---
_id: '14201'
abstract:
- lang: eng
  text: "Variational inference is a popular technique to approximate a possibly\r\nintractable
    Bayesian posterior with a more tractable one. Recently, boosting\r\nvariational
    inference has been proposed as a new paradigm to approximate the\r\nposterior
    by a mixture of densities by greedily adding components to the\r\nmixture. However,
    as is the case with many other variational inference\r\nalgorithms, its theoretical
    properties have not been studied. In the present\r\nwork, we study the convergence
    properties of this approach from a modern\r\noptimization viewpoint by establishing
    connections to the classic Frank-Wolfe\r\nalgorithm. Our analyses yields novel
    theoretical insights regarding the\r\nsufficient conditions for convergence, explicit
    rates, and algorithmic\r\nsimplifications. Since a lot of focus in previous works
    for variational\r\ninference has been on tractability, our work is especially
    important as a much\r\nneeded attempt to bridge the gap between probabilistic
    models and their\r\ncorresponding theoretical properties."
alternative_title:
- PMLR
article_processing_charge: No
arxiv: 1
author:
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Rajiv
  full_name: Khanna, Rajiv
  last_name: Khanna
- first_name: Joydeep
  full_name: Ghosh, Joydeep
  last_name: Ghosh
- first_name: Gunnar
  full_name: Rätsch, Gunnar
  last_name: Rätsch
citation:
  ama: 'Locatello F, Khanna R, Ghosh J, Rätsch G. Boosting variational inference:
    An optimization perspective. In: <i>Proceedings of the 21st International Conference
    on Artificial Intelligence and Statistics</i>. Vol 84. ML Research Press; 2018:464-472.'
  apa: 'Locatello, F., Khanna, R., Ghosh, J., &#38; Rätsch, G. (2018). Boosting variational
    inference: An optimization perspective. In <i>Proceedings of the 21st International
    Conference on Artificial Intelligence and Statistics</i> (Vol. 84, pp. 464–472).
    Playa Blanca, Lanzarote: ML Research Press.'
  chicago: 'Locatello, Francesco, Rajiv Khanna, Joydeep Ghosh, and Gunnar Rätsch.
    “Boosting Variational Inference: An Optimization Perspective.” In <i>Proceedings
    of the 21st International Conference on Artificial Intelligence and Statistics</i>,
    84:464–72. ML Research Press, 2018.'
  ieee: 'F. Locatello, R. Khanna, J. Ghosh, and G. Rätsch, “Boosting variational inference:
    An optimization perspective,” in <i>Proceedings of the 21st International Conference
    on Artificial Intelligence and Statistics</i>, Playa Blanca, Lanzarote, 2018,
    vol. 84, pp. 464–472.'
  ista: 'Locatello F, Khanna R, Ghosh J, Rätsch G. 2018. Boosting variational inference:
    An optimization perspective. Proceedings of the 21st International Conference
    on Artificial Intelligence and Statistics. AISTATS: Conference on Artificial Intelligence
    and Statistics, PMLR, vol. 84, 464–472.'
  mla: 'Locatello, Francesco, et al. “Boosting Variational Inference: An Optimization
    Perspective.” <i>Proceedings of the 21st International Conference on Artificial
    Intelligence and Statistics</i>, vol. 84, ML Research Press, 2018, pp. 464–72.'
  short: F. Locatello, R. Khanna, J. Ghosh, G. Rätsch, in:, Proceedings of the 21st
    International Conference on Artificial Intelligence and Statistics, ML Research
    Press, 2018, pp. 464–472.
conference:
  end_date: 2018-04-11
  location: Playa Blanca, Lanzarote
  name: 'AISTATS: Conference on Artificial Intelligence and Statistics'
  start_date: 2018-04-09
date_created: 2023-08-22T14:15:20Z
date_published: 2018-04-15T00:00:00Z
date_updated: 2023-09-13T07:52:40Z
day: '15'
department:
- _id: FrLo
extern: '1'
external_id:
  arxiv:
  - '1708.01733'
intvolume: '        84'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1708.01733
month: '04'
oa: 1
oa_version: Preprint
page: 464-472
publication: Proceedings of the 21st International Conference on Artificial Intelligence
  and Statistics
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Boosting variational inference: An optimization perspective'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 84
year: '2018'
...
---
_id: '14202'
abstract:
- lang: eng
  text: "Approximating a probability density in a tractable manner is a central task\r\nin
    Bayesian statistics. Variational Inference (VI) is a popular technique that\r\nachieves
    tractability by choosing a relatively simple variational family.\r\nBorrowing
    ideas from the classic boosting framework, recent approaches attempt\r\nto \\emph{boost}
    VI by replacing the selection of a single density with a\r\ngreedily constructed
    mixture of densities. In order to guarantee convergence,\r\nprevious works impose
    stringent assumptions that require significant effort for\r\npractitioners. Specifically,
    they require a custom implementation of the greedy\r\nstep (called the LMO) for
    every probabilistic model with respect to an\r\nunnatural variational family of
    truncated distributions. Our work fixes these\r\nissues with novel theoretical
    and algorithmic insights. On the theoretical\r\nside, we show that boosting VI
    satisfies a relaxed smoothness assumption which\r\nis sufficient for the convergence
    of the functional Frank-Wolfe (FW) algorithm.\r\nFurthermore, we rephrase the
    LMO problem and propose to maximize the Residual\r\nELBO (RELBO) which replaces
    the standard ELBO optimization in VI. These\r\ntheoretical enhancements allow
    for black box implementation of the boosting\r\nsubroutine. Finally, we present
    a stopping criterion drawn from the duality gap\r\nin the classic FW analyses
    and exhaustive experiments to illustrate the\r\nusefulness of our theoretical
    and algorithmic contributions."
article_processing_charge: No
arxiv: 1
author:
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Gideon
  full_name: Dresdner, Gideon
  last_name: Dresdner
- first_name: Rajiv
  full_name: Khanna, Rajiv
  last_name: Khanna
- first_name: Isabel
  full_name: Valera, Isabel
  last_name: Valera
- first_name: Gunnar
  full_name: Rätsch, Gunnar
  last_name: Rätsch
citation:
  ama: 'Locatello F, Dresdner G, Khanna R, Valera I, Rätsch G. Boosting black box
    variational inference. In: <i>Advances in Neural Information Processing Systems</i>.
    Vol 31. Neural Information Processing Systems Foundation; 2018.'
  apa: 'Locatello, F., Dresdner, G., Khanna, R., Valera, I., &#38; Rätsch, G. (2018).
    Boosting black box variational inference. In <i>Advances in Neural Information
    Processing Systems</i> (Vol. 31). Montreal, Canada: Neural Information Processing
    Systems Foundation.'
  chicago: Locatello, Francesco, Gideon Dresdner, Rajiv Khanna, Isabel Valera, and
    Gunnar Rätsch. “Boosting Black Box Variational Inference.” In <i>Advances in Neural
    Information Processing Systems</i>, Vol. 31. Neural Information Processing Systems
    Foundation, 2018.
  ieee: F. Locatello, G. Dresdner, R. Khanna, I. Valera, and G. Rätsch, “Boosting
    black box variational inference,” in <i>Advances in Neural Information Processing
    Systems</i>, Montreal, Canada, 2018, vol. 31.
  ista: 'Locatello F, Dresdner G, Khanna R, Valera I, Rätsch G. 2018. Boosting black
    box variational inference. Advances in Neural Information Processing Systems.
    NeurIPS: Neural Information Processing Systems vol. 31.'
  mla: Locatello, Francesco, et al. “Boosting Black Box Variational Inference.” <i>Advances
    in Neural Information Processing Systems</i>, vol. 31, Neural Information Processing
    Systems Foundation, 2018.
  short: F. Locatello, G. Dresdner, R. Khanna, I. Valera, G. Rätsch, in:, Advances
    in Neural Information Processing Systems, Neural Information Processing Systems
    Foundation, 2018.
conference:
  end_date: 2018-12-08
  location: Montreal, Canada
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2018-12-03
date_created: 2023-08-22T14:15:40Z
date_published: 2018-06-06T00:00:00Z
date_updated: 2023-09-13T07:38:24Z
day: '06'
department:
- _id: FrLo
extern: '1'
external_id:
  arxiv:
  - '1806.02185'
intvolume: '        31'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1806.02185
month: '06'
oa: 1
oa_version: Preprint
publication: Advances in Neural Information Processing Systems
publication_identifier:
  eissn:
  - 1049-5258
  isbn:
  - '9781510884472'
publication_status: published
publisher: Neural Information Processing Systems Foundation
quality_controlled: '1'
scopus_import: '1'
status: public
title: Boosting black box variational inference
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 31
year: '2018'
...
---
_id: '14203'
abstract:
- lang: eng
  text: We propose a conditional gradient framework for a composite convex minimization
    template with broad applications. Our approach combines smoothing and homotopy
    techniques under the CGM framework, and provably achieves the optimal O(1/k−−√)
    convergence rate. We demonstrate that the same rate holds if the linear subproblems
    are solved approximately with additive or multiplicative error. In contrast with
    the relevant work, we are able to characterize the convergence when the non-smooth
    term is an indicator function. Specific applications of our framework include
    the non-smooth minimization, semidefinite programming, and minimization with linear
    inclusion constraints over a compact domain. Numerical evidence demonstrates the
    benefits of our framework.
alternative_title:
- PMLR
article_processing_charge: No
arxiv: 1
author:
- first_name: Alp
  full_name: Yurtsever, Alp
  last_name: Yurtsever
- first_name: Olivier
  full_name: Fercoq, Olivier
  last_name: Fercoq
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Volkan
  full_name: Cevher, Volkan
  last_name: Cevher
citation:
  ama: 'Yurtsever A, Fercoq O, Locatello F, Cevher V. A conditional gradient framework
    for composite convex minimization with applications to semidefinite programming.
    In: <i>Proceedings of the 35th International Conference on Machine Learning</i>.
    Vol 80. ML Research Press; 2018:5727-5736.'
  apa: 'Yurtsever, A., Fercoq, O., Locatello, F., &#38; Cevher, V. (2018). A conditional
    gradient framework for composite convex minimization with applications to semidefinite
    programming. In <i>Proceedings of the 35th International Conference on Machine
    Learning</i> (Vol. 80, pp. 5727–5736). Stockholm, Sweden: ML Research Press.'
  chicago: Yurtsever, Alp, Olivier Fercoq, Francesco Locatello, and Volkan Cevher.
    “A Conditional Gradient Framework for Composite Convex Minimization with Applications
    to Semidefinite Programming.” In <i>Proceedings of the 35th International Conference
    on Machine Learning</i>, 80:5727–36. ML Research Press, 2018.
  ieee: A. Yurtsever, O. Fercoq, F. Locatello, and V. Cevher, “A conditional gradient
    framework for composite convex minimization with applications to semidefinite
    programming,” in <i>Proceedings of the 35th International Conference on Machine
    Learning</i>, Stockholm, Sweden, 2018, vol. 80, pp. 5727–5736.
  ista: 'Yurtsever A, Fercoq O, Locatello F, Cevher V. 2018. A conditional gradient
    framework for composite convex minimization with applications to semidefinite
    programming. Proceedings of the 35th International Conference on Machine Learning.
