[{"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","issue":"3","citation":{"ama":"He P, Zhang Y, Li H, et al. GhARF16-1 modulates leaf development by transcriptionally regulating the GhKNOX2-1 gene in cotton. <i>Plant Biotechnology Journal</i>. 2021;19(3):548-562. doi:<a href=\"https://doi.org/10.1111/pbi.13484\">10.1111/pbi.13484</a>","short":"P. He, Y. Zhang, H. Li, X. Fu, H. Shang, C. Zou, J. Friml, G. Xiao, Plant Biotechnology Journal 19 (2021) 548–562.","ieee":"P. He <i>et al.</i>, “GhARF16-1 modulates leaf development by transcriptionally regulating the GhKNOX2-1 gene in cotton,” <i>Plant Biotechnology Journal</i>, vol. 19, no. 3. Wiley, pp. 548–562, 2021.","chicago":"He, P, Yuzhou Zhang, H Li, X Fu, H Shang, C Zou, Jiří Friml, and G Xiao. “GhARF16-1 Modulates Leaf Development by Transcriptionally Regulating the GhKNOX2-1 Gene in Cotton.” <i>Plant Biotechnology Journal</i>. Wiley, 2021. <a href=\"https://doi.org/10.1111/pbi.13484\">https://doi.org/10.1111/pbi.13484</a>.","ista":"He P, Zhang Y, Li H, Fu X, Shang H, Zou C, Friml J, Xiao G. 2021. GhARF16-1 modulates leaf development by transcriptionally regulating the GhKNOX2-1 gene in cotton. Plant Biotechnology Journal. 19(3), 548–562.","mla":"He, P., et al. “GhARF16-1 Modulates Leaf Development by Transcriptionally Regulating the GhKNOX2-1 Gene in Cotton.” <i>Plant Biotechnology Journal</i>, vol. 19, no. 3, Wiley, 2021, pp. 548–62, doi:<a href=\"https://doi.org/10.1111/pbi.13484\">10.1111/pbi.13484</a>.","apa":"He, P., Zhang, Y., Li, H., Fu, X., Shang, H., Zou, C., … Xiao, G. (2021). GhARF16-1 modulates leaf development by transcriptionally regulating the GhKNOX2-1 gene in cotton. <i>Plant Biotechnology Journal</i>. Wiley. <a href=\"https://doi.org/10.1111/pbi.13484\">https://doi.org/10.1111/pbi.13484</a>"},"language":[{"iso":"eng"}],"oa":1,"file":[{"date_updated":"2021-04-12T12:29:07Z","creator":"dernst","file_size":15691871,"date_created":"2021-04-12T12:29:07Z","file_id":"9321","access_level":"open_access","content_type":"application/pdf","success":1,"file_name":"2021_PlantBiotechJournal_He.pdf","checksum":"63845be37fb962586e0c7773f2355970","relation":"main_file"}],"department":[{"_id":"JiFr"}],"month":"03","publication_status":"published","publication_identifier":{"issn":["1467-7644","1467-7652"]},"file_date_updated":"2021-04-12T12:29:07Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"intvolume":"        19","abstract":[{"text":"The leaf is a crucial organ evolved with remarkable morphological diversity to maximize plant photosynthesis. The leaf shape is a key trait that affects photosynthesis, flowering rates, disease resistance, and yield. Although many genes regulating leaf development have been identified in the past years, the precise regulatory architecture underlying the generation of diverse leaf shapes remains to be elucidated. We used cotton as a reference model to probe the genetic framework underlying divergent leaf forms. Comparative transcriptome analysis revealed that the GhARF16‐1 and GhKNOX2‐1 genes might be potential regulators of leaf shape. We functionally characterized the auxin‐responsive factor ARF16‐1 acting upstream of GhKNOX2‐1 to determine leaf morphology in cotton. The transcription of GhARF16‐1 was significantly higher in lobed‐leaved cotton than in smooth‐leaved cotton. Furthermore, the overexpression of GhARF16‐1 led to the upregulation of GhKNOX2‐1 and resulted in more and deeper serrations in cotton leaves, similar to the leaf shape of cotton plants overexpressing GhKNOX2‐1. We found that GhARF16‐1 specifically bound to the promoter of GhKNOX2‐1 to induce its expression. The heterologous expression of GhARF16‐1 and GhKNOX2‐1 in Arabidopsis led to lobed and curly leaves, and a genetic analysis revealed that GhKNOX2‐1 