---
_id: '14787'
abstract:
- lang: eng
  text: Understanding the phenotypic and genetic architecture of reproductive isolation
    is a long‐standing goal of speciation research. In several systems, large‐effect
    loci contributing to barrier phenotypes have been characterized, but such causal
    connections are rarely known for more complex genetic architectures. In this study,
    we combine “top‐down” and “bottom‐up” approaches with demographic modelling toward
    an integrated understanding of speciation across a monkeyflower hybrid zone. Previous
    work suggests that pollinator visitation acts as a primary barrier to gene flow
    between two divergent red‐ and yellow‐flowered ecotypes of<jats:italic>Mimulus
    aurantiacus</jats:italic>. Several candidate isolating traits and anonymous single
    nucleotide polymorphism loci under divergent selection have been identified, but
    their genomic positions remain unknown. Here, we report findings from demographic
    analyses that indicate this hybrid zone formed by secondary contact, but that
    subsequent gene flow was restricted by widespread barrier loci across the genome.
    Using a novel, geographic cline‐based genome scan, we demonstrate that candidate
    barrier loci are broadly distributed across the genome, rather than mapping to
    one or a few “islands of speciation.” Quantitative trait locus (QTL) mapping reveals
    that most floral traits are highly polygenic, with little evidence that QTL colocalize,
    indicating that most traits are genetically independent. Finally, we find little
    evidence that QTL and candidate barrier loci overlap, suggesting that some loci
    contribute to other forms of reproductive isolation. Our findings highlight the
    challenges of understanding the genetic architecture of reproductive isolation
    and reveal that barriers to gene flow other than pollinator isolation may play
    an important role in this system.
acknowledgement: We thank Julian Catchen for making modifications to Stacks to aid
  this project. Peter L. Ralph, Thomas Nelson, Roger K. Butlin, Anja M. Westram and
  Nicholas H. Barton provided advice, stimulating discussion and critical feedback.
  The project was supported by National Science Foundation grant DEB-1258199.
article_processing_charge: No
article_type: original
author:
- first_name: Sean
  full_name: Stankowski, Sean
  id: 43161670-5719-11EA-8025-FABC3DDC885E
  last_name: Stankowski
- first_name: Madeline A.
  full_name: Chase, Madeline A.
  last_name: Chase
- first_name: Hanna
  full_name: McIntosh, Hanna
  last_name: McIntosh
- first_name: Matthew A.
  full_name: Streisfeld, Matthew A.
  last_name: Streisfeld
citation:
  ama: Stankowski S, Chase MA, McIntosh H, Streisfeld MA. Integrating top‐down and
    bottom‐up approaches to understand the genetic architecture of speciation across
    a monkeyflower hybrid zone. <i>Molecular Ecology</i>. 2023;32(8):2041-2054. doi:<a
    href="https://doi.org/10.1111/mec.16849">10.1111/mec.16849</a>
  apa: Stankowski, S., Chase, M. A., McIntosh, H., &#38; Streisfeld, M. A. (2023).
    Integrating top‐down and bottom‐up approaches to understand the genetic architecture
    of speciation across a monkeyflower hybrid zone. <i>Molecular Ecology</i>. Wiley.
    <a href="https://doi.org/10.1111/mec.16849">https://doi.org/10.1111/mec.16849</a>
  chicago: Stankowski, Sean, Madeline A. Chase, Hanna McIntosh, and Matthew A. Streisfeld.
    “Integrating Top‐down and Bottom‐up Approaches to Understand the Genetic Architecture
    of Speciation across a Monkeyflower Hybrid Zone.” <i>Molecular Ecology</i>. Wiley,
    2023. <a href="https://doi.org/10.1111/mec.16849">https://doi.org/10.1111/mec.16849</a>.
  ieee: S. Stankowski, M. A. Chase, H. McIntosh, and M. A. Streisfeld, “Integrating
    top‐down and bottom‐up approaches to understand the genetic architecture of speciation
    across a monkeyflower hybrid zone,” <i>Molecular Ecology</i>, vol. 32, no. 8.
    Wiley, pp. 2041–2054, 2023.
  ista: Stankowski S, Chase MA, McIntosh H, Streisfeld MA. 2023. Integrating top‐down
    and bottom‐up approaches to understand the genetic architecture of speciation
    across a monkeyflower hybrid zone. Molecular Ecology. 32(8), 2041–2054.
  mla: Stankowski, Sean, et al. “Integrating Top‐down and Bottom‐up Approaches to
    Understand the Genetic Architecture of Speciation across a Monkeyflower Hybrid
    Zone.” <i>Molecular Ecology</i>, vol. 32, no. 8, Wiley, 2023, pp. 2041–54, doi:<a
    href="https://doi.org/10.1111/mec.16849">10.1111/mec.16849</a>.
  short: S. Stankowski, M.A. Chase, H. McIntosh, M.A. Streisfeld, Molecular Ecology
    32 (2023) 2041–2054.
date_created: 2024-01-10T10:44:45Z
date_published: 2023-04-01T00:00:00Z
date_updated: 2024-01-16T10:10:00Z
day: '01'
department:
- _id: NiBa
doi: 10.1111/mec.16849
external_id:
  isi:
  - '000919244600001'
  pmid:
  - '36651268'
intvolume: '        32'
isi: 1
issue: '8'
keyword:
- Genetics
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/2022.01.28.478139
month: '04'
oa: 1
oa_version: Preprint
page: 2041-2054
pmid: 1
publication: Molecular Ecology
publication_identifier:
  eissn:
  - 1365-294X
  issn:
  - 0962-1083
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Integrating top‐down and bottom‐up approaches to understand the genetic architecture
  of speciation across a monkeyflower hybrid zone
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2023'
...
---
_id: '14788'
abstract:
- lang: eng
  text: "Eukaryotic cells use clathrin-mediated endocytosis to take up a large range
    of extracellular cargo. During endocytosis, a clathrin coat forms on the plasma
    membrane, but it remains controversial when and how it is remodeled into a spherical
    vesicle.\r\nHere, we use 3D superresolution microscopy to determine the precise
    geometry of the clathrin coat at large numbers of endocytic sites. Through pseudo-temporal
    sorting, we determine the average trajectory of clathrin remodeling during endocytosis.
    We find that clathrin coats assemble first on flat membranes to 50% of the coat
    area before they become rapidly and continuously bent, and this mechanism is confirmed
    in three cell lines. We introduce the cooperative curvature model, which is based
    on positive feedback for curvature generation. It accurately describes the measured
    shapes and dynamics of the clathrin coat and could represent a general mechanism
    for clathrin coat remodeling on the plasma membrane."
acknowledgement: We thank the entire Ries and Kaksonen labs for fruitful discussions
  and support. This work was supported by the European Research Council (ERC CoG-724489
  to J. Ries), the National Institutes of Health Common Fund 4D Nucleome Program (Grant
  U01 to J. Ries), the Human Frontier Science Program (RGY0065/2017 to J. Ries), the
  EMBL Interdisciplinary Postdoc Programme (EIPOD) under Marie Curie Actions COFUND
  (Grant 229597 to O. Avinoam), the European Molecular Biology Laboratory (M. Mund,
  A. Tschanz, Y.-L. Wu and J. Ries), and the Swiss National Science Foundation (grant
  310030B_182825 and NCCR Chemical Biology to M. Kaksonen). O. Avinoam is an incumbent
  of the Miriam Berman Presidential Development Chair.
article_number: e202206038
article_processing_charge: No
article_type: original
author:
- first_name: Markus
  full_name: Mund, Markus
  last_name: Mund
- first_name: Aline
  full_name: Tschanz, Aline
  last_name: Tschanz
- first_name: Yu-Le
  full_name: Wu, Yu-Le
  last_name: Wu
- first_name: Felix F
  full_name: Frey, Felix F
  id: a0270b37-8f1a-11ec-95c7-8e710c59a4f3
  last_name: Frey
  orcid: 0000-0001-8501-6017
- first_name: Johanna L.
  full_name: Mehl, Johanna L.
  last_name: Mehl
- first_name: Marko
  full_name: Kaksonen, Marko
  last_name: Kaksonen
- first_name: Ori
  full_name: Avinoam, Ori
  last_name: Avinoam
- first_name: Ulrich S.
  full_name: Schwarz, Ulrich S.
  last_name: Schwarz
- first_name: Jonas
  full_name: Ries, Jonas
  last_name: Ries
citation:
  ama: Mund M, Tschanz A, Wu Y-L, et al. Clathrin coats partially preassemble and
    subsequently bend during endocytosis. <i>Journal of Cell Biology</i>. 2023;222(3).
    doi:<a href="https://doi.org/10.1083/jcb.202206038">10.1083/jcb.202206038</a>
  apa: Mund, M., Tschanz, A., Wu, Y.-L., Frey, F. F., Mehl, J. L., Kaksonen, M., …
    Ries, J. (2023). Clathrin coats partially preassemble and subsequently bend during
    endocytosis. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a
    href="https://doi.org/10.1083/jcb.202206038">https://doi.org/10.1083/jcb.202206038</a>
  chicago: Mund, Markus, Aline Tschanz, Yu-Le Wu, Felix F Frey, Johanna L. Mehl, Marko
    Kaksonen, Ori Avinoam, Ulrich S. Schwarz, and Jonas Ries. “Clathrin Coats Partially
    Preassemble and Subsequently Bend during Endocytosis.” <i>Journal of Cell Biology</i>.
    Rockefeller University Press, 2023. <a href="https://doi.org/10.1083/jcb.202206038">https://doi.org/10.1083/jcb.202206038</a>.
  ieee: M. Mund <i>et al.</i>, “Clathrin coats partially preassemble and subsequently
    bend during endocytosis,” <i>Journal of Cell Biology</i>, vol. 222, no. 3. Rockefeller
    University Press, 2023.
  ista: Mund M, Tschanz A, Wu Y-L, Frey FF, Mehl JL, Kaksonen M, Avinoam O, Schwarz
    US, Ries J. 2023. Clathrin coats partially preassemble and subsequently bend during
    endocytosis. Journal of Cell Biology. 222(3), e202206038.
  mla: Mund, Markus, et al. “Clathrin Coats Partially Preassemble and Subsequently
    Bend during Endocytosis.” <i>Journal of Cell Biology</i>, vol. 222, no. 3, e202206038,
    Rockefeller University Press, 2023, doi:<a href="https://doi.org/10.1083/jcb.202206038">10.1083/jcb.202206038</a>.
  short: M. Mund, A. Tschanz, Y.-L. Wu, F.F. Frey, J.L. Mehl, M. Kaksonen, O. Avinoam,
    U.S. Schwarz, J. Ries, Journal of Cell Biology 222 (2023).
date_created: 2024-01-10T10:45:55Z
date_published: 2023-02-03T00:00:00Z
date_updated: 2024-01-16T10:17:05Z
day: '03'
ddc:
- '570'
department:
- _id: AnSa
doi: 10.1083/jcb.202206038
external_id:
  isi:
  - '000978065000001'
  pmid:
  - '36734980'
file:
- access_level: open_access
  checksum: 505d5cac36c14b073b68c7fed1a92bd3
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-16T10:15:09Z
  date_updated: 2024-01-16T10:15:09Z
  file_id: '14811'
  file_name: 2023_JCB_Mund.pdf
  file_size: 5678069
  relation: main_file
  success: 1
file_date_updated: 2024-01-16T10:15:09Z
has_accepted_license: '1'
intvolume: '       222'
isi: 1
issue: '3'
keyword:
- Cell Biology
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
status: public
title: Clathrin coats partially preassemble and subsequently bend during endocytosis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 222
year: '2023'
...