    ICML: International Conference on Machine Learning, PMLR, vol. 80, 5727–5736.'
  mla: Yurtsever, Alp, et al. “A Conditional Gradient Framework for Composite Convex
    Minimization with Applications to Semidefinite Programming.” <i>Proceedings of
    the 35th International Conference on Machine Learning</i>, vol. 80, ML Research
    Press, 2018, pp. 5727–36.
  short: A. Yurtsever, O. Fercoq, F. Locatello, V. Cevher, in:, Proceedings of the
    35th International Conference on Machine Learning, ML Research Press, 2018, pp.
    5727–5736.
conference:
  end_date: 2018-07-15
  location: Stockholm, Sweden
  name: 'ICML: International Conference on Machine Learning'
  start_date: 2018-07-10
date_created: 2023-08-22T14:16:01Z
date_published: 2018-07-15T00:00:00Z
date_updated: 2023-09-13T08:13:39Z
day: '15'
department:
- _id: FrLo
extern: '1'
external_id:
  arxiv:
  - '1804.08544'
intvolume: '        80'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1804.08544
month: '07'
oa: 1
oa_version: Preprint
page: 5727-5736
publication: Proceedings of the 35th International Conference on Machine Learning
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
status: public
title: A conditional gradient framework for composite convex minimization with applications
  to semidefinite programming
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 80
year: '2018'
...
---
_id: '14204'
abstract:
- lang: eng
  text: Two popular examples of first-order optimization methods over linear spaces
    are coordinate descent and matching pursuit algorithms, with their randomized
    variants. While the former targets the optimization by moving along coordinates,
    the latter considers a generalized notion of directions. Exploiting the connection
    between the two algorithms, we present a unified analysis of both, providing affine
    invariant sublinear O(1/t) rates on smooth objectives and linear convergence on
    strongly convex objectives. As a byproduct of our affine invariant analysis of
    matching pursuit, our rates for steepest coordinate descent are the tightest known.
    Furthermore, we show the first accelerated convergence rate O(1/t2) for matching
    pursuit and steepest coordinate descent on convex objectives.
alternative_title:
- PMLR
article_processing_charge: No
arxiv: 1
author:
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Anant
  full_name: Raj, Anant
  last_name: Raj
- first_name: Sai Praneeth
  full_name: Karimireddy, Sai Praneeth
  last_name: Karimireddy
- first_name: Gunnar
  full_name: Rätsch, Gunnar
  last_name: Rätsch
- first_name: Bernhard
  full_name: Schölkopf, Bernhard
  last_name: Schölkopf
- first_name: Sebastian U.
  full_name: Stich, Sebastian U.
  last_name: Stich
- first_name: Martin
  full_name: Jaggi, Martin
  last_name: Jaggi
citation:
  ama: 'Locatello F, Raj A, Karimireddy SP, et al. On matching pursuit and coordinate
    descent. In: <i>Proceedings of the 35th International Conference on Machine Learning</i>.
    Vol 80. ML Research Press; 2018:3198-3207.'
  apa: Locatello, F., Raj, A., Karimireddy, S. P., Rätsch, G., Schölkopf, B., Stich,
    S. U., &#38; Jaggi, M. (2018). On matching pursuit and coordinate descent. In
    <i>Proceedings of the 35th International Conference on Machine Learning</i> (Vol.
    80, pp. 3198–3207). ML Research Press.
  chicago: Locatello, Francesco, Anant Raj, Sai Praneeth Karimireddy, Gunnar Rätsch,
    Bernhard Schölkopf, Sebastian U. Stich, and Martin Jaggi. “On Matching Pursuit
    and Coordinate Descent.” In <i>Proceedings of the 35th International Conference
    on Machine Learning</i>, 80:3198–3207. ML Research Press, 2018.
  ieee: F. Locatello <i>et al.</i>, “On matching pursuit and coordinate descent,”
    in <i>Proceedings of the 35th International Conference on Machine Learning</i>,
    2018, vol. 80, pp. 3198–3207.
  ista: Locatello F, Raj A, Karimireddy SP, Rätsch G, Schölkopf B, Stich SU, Jaggi
    M. 2018. On matching pursuit and coordinate descent. Proceedings of the 35th International
    Conference on Machine Learning. , PMLR, vol. 80, 3198–3207.
  mla: Locatello, Francesco, et al. “On Matching Pursuit and Coordinate Descent.”
    <i>Proceedings of the 35th International Conference on Machine Learning</i>, vol.
    80, ML Research Press, 2018, pp. 3198–207.
  short: F. Locatello, A. Raj, S.P. Karimireddy, G. Rätsch, B. Schölkopf, S.U. Stich,
    M. Jaggi, in:, Proceedings of the 35th International Conference on Machine Learning,
    ML Research Press, 2018, pp. 3198–3207.
date_created: 2023-08-22T14:16:25Z
date_published: 2018-07-01T00:00:00Z
date_updated: 2023-09-13T08:19:05Z
day: '01'
department:
- _id: FrLo
extern: '1'
external_id:
  arxiv:
  - '1803.09539'
intvolume: '        80'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1803.09539
month: '07'
oa: 1
oa_version: Preprint
page: 3198-3207
publication: Proceedings of the 35th International Conference on Machine Learning
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: On matching pursuit and coordinate descent
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 80
year: '2018'
...
---
_id: '14224'
abstract:
- lang: eng
  text: Clustering is a cornerstone of unsupervised learning which can be thought
    as disentangling multiple generative mechanisms underlying the data. In this paper
    we introduce an algorithmic framework to train mixtures of implicit generative
    models which we particularize for variational autoencoders. Relying on an additional
    set of discriminators, we propose a competitive procedure in which the models
    only need to approximate the portion of the data distribution from which they
    can produce realistic samples. As a byproduct, each model is simpler to train,
    and a clustering interpretation arises naturally from the partitioning of the
    training points among the models. We empirically show that our approach splits
    the training distribution in a reasonable way and increases the quality of the
    generated samples.
article_processing_charge: No
arxiv: 1
author:
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Damien
  full_name: Vincent, Damien
  last_name: Vincent
- first_name: Ilya
  full_name: Tolstikhin, Ilya
  last_name: Tolstikhin
- first_name: Gunnar
  full_name: Ratsch, Gunnar
  last_name: Ratsch
- first_name: Sylvain
  full_name: Gelly, Sylvain
  last_name: Gelly
- first_name: Bernhard
  full_name: Scholkopf, Bernhard
  last_name: Scholkopf
citation:
  ama: 'Locatello F, Vincent D, Tolstikhin I, Ratsch G, Gelly S, Scholkopf B. Clustering
    meets implicit generative models. In: <i>6th International Conference on Learning
    Representations</i>. ; 2018.'
  apa: Locatello, F., Vincent, D., Tolstikhin, I., Ratsch, G., Gelly, S., &#38; Scholkopf,
    B. (2018). Clustering meets implicit generative models. In <i>6th International
    Conference on Learning Representations</i>. Vancouver, Canada.
  chicago: Locatello, Francesco, Damien Vincent, Ilya Tolstikhin, Gunnar Ratsch, Sylvain
    Gelly, and Bernhard Scholkopf. “Clustering Meets Implicit Generative Models.”
    In <i>6th International Conference on Learning Representations</i>, 2018.
  ieee: F. Locatello, D. Vincent, I. Tolstikhin, G. Ratsch, S. Gelly, and B. Scholkopf,
    “Clustering meets implicit generative models,” in <i>6th International Conference
    on Learning Representations</i>, Vancouver, Canada, 2018.
  ista: Locatello F, Vincent D, Tolstikhin I, Ratsch G, Gelly S, Scholkopf B. 2018.
    Clustering meets implicit generative models. 6th International Conference on Learning
    Representations. International Conference on Machine Learning.
  mla: Locatello, Francesco, et al. “Clustering Meets Implicit Generative Models.”
    <i>6th International Conference on Learning Representations</i>, 2018.
  short: F. Locatello, D. Vincent, I. Tolstikhin, G. Ratsch, S. Gelly, B. Scholkopf,
    in:, 6th International Conference on Learning Representations, 2018.
conference:
  end_date: 2018-05-03
  location: Vancouver, Canada
  name: International Conference on Machine Learning
  start_date: 2018-04-30
date_created: 2023-08-22T14:25:34Z
date_published: 2018-05-01T00:00:00Z
date_updated: 2023-09-13T09:08:24Z
day: '01'
department:
- _id: FrLo
extern: '1'
external_id:
  arxiv:
  - '1804.11130'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1804.11130
month: '05'
oa: 1
oa_version: Preprint
publication: 6th International Conference on Learning Representations
publication_status: published
quality_controlled: '1'
scopus_import: '1'
status: public
title: Clustering meets implicit generative models
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '143'
abstract:
- lang: eng
  text: 'Vector Addition Systems with States (VASS) provide a well-known and fundamental
    model for the analysis of concurrent processes, parameterized systems, and are
    also used as abstract models of programs in resource bound analysis. In this paper
    we study the problem of obtaining asymptotic bounds on the termination time of
    a given VASS. In particular, we focus on the practically important case of obtaining
    polynomial bounds on termination time. Our main contributions are as follows:
    First, we present a polynomial-time algorithm for deciding whether a given VASS
    has a linear asymptotic complexity. We also show that if the complexity of a VASS
    is not linear, it is at least quadratic. Second, we classify VASS according to
    quantitative properties of their cycles. We show that certain singularities in
    these properties are the key reason for non-polynomial asymptotic complexity of
    VASS. In absence of singularities, we show that the asymptotic complexity is always
    polynomial and of the form Θ(nk), for some integer k d, where d is the dimension
    of the VASS. We present a polynomial-time algorithm computing the optimal k. For
    general VASS, the same algorithm, which is based on a complete technique for the
    construction of ranking functions in VASS, produces a valid lower bound, i.e.,
    a k such that the termination complexity is (nk). Our results are based on new
    insights into the geometry of VASS dynamics, which hold the potential for further
    applicability to VASS analysis.'
alternative_title:
- ACM/IEEE Symposium on Logic in Computer Science
article_processing_charge: No
author:
- first_name: Tomáš
  full_name: Brázdil, Tomáš
  last_name: Brázdil
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Antonín
  full_name: Kučera, Antonín
  last_name: Kučera
- first_name: Petr
  full_name: Novotny, Petr
  id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
  last_name: Novotny
- first_name: Dominik
  full_name: Velan, Dominik
  last_name: Velan
- first_name: Florian
  full_name: Zuleger, Florian
  last_name: Zuleger
citation:
  ama: 'Brázdil T, Chatterjee K, Kučera A, Novotný P, Velan D, Zuleger F. Efficient
    algorithms for asymptotic bounds on termination time in VASS. In: Vol F138033.