is epistatic to GhARF16‐1 in Arabidopsis, suggesting that the GhARF16‐1 and GhKNOX2‐1 interaction paradigm also functions to regulate leaf shape in Arabidopsis. To our knowledge, our results uncover a novel mechanism by which auxin, through the key component ARF16‐1 and its downstream‐activated gene KNOX2‐1, determines leaf morphology in eudicots.","lang":"eng"}],"has_accepted_license":"1","article_type":"original","date_created":"2020-10-05T12:44:33Z","volume":19,"title":"GhARF16-1 modulates leaf development by transcriptionally regulating the GhKNOX2-1 gene in cotton","oa_version":"Published Version","author":[{"last_name":"He","full_name":"He, P","first_name":"P"},{"full_name":"Zhang, Yuzhou","id":"3B6137F2-F248-11E8-B48F-1D18A9856A87","last_name":"Zhang","orcid":"0000-0003-2627-6956","first_name":"Yuzhou"},{"first_name":"H","last_name":"Li","full_name":"Li, H"},{"full_name":"Fu, X","last_name":"Fu","first_name":"X"},{"first_name":"H","last_name":"Shang","full_name":"Shang, H"},{"first_name":"C","full_name":"Zou, C","last_name":"Zou"},{"last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","first_name":"Jiří"},{"last_name":"Xiao","full_name":"Xiao, G","first_name":"G"}],"day":"01","scopus_import":"1","acknowledgement":"We are thankful to Professor Yuxian Zhu from Wuhan University for his extremely valuable remarks and helpful comments on the manuscript. This work was supported by the Shaanxi Natural Science Foundation (2019JQ‐062 and 2020JQ‐410), Shaanxi Youth Entrusted Talents Program (20190205), China Postdoctoral Science Foundation (2018M640947, 2020T130394), Shaanxi Postdoctoral Project (2018BSHYDZZ76), Natural Science Basic Research Plan in Shaanxi Province of China (2018JZ3006), Fundamental Research Funds for the Central Universities (GK201903064, GK201901004, GK202002005 and GK202001004), and State Key Laboratory of Cotton Biology Open Fund (CB2020A12).","date_published":"2021-03-01T00:00:00Z","pmid":1,"status":"public","publication":"Plant Biotechnology Journal","external_id":{"isi":["000577682300001"],"pmid":["32981232"]},"year":"2021","isi":1,"quality_controlled":"1","ddc":["580"],"page":"548-562","type":"journal_article","date_updated":"2023-08-04T11:03:10Z","_id":"8606","publisher":"Wiley","doi":"10.1111/pbi.13484","article_processing_charge":"No"},{"file_date_updated":"2021-02-04T09:53:16Z","publication_identifier":{"eissn":["1469-8137"],"issn":["0028-646x"]},"publication_status":"published","has_accepted_license":"1","abstract":[{"text":"To adapt to the diverse array of biotic and abiotic cues, plants have evolved sophisticated mechanisms to sense changes in environmental conditions and modulate their growth. Growth-promoting hormones and defence signalling fine tune plant development antagonistically. During host-pathogen interactions, this defence-growth trade-off is mediated by the counteractive effects of the defence hormone salicylic acid (SA) and the growth hormone auxin. Here we revealed an underlying mechanism of SA regulating auxin signalling by constraining the plasma membrane dynamics of PIN2 auxin efflux transporter in Arabidopsis thaliana roots. The lateral diffusion of PIN2 proteins is constrained by SA signalling, during which PIN2 proteins are condensed into hyperclusters depending on REM1.2-mediated nanodomain compartmentalisation. Furthermore, membrane nanodomain compartmentalisation by SA or Remorin (REM) assembly significantly suppressed clathrin-mediated endocytosis. Consequently, SA-induced heterogeneous surface condensation disrupted asymmetric auxin distribution and the resultant gravitropic response. Our results demonstrated a defence-growth trade-off mechanism by which SA signalling crosstalked with auxin transport by concentrating membrane-resident PIN2 into