---
_id: '14798'
abstract:
- lang: eng
  text: 'A faithful reproduction of gloss is inherently difficult because of the limited
    dynamic range, peak luminance, and 3D capabilities of display devices. This work
    investigates how the display capabilities affect gloss appearance with respect
    to a real-world reference object. To this end, we employ an accurate imaging pipeline
    to achieve a perceptual gloss match between a virtual and real object presented
    side-by-side on an augmented-reality high-dynamic-range (HDR) stereoscopic display,
    which has not been previously attained to this extent. Based on this precise gloss
    reproduction, we conduct a series of gloss matching experiments to study how gloss
    perception degrades based on individual factors: object albedo, display luminance,
    dynamic range, stereopsis, and tone mapping. We support the study with a detailed
    analysis of individual factors, followed by an in-depth discussion on the observed
    perceptual effects. Our experiments demonstrate that stereoscopic presentation
    has a limited effect on the gloss matching task on our HDR display. However, both
    reduced luminance and dynamic range of the display reduce the perceived gloss.
    This means that the visual system cannot compensate for the changes in gloss appearance
    across luminance (lack of gloss constancy), and the tone mapping operator should
    be carefully selected when reproducing gloss on a low dynamic range (LDR) display.'
acknowledgement: "This work is supported by FWF Lise Meitner (Grant M 3319), Spanish
  Agencia Estatal de Investigación (project PID2022-141539NBI00), European Research
  Council (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (grant agreement\r\nN◦ 725253–EyeCode), Swiss National Science Foundation (Grant
  no. 200502), and academic gifts from Meta. We thank Dmitry Lubyako and Ali Özgür
  Yöntem for building the turntable for our experiment."
article_number: '90'
article_processing_charge: Yes (in subscription journal)
author:
- first_name: Bin
  full_name: Chen, Bin
  last_name: Chen
- first_name: Akshay
  full_name: Jindal, Akshay
  last_name: Jindal
- first_name: Michael
  full_name: Piovarci, Michael
  id: 62E473F4-5C99-11EA-A40E-AF823DDC885E
  last_name: Piovarci
  orcid: 0000-0002-5062-4474
- first_name: Chao
  full_name: Wang, Chao
  last_name: Wang
- first_name: Hans Peter
  full_name: Seidel, Hans Peter
  last_name: Seidel
- first_name: Piotr
  full_name: Didyk, Piotr
  last_name: Didyk
- first_name: Karol
  full_name: Myszkowski, Karol
  last_name: Myszkowski
- first_name: Ana
  full_name: Serrano, Ana
  last_name: Serrano
- first_name: Rafał K.
  full_name: Mantiuk, Rafał K.
  last_name: Mantiuk
citation:
  ama: 'Chen B, Jindal A, Piovarci M, et al. The effect of display capabilities on
    the gloss consistency between real and virtual objects. In: <i>Proceedings of
    the SIGGRAPH Asia 2023 Conference</i>. Association for Computing Machinery; 2023.
    doi:<a href="https://doi.org/10.1145/3610548.3618226">10.1145/3610548.3618226</a>'
  apa: 'Chen, B., Jindal, A., Piovarci, M., Wang, C., Seidel, H. P., Didyk, P., …
    Mantiuk, R. K. (2023). The effect of display capabilities on the gloss consistency
    between real and virtual objects. In <i>Proceedings of the SIGGRAPH Asia 2023
    Conference</i>. Sydney, Australia: Association for Computing Machinery. <a href="https://doi.org/10.1145/3610548.3618226">https://doi.org/10.1145/3610548.3618226</a>'
  chicago: Chen, Bin, Akshay Jindal, Michael Piovarci, Chao Wang, Hans Peter Seidel,
    Piotr Didyk, Karol Myszkowski, Ana Serrano, and Rafał K. Mantiuk. “The Effect
    of Display Capabilities on the Gloss Consistency between Real and Virtual Objects.”
    In <i>Proceedings of the SIGGRAPH Asia 2023 Conference</i>. Association for Computing
    Machinery, 2023. <a href="https://doi.org/10.1145/3610548.3618226">https://doi.org/10.1145/3610548.3618226</a>.
  ieee: B. Chen <i>et al.</i>, “The effect of display capabilities on the gloss consistency
    between real and virtual objects,” in <i>Proceedings of the SIGGRAPH Asia 2023
    Conference</i>, Sydney, Australia, 2023.
  ista: 'Chen B, Jindal A, Piovarci M, Wang C, Seidel HP, Didyk P, Myszkowski K, Serrano
    A, Mantiuk RK. 2023. The effect of display capabilities on the gloss consistency
    between real and virtual objects. Proceedings of the SIGGRAPH Asia 2023 Conference.
    SIGGRAPH: Computer Graphics and Interactive Techniques Conference, 90.'
  mla: Chen, Bin, et al. “The Effect of Display Capabilities on the Gloss Consistency
    between Real and Virtual Objects.” <i>Proceedings of the SIGGRAPH Asia 2023 Conference</i>,
    90, Association for Computing Machinery, 2023, doi:<a href="https://doi.org/10.1145/3610548.3618226">10.1145/3610548.3618226</a>.
  short: B. Chen, A. Jindal, M. Piovarci, C. Wang, H.P. Seidel, P. Didyk, K. Myszkowski,
    A. Serrano, R.K. Mantiuk, in:, Proceedings of the SIGGRAPH Asia 2023 Conference,
    Association for Computing Machinery, 2023.
conference:
  end_date: 2023-12-15
  location: Sydney, Australia
  name: 'SIGGRAPH: Computer Graphics and Interactive Techniques Conference'
  start_date: 2023-12-12
date_created: 2024-01-14T23:00:57Z
date_published: 2023-12-10T00:00:00Z
date_updated: 2024-01-17T08:38:35Z
day: '10'
ddc:
- '000'
department:
- _id: BeBi
doi: 10.1145/3610548.3618226
file:
- access_level: open_access
  checksum: 8abe27432ed222b50d1af9b3388db1b0
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-17T08:33:06Z
  date_updated: 2024-01-17T08:33:06Z
  file_id: '14823'
  file_name: 2023_SA_Chen.pdf
  file_size: 95967451
  relation: main_file
  success: 1
file_date_updated: 2024-01-17T08:33:06Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: eb901961-77a9-11ec-83b8-f5c883a62027
  grant_number: M03319
  name: Perception-Aware Appearance Fabrication
publication: Proceedings of the SIGGRAPH Asia 2023 Conference
publication_identifier:
  isbn:
  - '9798400703157'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: The effect of display capabilities on the gloss consistency between real and
  virtual objects
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '14812'
abstract:
- lang: eng
  text: This repository contains the code and VCF files needed to conduct the analyses
    in our MS. Each folder contains a readMe document explaining the nature of each
    file and dataset and the results and analyses that they relate to. The same anlaysis
    code (but not VCF files) is also available at https://github.com/seanstankowski/Littorina_reproductive_mode
article_processing_charge: No
author:
- first_name: Sean
  full_name: Stankowski, Sean
  id: 43161670-5719-11EA-8025-FABC3DDC885E
  last_name: Stankowski
citation:
  ama: 'Stankowski S. Data and code for: The genetic architecture of a recent transition
    to live-bearing in marine snails. 2023. doi:<a href="https://doi.org/10.5281/ZENODO.8318995">10.5281/ZENODO.8318995</a>'
  apa: 'Stankowski, S. (2023). Data and code for: The genetic architecture of a recent
    transition to live-bearing in marine snails. Zenodo. <a href="https://doi.org/10.5281/ZENODO.8318995">https://doi.org/10.5281/ZENODO.8318995</a>'
  chicago: 'Stankowski, Sean. “Data and Code for: The Genetic Architecture of a Recent
    Transition to Live-Bearing in Marine Snails.” Zenodo, 2023. <a href="https://doi.org/10.5281/ZENODO.8318995">https://doi.org/10.5281/ZENODO.8318995</a>.'
  ieee: 'S. Stankowski, “Data and code for: The genetic architecture of a recent transition
    to live-bearing in marine snails.” Zenodo, 2023.'
  ista: 'Stankowski S. 2023. Data and code for: The genetic architecture of a recent
    transition to live-bearing in marine snails, Zenodo, <a href="https://doi.org/10.5281/ZENODO.8318995">10.5281/ZENODO.8318995</a>.'
  mla: 'Stankowski, Sean. <i>Data and Code for: The Genetic Architecture of a Recent
    Transition to Live-Bearing in Marine Snails</i>. Zenodo, 2023, doi:<a href="https://doi.org/10.5281/ZENODO.8318995">10.5281/ZENODO.8318995</a>.'
  short: S. Stankowski, (2023).
contributor:
- first_name: Zusanna
  last_name: Zagrodzka
- first_name: Martin
  last_name: Garlovsky
- first_name: Arka
  id: 6AAB2240-CA9A-11E9-9C1A-D9D1E5697425
  last_name: Pal
  orcid: 0000-0002-4530-8469
- first_name: Daria
  id: 428A94B0-F248-11E8-B48F-1D18A9856A87
  last_name: Shipilina
  orcid: 0000-0002-1145-9226
- first_name: Diego Fernando
  id: ae681a14-dc74-11ea-a0a7-c6ef18161701
  last_name: Garcia Castillo
- first_name: Hila
  id: d6ab5470-2fb3-11ed-8633-986a9b84edac
  last_name: Lifchitz
- first_name: Alan
  last_name: Le Moan
- first_name: Erica
  last_name: Leder
- first_name: James
  last_name: Reeve
- first_name: Kerstin
  last_name: Johannesson
- first_name: Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: Roger
  last_name: Butlin
date_created: 2024-01-16T10:23:01Z
date_published: 2023-09-05T00:00:00Z
date_updated: 2025-08-12T09:04:30Z
day: '05'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.5281/ZENODO.8318995
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.8318995
month: '09'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '14796'
    relation: used_in_publication
    status: for_moderation
status: public
title: 'Data and code for: The genetic architecture of a recent transition to live-bearing
  in marine snails'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '14815'
abstract:
- lang: eng
  text: In the last few years, various communication compression techniques have emerged
    as an indispensable tool helping to alleviate the communication bottleneck in
    distributed learning. However, despite the fact biased compressors often show
    superior performance in practice when compared to the much more studied and understood
    unbiased compressors, very little is known about them. In this work we study three
    classes of biased compression operators, two of which are new, and their performance
    when applied to (stochastic) gradient descent and distributed (stochastic) gradient
    descent. We show for the first time that biased compressors can lead to linear
    convergence rates both in the single node and distributed settings. We prove that
    distributed compressed SGD method, employed with error feedback mechanism, enjoys
    the ergodic rate O(δLexp[−μKδL]+(C+δD)Kμ), where δ≥1 is a compression parameter
    which grows when more compression is applied, L and μ are the smoothness and strong
    convexity constants, C captures stochastic gradient noise (C=0 if full gradients
    are computed on each node) and D captures the variance of the gradients at the
    optimum (D=0 for over-parameterized models). Further, via a theoretical study
    of several synthetic and empirical distributions of communicated gradients, we
    shed light on why and by how much biased compressors outperform their unbiased
    variants. Finally, we propose several new biased compressors with promising theoretical
    guarantees and practical performance.
acknowledgement: 'The work in Sections 1-5 was conducted while A. Beznosikov was a
  research intern in the Optimizationand Machine Learning Lab of Peter Richtárik at
  KAUST; this visit was funded by the KAUST Baseline Research Funding Scheme. The
  work of A. Beznosikov in Section 6 was conducted in Skoltech and was supported by
  Ministry of Science and Higher Education grant No. 075-10-2021-068. '
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Aleksandr
  full_name: Beznosikov, Aleksandr
  last_name: Beznosikov
- first_name: Samuel
  full_name: Horvath, Samuel
  last_name: Horvath
- first_name: Peter
  full_name: Richtarik, Peter
  last_name: Richtarik
- first_name: Mher
  full_name: Safaryan, Mher
  id: dd546b39-0804-11ed-9c55-ef075c39778d
  last_name: Safaryan
citation:
  ama: Beznosikov A, Horvath S, Richtarik P, Safaryan M. On biased compression for
    distributed learning. <i>Journal of Machine Learning Research</i>. 2023;24:1-50.
  apa: Beznosikov, A., Horvath, S., Richtarik, P., &#38; Safaryan, M. (2023). On biased
    compression for distributed learning. <i>Journal of Machine Learning Research</i>.
    Journal of Machine Learning Research.
  chicago: Beznosikov, Aleksandr, Samuel Horvath, Peter Richtarik, and Mher Safaryan.