    IEEE; 2018:185-194. doi:<a href="https://doi.org/10.1145/3209108.3209191">10.1145/3209108.3209191</a>'
  apa: 'Brázdil, T., Chatterjee, K., Kučera, A., Novotný, P., Velan, D., &#38; Zuleger,
    F. (2018). Efficient algorithms for asymptotic bounds on termination time in VASS
    (Vol. F138033, pp. 185–194). Presented at the LICS: Logic in Computer Science,
    Oxford, United Kingdom: IEEE. <a href="https://doi.org/10.1145/3209108.3209191">https://doi.org/10.1145/3209108.3209191</a>'
  chicago: Brázdil, Tomáš, Krishnendu Chatterjee, Antonín Kučera, Petr Novotný, Dominik
    Velan, and Florian Zuleger. “Efficient Algorithms for Asymptotic Bounds on Termination
    Time in VASS,” F138033:185–94. IEEE, 2018. <a href="https://doi.org/10.1145/3209108.3209191">https://doi.org/10.1145/3209108.3209191</a>.
  ieee: 'T. Brázdil, K. Chatterjee, A. Kučera, P. Novotný, D. Velan, and F. Zuleger,
    “Efficient algorithms for asymptotic bounds on termination time in VASS,” presented
    at the LICS: Logic in Computer Science, Oxford, United Kingdom, 2018, vol. F138033,
    pp. 185–194.'
  ista: 'Brázdil T, Chatterjee K, Kučera A, Novotný P, Velan D, Zuleger F. 2018. Efficient
    algorithms for asymptotic bounds on termination time in VASS. LICS: Logic in Computer
    Science, ACM/IEEE Symposium on Logic in Computer Science, vol. F138033, 185–194.'
  mla: Brázdil, Tomáš, et al. <i>Efficient Algorithms for Asymptotic Bounds on Termination
    Time in VASS</i>. Vol. F138033, IEEE, 2018, pp. 185–94, doi:<a href="https://doi.org/10.1145/3209108.3209191">10.1145/3209108.3209191</a>.
  short: T. Brázdil, K. Chatterjee, A. Kučera, P. Novotný, D. Velan, F. Zuleger, in:,
    IEEE, 2018, pp. 185–194.
conference:
  end_date: 2018-07-12
  location: Oxford, United Kingdom
  name: 'LICS: Logic in Computer Science'
  start_date: 2018-07-09
date_created: 2018-12-11T11:44:51Z
date_published: 2018-07-09T00:00:00Z
date_updated: 2025-06-02T08:53:48Z
day: '09'
department:
- _id: KrCh
doi: 10.1145/3209108.3209191
ec_funded: 1
external_id:
  isi:
  - '000545262800020'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1804.10985
month: '07'
oa: 1
oa_version: Preprint
page: 185 - 194
project:
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
  grant_number: ICT15-003
  name: Efficient Algorithms for Computer Aided Verification
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication_identifier:
  isbn:
  - 978-1-4503-5583-4
publication_status: published
publisher: IEEE
publist_id: '7780'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Efficient algorithms for asymptotic bounds on termination time in VASS
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: F138033
year: '2018'
...
---
_id: '913'
abstract:
- lang: eng
  text: Coordinated cell polarization in developing tissues is a recurrent theme in
    multicellular organisms. In plants, a directional distribution of the plant hormone
    auxin is at the core of many developmental programs. A feedback regulation of
    auxin on the polarized localization of PIN auxin transporters in individual cells
    has been proposed as a self-organizing mechanism for coordinated tissue polarization,
    but the molecular mechanisms linking auxin signalling to PIN-dependent auxin transport
    remain unknown. We performed a microarray-based approach to find regulators of
    the auxin-induced PIN relocation in the Arabidopsis thaliana root. We identified
    a subset of a family of phosphatidylinositol transfer proteins (PITP), the PATELLINs
    (PATL). Here, we show that PATLs are expressed in partially overlapping cells
    types in different tissues going through mitosis or initiating differentiation
    programs. PATLs are plasma membrane-associated proteins accumulated in Arabidopsis
    embryos, primary roots, lateral root primordia, and developing stomata. Higher
    order patl mutants display reduced PIN1 repolarization in response to auxin, shorter
    root apical meristem, and drastic defects in embryo and seedling development.
    This suggests PATLs redundantly play a crucial role in polarity and patterning
    in Arabidopsis.
article_number: jcs.204198
article_processing_charge: No
author:
- first_name: Ricardo
  full_name: Tejos, Ricardo
  last_name: Tejos
- first_name: Cecilia
  full_name: Rodríguez Furlán, Cecilia
  last_name: Rodríguez Furlán
- first_name: Maciek
  full_name: Adamowski, Maciek
  id: 45F536D2-F248-11E8-B48F-1D18A9856A87
  last_name: Adamowski
  orcid: 0000-0001-6463-5257
- first_name: Michael
  full_name: Sauer, Michael
  last_name: Sauer
- first_name: Lorena
  full_name: Norambuena, Lorena
  last_name: Norambuena
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Tejos R, Rodríguez Furlán C, Adamowski M, Sauer M, Norambuena L, Friml J. PATELLINS
    are regulators of auxin mediated PIN1 relocation and plant development in Arabidopsis
    thaliana. <i>Journal of Cell Science</i>. 2018;131(2). doi:<a href="https://doi.org/10.1242/jcs.204198">10.1242/jcs.204198</a>
  apa: Tejos, R., Rodríguez Furlán, C., Adamowski, M., Sauer, M., Norambuena, L.,
    &#38; Friml, J. (2018). PATELLINS are regulators of auxin mediated PIN1 relocation
    and plant development in Arabidopsis thaliana. <i>Journal of Cell Science</i>.
    Company of Biologists. <a href="https://doi.org/10.1242/jcs.204198">https://doi.org/10.1242/jcs.204198</a>
  chicago: Tejos, Ricardo, Cecilia Rodríguez Furlán, Maciek Adamowski, Michael Sauer,
    Lorena Norambuena, and Jiří Friml. “PATELLINS Are Regulators of Auxin Mediated
    PIN1 Relocation and Plant Development in Arabidopsis Thaliana.” <i>Journal of
    Cell Science</i>. Company of Biologists, 2018. <a href="https://doi.org/10.1242/jcs.204198">https://doi.org/10.1242/jcs.204198</a>.
  ieee: R. Tejos, C. Rodríguez Furlán, M. Adamowski, M. Sauer, L. Norambuena, and
    J. Friml, “PATELLINS are regulators of auxin mediated PIN1 relocation and plant
    development in Arabidopsis thaliana,” <i>Journal of Cell Science</i>, vol. 131,
    no. 2. Company of Biologists, 2018.
  ista: Tejos R, Rodríguez Furlán C, Adamowski M, Sauer M, Norambuena L, Friml J.
    2018. PATELLINS are regulators of auxin mediated PIN1 relocation and plant development
    in Arabidopsis thaliana. Journal of Cell Science. 131(2), jcs. 204198.
  mla: Tejos, Ricardo, et al. “PATELLINS Are Regulators of Auxin Mediated PIN1 Relocation
    and Plant Development in Arabidopsis Thaliana.” <i>Journal of Cell Science</i>,
    vol. 131, no. 2, jcs. 204198, Company of Biologists, 2018, doi:<a href="https://doi.org/10.1242/jcs.204198">10.1242/jcs.204198</a>.
  short: R. Tejos, C. Rodríguez Furlán, M. Adamowski, M. Sauer, L. Norambuena, J.
    Friml, Journal of Cell Science 131 (2018).
date_created: 2018-12-11T11:49:10Z
date_published: 2018-01-29T00:00:00Z
date_updated: 2025-05-07T11:12:29Z
day: '29'
ddc:
- '581'
department:
- _id: JiFr
doi: 10.1242/jcs.204198
ec_funded: 1
external_id:
  isi:
  - '000424842400019'
file:
- access_level: open_access
  checksum: bf156c20a4f117b4b932370d54cbac8c
  content_type: application/pdf
  creator: dernst
  date_created: 2019-04-12T08:46:32Z
  date_updated: 2020-07-14T12:48:15Z
  file_id: '6299'
  file_name: 2017_adamowski_PATELLINS_are.pdf
  file_size: 14925985
  relation: main_file
file_date_updated: 2020-07-14T12:48:15Z
has_accepted_license: '1'
intvolume: '       131'
isi: 1
issue: '2'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: Journal of Cell Science
publication_identifier:
  issn:
  - '00219533'
publication_status: published
publisher: Company of Biologists
publist_id: '6530'
pubrep_id: '988'
quality_controlled: '1'
scopus_import: '1'
status: public
title: PATELLINS are regulators of auxin mediated PIN1 relocation and plant development
  in Arabidopsis thaliana
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 131
year: '2018'
...
---
_id: '9229'
alternative_title:
- Molecular and cellular neuroscience
article_processing_charge: No
article_type: letter_note
author:
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
citation:
  ama: Danzl JG. Diffraction-unlimited optical imaging for synaptic physiology. <i>Opera
    Medica et Physiologica</i>. 2018;4(S1):11. doi:<a href="https://doi.org/10.20388/omp2018.00s1.001">10.20388/omp2018.00s1.001</a>
  apa: Danzl, J. G. (2018). Diffraction-unlimited optical imaging for synaptic physiology.
    <i>Opera Medica et Physiologica</i>. Lobachevsky State University of Nizhny Novgorod.
    <a href="https://doi.org/10.20388/omp2018.00s1.001">https://doi.org/10.20388/omp2018.00s1.001</a>
  chicago: Danzl, Johann G. “Diffraction-Unlimited Optical Imaging for Synaptic Physiology.”
    <i>Opera Medica et Physiologica</i>. Lobachevsky State University of Nizhny Novgorod,
    2018. <a href="https://doi.org/10.20388/omp2018.00s1.001">https://doi.org/10.20388/omp2018.00s1.001</a>.
  ieee: J. G. Danzl, “Diffraction-unlimited optical imaging for synaptic physiology,”
    <i>Opera Medica et Physiologica</i>, vol. 4, no. S1. Lobachevsky State University
    of Nizhny Novgorod, p. 11, 2018.
  ista: Danzl JG. 2018. Diffraction-unlimited optical imaging for synaptic physiology.
    Opera Medica et Physiologica. 4(S1), 11.
  mla: Danzl, Johann G. “Diffraction-Unlimited Optical Imaging for Synaptic Physiology.”
    <i>Opera Medica et Physiologica</i>, vol. 4, no. S1, Lobachevsky State University
    of Nizhny Novgorod, 2018, p. 11, doi:<a href="https://doi.org/10.20388/omp2018.00s1.001">10.20388/omp2018.00s1.001</a>.
  short: J.G. Danzl, Opera Medica et Physiologica 4 (2018) 11.
date_created: 2021-03-07T23:01:25Z
date_published: 2018-06-30T00:00:00Z
date_updated: 2021-12-03T07:31:05Z
day: '30'
department:
- _id: JoDa
doi: 10.20388/omp2018.00s1.001
intvolume: '         4'
issue: S1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://operamedphys.org/content/molecular-and-cellular-neuroscience
month: '06'
oa: 1
oa_version: Published Version
page: '11'
publication: Opera Medica et Physiologica
publication_identifier:
  eissn:
  - 2500-2295
  issn:
  - 2500-2287
publication_status: published
publisher: Lobachevsky State University of Nizhny Novgorod
quality_controlled: '1'
scopus_import: '1'
status: public
title: Diffraction-unlimited optical imaging for synaptic physiology
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 4
year: '2018'
...