heterogeneous compartments.","lang":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"intvolume":"       229","volume":229,"date_created":"2020-10-05T12:45:36Z","article_type":"original","scopus_import":"1","day":"01","author":[{"first_name":"M","full_name":"Ke, M","last_name":"Ke"},{"last_name":"Ma","full_name":"Ma, Z","first_name":"Z"},{"last_name":"Wang","full_name":"Wang, D","first_name":"D"},{"last_name":"Sun","full_name":"Sun, Y","first_name":"Y"},{"full_name":"Wen, C","last_name":"Wen","first_name":"C"},{"first_name":"D","last_name":"Huang","full_name":"Huang, D"},{"first_name":"Z","full_name":"Chen, Z","last_name":"Chen"},{"full_name":"Yang, L","last_name":"Yang","first_name":"L"},{"first_name":"Shutang","orcid":"0000-0002-0471-8285","last_name":"Tan","full_name":"Tan, Shutang","id":"2DE75584-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Li, R","last_name":"Li","first_name":"R"},{"orcid":"0000-0002-8302-7596","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří","last_name":"Friml"},{"first_name":"Y","full_name":"Miao, Y","last_name":"Miao"},{"first_name":"X","last_name":"Chen","full_name":"Chen, X"}],"title":"Salicylic acid regulates PIN2 auxin transporter hyper-clustering and root gravitropic growth via Remorin-dependent lipid nanodomain organization in Arabidopsis thaliana","oa_version":"Published Version","citation":{"apa":"Ke, M., Ma, Z., Wang, D., Sun, Y., Wen, C., Huang, D., … Chen, X. (2021). Salicylic acid regulates PIN2 auxin transporter hyper-clustering and root gravitropic growth via Remorin-dependent lipid nanodomain organization in Arabidopsis thaliana. <i>New Phytologist</i>. Wiley. <a href=\"https://doi.org/10.1111/nph.16915\">https://doi.org/10.1111/nph.16915</a>","mla":"Ke, M., et al. “Salicylic Acid Regulates PIN2 Auxin Transporter Hyper-Clustering and Root Gravitropic Growth via Remorin-Dependent Lipid Nanodomain Organization in Arabidopsis Thaliana.” <i>New Phytologist</i>, vol. 229, no. 2, Wiley, 2021, pp. 963–78, doi:<a href=\"https://doi.org/10.1111/nph.16915\">10.1111/nph.16915</a>.","chicago":"Ke, M, Z Ma, D Wang, Y Sun, C Wen, D Huang, Z Chen, et al. “Salicylic Acid Regulates PIN2 Auxin Transporter Hyper-Clustering and Root Gravitropic Growth via Remorin-Dependent Lipid Nanodomain Organization in Arabidopsis Thaliana.” <i>New Phytologist</i>. Wiley, 2021. <a href=\"https://doi.org/10.1111/nph.16915\">https://doi.org/10.1111/nph.16915</a>.","ista":"Ke M, Ma Z, Wang D, Sun Y, Wen C, Huang D, Chen Z, Yang L, Tan S, Li R, Friml J, Miao Y, Chen X. 2021. Salicylic acid regulates PIN2 auxin transporter hyper-clustering and root gravitropic growth via Remorin-dependent lipid nanodomain organization in Arabidopsis thaliana. New Phytologist. 229(2), 963–978.","ieee":"M. Ke <i>et al.</i>, “Salicylic acid regulates PIN2 auxin transporter hyper-clustering and root gravitropic growth via Remorin-dependent lipid nanodomain organization in Arabidopsis thaliana,” <i>New Phytologist</i>, vol. 229, no. 2. Wiley, pp. 963–978, 2021.","short":"M. Ke, Z. Ma, D. Wang, Y. Sun, C. Wen, D. Huang, Z. Chen, L. Yang, S. Tan, R. Li, J. Friml, Y. Miao, X. Chen, New Phytologist 229 (2021) 963–978.","ama":"Ke M, Ma Z, Wang D, et al. Salicylic acid regulates PIN2 auxin transporter hyper-clustering and root gravitropic growth via Remorin-dependent lipid nanodomain organization in Arabidopsis thaliana. <i>New Phytologist</i>. 