    “On Biased Compression for Distributed Learning.” <i>Journal of Machine Learning
    Research</i>. Journal of Machine Learning Research, 2023.
  ieee: A. Beznosikov, S. Horvath, P. Richtarik, and M. Safaryan, “On biased compression
    for distributed learning,” <i>Journal of Machine Learning Research</i>, vol. 24.
    Journal of Machine Learning Research, pp. 1–50, 2023.
  ista: Beznosikov A, Horvath S, Richtarik P, Safaryan M. 2023. On biased compression
    for distributed learning. Journal of Machine Learning Research. 24, 1–50.
  mla: Beznosikov, Aleksandr, et al. “On Biased Compression for Distributed Learning.”
    <i>Journal of Machine Learning Research</i>, vol. 24, Journal of Machine Learning
    Research, 2023, pp. 1–50.
  short: A. Beznosikov, S. Horvath, P. Richtarik, M. Safaryan, Journal of Machine
    Learning Research 24 (2023) 1–50.
date_created: 2024-01-16T12:13:36Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2024-01-17T09:14:13Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
external_id:
  arxiv:
  - '2002.12410'
  isi:
  - '001111578500001'
file:
- access_level: open_access
  checksum: c50f2b9db53938b755e30a085f464059
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-16T12:13:27Z
  date_updated: 2024-01-16T12:13:27Z
  file_id: '14816'
  file_name: 2023_JMLR_Beznosikov.pdf
  file_size: 1510993
  relation: main_file
  success: 1
file_date_updated: 2024-01-16T12:13:27Z
has_accepted_license: '1'
intvolume: '        24'
isi: 1
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 1-50
publication: Journal of Machine Learning Research
publication_identifier:
  eissn:
  - 1533-7928
publication_status: published
publisher: Journal of Machine Learning Research
quality_controlled: '1'
status: public
title: On biased compression for distributed learning
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2023'
...
---
_id: '14827'
abstract:
- lang: eng
  text: Understanding complex living systems, which are fundamentally constrained
    by physical phenomena, requires combining experimental data with theoretical physical
    and mathematical models. To develop such models, collaborations between experimental
    cell biologists and theoreticians are increasingly important but these two groups
    often face challenges achieving mutual understanding. To help navigate these challenges,
    this Perspective discusses different modelling approaches, including bottom-up
    hypothesis-driven and top-down data-driven models, and highlights their strengths
    and applications. Using cell mechanics as an example, we explore the integration
    of specific physical models with experimental data from the molecular, cellular
    and tissue level up to multiscale input. We also emphasize the importance of constraining
    model complexity and outline strategies for crosstalk between experimental design
    and model development. Furthermore, we highlight how physical models can provide
    conceptual insights and produce unifying and generalizable frameworks for biological
    phenomena. Overall, this Perspective aims to promote fruitful collaborations that
    advance our understanding of complex biological systems.
acknowledgement: "We thank Prisca Liberali and Edouard Hannezo for many inspiring
  discussions; Mehmet Can Uçar, Nicoletta I Petridou and Qiutan Yang for a critical
  reading of the manuscript, and Claudia Flandoli for the artwork in Figs 2 and 3.
  We would also like to thank The Company of Biologists for the opportunity to attend
  the 2023 workshop on Collective Cell Migration, and all workshop participants for
  discussions.\r\nC.S. was supported by a European Molecular Biology Organization
  (EMBO) Postdoctoral Fellowship (ALTF 660-2020) and Human Frontier Science Program
  (HFSP) Postdoctoral fellowship (LT000746/2021-L). D.B.B. was supported by the NOMIS
  Foundation as a NOMIS Fellow and by an EMBO Postdoctoral Fellowship (ALTF 343-2022)."
article_number: jcs.261515
article_processing_charge: No
article_type: original
author:
- first_name: Cornelia
  full_name: Schwayer, Cornelia
  id: 3436488C-F248-11E8-B48F-1D18A9856A87
  last_name: Schwayer
  orcid: 0000-0001-5130-2226
- first_name: David
  full_name: Brückner, David
  id: e1e86031-6537-11eb-953a-f7ab92be508d
  last_name: Brückner
  orcid: 0000-0001-7205-2975
citation:
  ama: Schwayer C, Brückner D. Connecting theory and experiment in cell and tissue
    mechanics. <i>Journal of Cell Science</i>. 2023;136(24). doi:<a href="https://doi.org/10.1242/jcs.261515">10.1242/jcs.261515</a>
  apa: Schwayer, C., &#38; Brückner, D. (2023). Connecting theory and experiment in
    cell and tissue mechanics. <i>Journal of Cell Science</i>. The Company of Biologists.
    <a href="https://doi.org/10.1242/jcs.261515">https://doi.org/10.1242/jcs.261515</a>
  chicago: Schwayer, Cornelia, and David Brückner. “Connecting Theory and Experiment
    in Cell and Tissue Mechanics.” <i>Journal of Cell Science</i>. The Company of
    Biologists, 2023. <a href="https://doi.org/10.1242/jcs.261515">https://doi.org/10.1242/jcs.261515</a>.
  ieee: C. Schwayer and D. Brückner, “Connecting theory and experiment in cell and
    tissue mechanics,” <i>Journal of Cell Science</i>, vol. 136, no. 24. The Company
    of Biologists, 2023.
  ista: Schwayer C, Brückner D. 2023. Connecting theory and experiment in cell and
    tissue mechanics. Journal of Cell Science. 136(24), jcs. 261515.
  mla: Schwayer, Cornelia, and David Brückner. “Connecting Theory and Experiment in
    Cell and Tissue Mechanics.” <i>Journal of Cell Science</i>, vol. 136, no. 24,
    jcs. 261515, The Company of Biologists, 2023, doi:<a href="https://doi.org/10.1242/jcs.261515">10.1242/jcs.261515</a>.
  short: C. Schwayer, D. Brückner, Journal of Cell Science 136 (2023).
date_created: 2024-01-17T12:46:55Z
date_published: 2023-12-27T00:00:00Z
date_updated: 2024-01-22T13:35:48Z
day: '27'
department:
- _id: EdHa
- _id: CaHe
doi: 10.1242/jcs.261515
external_id:
  pmid:
  - '38149871'
intvolume: '       136'
issue: '24'
keyword:
- Cell Biology
language:
- iso: eng
month: '12'
oa_version: None
pmid: 1
project:
- _id: 34e2a5b5-11ca-11ed-8bc3-b2265616ef0b
  grant_number: 343-2022
  name: A mechano-chemical theory for stem cell fate decisions in organoid development
publication: Journal of Cell Science
publication_identifier:
  eissn:
  - 1477-9137
  issn:
  - 0021-9533
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Connecting theory and experiment in cell and tissue mechanics
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 136
year: '2023'
...
---
_id: '14829'
abstract:
- lang: eng
  text: 'This paper explores a modular design architecture aimed at helping blockchains
    (and other SMR implementation) to scale to a very large number of processes. This
    comes in contrast to existing monolithic architectures that interleave transaction
    dissemination, ordering, and execution in a single functionality. To achieve this
    we first split the monolith to multiple layers which can use existing distributed
    computing primitives. The exact specifications of the data dissemination part
    are formally defined by the Proof of Availability & Retrieval (PoA &R) abstraction.
    Solutions to the PoA &R problem contain two related sub-protocols: one that “pushes”
    information into the network and another that “pulls” this information. Regarding
    the latter, there is a dearth of research literature which is rectified in this
    paper. We present a family of pulling sub-protocols and rigorously analyze them.
    Extensive simulations support the theoretical claims of efficiency and robustness
    in case of a very large number of players. Finally, actual implementation and
    deployment on a small number of machines (roughly the size of several industrial
    systems) demonstrates the viability of the architecture’s paradigm.'
acknowledgement: 'This work is partially supported by Meta. Eleftherios Kokoris-Kogias
  is partially supported by Austrian Science Fund (FWF) grant No: F8512-N. Shir Cohen
  is supported by the Adams Fellowship Program of the Israel Academy of Sciences and
  Humanities.'
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Shir
  full_name: Cohen, Shir
  last_name: Cohen
- first_name: Guy
  full_name: Goren, Guy
  last_name: Goren
- first_name: Eleftherios
  full_name: Kokoris Kogias, Eleftherios
  id: f5983044-d7ef-11ea-ac6d-fd1430a26d30
  last_name: Kokoris Kogias
- first_name: Alberto
  full_name: Sonnino, Alberto
  last_name: Sonnino
- first_name: Alexander
  full_name: Spiegelman, Alexander
  last_name: Spiegelman
citation:
  ama: 'Cohen S, Goren G, Kokoris Kogias E, Sonnino A, Spiegelman A. Proof of availability
    and retrieval in a modular blockchain architecture. In: <i>27th International
    Conference on Financial Cryptography and Data Security</i>. Vol 13951. Springer
    Nature; 2023:36-53. doi:<a href="https://doi.org/10.1007/978-3-031-47751-5_3">10.1007/978-3-031-47751-5_3</a>'
  apa: 'Cohen, S., Goren, G., Kokoris Kogias, E., Sonnino, A., &#38; Spiegelman, A.
    (2023). Proof of availability and retrieval in a modular blockchain architecture.
    In <i>27th International Conference on Financial Cryptography and Data Security</i>
    (Vol. 13951, pp. 36–53). Bol, Brac, Croatia: Springer Nature. <a href="https://doi.org/10.1007/978-3-031-47751-5_3">https://doi.org/10.1007/978-3-031-47751-5_3</a>'
  chicago: Cohen, Shir, Guy Goren, Eleftherios Kokoris Kogias, Alberto Sonnino, and
    Alexander Spiegelman. “Proof of Availability and Retrieval in a Modular Blockchain
    Architecture.” In <i>27th International Conference on Financial Cryptography and
    Data Security</i>, 13951:36–53. Springer Nature, 2023. <a href="https://doi.org/10.1007/978-3-031-47751-5_3">https://doi.org/10.1007/978-3-031-47751-5_3</a>.
  ieee: S. Cohen, G. Goren, E. Kokoris Kogias, A. Sonnino, and A. Spiegelman, “Proof
    of availability and retrieval in a modular blockchain architecture,” in <i>27th
    International Conference on Financial Cryptography and Data Security</i>, Bol,
    Brac, Croatia, 2023, vol. 13951, pp. 36–53.
  ista: 'Cohen S, Goren G, Kokoris Kogias E, Sonnino A, Spiegelman A. 2023. Proof
    of availability and retrieval in a modular blockchain architecture. 27th International
    Conference on Financial Cryptography and Data Security. FC: Financial Cryptography
    and Data Security, LNCS, vol. 13951, 36–53.'
  mla: Cohen, Shir, et al. “Proof of Availability and Retrieval in a Modular Blockchain
    Architecture.” <i>27th International Conference on Financial Cryptography and
    Data Security</i>, vol. 13951, Springer Nature, 2023, pp. 36–53, doi:<a href="https://doi.org/10.1007/978-3-031-47751-5_3">10.1007/978-3-031-47751-5_3</a>.
  short: S. Cohen, G. Goren, E. Kokoris Kogias, A. Sonnino, A. Spiegelman, in:, 27th
    International Conference on Financial Cryptography and Data Security, Springer
    Nature, 2023, pp. 36–53.
conference:
  end_date: 2023-05-05
  location: Bol, Brac, Croatia
  name: 'FC: Financial Cryptography and Data Security'
  start_date: 2023-05-01
date_created: 2024-01-18T07:41:12Z
date_published: 2023-12-01T00:00:00Z
date_updated: 2024-01-22T13:58:07Z
day: '01'
department:
- _id: ElKo
doi: 10.1007/978-3-031-47751-5_3
intvolume: '     13951'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://fc23.ifca.ai/preproceedings/150.pdf
month: '12'
oa: 1
oa_version: Submitted Version
page: 36-53
project:
- _id: 34a4ce89-11ca-11ed-8bc3-8cc37fb6e11f
  grant_number: F8512
  name: Secure Network and Hardware for Efficient Blockchains
publication: 27th International Conference on Financial Cryptography and Data Security
publication_identifier:
  eisbn:
  - '9783031477515'
  eissn:
  - 1611-3349
  isbn:
  - '9783031477508'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Proof of availability and retrieval in a modular blockchain architecture
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13951
year: '2023'
...