---
_id: '9471'
abstract:
- lang: eng
  text: The DEMETER (DME) DNA glycosylase catalyzes genome-wide DNA demethylation
    and is required for endosperm genomic imprinting and embryo viability. Targets
    of DME-mediated DNA demethylation reside in small, euchromatic, AT-rich transposons
    and at the boundaries of large transposons, but how DME interacts with these diverse
    chromatin states is unknown. The STRUCTURE SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)
    subunit of the chromatin remodeler FACT (facilitates chromatin transactions),
    was previously shown to be involved in the DME-dependent regulation of genomic
    imprinting in Arabidopsis endosperm. Therefore, to investigate the interaction
    between DME and chromatin, we focused on the activity of the two FACT subunits,
    SSRP1 and SUPPRESSOR of TY16 (SPT16), during reproduction in Arabidopsis. We found
    that FACT colocalizes with nuclear DME in vivo, and that DME has two classes of
    target sites, the first being euchromatic and accessible to DME, but the second,
    representing over half of DME targets, requiring the action of FACT for DME-mediated
    DNA demethylation genome-wide. Our results show that the FACT-dependent DME targets
    are GC-rich heterochromatin domains with high nucleosome occupancy enriched with
    H3K9me2 and H3K27me1. Further, we demonstrate that heterochromatin-associated
    linker histone H1 specifically mediates the requirement for FACT at a subset of
    DME-target loci. Overall, our results demonstrate that FACT is required for DME
    targeting by facilitating its access to heterochromatin.
article_processing_charge: No
article_type: original
author:
- first_name: Jennifer M.
  full_name: Frost, Jennifer M.
  last_name: Frost
- first_name: M. Yvonne
  full_name: Kim, M. Yvonne
  last_name: Kim
- first_name: Guen Tae
  full_name: Park, Guen Tae
  last_name: Park
- first_name: Ping-Hung
  full_name: Hsieh, Ping-Hung
  last_name: Hsieh
- first_name: Miyuki
  full_name: Nakamura, Miyuki
  last_name: Nakamura
- first_name: Samuel J. H.
  full_name: Lin, Samuel J. H.
  last_name: Lin
- first_name: Hyunjin
  full_name: Yoo, Hyunjin
  last_name: Yoo
- first_name: Jaemyung
  full_name: Choi, Jaemyung
  last_name: Choi
- first_name: Yoko
  full_name: Ikeda, Yoko
  last_name: Ikeda
- first_name: Tetsu
  full_name: Kinoshita, Tetsu
  last_name: Kinoshita
- first_name: Yeonhee
  full_name: Choi, Yeonhee
  last_name: Choi
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
- first_name: Robert L.
  full_name: Fischer, Robert L.
  last_name: Fischer
citation:
  ama: Frost JM, Kim MY, Park GT, et al. FACT complex is required for DNA demethylation
    at heterochromatin during reproduction in Arabidopsis. <i>Proceedings of the National
    Academy of Sciences</i>. 2018;115(20):E4720-E4729. doi:<a href="https://doi.org/10.1073/pnas.1713333115">10.1073/pnas.1713333115</a>
  apa: Frost, J. M., Kim, M. Y., Park, G. T., Hsieh, P.-H., Nakamura, M., Lin, S.
    J. H., … Fischer, R. L. (2018). FACT complex is required for DNA demethylation
    at heterochromatin during reproduction in Arabidopsis. <i>Proceedings of the National
    Academy of Sciences</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1713333115">https://doi.org/10.1073/pnas.1713333115</a>
  chicago: Frost, Jennifer M., M. Yvonne Kim, Guen Tae Park, Ping-Hung Hsieh, Miyuki
    Nakamura, Samuel J. H. Lin, Hyunjin Yoo, et al. “FACT Complex Is Required for
    DNA Demethylation at Heterochromatin during Reproduction in Arabidopsis.” <i>Proceedings
    of the National Academy of Sciences</i>. National Academy of Sciences, 2018. <a
    href="https://doi.org/10.1073/pnas.1713333115">https://doi.org/10.1073/pnas.1713333115</a>.
  ieee: J. M. Frost <i>et al.</i>, “FACT complex is required for DNA demethylation
    at heterochromatin during reproduction in Arabidopsis,” <i>Proceedings of the
    National Academy of Sciences</i>, vol. 115, no. 20. National Academy of Sciences,
    pp. E4720–E4729, 2018.
  ista: Frost JM, Kim MY, Park GT, Hsieh P-H, Nakamura M, Lin SJH, Yoo H, Choi J,
    Ikeda Y, Kinoshita T, Choi Y, Zilberman D, Fischer RL. 2018. FACT complex is required
    for DNA demethylation at heterochromatin during reproduction in Arabidopsis. Proceedings
    of the National Academy of Sciences. 115(20), E4720–E4729.
  mla: Frost, Jennifer M., et al. “FACT Complex Is Required for DNA Demethylation
    at Heterochromatin during Reproduction in Arabidopsis.” <i>Proceedings of the
    National Academy of Sciences</i>, vol. 115, no. 20, National Academy of Sciences,
    2018, pp. E4720–29, doi:<a href="https://doi.org/10.1073/pnas.1713333115">10.1073/pnas.1713333115</a>.
  short: J.M. Frost, M.Y. Kim, G.T. Park, P.-H. Hsieh, M. Nakamura, S.J.H. Lin, H.
    Yoo, J. Choi, Y. Ikeda, T. Kinoshita, Y. Choi, D. Zilberman, R.L. Fischer, Proceedings
    of the National Academy of Sciences 115 (2018) E4720–E4729.
date_created: 2021-06-07T06:11:28Z
date_published: 2018-05-15T00:00:00Z
date_updated: 2021-12-14T07:53:40Z
day: '15'
ddc:
- '580'
department:
- _id: DaZi
doi: 10.1073/pnas.1713333115
extern: '1'
external_id:
  pmid:
  - '29712855'
file:
- access_level: open_access
  checksum: 810260dc0e3cc3033e15c19ad0dc123e
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  creator: asandaue
  date_created: 2021-06-07T06:16:38Z
  date_updated: 2021-06-07T06:16:38Z
  file_id: '9472'
  file_name: 2018_PNAS_Frost.pdf
  file_size: 3045260
  relation: main_file
  success: 1
file_date_updated: 2021-06-07T06:16:38Z
has_accepted_license: '1'
intvolume: '       115'
issue: '20'
keyword:
- Multidisciplinary
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '05'
oa: 1
oa_version: Published Version
page: E4720-E4729
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
related_material:
  link:
  - relation: earlier_version
    url: 'https://doi.org/10.1101/187674 '
scopus_import: '1'
status: public
title: FACT complex is required for DNA demethylation at heterochromatin during reproduction
  in Arabidopsis
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 115
year: '2018'
...
---
_id: '10'
abstract:
- lang: eng
  text: Genomic imprinting is an epigenetic process that leads to parent of origin-specific
    gene expression in a subset of genes. Imprinted genes are essential for brain
    development, and deregulation of imprinting is associated with neurodevelopmental
    diseases and the pathogenesis of psychiatric disorders. However, the cell-type
    specificity of imprinting at single cell resolution, and how imprinting and thus
    gene dosage regulates neuronal circuit assembly is still largely unknown. Here,
    MADM (Mosaic Analysis with Double Markers) technology was employed to assess genomic
    imprinting at single cell level. By visualizing MADM-induced uniparental disomies
    (UPDs) in distinct colors at single cell level in genetic mosaic animals, this
    experimental paradigm provides a unique quantitative platform to systematically
    assay the UPD-mediated imbalances in imprinted gene expression at unprecedented
    resolution. An experimental pipeline based on FACS, RNA-seq and bioinformatics
    analysis was established and applied to systematically map cell-type-specific
    ‘imprintomes’ in the mouse brain. The results revealed that parental-specific
    expression of imprinted genes per se is rarely cell-type-specific even at the
    individual cell level. Conversely, when we extended the comparison to downstream
    responses resulting from imbalanced imprinted gene expression, we discovered an
    unexpectedly high degree of cell-type specificity. Furthermore, we determined
    a novel function of genomic imprinting in cortical astrocyte production and in
    olfactory bulb (OB) granule cell generation. These results suggest important functional
    implication of genomic imprinting for generating cell-type diversity in the brain.
    In addition, MADM provides a powerful tool to study candidate genes by concomitant
    genetic manipulation and fluorescent labelling of single cells. MADM-based candidate
    gene approach was utilized to identify potential imprinted genes involved in the
    generation of cortical astrocytes and OB granule cells. We investigated p57Kip2,
    a maternally expressed gene and known cell cycle regulator. Although we found
    that p57Kip2 does not play a role in these processes, we detected an unexpected
    function of the paternal allele previously thought to be silent. Finally, we took
    advantage of a key property of MADM which is to allow unambiguous investigation
    of environmental impact on single cells. The experimental pipeline based on FACS
    and RNA-seq analysis of MADM-labeled cells was established to probe the functional
    differences of single cell loss of gene function compared to global loss of function
    on a transcriptional level. With this method, both common and distinct responses
    were isolated due to cell-autonomous and non-autonomous effects acting on genotypically
    identical cells. As a result, transcriptional changes were identified which result
    solely from the surrounding environment. Using the MADM technology to study genomic
    imprinting at single cell resolution, we have identified cell-type-specific gene
    expression, novel gene function and the impact of environment on single cell transcriptomes.
    Together, these provide important insights to the understanding of mechanisms
    regulating cell-type specificity and thus diversity in the brain.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Susanne
  full_name: Laukoter, Susanne
  id: 2D6B7A9A-F248-11E8-B48F-1D18A9856A87
  last_name: Laukoter
  orcid: 0000-0002-7903-3010
citation:
  ama: Laukoter S. Role of genomic imprinting in cerebral cortex development. 2018:1-139.
    doi:<a href="https://doi.org/10.15479/AT:ISTA:th1057">10.15479/AT:ISTA:th1057</a>
  apa: Laukoter, S. (2018). <i>Role of genomic imprinting in cerebral cortex development</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:th1057">https://doi.org/10.15479/AT:ISTA:th1057</a>
  chicago: Laukoter, Susanne. “Role of Genomic Imprinting in Cerebral Cortex Development.”
    Institute of Science and Technology Austria, 2018. <a href="https://doi.org/10.15479/AT:ISTA:th1057">https://doi.org/10.15479/AT:ISTA:th1057</a>.
  ieee: S. Laukoter, “Role of genomic imprinting in cerebral cortex development,”
    Institute of Science and Technology Austria, 2018.
  ista: Laukoter S. 2018. Role of genomic imprinting in cerebral cortex development.