2021;229(2):963-978. doi:<a href=\"https://doi.org/10.1111/nph.16915\">10.1111/nph.16915</a>"},"issue":"2","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","oa":1,"language":[{"iso":"eng"}],"department":[{"_id":"JiFr"}],"file":[{"file_id":"9085","creator":"dernst","date_updated":"2021-02-04T09:53:16Z","file_size":3674502,"date_created":"2021-02-04T09:53:16Z","checksum":"d36b6a8c6fafab66264e0d27114dae63","relation":"main_file","content_type":"application/pdf","access_level":"open_access","file_name":"2021_NewPhytologist_Ke.pdf","success":1}],"month":"01","quality_controlled":"1","page":"963-978","ddc":["580"],"_id":"8608","date_updated":"2023-09-05T16:06:24Z","type":"journal_article","article_processing_charge":"No","doi":"10.1111/nph.16915","publisher":"Wiley","pmid":1,"acknowledgement":"This work was supported by the National Key Research andDevelopment Programme of China (2017YFA0506100), theNational Natural Science Foundation of China (31870170 and31701168), and the Fok Ying Tung Education Foundation(161027) to XC; NTU startup grant (M4081533) and NIM/01/2016 (NTU, Singapore) to YM. We thank Lei Shi andZhongquan Lin for microscopy assistance.","date_published":"2021-01-01T00:00:00Z","publication":"New Phytologist","status":"public","year":"2021","isi":1,"external_id":{"isi":["000573568000001"],"pmid":["32901934"]}},{"title":"Scale-invariant magnetic anisotropy in RuCl3 at high magnetic fields","oa_version":"Preprint","day":"01","scopus_import":"1","author":[{"last_name":"Modic","full_name":"Modic, Kimberly A","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","orcid":"0000-0001-9760-3147","first_name":"Kimberly A"},{"last_name":"McDonald","full_name":"McDonald, Ross D.","first_name":"Ross D."},{"full_name":"Ruff, J.P.C.","last_name":"Ruff","first_name":"J.P.C."},{"full_name":"Bachmann, Maja D.","last_name":"Bachmann","first_name":"Maja D."},{"first_name":"You","last_name":"Lai","full_name":"Lai, You"},{"first_name":"Johanna C.","full_name":"Palmstrom, Johanna C.","last_name":"Palmstrom"},{"first_name":"David","full_name":"Graf, David","last_name":"Graf"},{"last_name":"Chan","full_name":"Chan, Mun K.","first_name":"Mun K."},{"first_name":"F.F.","last_name":"Balakirev","full_name":"Balakirev, F.F."},{"first_name":"J.B.","last_name":"Betts","full_name":"Betts, J.B."},{"first_name":"G.S.","last_name":"Boebinger","full_name":"Boebinger, G.S."},{"full_name":"Schmidt, Marcus","last_name":"Schmidt","first_name":"Marcus"},{"last_name":"Lawler","full_name":"Lawler, Michael J.","first_name":"Michael J."},{"last_name":"Sokolov","full_name":"Sokolov, D.A.","first_name":"D.A."},{"first_name":"Philip J.W.","last_name":"Moll","full_name":"Moll, Philip J.W."},{"last_name":"Ramshaw","full_name":"Ramshaw, B.J.","first_name":"B.J."},{"first_name":"Arkady","full_name":"Shekhter, Arkady","last_name":"Shekhter"}],"date_created":"2020-10-18T22:01:37Z","article_type":"original","volume":17,"abstract":[{"text":"In RuCl3, inelastic neutron scattering and Raman spectroscopy reveal a continuum of non-spin-wave excitations that persists to high temperature, suggesting the presence of a spin liquid state on a honeycomb lattice. In the context of the Kitaev model, finite magnetic fields introduce interactions between the elementary excitations, and thus the effects of high magnetic fields that are comparable to the spin-exchange energy scale must be explored. Here, we report measurements of the magnetotropic coefficient—the thermodynamic coefficient associated with magnetic anisotropy—over a wide range of magnetic fields and temperatures. We find that magnetic field and temperature compete to determine the magnetic response in a way that is independent of the large intrinsic exchange-interaction energy. This emergent scale-invariant magnetic anisotropy provides evidence for a high degree of exchange frustration that favours the formation of a spin liquid state in RuCl3.","lang":"eng"}],"intvolume":"        17","publication_identifier":{"eissn":["17452481"],"issn":["17452473"]},"publication_status":"published","month":"02","arxiv":1,"department":[{"_id":"KiMo"}],"language":[{"iso":"eng"}],"oa":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"apa":"Modic, K. A., McDonald, R. D., Ruff, J. P. C., Bachmann, M. D., Lai, Y., Palmstrom, J. C., … Shekhter, A. (2021). Scale-invariant magnetic anisotropy in RuCl3 at high magnetic fields. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-020-1028-0\">https://doi.org/10.1038/s41567-020-1028-0</a>","mla":"Modic, Kimberly A., et al. “Scale-Invariant Magnetic Anisotropy in RuCl3 at High Magnetic Fields.” <i>Nature Physics</i>, vol. 17, Springer Nature, 2021, pp. 240–44, doi:<a href=\"https://doi.org/10.1038/s41567-020-1028-0\">10.1038/s41567-020-1028-0</a>.","ista":"Modic KA, McDonald RD, Ruff JPC, Bachmann MD, Lai Y, Palmstrom JC, Graf D, Chan MK, Balakirev FF, Betts JB, Boebinger GS, Schmidt M, Lawler MJ, Sokolov DA, Moll PJW, Ramshaw BJ, Shekhter A. 2021. Scale-invariant magnetic anisotropy in RuCl3 at high magnetic fields. Nature Physics. 17, 240–244.","chicago":"Modic, Kimberly A, Ross D. McDonald, J.P.C. Ruff, Maja D. Bachmann, You Lai, Johanna C. Palmstrom, David Graf, et al. “Scale-Invariant Magnetic Anisotropy in RuCl3 at High Magnetic Fields.” <i>Nature Physics</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1038/s41567-020-1028-0\">https://doi.org/10.1038/s41567-020-1028-0</a>.","ieee":"K. A. Modic <i>et al.</i>, “Scale-invariant magnetic anisotropy in RuCl3 at high magnetic fields,” <i>Nature Physics</i>, vol. 17. Springer Nature, pp. 240–244, 2021.","short":"K.A. Modic, R.D. McDonald, J.P.C. Ruff, M.D. Bachmann, Y. Lai, J.C. Palmstrom, D. Graf, M.K. Chan, F.F. Balakirev, J.B. Betts, G.S. Boebinger, M. Schmidt, M.J. Lawler, D.A. Sokolov, P.J.W. Moll, B.J. Ramshaw, A. Shekhter, Nature Physics 17 (2021) 240–244.","ama":"Modic KA, McDonald RD, Ruff JPC, et al. Scale-invariant magnetic anisotropy in RuCl3 at high magnetic fields. <i>Nature Physics</i>. 2021;17:240-244. doi:<a href=\"https://doi.org/10.1038/s41567-020-1028-0\">10.1038/s41567-020-1028-0</a>"},"publisher":"Springer Nature","article_processing_charge":"No","doi":"10.1038/s41567-020-1028-0","type":"journal_article","_id":"8673","date_updated":"2023-08-04T11:03:39Z","page":"240-244","quality_controlled":"1","main_file_link":[{"url":"https://arxiv.org/abs/2005.04228","open_access":"1"}],"external_id":{"isi":["000575344700003"],"arxiv":["2005.04228"]},"year":"2021","isi":1,"status":"public","publication":"Nature Physics","date_published":"2021-02-01T00:00:00Z","acknowledgement":"We thank M. Baenitz, A. Bangura, R. Coldea, G. Jackeli, S. Kivelson, S. Nagler, R. Valenti, C. Varma, S. Winter and J. Zaanen for insightful discussions. Samples were grown at the Max Planck Institute for Chemical Physics of Solids. The d.c.-field measurements were made at the National High Magnetic Field Laboratory (NHMFL) in Tallahassee, FL. The pulsed-field measurements were made in the Pulsed Field Facility of the NHMFL in Los Alamos, NM. All work at the NHMFL is supported through the National Science Foundation Cooperative Agreement nos. DMR-1157490 and DMR-1644779, the US Department of Energy and the State of Florida. R.D.M. acknowledges support from LANL LDRD-DR 20160085 Topology and Strong Correlations. M.C. acknowledges support from the Department of Energy ‘Science of 100 tesla’ BES programme for high-field experiments. X-ray data acquisition and analysis was performed at Cornell University. Research conducted at the Cornell High Energy Synchrotron Source (CHESS) is supported by the National Science Foundation under award no. DMR-1332208. B.J.R. acknowledges support from the Institute for Quantum Matter, an Energy Frontier Research Center funded by the US Department of Energy, Office of Science, Office of Basic Energy Sciences under award no. DE-SC0019331. Y.L. acknowledges support from the US Department of Energy through the LANL/LDRD programme and the G.T. Seaborg institute. J.C.P. is supported by a Gabilan Stanford Graduate Fellowship and an NSF Graduate Research Fellowship (grant no. DGE-114747). P.J.W.M. acknowledges funding from the Swiss National Science Foundation through project no. PP00P2-176789."