---
_id: '14830'
abstract:
- lang: eng
  text: We study the problem of learning controllers for discrete-time non-linear
    stochastic dynamical systems with formal reach-avoid guarantees. This work presents
    the first method for providing formal reach-avoid guarantees, which combine and
    generalize stability and safety guarantees, with a tolerable probability threshold
    p in [0,1] over the infinite time horizon. Our method leverages advances in machine
    learning literature and it represents formal certificates as neural networks.
    In particular, we learn a certificate in the form of a reach-avoid supermartingale
    (RASM), a novel notion that we introduce in this work. Our RASMs provide reachability
    and avoidance guarantees by imposing constraints on what can be viewed as a stochastic
    extension of level sets of Lyapunov functions for deterministic systems. Our approach
    solves several important problems -- it can be used to learn a control policy
    from scratch, to verify a reach-avoid specification for a fixed control policy,
    or to fine-tune a pre-trained policy if it does not satisfy the reach-avoid specification.
    We validate our approach on 3 stochastic non-linear reinforcement learning tasks.
acknowledgement: This work was supported in part by the ERC-2020-AdG 101020093, ERC
  CoG 863818 (FoRM-SMArt) and the European Union’s Horizon 2020 research and innovation
  programme under the Marie Skłodowska-Curie Grant Agreement No. 665385.
article_processing_charge: No
arxiv: 1
author:
- first_name: Dorde
  full_name: Zikelic, Dorde
  id: 294AA7A6-F248-11E8-B48F-1D18A9856A87
  last_name: Zikelic
  orcid: 0000-0002-4681-1699
- first_name: Mathias
  full_name: Lechner, Mathias
  id: 3DC22916-F248-11E8-B48F-1D18A9856A87
  last_name: Lechner
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
citation:
  ama: 'Zikelic D, Lechner M, Henzinger TA, Chatterjee K. Learning control policies
    for stochastic systems with reach-avoid guarantees. In: <i>Proceedings of the
    37th AAAI Conference on Artificial Intelligence</i>. Vol 37. Association for the
    Advancement of Artificial Intelligence; 2023:11926-11935. doi:<a href="https://doi.org/10.1609/aaai.v37i10.26407">10.1609/aaai.v37i10.26407</a>'
  apa: 'Zikelic, D., Lechner, M., Henzinger, T. A., &#38; Chatterjee, K. (2023). Learning
    control policies for stochastic systems with reach-avoid guarantees. In <i>Proceedings
    of the 37th AAAI Conference on Artificial Intelligence</i> (Vol. 37, pp. 11926–11935).
    Washington, DC, United States: Association for the Advancement of Artificial Intelligence.
    <a href="https://doi.org/10.1609/aaai.v37i10.26407">https://doi.org/10.1609/aaai.v37i10.26407</a>'
  chicago: Zikelic, Dorde, Mathias Lechner, Thomas A Henzinger, and Krishnendu Chatterjee.
    “Learning Control Policies for Stochastic Systems with Reach-Avoid Guarantees.”
    In <i>Proceedings of the 37th AAAI Conference on Artificial Intelligence</i>,
    37:11926–35. Association for the Advancement of Artificial Intelligence, 2023.
    <a href="https://doi.org/10.1609/aaai.v37i10.26407">https://doi.org/10.1609/aaai.v37i10.26407</a>.
  ieee: D. Zikelic, M. Lechner, T. A. Henzinger, and K. Chatterjee, “Learning control
    policies for stochastic systems with reach-avoid guarantees,” in <i>Proceedings
    of the 37th AAAI Conference on Artificial Intelligence</i>, Washington, DC, United
    States, 2023, vol. 37, no. 10, pp. 11926–11935.
  ista: 'Zikelic D, Lechner M, Henzinger TA, Chatterjee K. 2023. Learning control
    policies for stochastic systems with reach-avoid guarantees. Proceedings of the
    37th AAAI Conference on Artificial Intelligence. AAAI: Conference on Artificial
    Intelligence vol. 37, 11926–11935.'
  mla: Zikelic, Dorde, et al. “Learning Control Policies for Stochastic Systems with
    Reach-Avoid Guarantees.” <i>Proceedings of the 37th AAAI Conference on Artificial
    Intelligence</i>, vol. 37, no. 10, Association for the Advancement of Artificial
    Intelligence, 2023, pp. 11926–35, doi:<a href="https://doi.org/10.1609/aaai.v37i10.26407">10.1609/aaai.v37i10.26407</a>.
  short: D. Zikelic, M. Lechner, T.A. Henzinger, K. Chatterjee, in:, Proceedings of
    the 37th AAAI Conference on Artificial Intelligence, Association for the Advancement
    of Artificial Intelligence, 2023, pp. 11926–11935.
conference:
  end_date: 2023-02-14
  location: Washington, DC, United States
  name: 'AAAI: Conference on Artificial Intelligence'
  start_date: 2023-02-07
date_created: 2024-01-18T07:44:31Z
date_published: 2023-06-26T00:00:00Z
date_updated: 2025-07-14T09:10:02Z
day: '26'
department:
- _id: ToHe
- _id: KrCh
doi: 10.1609/aaai.v37i10.26407
ec_funded: 1
external_id:
  arxiv:
  - '2210.05308'
intvolume: '        37'
issue: '10'
keyword:
- General Medicine
language:
- iso: eng
month: '06'
oa_version: Preprint
page: 11926-11935
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: Proceedings of the 37th AAAI Conference on Artificial Intelligence
publication_identifier:
  eissn:
  - 2374-3468
  issn:
  - 2159-5399
publication_status: published
publisher: Association for the Advancement of Artificial Intelligence
quality_controlled: '1'
related_material:
  record:
  - id: '14600'
    relation: earlier_version
    status: public
status: public
title: Learning control policies for stochastic systems with reach-avoid guarantees
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 37
year: '2023'
...
---
_id: '14831'
abstract:
- lang: eng
  text: Catalysis, the acceleration of product formation by a substance that is left
    unchanged, typically results from multiple elementary processes, including diffusion
    of the reactants toward the catalyst, chemical steps, and release of the products.
    While efforts to design catalysts are often focused on accelerating the chemical
    reaction on the catalyst, catalysis is a global property of the catalytic cycle
    that involves all processes. These are controlled by both intrinsic parameters
    such as the composition and shape of the catalyst and extrinsic parameters such
    as the concentration of the chemical species at play. We examine here the conditions
    that catalysis imposes on the different steps of a reaction cycle and the respective
    role of intrinsic and extrinsic parameters of the system on the emergence of catalysis
    by using an approach based on first-passage times. We illustrate this approach
    for various decompositions of a catalytic cycle into elementary steps, including
    non-Markovian decompositions, which are useful when the presence and nature of
    intermediate states are a priori unknown. Our examples cover different types of
    reactions and clarify the constraints on elementary steps and the impact of species
    concentrations on catalysis.
acknowledgement: We acknowledge funding from ANR-22-CE06-0037-02. This work has received
  funding from the European Unions Horizon 2020 research and innovation program under
  the Marie Sklodowska-Curie grant agreement No. 754387.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Yann
  full_name: Sakref, Yann
  last_name: Sakref
- first_name: Maitane
  full_name: Muñoz Basagoiti, Maitane
  id: 1a8a7950-82cd-11ed-bd4f-9624c913a607
  last_name: Muñoz Basagoiti
  orcid: 0000-0003-1483-1457
- first_name: Zorana
  full_name: Zeravcic, Zorana
  last_name: Zeravcic
- first_name: Olivier
  full_name: Rivoire, Olivier
  last_name: Rivoire
citation:
  ama: Sakref Y, Muñoz Basagoiti M, Zeravcic Z, Rivoire O. On kinetic constraints
    that catalysis imposes on elementary processes. <i>The Journal of Physical Chemistry
    B</i>. 2023;127(51):10950-10959. doi:<a href="https://doi.org/10.1021/acs.jpcb.3c04627">10.1021/acs.jpcb.3c04627</a>
  apa: Sakref, Y., Muñoz Basagoiti, M., Zeravcic, Z., &#38; Rivoire, O. (2023). On
    kinetic constraints that catalysis imposes on elementary processes. <i>The Journal
    of Physical Chemistry B</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.jpcb.3c04627">https://doi.org/10.1021/acs.jpcb.3c04627</a>
  chicago: Sakref, Yann, Maitane Muñoz Basagoiti, Zorana Zeravcic, and Olivier Rivoire.
    “On Kinetic Constraints That Catalysis Imposes on Elementary Processes.” <i>The
    Journal of Physical Chemistry B</i>. American Chemical Society, 2023. <a href="https://doi.org/10.1021/acs.jpcb.3c04627">https://doi.org/10.1021/acs.jpcb.3c04627</a>.
  ieee: Y. Sakref, M. Muñoz Basagoiti, Z. Zeravcic, and O. Rivoire, “On kinetic constraints
    that catalysis imposes on elementary processes,” <i>The Journal of Physical Chemistry
    B</i>, vol. 127, no. 51. American Chemical Society, pp. 10950–10959, 2023.
  ista: Sakref Y, Muñoz Basagoiti M, Zeravcic Z, Rivoire O. 2023. On kinetic constraints
    that catalysis imposes on elementary processes. The Journal of Physical Chemistry
    B. 127(51), 10950–10959.
  mla: Sakref, Yann, et al. “On Kinetic Constraints That Catalysis Imposes on Elementary
    Processes.” <i>The Journal of Physical Chemistry B</i>, vol. 127, no. 51, American
    Chemical Society, 2023, pp. 10950–59, doi:<a href="https://doi.org/10.1021/acs.jpcb.3c04627">10.1021/acs.jpcb.3c04627</a>.
  short: Y. Sakref, M. Muñoz Basagoiti, Z. Zeravcic, O. Rivoire, The Journal of Physical
    Chemistry B 127 (2023) 10950–10959.
date_created: 2024-01-18T07:47:11Z
date_published: 2023-12-13T00:00:00Z
date_updated: 2024-01-23T07:58:27Z
day: '13'
department:
- _id: AnSa
doi: 10.1021/acs.jpcb.3c04627
external_id:
  arxiv:
  - '2312.15940'
  isi:
  - '001134068000001'
intvolume: '       127'
isi: 1
issue: '51'
keyword:
- Materials Chemistry
- Surfaces
- Coatings and Films
- Physical and Theoretical Chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2312.15940
month: '12'
oa: 1
oa_version: Preprint
page: 10950-10959
publication: The Journal of Physical Chemistry B
publication_identifier:
  eissn:
  - 1520-5207
  issn:
  - 1520-6106
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
status: public
title: On kinetic constraints that catalysis imposes on elementary processes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 127
year: '2023'
...