    Institute of Science and Technology Austria.
  mla: Laukoter, Susanne. <i>Role of Genomic Imprinting in Cerebral Cortex Development</i>.
    Institute of Science and Technology Austria, 2018, pp. 1–139, doi:<a href="https://doi.org/10.15479/AT:ISTA:th1057">10.15479/AT:ISTA:th1057</a>.
  short: S. Laukoter, Role of Genomic Imprinting in Cerebral Cortex Development, Institute
    of Science and Technology Austria, 2018.
date_created: 2018-12-11T11:44:08Z
date_published: 2018-11-21T00:00:00Z
date_updated: 2023-09-07T12:40:44Z
day: '21'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: SiHi
doi: 10.15479/AT:ISTA:th1057
file:
- access_level: closed
  checksum: 41fdbf5fdce312802935d88a8ad9932c
  content_type: application/vnd.openxmlformats-officedocument.wordprocessingml.document
  creator: dernst
  date_created: 2019-05-10T07:47:04Z
  date_updated: 2019-11-23T23:30:03Z
  embargo_to: open_access
  file_id: '6396'
  file_name: Thesis_LaukoterSusanne_FINAL.docx
  file_size: 17949175
  relation: source_file
- access_level: open_access
  checksum: 53001a9a0c9e570e598d861bb0af28aa
  content_type: application/pdf
  creator: dernst
  date_created: 2019-05-10T07:47:04Z
  date_updated: 2021-02-11T11:17:16Z
  embargo: 2019-11-21
  file_id: '6397'
  file_name: Thesis_LaukoterSusanne_FINAL.pdf
  file_size: 21187245
  relation: main_file
file_date_updated: 2021-02-11T11:17:16Z
has_accepted_license: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 1 - 139
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '8046'
pubrep_id: '1057'
status: public
supervisor:
- first_name: Beatriz
  full_name: Vicoso, Beatriz
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
title: Role of genomic imprinting in cerebral cortex development
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '1012'
abstract:
- lang: eng
  text: We prove a new central limit theorem (CLT) for the difference of linear eigenvalue
    statistics of a Wigner random matrix H and its minor H and find that the fluctuation
    is much smaller than the fluctuations of the individual linear statistics, as
    a consequence of the strong correlation between the eigenvalues of H and H. In
    particular, our theorem identifies the fluctuation of Kerov's rectangular Young
    diagrams, defined by the interlacing eigenvalues ofH and H, around their asymptotic
    shape, the Vershik'Kerov'Logan'Shepp curve. Young diagrams equipped with the Plancherel
    measure follow the same limiting shape. For this, algebraically motivated, ensemble
    a CLT has been obtained in Ivanov and Olshanski [20] which is structurally similar
    to our result but the variance is different, indicating that the analogy between
    the two models has its limitations. Moreover, our theorem shows that Borodin's
    result [7] on the convergence of the spectral distribution of Wigner matrices
    to a Gaussian free field also holds in derivative sense.
article_processing_charge: No
arxiv: 1
author:
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: Erdös L, Schröder DJ. Fluctuations of rectangular young diagrams of interlacing
    wigner eigenvalues. <i>International Mathematics Research Notices</i>. 2018;2018(10):3255-3298.
    doi:<a href="https://doi.org/10.1093/imrn/rnw330">10.1093/imrn/rnw330</a>
  apa: Erdös, L., &#38; Schröder, D. J. (2018). Fluctuations of rectangular young
    diagrams of interlacing wigner eigenvalues. <i>International Mathematics Research
    Notices</i>. Oxford University Press. <a href="https://doi.org/10.1093/imrn/rnw330">https://doi.org/10.1093/imrn/rnw330</a>
  chicago: Erdös, László, and Dominik J Schröder. “Fluctuations of Rectangular Young
    Diagrams of Interlacing Wigner Eigenvalues.” <i>International Mathematics Research
    Notices</i>. Oxford University Press, 2018. <a href="https://doi.org/10.1093/imrn/rnw330">https://doi.org/10.1093/imrn/rnw330</a>.
  ieee: L. Erdös and D. J. Schröder, “Fluctuations of rectangular young diagrams of
    interlacing wigner eigenvalues,” <i>International Mathematics Research Notices</i>,
    vol. 2018, no. 10. Oxford University Press, pp. 3255–3298, 2018.
  ista: Erdös L, Schröder DJ. 2018. Fluctuations of rectangular young diagrams of
    interlacing wigner eigenvalues. International Mathematics Research Notices. 2018(10),
    3255–3298.
  mla: Erdös, László, and Dominik J. Schröder. “Fluctuations of Rectangular Young
    Diagrams of Interlacing Wigner Eigenvalues.” <i>International Mathematics Research
    Notices</i>, vol. 2018, no. 10, Oxford University Press, 2018, pp. 3255–98, doi:<a
    href="https://doi.org/10.1093/imrn/rnw330">10.1093/imrn/rnw330</a>.
  short: L. Erdös, D.J. Schröder, International Mathematics Research Notices 2018
    (2018) 3255–3298.
date_created: 2018-12-11T11:49:41Z
date_published: 2018-05-18T00:00:00Z
date_updated: 2023-09-22T09:44:21Z
day: '18'
department:
- _id: LaEr
doi: 10.1093/imrn/rnw330
ec_funded: 1
external_id:
  arxiv:
  - '1608.05163'
  isi:
  - '000441668300009'
intvolume: '      2018'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1608.05163
month: '05'
oa: 1
oa_version: Preprint
page: 3255-3298
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: International Mathematics Research Notices
publication_identifier:
  issn:
  - '10737928'
publication_status: published
publisher: Oxford University Press
publist_id: '6383'
quality_controlled: '1'
related_material:
  record:
  - id: '6179'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Fluctuations of rectangular young diagrams of interlacing wigner eigenvalues
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 2018
year: '2018'
...
---
_id: '10286'
abstract:
- lang: eng
  text: 'In this paper, we evaluate clock signals generated in ring oscillators and
    self-timed rings and the way their jitter can be transformed into random numbers.
    We show that counting the periods of the jittery clock signal produces random
    numbers of significantly better quality than the methods in which the jittery
    signal is simply sampled (the case in almost all current methods). Moreover, we
    use the counter values to characterize and continuously monitor the source of
    randomness. However, instead of using the widely used statistical variance, we
    propose to use Allan variance to do so. There are two main advantages: Allan variance
    is insensitive to low frequency noises such as flicker noise that are known to
    be autocorrelated and significantly less circuitry is required for its computation
    than that used to compute commonly used variance. We also show that it is essential
    to use a differential principle of randomness extraction from the jitter based
    on the use of two identical oscillators to avoid autocorrelations originating
    from external and internal global jitter sources and that this fact is valid for
    both kinds of rings. Last but not least, we propose a method of statistical testing
    based on high order Markov model to show the reduced dependencies when the proposed
    randomness extraction is applied.'
article_processing_charge: No
article_type: original
author:
- first_name: Elie Noumon
  full_name: Allini, Elie Noumon
  last_name: Allini
- first_name: Maciej
  full_name: Skórski, Maciej
  id: EC09FA6A-02D0-11E9-8223-86B7C91467DD
  last_name: Skórski
- first_name: Oto
  full_name: Petura, Oto
  last_name: Petura
- first_name: Florent
  full_name: Bernard, Florent
  last_name: Bernard
- first_name: Marek
  full_name: Laban, Marek
  last_name: Laban
- first_name: Viktor
  full_name: Fischer, Viktor
  last_name: Fischer
citation:
  ama: Allini EN, Skórski M, Petura O, Bernard F, Laban M, Fischer V. Evaluation and
    monitoring of free running oscillators serving as source of randomness. <i>IACR
    Transactions on Cryptographic Hardware and Embedded Systems</i>. 2018;2018(3):214-242.
    doi:<a href="https://doi.org/10.13154/tches.v2018.i3.214-242">10.13154/tches.v2018.i3.214-242</a>
  apa: Allini, E. N., Skórski, M., Petura, O., Bernard, F., Laban, M., &#38; Fischer,
    V. (2018). Evaluation and monitoring of free running oscillators serving as source
    of randomness. <i>IACR Transactions on Cryptographic Hardware and Embedded Systems</i>.
    International Association for Cryptologic Research. <a href="https://doi.org/10.13154/tches.v2018.i3.214-242">https://doi.org/10.13154/tches.v2018.i3.214-242</a>
  chicago: Allini, Elie Noumon, Maciej Skórski, Oto Petura, Florent Bernard, Marek
    Laban, and Viktor Fischer. “Evaluation and Monitoring of Free Running Oscillators
    Serving as Source of Randomness.” <i>IACR Transactions on Cryptographic Hardware
    and Embedded Systems</i>. International Association for Cryptologic Research,
    2018. <a href="https://doi.org/10.13154/tches.v2018.i3.214-242">https://doi.org/10.13154/tches.v2018.i3.214-242</a>.
  ieee: E. N. Allini, M. Skórski, O. Petura, F. Bernard, M. Laban, and V. Fischer,
    “Evaluation and monitoring of free running oscillators serving as source of randomness,”
    <i>IACR Transactions on Cryptographic Hardware and Embedded Systems</i>, vol.
    2018, no. 3. International Association for Cryptologic Research, pp. 214–242,
    2018.
  ista: Allini EN, Skórski M, Petura O, Bernard F, Laban M, Fischer V. 2018. Evaluation
    and monitoring of free running oscillators serving as source of randomness. IACR
    Transactions on Cryptographic Hardware and Embedded Systems. 2018(3), 214–242.
  mla: Allini, Elie Noumon, et al. “Evaluation and Monitoring of Free Running Oscillators
    Serving as Source of Randomness.” <i>IACR Transactions on Cryptographic Hardware
    and Embedded Systems</i>, vol. 2018, no. 3, International Association for Cryptologic
    Research, 2018, pp. 214–42, doi:<a href="https://doi.org/10.13154/tches.v2018.i3.214-242">10.13154/tches.v2018.i3.214-242</a>.
  short: E.N. Allini, M. Skórski, O. Petura, F. Bernard, M. Laban, V. Fischer, IACR
    Transactions on Cryptographic Hardware and Embedded Systems 2018 (2018) 214–242.
date_created: 2021-11-14T23:01:25Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2021-11-15T10:48:49Z
day: '01'
ddc:
- '000'
department:
- _id: KrPi
doi: 10.13154/tches.v2018.i3.214-242
file:
- access_level: open_access
  checksum: b816b848f046c48a8357700d9305dce5
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-11-15T10:27:29Z
  date_updated: 2021-11-15T10:27:29Z
  file_id: '10289'
  file_name: 2018_IACR_Allini.pdf
  file_size: 955755
  relation: main_file
  success: 1
file_date_updated: 2021-11-15T10:27:29Z
has_accepted_license: '1'
intvolume: '      2018'
issue: '3'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '01'
oa: 1
oa_version: Published Version
page: 214-242
publication: IACR Transactions on Cryptographic Hardware and Embedded Systems
publication_identifier:
  eissn:
  - 2569-2925
publication_status: published
publisher: International Association for Cryptologic Research
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evaluation and monitoring of free running oscillators serving as source of
  randomness
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 2018
year: '2018'
...
