/10.1145/2582112.2582167">https://doi.org/10.1145/2582112.2582167</a>.
  ieee: U. Bauer and H. Edelsbrunner, “The morse theory of Čech and Delaunay filtrations,”
    in <i>Proceedings of the Annual Symposium on Computational Geometry</i>, Kyoto,
    Japan, 2014, pp. 484–490.
  ista: 'Bauer U, Edelsbrunner H. 2014. The morse theory of Čech and Delaunay filtrations.
    Proceedings of the Annual Symposium on Computational Geometry. SoCG: Symposium
    on Computational Geometry, 484–490.'
  mla: Bauer, Ulrich, and Herbert Edelsbrunner. “The Morse Theory of Čech and Delaunay
    Filtrations.” <i>Proceedings of the Annual Symposium on Computational Geometry</i>,
    ACM, 2014, pp. 484–90, doi:<a href="https://doi.org/10.1145/2582112.2582167">10.1145/2582112.2582167</a>.
  short: U. Bauer, H. Edelsbrunner, in:, Proceedings of the Annual Symposium on Computational
    Geometry, ACM, 2014, pp. 484–490.
conference:
  end_date: 2014-06-11
  location: Kyoto, Japan
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2014-06-08
date_created: 2018-12-11T11:56:01Z
date_published: 2014-06-01T00:00:00Z
date_updated: 2021-01-12T06:55:38Z
day: '01'
department:
- _id: HeEd
doi: 10.1145/2582112.2582167
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1312.1231
month: '06'
oa: 1
oa_version: Submitted Version
page: 484 - 490
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '318493'
  name: Topological Complex Systems
publication: Proceedings of the Annual Symposium on Computational Geometry
publication_status: published
publisher: ACM
publist_id: '4851'
quality_controlled: '1'
scopus_import: 1
status: public
title: The morse theory of Čech and Delaunay filtrations
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '2156'
abstract:
- lang: eng
  text: We propose a metric for Reeb graphs, called the functional distortion distance.
    Under this distance, the Reeb graph is stable against small changes of input functions.
    At the same time, it remains discriminative at differentiating input functions.
    In particular, the main result is that the functional distortion distance between
    two Reeb graphs is bounded from below by the bottleneck distance between both
    the ordinary and extended persistence diagrams for appropriate dimensions. As
    an application of our results, we analyze a natural simplification scheme for
    Reeb graphs, and show that persistent features in Reeb graph remains persistent
    under simplification. Understanding the stability of important features of the
    Reeb graph under simplification is an interesting problem on its own right, and
    critical to the practical usage of Reeb graphs. Copyright is held by the owner/author(s).
acknowledgement: National Science Foundation under grants CCF-1319406, CCF-1116258.
author:
- first_name: Ulrich
  full_name: Bauer, Ulrich
  id: 2ADD483A-F248-11E8-B48F-1D18A9856A87
  last_name: Bauer
  orcid: 0000-0002-9683-0724
- first_name: Xiaoyin
  full_name: Ge, Xiaoyin
  last_name: Ge
- first_name: Yusu
  full_name: Wang, Yusu
  last_name: Wang
citation:
  ama: 'Bauer U, Ge X, Wang Y. Measuring distance between Reeb graphs. In: <i>Proceedings
    of the Annual Symposium on Computational Geometry</i>. ACM; 2014:464-473. doi:<a
    href="https://doi.org/10.1145/2582112.2582169">10.1145/2582112.2582169</a>'
  apa: 'Bauer, U., Ge, X., &#38; Wang, Y. (2014). Measuring distance between Reeb
    graphs. In <i>Proceedings of the Annual Symposium on Computational Geometry</i>
    (pp. 464–473). Kyoto, Japan: ACM. <a href="https://doi.org/10.1145/2582112.2582169">https://doi.org/10.1145/2582112.2582169</a>'
  chicago: Bauer, Ulrich, Xiaoyin Ge, and Yusu Wang. “Measuring Distance between Reeb
    Graphs.” In <i>Proceedings of the Annual Symposium on Computational Geometry</i>,
    464–73. ACM, 2014. <a href="https://doi.org/10.1145/2582112.2582169">https://doi.org/10.1145/2582112.2582169</a>.
  ieee: U. Bauer, X. Ge, and Y. Wang, “Measuring distance between Reeb graphs,” in
    <i>Proceedings of the Annual Symposium on Computational Geometry</i>, Kyoto, Japan,
    2014, pp. 464–473.
  ista: 'Bauer U, Ge X, Wang Y. 2014. Measuring distance between Reeb graphs. Proceedings
    of the Annual Symposium on Computational Geometry. SoCG: Symposium on Computational
    Geometry, 464–473.'
  mla: Bauer, Ulrich, et al. “Measuring Distance between Reeb Graphs.” <i>Proceedings
    of the Annual Symposium on Computational Geometry</i>, ACM, 2014, pp. 464–73,
    doi:<a href="https://doi.org/10.1145/2582112.2582169">10.1145/2582112.2582169</a>.
  short: U. Bauer, X. Ge, Y. Wang, in:, Proceedings of the Annual Symposium on Computational
    Geometry, ACM, 2014, pp. 464–473.
conference:
  end_date: 2014-06-11
  location: Kyoto, Japan
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2014-06-08
date_created: 2018-12-11T11:56:02Z
date_published: 2014-06-01T00:00:00Z
date_updated: 2021-01-12T06:55:39Z
day: '01'
department:
- _id: HeEd
doi: 10.1145/2582112.2582169
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1307.2839
month: '06'
oa: 1
oa_version: Submitted Version
page: 464 - 473
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '318493'
  name: Topological Complex Systems
publication: Proceedings of the Annual Symposium on Computational Geometry
publication_status: published
publisher: ACM
publist_id: '4850'
quality_controlled: '1'
scopus_import: 1
status: public
title: Measuring distance between Reeb graphs
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