---
_id: '14833'
abstract:
- lang: eng
  text: Understanding the factors that have shaped the current distributions and diversity
    of species is a central and longstanding aim of evolutionary biology. The recent
    inclusion of genomic data into phylogeographic studies has dramatically improved
    our understanding in organisms where evolutionary relationships have been challenging
    to infer. We used whole-genome sequences to study the phylogeography of the intertidal
    snail Littorina saxatilis, which has successfully colonized and diversified across
    a broad range of coastal environments in the Northern Hemisphere amid repeated
    cycles of glaciation. Building on past studies based on short DNA sequences, we
    used genome-wide data to provide a clearer picture of the relationships among
    samples spanning most of the species natural range. Our results confirm the trans-Atlantic
    colonization of North America from Europe, and have allowed us to identify rough
    locations of glacial refugia and to infer likely routes of colonization within
    Europe. We also investigated the signals in different datasets to account for
    the effects of genomic architecture and non-neutral evolution, which provides
    new insights about diversification of four ecotypes of L. saxatilis (the crab,
    wave, barnacle, and brackish ecotypes) at different spatial scales. Overall, we
    provide a much clearer picture of the biogeography of L. saxatilis, providing
    a foundation for more detailed phylogenomic and demographic studies.
acknowledgement: Isobel Eyres, Richard Turney, Graciela Sotelo, Jenny Larson, and
  Stéphane Loisel helped with the collection and processing of samples. Petri Kemppainen
  kindly provided samples from Trondheim Fjord. Mark Dunning helped with the development
  of bioinformatic pipelines. The analysis of genomic data was conducted on the University
  of Sheffield high-performance computing cluster, ShARC. Funding was provided by
  the Natural Environment Research Council (NERC) and the European Research Council
  (ERC). J.G. was funded by a Juntas Industriales y Navales (JIN) project (Ministerio
  de Ciencia, Innovación y Universidades, code RTI2018-101274-J-I00).
article_number: kzad002
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Sean
  full_name: Stankowski, Sean
  id: 43161670-5719-11EA-8025-FABC3DDC885E
  last_name: Stankowski
- first_name: Zuzanna B
  full_name: Zagrodzka, Zuzanna B
  last_name: Zagrodzka
- first_name: Juan
  full_name: Galindo, Juan
  last_name: Galindo
- first_name: Mauricio
  full_name: Montaño-Rendón, Mauricio
  last_name: Montaño-Rendón
- first_name: Rui
  full_name: Faria, Rui
  last_name: Faria
- first_name: Natalia
  full_name: Mikhailova, Natalia
  last_name: Mikhailova
- first_name: April M H
  full_name: Blakeslee, April M H
  last_name: Blakeslee
- first_name: Einar
  full_name: Arnason, Einar
  last_name: Arnason
- first_name: Thomas
  full_name: Broquet, Thomas
  last_name: Broquet
- first_name: Hernán E
  full_name: Morales, Hernán E
  last_name: Morales
- first_name: John W
  full_name: Grahame, John W
  last_name: Grahame
- first_name: Anja M
  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: Kerstin
  full_name: Johannesson, Kerstin
  last_name: Johannesson
- first_name: Roger K
  full_name: Butlin, Roger K
  last_name: Butlin
citation:
  ama: Stankowski S, Zagrodzka ZB, Galindo J, et al. Whole-genome phylogeography of
    the intertidal snail Littorina saxatilis. <i>Evolutionary Journal of the Linnean
    Society</i>. 2023;2(1). doi:<a href="https://doi.org/10.1093/evolinnean/kzad002">10.1093/evolinnean/kzad002</a>
  apa: Stankowski, S., Zagrodzka, Z. B., Galindo, J., Montaño-Rendón, M., Faria, R.,
    Mikhailova, N., … Butlin, R. K. (2023). Whole-genome phylogeography of the intertidal
    snail Littorina saxatilis. <i>Evolutionary Journal of the Linnean Society</i>.
    Oxford University Press. <a href="https://doi.org/10.1093/evolinnean/kzad002">https://doi.org/10.1093/evolinnean/kzad002</a>
  chicago: Stankowski, Sean, Zuzanna B Zagrodzka, Juan Galindo, Mauricio Montaño-Rendón,
    Rui Faria, Natalia Mikhailova, April M H Blakeslee, et al. “Whole-Genome Phylogeography
    of the Intertidal Snail Littorina Saxatilis.” <i>Evolutionary Journal of the Linnean
    Society</i>. Oxford University Press, 2023. <a href="https://doi.org/10.1093/evolinnean/kzad002">https://doi.org/10.1093/evolinnean/kzad002</a>.
  ieee: S. Stankowski <i>et al.</i>, “Whole-genome phylogeography of the intertidal
    snail Littorina saxatilis,” <i>Evolutionary Journal of the Linnean Society</i>,
    vol. 2, no. 1. Oxford University Press, 2023.
  ista: Stankowski S, Zagrodzka ZB, Galindo J, Montaño-Rendón M, Faria R, Mikhailova
    N, Blakeslee AMH, Arnason E, Broquet T, Morales HE, Grahame JW, Westram AM, Johannesson
    K, Butlin RK. 2023. Whole-genome phylogeography of the intertidal snail Littorina
    saxatilis. Evolutionary Journal of the Linnean Society. 2(1), kzad002.
  mla: Stankowski, Sean, et al. “Whole-Genome Phylogeography of the Intertidal Snail
    Littorina Saxatilis.” <i>Evolutionary Journal of the Linnean Society</i>, vol.
    2, no. 1, kzad002, Oxford University Press, 2023, doi:<a href="https://doi.org/10.1093/evolinnean/kzad002">10.1093/evolinnean/kzad002</a>.
  short: S. Stankowski, Z.B. Zagrodzka, J. Galindo, M. Montaño-Rendón, R. Faria, N.
    Mikhailova, A.M.H. Blakeslee, E. Arnason, T. Broquet, H.E. Morales, J.W. Grahame,
    A.M. Westram, K. Johannesson, R.K. Butlin, Evolutionary Journal of the Linnean
    Society 2 (2023).
date_created: 2024-01-18T07:54:10Z
date_published: 2023-08-17T00:00:00Z
date_updated: 2024-01-23T08:13:43Z
day: '17'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1093/evolinnean/kzad002
file:
- access_level: open_access
  checksum: ba6f9102d3a9fe6631c4fa398c5e4313
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-23T08:10:00Z
  date_updated: 2024-01-23T08:10:00Z
  file_id: '14875'
  file_name: 2023_EvolJourLinneanSociety_Stankowski.pdf
  file_size: 3408944
  relation: main_file
  success: 1
file_date_updated: 2024-01-23T08:10:00Z
has_accepted_license: '1'
intvolume: '         2'
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '08'
oa: 1
oa_version: Published Version
publication: Evolutionary Journal of the Linnean Society
publication_identifier:
  eissn:
  - 2752-938X
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: Whole-genome phylogeography of the intertidal snail Littorina saxatilis
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2023'
...
---
_id: '14835'
abstract:
- lang: ger
  text: Aromatische Seitenketten sind wichtige Indikatoren für die Plastizität von
    Proteinen und bilden oft entscheidende Kontakte bei Protein‐Protein‐Wechselwirkungen.
    Wir untersuchten aromatische Reste in den beiden strukturell homologen cross‐β
    Amyloidfibrillen HET‐s und HELLF mit Hilfe eines spezifischen Ansatzes zur Isotopenmarkierung
    und Festkörper NMR mit Drehung am magischen Winkel. Das dynamische Verhalten der
    aromatischen Reste Phe und Tyr deutet darauf hin, dass der hydrophobe Amyloidkern
    starr ist und keine Anzeichen von “atmenden Bewegungen” auf einer Zeitskala von
    Hunderten von Millisekunden zeigt. Aromatische Reste, die exponiert an der Fibrillenoberfläche
    sitzen, haben zwar eine starre Ringachse, weisen aber Ringflips auf verschiedenen
    Zeitskalen von Nanosekunden bis Mikrosekunden auf. Unser Ansatz bietet einen direkten
    Einblick in die Bewegungen des hydrophoben Kerns und ermöglicht eine bessere Bewertung
    der Konformationsheterogenität, die aus einem NMR‐Strukturensemble einer solchen
    Cross‐β‐Amyloidstruktur hervorgeht.
acknowledgement: Wir danken Albert A. Smith (Leipzig) für aufschlussreiche Diskussionen.
  Diese Arbeit wurde mit Mitteln des Europäischen Forschungsrats (StG-2012-311318
  an P.S.) unterstützt und nutzte die Plattformen des Grenoble Instruct-ERIC Center
  (ISBG; UMS 3518 CNRS-CEA-UJF-EMBL) im Rahmen der Grenoble Partnership for Structural
  Biology (PSB) sowie die Einrichtungen und das Fachwissen der Biophysical and Structural
  Chemistry Platform (BPCS) am IECB, CNRS UAR3033, INSERM US001 und der Universität
  Bordeaux.
article_number: e202219314
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Lea Marie
  full_name: Becker, Lea Marie
  id: 36336939-eb97-11eb-a6c2-c83f1214ca79
  last_name: Becker
  orcid: 0000-0002-6401-5151
- first_name: Mélanie
  full_name: Berbon, Mélanie
  last_name: Berbon
- first_name: Alicia
  full_name: Vallet, Alicia
  last_name: Vallet
- first_name: Axelle
  full_name: Grelard, Axelle
  last_name: Grelard
- first_name: Estelle
  full_name: Morvan, Estelle
  last_name: Morvan
- first_name: Benjamin
  full_name: Bardiaux, Benjamin
  last_name: Bardiaux
- first_name: Roman
  full_name: Lichtenecker, Roman
  last_name: Lichtenecker
- first_name: Matthias
  full_name: Ernst, Matthias
  last_name: Ernst
- first_name: Antoine
  full_name: Loquet, Antoine
  last_name: Loquet
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
citation:
  ama: Becker LM, Berbon M, Vallet A, et al. Der starre Kern und die flexible Oberfläche
    von Amyloidfibrillen – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen
    Resten. <i>Angewandte Chemie</i>. 2023;135(19). doi:<a href="https://doi.org/10.1002/ange.202219314">10.1002/ange.202219314</a>
  apa: Becker, L. M., Berbon, M., Vallet, A., Grelard, A., Morvan, E., Bardiaux, B.,
    … Schanda, P. (2023). Der starre Kern und die flexible Oberfläche von Amyloidfibrillen
    – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen Resten. <i>Angewandte
    Chemie</i>. Wiley. <a href="https://doi.org/10.1002/ange.202219314">https://doi.org/10.1002/ange.202219314</a>
  chicago: Becker, Lea Marie, Mélanie Berbon, Alicia Vallet, Axelle Grelard, Estelle
    Morvan, Benjamin Bardiaux, Roman Lichtenecker, Matthias Ernst, Antoine Loquet,
    and Paul Schanda. “Der starre Kern und die flexible Oberfläche von Amyloidfibrillen
    – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen Resten.” <i>Angewandte
    Chemie</i>. Wiley, 2023. <a href="https://doi.org/10.1002/ange.202219314">https://doi.org/10.1002/ange.202219314</a>.
  ieee: L. M. Becker <i>et al.</i>, “Der starre Kern und die flexible Oberfläche von
    Amyloidfibrillen – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen Resten,”
    <i>Angewandte Chemie</i>, vol. 135, no. 19. Wiley, 2023.
  ista: Becker LM, Berbon M, Vallet A, Grelard A, Morvan E, Bardiaux B, Lichtenecker
    R, Ernst M, Loquet A, Schanda P. 2023. Der starre Kern und die flexible Oberfläche
    von Amyloidfibrillen – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen
    Resten. Angewandte Chemie. 135(19), e202219314.
  mla: Becker, Lea Marie, et al. “Der starre Kern und die flexible Oberfläche von
    Amyloidfibrillen – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen Resten.”
    <i>Angewandte Chemie</i>, vol. 135, no. 19, e202219314, Wiley, 2023, doi:<a href="https://doi.org/10.1002/ange.202219314">10.1002/ange.202219314</a>.
  short: L.M. Becker, M. Berbon, A. Vallet, A. Grelard, E. Morvan, B. Bardiaux, R.
    Lichtenecker, M. Ernst, A. Loquet, P. Schanda, Angewandte Chemie 135 (2023).
date_created: 2024-01-18T10:01:01Z
date_published: 2023-05-02T00:00:00Z
date_updated: 2024-01-23T12:23:35Z
day: '02'
ddc:
- '540'
department:
- _id: PaSc
doi: 10.1002/ange.202219314
file:
- access_level: open_access
  checksum: 98e68d370159f7be52a3d7c8a8ee1198
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-23T08:57:01Z
  date_updated: 2024-01-23T08:57:01Z
  file_id: '14876'
  file_name: 2023_AngewChem_Becker.pdf
  file_size: 1004676
  relation: main_file
  success: 1
file_date_updated: 2024-01-23T08:57:01Z
has_accepted_license: '1'
intvolume: '       135'
issue: '19'
keyword:
- General Medicine
language:
- iso: ger
month: '05'
oa: 1
oa_version: Published Version
publication: Angewandte Chemie
publication_identifier:
  eissn:
  - 1521-3757
  issn:
  - 0044-8249
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Der starre Kern und die flexible Oberfläche von Amyloidfibrillen – Magic‐Angle‐Spinning
  NMR Spektroskopie von aromatischen Resten
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 135
year: '2023'
...