---
_id: '106'
abstract:
- lang: eng
  text: The goal of this article is to introduce the reader to the theory of intrinsic
    geometry of convex surfaces. We illustrate the power of the tools by proving a
    theorem on convex surfaces containing an arbitrarily long closed simple geodesic.
    Let us remind ourselves that a curve in a surface is called geodesic if every
    sufficiently short arc of the curve is length minimizing; if, in addition, it
    has no self-intersections, we call it simple geodesic. A tetrahedron with equal
    opposite edges is called isosceles. The axiomatic method of Alexandrov geometry
    allows us to work with the metrics of convex surfaces directly, without approximating
    it first by a smooth or polyhedral metric. Such approximations destroy the closed
    geodesics on the surface; therefore it is difficult (if at all possible) to apply
    approximations in the proof of our theorem. On the other hand, a proof in the
    smooth or polyhedral case usually admits a translation into Alexandrov’s language;
    such translation makes the result more general. In fact, our proof resembles a
    translation of the proof given by Protasov. Note that the main theorem implies
    in particular that a smooth convex surface does not have arbitrarily long simple
    closed geodesics. However we do not know a proof of this corollary that is essentially
    simpler than the one presented below.
article_processing_charge: No
arxiv: 1
author:
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Anton
  full_name: Petrunin, Anton
  last_name: Petrunin
citation:
  ama: Akopyan A, Petrunin A. Long geodesics on convex surfaces. <i>Mathematical Intelligencer</i>.
    2018;40(3):26-31. doi:<a href="https://doi.org/10.1007/s00283-018-9795-5">10.1007/s00283-018-9795-5</a>
  apa: Akopyan, A., &#38; Petrunin, A. (2018). Long geodesics on convex surfaces.
    <i>Mathematical Intelligencer</i>. Springer. <a href="https://doi.org/10.1007/s00283-018-9795-5">https://doi.org/10.1007/s00283-018-9795-5</a>
  chicago: Akopyan, Arseniy, and Anton Petrunin. “Long Geodesics on Convex Surfaces.”
    <i>Mathematical Intelligencer</i>. Springer, 2018. <a href="https://doi.org/10.1007/s00283-018-9795-5">https://doi.org/10.1007/s00283-018-9795-5</a>.
  ieee: A. Akopyan and A. Petrunin, “Long geodesics on convex surfaces,” <i>Mathematical
    Intelligencer</i>, vol. 40, no. 3. Springer, pp. 26–31, 2018.
  ista: Akopyan A, Petrunin A. 2018. Long geodesics on convex surfaces. Mathematical
    Intelligencer. 40(3), 26–31.
  mla: Akopyan, Arseniy, and Anton Petrunin. “Long Geodesics on Convex Surfaces.”
    <i>Mathematical Intelligencer</i>, vol. 40, no. 3, Springer, 2018, pp. 26–31,
    doi:<a href="https://doi.org/10.1007/s00283-018-9795-5">10.1007/s00283-018-9795-5</a>.
  short: A. Akopyan, A. Petrunin, Mathematical Intelligencer 40 (2018) 26–31.
date_created: 2018-12-11T11:44:40Z
date_published: 2018-09-01T00:00:00Z
date_updated: 2023-09-13T08:49:16Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/s00283-018-9795-5
external_id:
  arxiv:
  - '1702.05172'
  isi:
  - '000444141200005'
intvolume: '        40'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1702.05172
month: '09'
oa: 1
oa_version: Preprint
page: 26 - 31
publication: Mathematical Intelligencer
publication_status: published
publisher: Springer
publist_id: '7948'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Long geodesics on convex surfaces
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 40
year: '2018'
...
---
_id: '1064'
abstract:
- lang: eng
  text: 'In 1945, A.W. Goodman and R.E. Goodman proved the following conjecture by
    P. Erdős: Given a family of (round) disks of radii r1, … , rn in the plane, it
    is always possible to cover them by a disk of radius R= ∑ ri, provided they cannot
    be separated into two subfamilies by a straight line disjoint from the disks.
    In this note we show that essentially the same idea may work for different analogues
    and generalizations of their result. In particular, we prove the following: Given
    a family of positive homothetic copies of a fixed convex body K⊂ Rd with homothety
    coefficients τ1, … , τn> 0 , it is always possible to cover them by a translate
    of d+12(∑τi)K, provided they cannot be separated into two subfamilies by a hyperplane
    disjoint from the homothets.'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Alexey
  full_name: Balitskiy, Alexey
  last_name: Balitskiy
- first_name: Mikhail
  full_name: Grigorev, Mikhail
  last_name: Grigorev
citation:
  ama: Akopyan A, Balitskiy A, Grigorev M. On the circle covering theorem by A.W.
    Goodman and R.E. Goodman. <i>Discrete &#38; Computational Geometry</i>. 2018;59(4):1001-1009.
    doi:<a href="https://doi.org/10.1007/s00454-017-9883-x">10.1007/s00454-017-9883-x</a>
  apa: Akopyan, A., Balitskiy, A., &#38; Grigorev, M. (2018). On the circle covering
    theorem by A.W. Goodman and R.E. Goodman. <i>Discrete &#38; Computational Geometry</i>.
    Springer. <a href="https://doi.org/10.1007/s00454-017-9883-x">https://doi.org/10.1007/s00454-017-9883-x</a>
  chicago: Akopyan, Arseniy, Alexey Balitskiy, and Mikhail Grigorev. “On the Circle
    Covering Theorem by A.W. Goodman and R.E. Goodman.” <i>Discrete &#38; Computational
    Geometry</i>. Springer, 2018. <a href="https://doi.org/10.1007/s00454-017-9883-x">https://doi.org/10.1007/s00454-017-9883-x</a>.
  ieee: A. Akopyan, A. Balitskiy, and M. Grigorev, “On the circle covering theorem
    by A.W. Goodman and R.E. Goodman,” <i>Discrete &#38; Computational Geometry</i>,
    vol. 59, no. 4. Springer, pp. 1001–1009, 2018.
  ista: Akopyan A, Balitskiy A, Grigorev M. 2018. On the circle covering theorem by
    A.W. Goodman and R.E. Goodman. Discrete &#38; Computational Geometry. 59(4), 1001–1009.
  mla: Akopyan, Arseniy, et al. “On the Circle Covering Theorem by A.W. Goodman and
    R.E. Goodman.” <i>Discrete &#38; Computational Geometry</i>, vol. 59, no. 4, Springer,
    2018, pp. 1001–09, doi:<a href="https://doi.org/10.1007/s00454-017-9883-x">10.1007/s00454-017-9883-x</a>.
  short: A. Akopyan, A. Balitskiy, M. Grigorev, Discrete &#38; Computational Geometry
    59 (2018) 1001–1009.
date_created: 2018-12-11T11:49:57Z
date_published: 2018-06-01T00:00:00Z
date_updated: 2023-09-20T12:08:51Z
day: '01'
ddc:
- '516'
- '000'
department:
- _id: HeEd
doi: 10.1007/s00454-017-9883-x
ec_funded: 1
external_id:
  isi:
  - '000432205500011'
file:
- access_level: open_access
  content_type: application/pdf
  creator: dernst
  date_created: 2019-01-18T09:27:36Z
  date_updated: 2019-01-18T09:27:36Z
  file_id: '5844'
  file_name: 2018_DiscreteComp_Akopyan.pdf
  file_size: 482518
  relation: main_file
  success: 1
file_date_updated: 2019-01-18T09:27:36Z
has_accepted_license: '1'
intvolume: '        59'
isi: 1
issue: '4'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 1001-1009
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Discrete & Computational Geometry
publication_identifier:
  eissn:
  - '14320444'
  issn:
  - '01795376'
publication_status: published
publisher: Springer
publist_id: '6324'
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the circle covering theorem by A.W. Goodman and R.E. Goodman
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 59
year: '2018'
...
---
_id: '12'
abstract:
- lang: eng
  text: Molding is a popular mass production method, in which the initial expenses
    for the mold are offset by the low per-unit production cost. However, the physical
    fabrication constraints of the molding technique commonly restrict the shape of
    moldable objects. For a complex shape, a decomposition of the object into moldable
    parts is a common strategy to address these constraints, with plastic model kits
    being a popular and illustrative example. However, conducting such a decomposition
    requires considerable expertise, and it depends on the technical aspects of the
    fabrication technique, as well as aesthetic considerations. We present an interactive
    technique to create such decompositions for two-piece molding, in which each part
    of the object is cast between two rigid mold pieces. Given the surface description
    of an object, we decompose its thin-shell equivalent into moldable parts by first
    performing a coarse decomposition and then utilizing an active contour model for
    the boundaries between individual parts. Formulated as an optimization problem,
    the movement of the contours is guided by an energy reflecting fabrication constraints
    to ensure the moldability of each part. Simultaneously, the user is provided with
    editing capabilities to enforce aesthetic guidelines. Our interactive interface
    provides control of the contour positions by allowing, for example, the alignment
    of part boundaries with object features. Our technique enables a novel workflow,
    as it empowers novice users to explore the design space, and it generates fabrication-ready
    two-piece molds that can be used either for casting or industrial injection molding
    of free-form objects.
article_number: '135'
article_processing_charge: No
author:
- first_name: Kazutaka
  full_name: Nakashima, Kazutaka
  last_name: Nakashima
- first_name: Thomas
  full_name: Auzinger, Thomas
  id: 4718F954-F248-11E8-B48F-1D18A9856A87
  last_name: Auzinger
  orcid: 0000-0002-1546-3265
- first_name: Emmanuel
  full_name: Iarussi, Emmanuel
  id: 33F19F16-F248-11E8-B48F-1D18A9856A87
  last_name: Iarussi
- first_name: Ran
  full_name: Zhang, Ran
  id: 4DDBCEB0-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0002-3808-281X
- first_name: Takeo
  full_name: Igarashi, Takeo
  last_name: Igarashi
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
citation:
  ama: 'Nakashima K, Auzinger T, Iarussi E, Zhang R, Igarashi T, Bickel B. CoreCavity:
    Interactive shell decomposition for fabrication with two-piece rigid molds. <i>ACM
    Transaction on Graphics</i>. 2018;37(4). doi:<a href="https://doi.org/10.1145/3197517.3201341">10.1145/3197517.3201341</a>'
  apa: 'Nakashima, K., Auzinger, T., Iarussi, E., Zhang, R., Igarashi, T., &#38; Bickel,
    B. (2018). CoreCavity: Interactive shell decomposition for fabrication with two-piece
    rigid molds. <i>ACM Transaction on Graphics</i>. ACM. <a href="https://doi.org/10.1145/3197517.3201341">https://doi.org/10.1145/3197517.3201341</a>'
  chicago: 'Nakashima, Kazutaka, Thomas Auzinger, Emmanuel Iarussi, Ran Zhang, Takeo
    Igarashi, and Bernd Bickel. “CoreCavity: Interactive Shell Decomposition for Fabrication
    with Two-Piece Rigid Molds.” <i>ACM Transaction on Graphics</i>. ACM, 2018. <a
    href="https://doi.org/10.1145/3197517.3201341">https://doi.org/10.1145/3197517.3201341</a>.'
  ieee: 'K. Nakashima, T. Auzinger, E. Iarussi, R. Zhang, T. Igarashi, and B. Bickel,
    “CoreCavity: Interactive shell decomposition for fabrication with two-piece rigid
    molds,” <i>ACM Transaction on Graphics</i>, vol. 37, no. 4. ACM, 2018.'
  ista: 'Nakashima K, Auzinger T, Iarussi E, Zhang R, Igarashi T, Bickel B. 2018.
    CoreCavity: Interactive shell decomposition for fabrication with two-piece rigid
    molds. ACM Transaction on Graphics. 37(4), 135.'
  mla: 'Nakashima, Kazutaka, et al. “CoreCavity: Interactive Shell Decomposition for
    Fabrication with Two-Piece Rigid Molds.” <i>ACM Transaction on Graphics</i>, vol.
    37, no. 4, 135, ACM, 2018, doi:<a href="https://doi.org/10.1145/3197517.3201341">10.1145/3197517.3201341</a>.'
  short: K. Nakashima, T. Auzinger, E. Iarussi, R. Zhang, T. Igarashi, B. Bickel,
    ACM Transaction on Graphics 37 (2018).
date_created: 2018-12-11T11:44:09Z
date_published: 2018-08-04T00:00:00Z
date_updated: 2023-09-11T12:48:09Z
day: '04'
ddc:
- '004'
- '516'
- '670'
department:
- _id: BeBi
doi: 10.1145/3197517.3201341
ec_funded: 1
external_id:
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language:
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month: '08'
oa: 1
oa_version: Submitted Version
project:
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '715767'
  name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
    Modeling'
- _id: 2508E324-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '642841'
  name: Distributed 3D Object Design
publication: ACM Transaction on Graphics
publication_status: published
publisher: ACM
publist_id: '8044'
pubrep_id: '1037'
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/interactive-software-tool-makes-complex-mold-design-simple/
scopus_import: '1'
status: public
title: 'CoreCavity: Interactive shell decomposition for fabrication with two-piece
  rigid molds'
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 37
year: '2018'
...
---
_id: '1215'
abstract:
- lang: eng
  text: "Two generalizations of Itô formula to infinite-dimensional spaces are given.\r\nThe
    first one, in Hilbert spaces, extends the classical one by taking advantage of\r\ncancellations
    when they occur in examples and it is applied to the case of a group\r\ngenerator.
    The second one, based on the previous one and a limit procedure, is an Itô\r\nformula
    in a special class of Banach spaces having a product structure with the noise\r\nin
    a Hilbert component; again the key point is the extension due to a cancellation.
    This\r\nextension to Banach spaces and in particular the specific cancellation
    are motivated\r\nby path-dependent Itô calculus."
acknowledgement: Open access funding provided by Institute of Science and Technology
  (IST Austria). The second named author benefited partially from the support of the
  “FMJH Program Gaspard Monge in Optimization and Operations Research” (Project 2014-1607H).
  He is also grateful for the invitation to the Department of Mathematics of the University
  of Pisa. The third named author is grateful for the invitation to ENSTA.
article_processing_charge: Yes (via OA deal)
author:
- first_name: Franco
  full_name: Flandoli, Franco
  last_name: Flandoli
- first_name: Francesco
  full_name: Russo, Francesco
  last_name: Russo
- first_name: Giovanni A
  full_name: Zanco, Giovanni A
  id: 47491882-F248-11E8-B48F-1D18A9856A87
  last_name: Zanco
citation:
  ama: Flandoli F, Russo F, Zanco GA. Infinite-dimensional calculus under weak spatial
    regularity of the processes. <i>Journal of Theoretical Probability</i>. 2018;31(2):789-826.
    doi:<a href="https://doi.org/10.1007/s10959-016-0724-2">10.1007/s10959-016-0724-2</a>
  apa: Flandoli, F., Russo, F., &#38; Zanco, G. A. (2018). Infinite-dimensional calculus
    under weak spatial regularity of the processes. <i>Journal of Theoretical Probability</i>.
    Springer. <a href="https://doi.org/10.1007/s10959-016-0724-2">https://doi.org/10.1007/s10959-016-0724-2</a>
  chicago: Flandoli, Franco, Francesco Russo, and Giovanni A Zanco. “Infinite-Dimensional
    Calculus under Weak Spatial Regularity of the Processes.” <i>Journal of Theoretical
    Probability</i>. Springer, 2018. <a href="https://doi.org/10.1007/s10959-016-0724-2">https://doi.org/10.1007/s10959-016-0724-2</a>.
  ieee: F. Flandoli, F. Russo, and G. A. Zanco, “Infinite-dimensional calculus under
    weak spatial regularity of the processes,” <i>Journal of Theoretical Probability</i>,
    vol. 31, no. 2. Springer, pp. 789–826, 2018.
  ista: Flandoli F, Russo F, Zanco GA. 2018. Infinite-dimensional calculus under weak
    spatial regularity of the processes. Journal of Theoretical Probability. 31(2),
    789–826.
  mla: Flandoli, Franco, et al. “Infinite-Dimensional Calculus under Weak Spatial
    Regularity of the Processes.” <i>Journal of Theoretical Probability</i>, vol.
    31, no. 2, Springer, 2018, pp. 789–826, doi:<a href="https://doi.org/10.1007/s10959-016-0724-2">10.1007/s10959-016-0724-2</a>.
  short: F. Flandoli, F. Russo, G.A. Zanco, Journal of Theoretical Probability 31
    (2018) 789–826.
date_created: 2018-12-11T11:50:45Z
date_published: 2018-06-01T00:00:00Z
date_updated: 2021-01-12T06:49:09Z
day: '01'
ddc:
- '519'
department:
- _id: JaMa
doi: 10.1007/s10959-016-0724-2
file:
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  checksum: 47686d58ec21c164540f1a980ff2163f
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  creator: system
  date_created: 2018-12-12T10:17:13Z
  date_updated: 2020-07-14T12:44:39Z
  file_id: '5266'
  file_name: IST-2016-712-v1+1_s10959-016-0724-2.pdf
  file_size: 671125
  relation: main_file
file_date_updated: 2020-07-14T12:44:39Z
has_accepted_license: '1'
intvolume: '        31'
issue: '2'
language:
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month: '06'
oa: 1
oa_version: Published Version
page: 789-826
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Journal of Theoretical Probability
publication_status: published
publisher: Springer
publist_id: '6119'
pubrep_id: '712'
quality_controlled: '1'
scopus_import: 1
status: public
title: Infinite-dimensional calculus under weak spatial regularity of the processes
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 31
year: '2018'
...
---
_id: '13'
abstract:
- lang: eng
  text: We propose a new method for fabricating digital objects through reusable silicone
    molds. Molds are generated by casting liquid silicone into custom 3D printed containers
    called metamolds. Metamolds automatically define the cuts that are needed to extract
    the cast object from the silicone mold. The shape of metamolds is designed through
    a novel segmentation technique, which takes into account both geometric and topological
    constraints involved in the process of mold casting. Our technique is simple,
    does not require changing the shape or topology of the input objects, and only
    requires off-the- shelf materials and technologies. We successfully tested our
    method on a set of challenging examples with complex shapes and rich geometric
    detail. © 2018 Association for Computing Machinery.
article_number: '136'
article_processing_charge: No
author:
- first_name: Thomas
  full_name: Alderighi, Thomas
  last_name: Alderighi
- first_name: Luigi
  full_name: Malomo, Luigi
  last_name: Malomo
- first_name: Daniela
  full_name: Giorgi, Daniela
  last_name: Giorgi
- first_name: Nico
  full_name: Pietroni, Nico
  last_name: Pietroni
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Paolo
  full_name: Cignoni, Paolo
  last_name: Cignoni
citation:
  ama: 'Alderighi T, Malomo L, Giorgi D, Pietroni N, Bickel B, Cignoni P. Metamolds:
    Computational design of silicone molds. <i>ACM Trans Graph</i>. 2018;37(4). doi:<a
    href="https://doi.org/10.1145/3197517.3201381">10.1145/3197517.3201381</a>'
  apa: 'Alderighi, T., Malomo, L., Giorgi, D., Pietroni, N., Bickel, B., &#38; Cignoni,
    P. (2018). Metamolds: Computational design of silicone molds. <i>ACM Trans. Graph.</i>
    ACM. <a href="https://doi.org/10.1145/3197517.3201381">https://doi.org/10.1145/3197517.3201381</a>'
  chicago: 'Alderighi, Thomas, Luigi Malomo, Daniela Giorgi, Nico Pietroni, Bernd
    Bickel, and Paolo Cignoni. “Metamolds: Computational Design of Silicone Molds.”
    <i>ACM Trans. Graph.</i> ACM, 2018. <a href="https://doi.org/10.1145/3197517.3201381">https://doi.org/10.1145/3197517.3201381</a>.'
  ieee: 'T. Alderighi, L. Malomo, D. Giorgi, N. Pietroni, B. Bickel, and P. Cignoni,
    “Metamolds: Computational design of silicone molds,” <i>ACM Trans. Graph.</i>,
    vol. 37, no. 4. ACM, 2018.'
  ista: 'Alderighi T, Malomo L, Giorgi D, Pietroni N, Bickel B, Cignoni P. 2018. Metamolds:
    Computational design of silicone molds. ACM Trans. Graph. 37(4), 136.'
  mla: 'Alderighi, Thomas, et al. “Metamolds: Computational Design of Silicone Molds.”
    <i>ACM Trans. Graph.</i>, vol. 37, no. 4, 136, ACM, 2018, doi:<a href="https://doi.org/10.1145/3197517.3201381">10.1145/3197517.3201381</a>.'
  short: T. Alderighi, L. Malomo, D. Giorgi, N. Pietroni, B. Bickel, P. Cignoni, ACM
    Trans. Graph. 37 (2018).
date_created: 2018-12-11T11:44:09Z
date_published: 2018-08-04T00:00:00Z
date_updated: 2023-09-13T08:56:07Z
day: '04'
ddc:
- '004'
department:
- _id: BeBi
doi: 10.1145/3197517.3201381
ec_funded: 1
external_id:
  isi:
  - '000448185000097'
file:
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  checksum: 61d46273dca4de626accef1d17a0aaad
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:18:52Z
  date_updated: 2020-07-14T12:44:43Z
  file_id: '5374'
  file_name: IST-2018-1038-v1+1_metamolds_authorversion.pdf
  file_size: 91939066
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file_date_updated: 2020-07-14T12:44:43Z
has_accepted_license: '1'
intvolume: '        37'
isi: 1
issue: '4'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Submitted Version
project:
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '715767'
  name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
    Modeling'
publication: ACM Trans. Graph.
publication_status: published
publisher: ACM
publist_id: '8043'
pubrep_id: '1038'
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/metamolds-molding-a-mold/
scopus_import: '1'
status: public
title: 'Metamolds: Computational design of silicone molds'
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 37
year: '2018'
...