---
_id: '14844'
abstract:
- lang: eng
  text: 'Many cell functions require a concerted effort from multiple membrane proteins,
    for example, for signaling, cell division, and endocytosis. One contribution to
    their successful self-organization stems from the membrane deformations that these
    proteins induce. While the pairwise interaction potential of two membrane-deforming
    spheres has recently been measured, membrane-deformation-induced interactions
    have been predicted to be nonadditive, and hence their collective behavior cannot
    be deduced from this measurement. We here employ a colloidal model system consisting
    of adhesive spheres and giant unilamellar vesicles to test these predictions by
    measuring the interaction potential of the simplest case of three membrane-deforming,
    spherical particles. We quantify their interactions and arrangements and, for
    the first time, experimentally confirm and quantify the nonadditive nature of
    membrane-deformation-induced interactions. We furthermore conclude that there
    exist two favorable configurations on the membrane: (1) a linear and (2) a triangular
    arrangement of the three spheres. Using Monte Carlo simulations, we corroborate
    the experimentally observed energy minima and identify a lowering of the membrane
    deformation as the cause for the observed configurations. The high symmetry of
    the preferred arrangements for three particles suggests that arrangements of many
    membrane-deforming objects might follow simple rules.'
acknowledgement: We gratefully acknowledge useful discussions with Casper van der
  Wel, help by Yogesh Shelke with PAA coverslip preparation, and support by Rachel
  Doherty with particle functionalization. A.A. and D.J.K. would like to thank Timon
  Idema and George Dadunashvili for initial attempts to simulate the experimental
  system. D.J.K. would like to thank the physics department at Leiden University for
  funding the PhD position of A.A. B.M. and A.Š. acknowledge funding by the European
  Union’s Horizon 2020 research and innovation programme (ERC starting grant no. 802960).
article_processing_charge: No
article_type: original
author:
- first_name: Ali
  full_name: Azadbakht, Ali
  last_name: Azadbakht
- first_name: Billie
  full_name: Meadowcroft, Billie
  id: a4725fd6-932b-11ed-81e2-c098c7f37ae1
  last_name: Meadowcroft
  orcid: 0000-0003-3441-1337
- first_name: Juraj
  full_name: Majek, Juraj
  id: 3e6d9473-f38e-11ec-8ae0-c4e05a8aa9e1
  last_name: Majek
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
- first_name: Daniela J.
  full_name: Kraft, Daniela J.
  last_name: Kraft
citation:
  ama: Azadbakht A, Meadowcroft B, Majek J, Šarić A, Kraft DJ. Nonadditivity in interactions
    between three membrane-wrapped colloidal spheres. <i>Biophysical Journal</i>.
    doi:<a href="https://doi.org/10.1016/j.bpj.2023.12.020">10.1016/j.bpj.2023.12.020</a>
  apa: Azadbakht, A., Meadowcroft, B., Majek, J., Šarić, A., &#38; Kraft, D. J. (n.d.).
    Nonadditivity in interactions between three membrane-wrapped colloidal spheres.
    <i>Biophysical Journal</i>. Elsevier. <a href="https://doi.org/10.1016/j.bpj.2023.12.020">https://doi.org/10.1016/j.bpj.2023.12.020</a>
  chicago: Azadbakht, Ali, Billie Meadowcroft, Juraj Majek, Anđela Šarić, and Daniela
    J. Kraft. “Nonadditivity in Interactions between Three Membrane-Wrapped Colloidal
    Spheres.” <i>Biophysical Journal</i>. Elsevier, n.d. <a href="https://doi.org/10.1016/j.bpj.2023.12.020">https://doi.org/10.1016/j.bpj.2023.12.020</a>.
  ieee: A. Azadbakht, B. Meadowcroft, J. Majek, A. Šarić, and D. J. Kraft, “Nonadditivity
    in interactions between three membrane-wrapped colloidal spheres,” <i>Biophysical
    Journal</i>. Elsevier.
  ista: Azadbakht A, Meadowcroft B, Majek J, Šarić A, Kraft DJ. Nonadditivity in interactions
    between three membrane-wrapped colloidal spheres. Biophysical Journal.
  mla: Azadbakht, Ali, et al. “Nonadditivity in Interactions between Three Membrane-Wrapped
    Colloidal Spheres.” <i>Biophysical Journal</i>, Elsevier, doi:<a href="https://doi.org/10.1016/j.bpj.2023.12.020">10.1016/j.bpj.2023.12.020</a>.
  short: A. Azadbakht, B. Meadowcroft, J. Majek, A. Šarić, D.J. Kraft, Biophysical
    Journal (n.d.).
date_created: 2024-01-21T23:00:56Z
date_published: 2023-12-29T00:00:00Z
date_updated: 2024-01-23T09:26:35Z
day: '29'
ddc:
- '570'
department:
- _id: AnSa
doi: 10.1016/j.bpj.2023.12.020
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.bpj.2023.12.020
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: eba2549b-77a9-11ec-83b8-a81e493eae4e
  call_identifier: H2020
  grant_number: '802960'
  name: 'Non-Equilibrium Protein Assembly: from Building Blocks to Biological Machines'
publication: Biophysical Journal
publication_identifier:
  eissn:
  - 1542-0086
  issn:
  - 0006-3495
publication_status: inpress
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nonadditivity in interactions between three membrane-wrapped colloidal spheres
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '14847'
abstract:
- lang: eng
  text: Understanding the mechanisms of chaperones at the atomic level generally requires
    producing chaperone–client complexes in vitro. This task comes with significant
    challenges, because one needs to find conditions in which the client protein is
    presented to the chaperone in a state that binds and at the same time avoid the
    pitfalls of protein aggregation that are often inherent to such states. The strategy
    differs significantly for different client proteins and chaperones, but there
    are common underlying principles. Here, we discuss these principles and deduce
    the strategies that can be successfully applied for different chaperone–client
    complexes. We review successful biochemical strategies applied to making the client
    protein “binding competent” and illustrate the different strategies with examples
    of recent biophysical and biochemical studies.
alternative_title:
- New Developments in NMR
article_processing_charge: No
author:
- first_name: I.
  full_name: Sučec, I.
  last_name: Sučec
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
citation:
  ama: 'Sučec I, Schanda P. Preparing Chaperone–Client Protein Complexes for Biophysical
    and Structural Studies. In: Hiller S, Liu M, He L, eds. <i>Biophysics of Molecular
    Chaperones</i>. Vol 29. Royal Society of Chemistry; 2023:136-161. doi:<a href="https://doi.org/10.1039/bk9781839165986-00136">10.1039/bk9781839165986-00136</a>'
  apa: Sučec, I., &#38; Schanda, P. (2023). Preparing Chaperone–Client Protein Complexes
    for Biophysical and Structural Studies. In S. Hiller, M. Liu, &#38; L. He (Eds.),
    <i>Biophysics of Molecular Chaperones</i> (Vol. 29, pp. 136–161). Royal Society
    of Chemistry. <a href="https://doi.org/10.1039/bk9781839165986-00136">https://doi.org/10.1039/bk9781839165986-00136</a>
  chicago: Sučec, I., and Paul Schanda. “Preparing Chaperone–Client Protein Complexes
    for Biophysical and Structural Studies.” In <i>Biophysics of Molecular Chaperones</i>,
    edited by Sebastian Hiller, Maili Liu, and Lichun He, 29:136–61. Royal Society
    of Chemistry, 2023. <a href="https://doi.org/10.1039/bk9781839165986-00136">https://doi.org/10.1039/bk9781839165986-00136</a>.
  ieee: I. Sučec and P. Schanda, “Preparing Chaperone–Client Protein Complexes for
    Biophysical and Structural Studies,” in <i>Biophysics of Molecular Chaperones</i>,
    vol. 29, S. Hiller, M. Liu, and L. He, Eds. Royal Society of Chemistry, 2023,
    pp. 136–161.
  ista: 'Sučec I, Schanda P. 2023.Preparing Chaperone–Client Protein Complexes for
    Biophysical and Structural Studies. In: Biophysics of Molecular Chaperones. New
    Developments in NMR, vol. 29, 136–161.'
  mla: Sučec, I., and Paul Schanda. “Preparing Chaperone–Client Protein Complexes
    for Biophysical and Structural Studies.” <i>Biophysics of Molecular Chaperones</i>,
    edited by Sebastian Hiller et al., vol. 29, Royal Society of Chemistry, 2023,
    pp. 136–61, doi:<a href="https://doi.org/10.1039/bk9781839165986-00136">10.1039/bk9781839165986-00136</a>.
  short: I. Sučec, P. Schanda, in:, S. Hiller, M. Liu, L. He (Eds.), Biophysics of
    Molecular Chaperones, Royal Society of Chemistry, 2023, pp. 136–161.
date_created: 2024-01-22T08:04:57Z
date_published: 2023-11-01T00:00:00Z
date_updated: 2024-01-23T11:50:10Z
day: '01'
department:
- _id: PaSc
doi: 10.1039/bk9781839165986-00136
editor:
- first_name: Sebastian
  full_name: Hiller, Sebastian
  last_name: Hiller
- first_name: Maili
  full_name: Liu, Maili
  last_name: Liu
- first_name: Lichun
  full_name: He, Lichun
  last_name: He
intvolume: '        29'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.26434/chemrxiv-2023-rpn28
month: '11'
oa: 1
oa_version: Preprint
page: 136-161
publication: Biophysics of Molecular Chaperones
publication_identifier:
  eisbn:
  - '9781839165993'
  isbn:
  - '9781839162824'
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
status: public
title: Preparing Chaperone–Client Protein Complexes for Biophysical and Structural
  Studies
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 29
year: '2023'
...
---
_id: '14848'
abstract:
- lang: eng
  text: Regulating protein states is considered the core function of chaperones. However,
    despite their importance to all major cellular processes, the conformational changes
    that chaperones impart on polypeptide chains are difficult to study directly due
    to their heterogeneous, dynamic, and multi-step nature. Here, we review recent
    advances towards this aim using single-molecule manipulation methods, which are
    rapidly revealing new mechanisms of conformational control and helping to define
    a different perspective on the chaperone function.
alternative_title:
- New Developments in NMR
article_processing_charge: No
author:
- first_name: F.
  full_name: Wruck, F.
  last_name: Wruck
- first_name: Mario
  full_name: Avellaneda Sarrió, Mario
  id: DC4BA84C-56E6-11EA-AD5D-348C3DDC885E
  last_name: Avellaneda Sarrió
  orcid: 0000-0001-6406-524X
- first_name: M. M.
  full_name: Naqvi, M. M.
  last_name: Naqvi
- first_name: E. J.
  full_name: Koers, E. J.
  last_name: Koers
- first_name: K.
  full_name: Till, K.
  last_name: Till
- first_name: L.
  full_name: Gross, L.
  last_name: Gross
- first_name: F.
  full_name: Moayed, F.
  last_name: Moayed
- first_name: A.
  full_name: Roland, A.
  last_name: Roland
- first_name: L. W. H. J.
  full_name: Heling, L. W. H. J.
  last_name: Heling
- first_name: A.
  full_name: Mashaghi, A.
  last_name: Mashaghi
- first_name: S. J.
  full_name: Tans, S. J.
  last_name: Tans
citation:
  ama: 'Wruck F, Avellaneda Sarrió M, Naqvi MM, et al. Probing Single Chaperone Substrates.
    In: Hiller S, Liu M, He L, eds. <i>Biophysics of Molecular Chaperones</i>. Vol
    29. Royal Society of Chemistry; 2023:278-318. doi:<a href="https://doi.org/10.1039/bk9781839165986-00278">10.1039/bk9781839165986-00278</a>'
  apa: Wruck, F., Avellaneda Sarrió, M., Naqvi, M. M., Koers, E. J., Till, K., Gross,
    L., … Tans, S. J. (2023). Probing Single Chaperone Substrates. In S. Hiller, M.
    Liu, &#38; L. He (Eds.), <i>Biophysics of Molecular Chaperones</i> (Vol. 29, pp.
    278–318). Royal Society of Chemistry. <a href="https://doi.org/10.1039/bk9781839165986-00278">https://doi.org/10.1039/bk9781839165986-00278</a>
  chicago: Wruck, F., Mario Avellaneda Sarrió, M. M. Naqvi, E. J. Koers, K. Till,
    L. Gross, F. Moayed, et al. “Probing Single Chaperone Substrates.” In <i>Biophysics
    of Molecular Chaperones</i>, edited by Sebastian Hiller, Maili Liu, and Lichun
    He, 29:278–318. Royal Society of Chemistry, 2023. <a href="https://doi.org/10.1039/bk9781839165986-00278">https://doi.org/10.1039/bk9781839165986-00278</a>.
  ieee: F. Wruck <i>et al.</i>, “Probing Single Chaperone Substrates,” in <i>Biophysics
    of Molecular Chaperones</i>, vol. 29, S. Hiller, M. Liu, and L. He, Eds. Royal
    Society of Chemistry, 2023, pp. 278–318.
  ista: 'Wruck F, Avellaneda Sarrió M, Naqvi MM, Koers EJ, Till K, Gross L, Moayed
    F, Roland A, Heling LWHJ, Mashaghi A, Tans SJ. 2023.Probing Single Chaperone Substrates.
    In: Biophysics of Molecular Chaperones. New Developments in NMR, vol. 29, 278–318.'
  mla: Wruck, F., et al. “Probing Single Chaperone Substrates.” <i>Biophysics of Molecular
    Chaperones</i>, edited by Sebastian Hiller et al., vol. 29, Royal Society of Chemistry,
    2023, pp. 278–318, doi:<a href="https://doi.org/10.1039/bk9781839165986-00278">10.1039/bk9781839165986-00278</a>.
  short: F. Wruck, M. Avellaneda Sarrió, M.M. Naqvi, E.J. Koers, K. Till, L. Gross,
    F. Moayed, A. Roland, L.W.H.J. Heling, A. Mashaghi, S.J. Tans, in:, S. Hiller,
    M. Liu, L. He (Eds.), Biophysics of Molecular Chaperones, Royal Society of Chemistry,
    2023, pp. 278–318.
date_created: 2024-01-22T08:07:02Z
date_published: 2023-11-01T00:00:00Z
date_updated: 2024-01-23T12:01:53Z
day: '01'
department:
- _id: MiSi
doi: 10.1039/bk9781839165986-00278
editor:
- first_name: Sebastian
  full_name: Hiller, Sebastian
  last_name: Hiller
- first_name: Maili
  full_name: Liu, Maili
  last_name: Liu
- first_name: Lichun
  full_name: He, Lichun
  last_name: He
intvolume: '        29'
language:
- iso: eng
month: '11'
oa_version: None
page: 278-318
publication: Biophysics of Molecular Chaperones
publication_identifier:
  eisbn:
  - '9781839165993'
  isbn:
  - '9781839162824'
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
status: public
title: Probing Single Chaperone Substrates
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 29
year: '2023'
...
---
_id: '14849'
abstract:
- lang: eng
  text: We establish a precise three-term asymptotic expansion, with an optimal estimate
    of the error term, for the rightmost eigenvalue of an n×n random matrix with independent
    identically distributed complex entries as n tends to infinity. All terms in the
    expansion are universal.
acknowledgement: "The second and the fourth author were supported by the ERC Advanced
  Grant\r\n“RMTBeyond” No. 101020331. The third author was supported by Dr. Max Rössler,
  the\r\nWalter Haefner Foundation and the ETH Zürich Foundation."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Giorgio
  full_name: Cipolloni, Giorgio
  id: 42198EFA-F248-11E8-B48F-1D18A9856A87
  last_name: Cipolloni
  orcid: 0000-0002-4901-7992
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
- first_name: Yuanyuan
  full_name: Xu, Yuanyuan
  last_name: Xu
citation:
  ama: Cipolloni G, Erdös L, Schröder DJ, Xu Y. On the rightmost eigenvalue of non-Hermitian
    random matrices. <i>The Annals of Probability</i>. 2023;51(6):2192-2242. doi:<a
    href="https://doi.org/10.1214/23-aop1643">10.1214/23-aop1643</a>
  apa: Cipolloni, G., Erdös, L., Schröder, D. J., &#38; Xu, Y. (2023). On the rightmost
    eigenvalue of non-Hermitian random matrices. <i>The Annals of Probability</i>.
    Institute of Mathematical Statistics. <a href="https://doi.org/10.1214/23-aop1643">https://doi.org/10.1214/23-aop1643</a>
  chicago: Cipolloni, Giorgio, László Erdös, Dominik J Schröder, and Yuanyuan Xu.
    “On the Rightmost Eigenvalue of Non-Hermitian Random Matrices.” <i>The Annals
    of Probability</i>. Institute of Mathematical Statistics, 2023. <a href="https://doi.org/10.1214/23-aop1643">https://doi.org/10.1214/23-aop1643</a>.
  ieee: G. Cipolloni, L. Erdös, D. J. Schröder, and Y. Xu, “On the rightmost eigenvalue
    of non-Hermitian random matrices,” <i>The Annals of Probability</i>, vol. 51,
    no. 6. Institute of Mathematical Statistics, pp. 2192–2242, 2023.
  ista: Cipolloni G, Erdös L, Schröder DJ, Xu Y. 2023. On the rightmost eigenvalue
    of non-Hermitian random matrices. The Annals of Probability. 51(6), 2192–2242.
  mla: Cipolloni, Giorgio, et al. “On the Rightmost Eigenvalue of Non-Hermitian Random
    Matrices.” <i>The Annals of Probability</i>, vol. 51, no. 6, Institute of Mathematical
    Statistics, 2023, pp. 2192–242, doi:<a href="https://doi.org/10.1214/23-aop1643">10.1214/23-aop1643</a>.
  short: G. Cipolloni, L. Erdös, D.J. Schröder, Y. Xu, The Annals of Probability 51
    (2023) 2192–2242.
date_created: 2024-01-22T08:08:41Z
date_published: 2023-11-01T00:00:00Z
date_updated: 2024-01-23T10:56:30Z
day: '01'
department:
- _id: LaEr
doi: 10.1214/23-aop1643
ec_funded: 1
external_id:
  arxiv:
  - '2206.04448'
intvolume: '        51'
issue: '6'
keyword:
- Statistics
- Probability and Uncertainty
- Statistics and Probability
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2206.04448
month: '11'
oa: 1
oa_version: Preprint
page: 2192-2242
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
  call_identifier: H2020
  grant_number: '101020331'
  name: Random matrices beyond Wigner-Dyson-Mehta
publication: The Annals of Probability
publication_identifier:
  issn:
  - 0091-1798
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
status: public
title: On the rightmost eigenvalue of non-Hermitian random matrices
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 51
year: '2023'
...
---
_id: '14853'
abstract:
- lang: eng
  text: Organization – or departure from a random pattern – in tropical deep convection
    is heavily studied due to its immediate relevance to climate sensitivity and extremes.
    Low-latitude convection has motivated numerical model idealizations, where the
    Coriolis force is removed and boundary conditions are simplified spatially and
    temporally. One of the most stunning aspects of such idealized simulated cloud
    organization is the spontaneous clumping of convection that can occur without
    any predetermining external perturbation, such as inhomogeneous surface boundary
    conditions or large-scale waves. Whereas individual convective rain cells measure
    only few kilometers in horizontal diameter, the clusters they form can often span
    hundreds or even thousands of kilometers. Hence, organization may emerge from
    the very small scales but can show effects at the synoptic scale. We refer to
    such emergent organization as convective self-organization. Convective self-organization
    thus features characteristics of emergence, such as non-trivial system-scale pattern
    formation or hysteresis. We summarize observational evidence for large-scale organization
    and briefly recap classical idealized modeling studies that yield convective self-aggregation
    – emergent organization under strongly idealized boundary conditions. We then
    focus on developing research, where temporal variation, such as the diurnal cycle,
    or two-way interactive surface properties yield distinct organizational modes.
    Convectively generated cold pools and mesoscale convective systems, both ubiquitous
    in nature, are thereby found to potentially play key roles in promoting – rather
    than suppressing – sustained system-scale organization.
alternative_title:
- Geophysical Monograph Series
article_processing_charge: No
author:
- first_name: Jan O.
  full_name: Haerter, Jan O.
  last_name: Haerter
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
citation:
  ama: 'Haerter JO, Muller CJ. Mechanisms for the Self‐Organization of Tropical Deep
    Convection. In: Sullivan S, Hoose C, eds. <i>Clouds and Their Climatic Impacts</i>.
    Wiley; 2023:179-193. doi:<a href="https://doi.org/10.1002/9781119700357.ch8">10.1002/9781119700357.ch8</a>'
  apa: Haerter, J. O., &#38; Muller, C. J. (2023). Mechanisms for the Self‐Organization
    of Tropical Deep Convection. In S. Sullivan &#38; C. Hoose (Eds.), <i>Clouds and
    Their Climatic Impacts</i> (pp. 179–193). Wiley. <a href="https://doi.org/10.1002/9781119700357.ch8">https://doi.org/10.1002/9781119700357.ch8</a>
  chicago: Haerter, Jan O., and Caroline J Muller. “Mechanisms for the Self‐Organization
    of Tropical Deep Convection.” In <i>Clouds and Their Climatic Impacts</i>, edited
    by Sylvia Sullivan and Corinna Hoose, 179–93. Wiley, 2023. <a href="https://doi.org/10.1002/9781119700357.ch8">https://doi.org/10.1002/9781119700357.ch8</a>.
  ieee: J. O. Haerter and C. J. Muller, “Mechanisms for the Self‐Organization of Tropical
    Deep Convection,” in <i>Clouds and Their Climatic Impacts</i>, S. Sullivan and
    C. Hoose, Eds. Wiley, 2023, pp. 179–193.
  ista: 'Haerter JO, Muller CJ. 2023.Mechanisms for the Self‐Organization of Tropical
    Deep Convection. In: Clouds and Their Climatic Impacts. Geophysical Monograph
    Series, , 179–193.'
  mla: Haerter, Jan O., and Caroline J. Muller. “Mechanisms for the Self‐Organization
    of Tropical Deep Convection.” <i>Clouds and Their Climatic Impacts</i>, edited
    by Sylvia Sullivan and Corinna Hoose, Wiley, 2023, pp. 179–93, doi:<a href="https://doi.org/10.1002/9781119700357.ch8">10.1002/9781119700357.ch8</a>.
  short: J.O. Haerter, C.J. Muller, in:, S. Sullivan, C. Hoose (Eds.), Clouds and
    Their Climatic Impacts, Wiley, 2023, pp. 179–193.
date_created: 2024-01-22T08:23:16Z
date_published: 2023-12-15T00:00:00Z
date_updated: 2024-01-23T12:40:36Z
day: '15'
department:
- _id: CaMu
doi: 10.1002/9781119700357.ch8
editor:
- first_name: Sylvia
  full_name: Sullivan, Sylvia
  last_name: Sullivan
- first_name: Corinna
  full_name: Hoose, Corinna
  last_name: Hoose
language:
- iso: eng
month: '12'
oa_version: None
page: 179-193
publication: Clouds and Their Climatic Impacts
publication_identifier:
  eisbn:
  - '9781119700357'
  isbn:
  - '9781119700319'
  issn:
  - 2328-8779
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Mechanisms for the Self‐Organization of Tropical Deep Convection
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '14854'
abstract:
- lang: eng
  text: "\r\nAbstract\r\nWe study the spectrum of the Fröhlich Hamiltonian for the
    polaron at fixed total momentum. We prove the existence of excited eigenvalues
    between the ground state energy and the essential spectrum at strong coupling.