---
_id: '9807'
abstract:
- lang: eng
  text: Table S1. Genes with highest betweenness. Table S2. Local and Master regulators
    up-regulated. Table S3. Local and Master regulators down-regulated (XLSX 23 kb).
article_processing_charge: No
author:
- first_name: Juan
  full_name: Higareda Almaraz, Juan
  last_name: Higareda Almaraz
- first_name: Michael
  full_name: Karbiener, Michael
  last_name: Karbiener
- first_name: Maude
  full_name: Giroud, Maude
  last_name: Giroud
- first_name: Florian
  full_name: Pauler, Florian
  id: 48EA0138-F248-11E8-B48F-1D18A9856A87
  last_name: Pauler
  orcid: 0000-0002-7462-0048
- first_name: Teresa
  full_name: Gerhalter, Teresa
  last_name: Gerhalter
- first_name: Stephan
  full_name: Herzig, Stephan
  last_name: Herzig
- first_name: Marcel
  full_name: Scheideler, Marcel
  last_name: Scheideler
citation:
  ama: 'Higareda Almaraz J, Karbiener M, Giroud M, et al. Additional file 1: Of Norepinephrine
    triggers an immediate-early regulatory network response in primary human white
    adipocytes. 2018. doi:<a href="https://doi.org/10.6084/m9.figshare.7295339.v1">10.6084/m9.figshare.7295339.v1</a>'
  apa: 'Higareda Almaraz, J., Karbiener, M., Giroud, M., Pauler, F., Gerhalter, T.,
    Herzig, S., &#38; Scheideler, M. (2018). Additional file 1: Of Norepinephrine
    triggers an immediate-early regulatory network response in primary human white
    adipocytes. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.7295339.v1">https://doi.org/10.6084/m9.figshare.7295339.v1</a>'
  chicago: 'Higareda Almaraz, Juan, Michael Karbiener, Maude Giroud, Florian Pauler,
    Teresa Gerhalter, Stephan Herzig, and Marcel Scheideler. “Additional File 1: Of
    Norepinephrine Triggers an Immediate-Early Regulatory Network Response in Primary
    Human White Adipocytes.” Springer Nature, 2018. <a href="https://doi.org/10.6084/m9.figshare.7295339.v1">https://doi.org/10.6084/m9.figshare.7295339.v1</a>.'
  ieee: 'J. Higareda Almaraz <i>et al.</i>, “Additional file 1: Of Norepinephrine
    triggers an immediate-early regulatory network response in primary human white
    adipocytes.” Springer Nature, 2018.'
  ista: 'Higareda Almaraz J, Karbiener M, Giroud M, Pauler F, Gerhalter T, Herzig
    S, Scheideler M. 2018. Additional file 1: Of Norepinephrine triggers an immediate-early
    regulatory network response in primary human white adipocytes, Springer Nature,
    <a href="https://doi.org/10.6084/m9.figshare.7295339.v1">10.6084/m9.figshare.7295339.v1</a>.'
  mla: 'Higareda Almaraz, Juan, et al. <i>Additional File 1: Of Norepinephrine Triggers
    an Immediate-Early Regulatory Network Response in Primary Human White Adipocytes</i>.
    Springer Nature, 2018, doi:<a href="https://doi.org/10.6084/m9.figshare.7295339.v1">10.6084/m9.figshare.7295339.v1</a>.'
  short: J. Higareda Almaraz, M. Karbiener, M. Giroud, F. Pauler, T. Gerhalter, S.
    Herzig, M. Scheideler, (2018).
date_created: 2021-08-06T12:26:53Z
date_published: 2018-11-03T00:00:00Z
date_updated: 2023-09-13T09:10:47Z
day: '03'
department:
- _id: SiHi
doi: 10.6084/m9.figshare.7295339.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.7295339.v1
month: '11'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '20'
    relation: used_in_publication
    status: public
status: public
title: 'Additional file 1: Of Norepinephrine triggers an immediate-early regulatory
  network response in primary human white adipocytes'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2018'
...
---
_id: '9808'
abstract:
- lang: eng
  text: Table S4. Counts per Gene per Million Reads Mapped. (XLSX 2751 kb).
article_processing_charge: No
author:
- first_name: Juan
  full_name: Higareda Almaraz, Juan
  last_name: Higareda Almaraz
- first_name: Michael
  full_name: Karbiener, Michael
  last_name: Karbiener
- first_name: Maude
  full_name: Giroud, Maude
  last_name: Giroud
- first_name: Florian
  full_name: Pauler, Florian
  id: 48EA0138-F248-11E8-B48F-1D18A9856A87
  last_name: Pauler
  orcid: 0000-0002-7462-0048
- first_name: Teresa
  full_name: Gerhalter, Teresa
  last_name: Gerhalter
- first_name: Stephan
  full_name: Herzig, Stephan
  last_name: Herzig
- first_name: Marcel
  full_name: Scheideler, Marcel
  last_name: Scheideler
citation:
  ama: 'Higareda Almaraz J, Karbiener M, Giroud M, et al. Additional file 3: Of Norepinephrine
    triggers an immediate-early regulatory network response in primary human white
    adipocytes. 2018. doi:<a href="https://doi.org/10.6084/m9.figshare.7295369.v1">10.6084/m9.figshare.7295369.v1</a>'
  apa: 'Higareda Almaraz, J., Karbiener, M., Giroud, M., Pauler, F., Gerhalter, T.,
    Herzig, S., &#38; Scheideler, M. (2018). Additional file 3: Of Norepinephrine
    triggers an immediate-early regulatory network response in primary human white
    adipocytes. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.7295369.v1">https://doi.org/10.6084/m9.figshare.7295369.v1</a>'
  chicago: 'Higareda Almaraz, Juan, Michael Karbiener, Maude Giroud, Florian Pauler,
    Teresa Gerhalter, Stephan Herzig, and Marcel Scheideler. “Additional File 3: Of
    Norepinephrine Triggers an Immediate-Early Regulatory Network Response in Primary
    Human White Adipocytes.” Springer Nature, 2018. <a href="https://doi.org/10.6084/m9.figshare.7295369.v1">https://doi.org/10.6084/m9.figshare.7295369.v1</a>.'
  ieee: 'J. Higareda Almaraz <i>et al.</i>, “Additional file 3: Of Norepinephrine
    triggers an immediate-early regulatory network response in primary human white
    adipocytes.” Springer Nature, 2018.'
  ista: 'Higareda Almaraz J, Karbiener M, Giroud M, Pauler F, Gerhalter T, Herzig
    S, Scheideler M. 2018. Additional file 3: Of Norepinephrine triggers an immediate-early
    regulatory network response in primary human white adipocytes, Springer Nature,
    <a href="https://doi.org/10.6084/m9.figshare.7295369.v1">10.6084/m9.figshare.7295369.v1</a>.'
  mla: 'Higareda Almaraz, Juan, et al. <i>Additional File 3: Of Norepinephrine Triggers
    an Immediate-Early Regulatory Network Response in Primary Human White Adipocytes</i>.
    Springer Nature, 2018, doi:<a href="https://doi.org/10.6084/m9.figshare.7295369.v1">10.6084/m9.figshare.7295369.v1</a>.'
  short: J. Higareda Almaraz, M. Karbiener, M. Giroud, F. Pauler, T. Gerhalter, S.
    Herzig, M. Scheideler, (2018).
date_created: 2021-08-06T12:31:57Z
date_published: 2018-11-03T00:00:00Z
date_updated: 2023-09-13T09:10:47Z
day: '03'
department:
- _id: SiHi
doi: 10.6084/m9.figshare.7295369.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.7295369.v1
month: '11'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
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  - id: '20'
    relation: used_in_publication
    status: public
status: public
title: 'Additional file 3: Of Norepinephrine triggers an immediate-early regulatory
  network response in primary human white adipocytes'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2018'
...
---
_id: '9810'
article_processing_charge: No
author:
- first_name: Waqas
  full_name: Chaudhry, Waqas
  last_name: Chaudhry
- first_name: Maros
  full_name: Pleska, Maros
  id: 4569785E-F248-11E8-B48F-1D18A9856A87
  last_name: Pleska
  orcid: 0000-0001-7460-7479
- first_name: Nilang
  full_name: Shah, Nilang
  last_name: Shah
- first_name: Howard
  full_name: Weiss, Howard
  last_name: Weiss
- first_name: Ingrid
  full_name: Mccall, Ingrid
  last_name: Mccall
- first_name: Justin
  full_name: Meyer, Justin
  last_name: Meyer
- first_name: Animesh
  full_name: Gupta, Animesh
  last_name: Gupta
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
- first_name: Bruce
  full_name: Levin, Bruce
  last_name: Levin
citation:
  ama: Chaudhry W, Pleska M, Shah N, et al. Numerical data used in figures. 2018.
    doi:<a href="https://doi.org/10.1371/journal.pbio.2005971.s008">10.1371/journal.pbio.2005971.s008</a>
  apa: Chaudhry, W., Pleska, M., Shah, N., Weiss, H., Mccall, I., Meyer, J., … Levin,
    B. (2018). Numerical data used in figures. Public Library of Science. <a href="https://doi.org/10.1371/journal.pbio.2005971.s008">https://doi.org/10.1371/journal.pbio.2005971.s008</a>
  chicago: Chaudhry, Waqas, Maros Pleska, Nilang Shah, Howard Weiss, Ingrid Mccall,
    Justin Meyer, Animesh Gupta, Calin C Guet, and Bruce Levin. “Numerical Data Used
    in Figures.” Public Library of Science, 2018. <a href="https://doi.org/10.1371/journal.pbio.2005971.s008">https://doi.org/10.1371/journal.pbio.2005971.s008</a>.
  ieee: W. Chaudhry <i>et al.</i>, “Numerical data used in figures.” Public Library
    of Science, 2018.
  ista: Chaudhry W, Pleska M, Shah N, Weiss H, Mccall I, Meyer J, Gupta A, Guet CC,
    Levin B. 2018. Numerical data used in figures, Public Library of Science, <a href="https://doi.org/10.1371/journal.pbio.2005971.s008">10.1371/journal.pbio.2005971.s008</a>.
  mla: Chaudhry, Waqas, et al. <i>Numerical Data Used in Figures</i>. Public Library
    of Science, 2018, doi:<a href="https://doi.org/10.1371/journal.pbio.2005971.s008">10.1371/journal.pbio.2005971.s008</a>.
  short: W. Chaudhry, M. Pleska, N. Shah, H. Weiss, I. Mccall, J. Meyer, A. Gupta,
    C.C. Guet, B. Levin, (2018).
date_created: 2021-08-06T12:43:44Z
date_published: 2018-08-16T00:00:00Z
date_updated: 2023-09-13T08:45:41Z
day: '16'
department:
- _id: CaGu
doi: 10.1371/journal.pbio.2005971.s008
month: '08'
oa_version: Published Version
publisher: Public Library of Science
related_material:
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    relation: used_in_publication
    status: public
status: public
title: Numerical data used in figures
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2018'
...