    In fact, our main result shows that the number of excited energy bands diverges
    in the strong coupling limit. To prove this we derive upper bounds for the min-max
    values of the corresponding fiber Hamiltonians and compare them with the bottom
    of the essential spectrum, a lower bound on which was recently obtained by Brooks
    and Seiringer (Comm. Math. Phys. 404:1 (2023), 287–337). The upper bounds are
    given in terms of the ground state energy band shifted by momentum-independent
    excitation energies determined by an effective Hamiltonian of Bogoliubov type."
article_processing_charge: No
article_type: original
author:
- first_name: David Johannes
  full_name: Mitrouskas, David Johannes
  id: cbddacee-2b11-11eb-a02e-a2e14d04e52d
  last_name: Mitrouskas
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Mitrouskas DJ, Seiringer R. Ubiquity of bound states for the strongly coupled
    polaron. <i>Pure and Applied Analysis</i>. 2023;5(4):973-1008. doi:<a href="https://doi.org/10.2140/paa.2023.5.973">10.2140/paa.2023.5.973</a>
  apa: Mitrouskas, D. J., &#38; Seiringer, R. (2023). Ubiquity of bound states for
    the strongly coupled polaron. <i>Pure and Applied Analysis</i>. Mathematical Sciences
    Publishers. <a href="https://doi.org/10.2140/paa.2023.5.973">https://doi.org/10.2140/paa.2023.5.973</a>
  chicago: Mitrouskas, David Johannes, and Robert Seiringer. “Ubiquity of Bound States
    for the Strongly Coupled Polaron.” <i>Pure and Applied Analysis</i>. Mathematical
    Sciences Publishers, 2023. <a href="https://doi.org/10.2140/paa.2023.5.973">https://doi.org/10.2140/paa.2023.5.973</a>.
  ieee: D. J. Mitrouskas and R. Seiringer, “Ubiquity of bound states for the strongly
    coupled polaron,” <i>Pure and Applied Analysis</i>, vol. 5, no. 4. Mathematical
    Sciences Publishers, pp. 973–1008, 2023.
  ista: Mitrouskas DJ, Seiringer R. 2023. Ubiquity of bound states for the strongly
    coupled polaron. Pure and Applied Analysis. 5(4), 973–1008.
  mla: Mitrouskas, David Johannes, and Robert Seiringer. “Ubiquity of Bound States
    for the Strongly Coupled Polaron.” <i>Pure and Applied Analysis</i>, vol. 5, no.
    4, Mathematical Sciences Publishers, 2023, pp. 973–1008, doi:<a href="https://doi.org/10.2140/paa.2023.5.973">10.2140/paa.2023.5.973</a>.
  short: D.J. Mitrouskas, R. Seiringer, Pure and Applied Analysis 5 (2023) 973–1008.
date_created: 2024-01-22T08:24:23Z
date_published: 2023-12-15T00:00:00Z
date_updated: 2024-01-23T12:55:12Z
day: '15'
department:
- _id: RoSe
doi: 10.2140/paa.2023.5.973
intvolume: '         5'
issue: '4'
keyword:
- General Medicine
language:
- iso: eng
month: '12'
oa_version: None
page: 973-1008
publication: Pure and Applied Analysis
publication_identifier:
  issn:
  - 2578-5885
  - 2578-5893
publication_status: published
publisher: Mathematical Sciences Publishers
quality_controlled: '1'
status: public
title: Ubiquity of bound states for the strongly coupled polaron
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2023'
...
---
_id: '14861'
abstract:
- lang: eng
  text: Cover Page
article_number: ' e202304138'
article_processing_charge: No
author:
- first_name: Lea Marie
  full_name: Becker, Lea Marie
  id: 36336939-eb97-11eb-a6c2-c83f1214ca79
  last_name: Becker
  orcid: 0000-0002-6401-5151
- first_name: Mélanie
  full_name: Berbon, Mélanie
  last_name: Berbon
- first_name: Alicia
  full_name: Vallet, Alicia
  last_name: Vallet
- first_name: Axelle
  full_name: Grelard, Axelle
  last_name: Grelard
- first_name: Estelle
  full_name: Morvan, Estelle
  last_name: Morvan
- first_name: Benjamin
  full_name: Bardiaux, Benjamin
  last_name: Bardiaux
- first_name: Roman
  full_name: Lichtenecker, Roman
  last_name: Lichtenecker
- first_name: Matthias
  full_name: Ernst, Matthias
  last_name: Ernst
- first_name: Antoine
  full_name: Loquet, Antoine
  last_name: Loquet
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
citation:
  ama: 'Becker LM, Berbon M, Vallet A, et al. <i>Cover Picture: The Rigid Core and
    Flexible Surface of Amyloid Fibrils Probed by Magic‐Angle‐Spinning NMR Spectroscopy
    of Aromatic Residues</i>. Vol 62. Wiley; 2023. doi:<a href="https://doi.org/10.1002/anie.202304138">10.1002/anie.202304138</a>'
  apa: 'Becker, L. M., Berbon, M., Vallet, A., Grelard, A., Morvan, E., Bardiaux,
    B., … Schanda, P. (2023). <i>Cover Picture: The rigid core and flexible surface
    of amyloid fibrils probed by Magic‐Angle‐Spinning NMR spectroscopy of aromatic
    residues</i>. <i>Angewandte Chemie International Edition</i> (Vol. 62). Wiley.
    <a href="https://doi.org/10.1002/anie.202304138">https://doi.org/10.1002/anie.202304138</a>'
  chicago: 'Becker, Lea Marie, Mélanie Berbon, Alicia Vallet, Axelle Grelard, Estelle
    Morvan, Benjamin Bardiaux, Roman Lichtenecker, Matthias Ernst, Antoine Loquet,
    and Paul Schanda. <i>Cover Picture: The Rigid Core and Flexible Surface of Amyloid
    Fibrils Probed by Magic‐Angle‐Spinning NMR Spectroscopy of Aromatic Residues</i>.
    <i>Angewandte Chemie International Edition</i>. Vol. 62. Wiley, 2023. <a href="https://doi.org/10.1002/anie.202304138">https://doi.org/10.1002/anie.202304138</a>.'
  ieee: 'L. M. Becker <i>et al.</i>, <i>Cover Picture: The rigid core and flexible
    surface of amyloid fibrils probed by Magic‐Angle‐Spinning NMR spectroscopy of
    aromatic residues</i>, vol. 62, no. 19. Wiley, 2023.'
  ista: 'Becker LM, Berbon M, Vallet A, Grelard A, Morvan E, Bardiaux B, Lichtenecker
    R, Ernst M, Loquet A, Schanda P. 2023. Cover Picture: The rigid core and flexible
    surface of amyloid fibrils probed by Magic‐Angle‐Spinning NMR spectroscopy of
    aromatic residues, Wiley,p.'
  mla: 'Becker, Lea Marie, et al. “Cover Picture: The Rigid Core and Flexible Surface
    of Amyloid Fibrils Probed by Magic‐Angle‐Spinning NMR Spectroscopy of Aromatic
    Residues.” <i>Angewandte Chemie International Edition</i>, vol. 62, no. 19, e202304138,
    Wiley, 2023, doi:<a href="https://doi.org/10.1002/anie.202304138">10.1002/anie.202304138</a>.'
  short: 'L.M. Becker, M. Berbon, A. Vallet, A. Grelard, E. Morvan, B. Bardiaux, R.
    Lichtenecker, M. Ernst, A. Loquet, P. Schanda, Cover Picture: The Rigid Core and
    Flexible Surface of Amyloid Fibrils Probed by Magic‐Angle‐Spinning NMR Spectroscopy
    of Aromatic Residues, Wiley, 2023.'
date_created: 2024-01-22T11:54:34Z
date_published: 2023-05-02T00:00:00Z
date_updated: 2024-01-23T08:48:14Z
day: '02'
department:
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doi: 10.1002/anie.202304138
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  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: 'Rella S, Kulikova Y, Minnegalieva A, Kondrashov F. Complex vaccination strategies
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    Health</i>. Vol 33. Oxford University Press; 2023. doi:<a href="https://doi.org/10.1093/eurpub/ckad160.597">10.1093/eurpub/ckad160.597</a>'
  apa: Rella, S., Kulikova, Y., Minnegalieva, A., &#38; Kondrashov, F. (2023). Complex
    vaccination strategies prevent the emergence of vaccine resistance. In <i>European
    Journal of Public Health</i> (Vol. 33). Oxford University Press. <a href="https://doi.org/10.1093/eurpub/ckad160.597">https://doi.org/10.1093/eurpub/ckad160.597</a>
  chicago: Rella, Simon, Y Kulikova, Aygul Minnegalieva, and Fyodor Kondrashov. “Complex
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    Journal of Public Health</i>, Vol. 33. Oxford University Press, 2023. <a href="https://doi.org/10.1093/eurpub/ckad160.597">https://doi.org/10.1093/eurpub/ckad160.597</a>.
  ieee: S. Rella, Y. Kulikova, A. Minnegalieva, and F. Kondrashov, “Complex vaccination
    strategies prevent the emergence of vaccine resistance,” in <i>European Journal
    of Public Health</i>, 2023, vol. 33, no. Supplement_2.
  ista: Rella S, Kulikova Y, Minnegalieva A, Kondrashov F. 2023. Complex vaccination
    strategies prevent the emergence of vaccine resistance. European Journal of Public
    Health. vol. 33, ckad160.597.
  mla: Rella, Simon, et al. “Complex Vaccination Strategies Prevent the Emergence
    of Vaccine Resistance.” <i>European Journal of Public Health</i>, vol. 33, no.
    Supplement_2, ckad160.597, Oxford University Press, 2023, doi:<a href="https://doi.org/10.1093/eurpub/ckad160.597">10.1093/eurpub/ckad160.597</a>.
  short: S. Rella, Y. Kulikova, A. Minnegalieva, F. Kondrashov, in:, European Journal
    of Public Health, Oxford University Press, 2023.
date_created: 2024-01-22T12:02:28Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2024-01-24T11:16:09Z
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article_number: EGU23-6157
article_processing_charge: No
author:
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- first_name: Agostino N.
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citation:
  ama: 'Polesello A, Muller CJ, Pasquero C, Meroni AN. Intensification mechanisms
    of tropical cyclones. In: <i>EGU General Assembly 2023</i>. European Geosciences
    Union; 2023. doi:<a href="https://doi.org/10.5194/egusphere-egu23-6157">10.5194/egusphere-egu23-6157</a>'
  apa: 'Polesello, A., Muller, C. J., Pasquero, C., &#38; Meroni, A. N. (2023). Intensification
    mechanisms of tropical cyclones. In <i>EGU General Assembly 2023</i>. Vienna,
    Austria &#38; Virtual: European Geosciences Union. <a href="https://doi.org/10.5194/egusphere-egu23-6157">https://doi.org/10.5194/egusphere-egu23-6157</a>'
  chicago: Polesello, Andrea, Caroline J Muller, Claudia Pasquero, and Agostino N.
    Meroni. “Intensification Mechanisms of Tropical Cyclones.” In <i>EGU General Assembly
    2023</i>. European Geosciences Union, 2023. <a href="https://doi.org/10.5194/egusphere-egu23-6157">https://doi.org/10.5194/egusphere-egu23-6157</a>.
  ieee: A. Polesello, C. J. Muller, C. Pasquero, and A. N. Meroni, “Intensification
    mechanisms of tropical cyclones,” in <i>EGU General Assembly 2023</i>, Vienna,
    Austria &#38; Virtual, 2023.
  ista: Polesello A, Muller CJ, Pasquero C, Meroni AN. 2023. Intensification mechanisms
    of tropical cyclones. EGU General Assembly 2023. EGU General Assembly, EGU23-6157.
  mla: Polesello, Andrea, et al. “Intensification Mechanisms of Tropical Cyclones.”
    <i>EGU General Assembly 2023</i>, EGU23-6157, European Geosciences Union, 2023,
    doi:<a href="https://doi.org/10.5194/egusphere-egu23-6157">10.5194/egusphere-egu23-6157</a>.
  short: A. Polesello, C.J. Muller, C. Pasquero, A.N. Meroni, in:, EGU General Assembly
    2023, European Geosciences Union, 2023.
conference:
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  location: Vienna, Austria & Virtual
  name: EGU General Assembly
  start_date: 2023-04-23
date_created: 2024-01-22T12:08:12Z
date_published: 2023-04-13T00:00:00Z
date_updated: 2024-01-24T11:25:07Z
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ddc:
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doi: 10.5194/egusphere-egu23-6157
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