},{"_id":"8689","date_updated":"2023-08-07T13:37:27Z","type":"journal_article","article_processing_charge":"No","doi":"10.1134/S1560354721010044","publisher":"Springer Nature","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2010.13243"}],"quality_controlled":"1","page":"61-88","ddc":["515"],"keyword":["Nearly{integrable Hamiltonian systems","perturbation theory","KAM Theory","Arnold's scheme","Kolmogorov's set","primary invariant tori","Lagrangian tori","measure estimates","small divisors","integrability on nowhere dense sets","Diophantine frequencies."],"isi":1,"year":"2021","external_id":{"arxiv":["2010.13243"],"isi":["000614454700004"]},"date_published":"2021-02-03T00:00:00Z","publication":"Regular and Chaotic Dynamics","status":"public","volume":26,"date_created":"2020-10-21T14:56:47Z","article_type":"original","scopus_import":"1","day":"03","author":[{"first_name":"Luigi","full_name":"Chierchia, Luigi","last_name":"Chierchia"},{"orcid":"0000-0003-2640-4049","first_name":"Edmond","id":"52DF3E68-AEFA-11EA-95A4-124A3DDC885E","full_name":"Koudjinan, Edmond","last_name":"Koudjinan"}],"oa_version":"Preprint","title":"V.I. Arnold's ''Global'' KAM theorem and geometric measure estimates","publication_identifier":{"issn":["1560-3547"]},"publication_status":"published","intvolume":"        26","abstract":[{"text":"This paper continues the discussion started in [CK19] concerning Arnold's legacy on classical KAM theory and (some of) its modern developments. We prove a detailed and explicit `global' Arnold's KAM Theorem, which yields, in particular, the Whitney conjugacy of a non{degenerate, real{analytic, nearly-integrable Hamiltonian system to an integrable system on a closed, nowhere dense, positive measure subset of the phase space. Detailed measure estimates on the Kolmogorov's set are provided in the case the phase space is: (A) a uniform neighbourhood of an arbitrary (bounded) set times the d-torus and (B) a domain with C2 boundary times the d-torus. All constants are explicitly given.","lang":"eng"}],"department":[{"_id":"VaKa"}],"month":"02","arxiv":1,"citation":{"ista":"Chierchia L, Koudjinan E. 2021. V.I. Arnold’s ‘“Global”’ KAM theorem and geometric measure estimates. Regular and Chaotic Dynamics. 26(1), 61–88.","chicago":"Chierchia, Luigi, and Edmond Koudjinan. “V.I. Arnold’s ‘“Global”’ KAM Theorem and Geometric Measure Estimates.” <i>Regular and Chaotic Dynamics</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1134/S1560354721010044\">https://doi.org/10.1134/S1560354721010044</a>.","mla":"Chierchia, Luigi, and Edmond Koudjinan. “V.I. Arnold’s ‘“Global”’ KAM Theorem and Geometric Measure Estimates.” <i>Regular and Chaotic Dynamics</i>, vol. 26, no. 1, Springer Nature, 2021, pp. 61–88, doi:<a href=\"https://doi.org/10.1134/S1560354721010044\">10.1134/S1560354721010044</a>.","apa":"Chierchia, L., &#38; Koudjinan, E. (2021). V.I. Arnold’s “‘Global’” KAM theorem and geometric measure estimates. <i>Regular and Chaotic Dynamics</i>. Springer Nature. <a href=\"https://doi.org/10.1134/S1560354721010044\">https://doi.org/10.1134/S1560354721010044</a>","ama":"Chierchia L, Koudjinan E. V.I. Arnold’s “‘Global’” KAM theorem and geometric measure estimates. <i>Regular and Chaotic Dynamics</i>. 2021;26(1):61-88. doi:<a href=\"https://doi.org/10.1134/S1560354721010044\">10.1134/S1560354721010044</a>","short":"L. Chierchia, E. Koudjinan, Regular and Chaotic Dynamics 26 (2021) 61–88.","ieee":"L. Chierchia and E. Koudjinan, “V.I. Arnold’s ‘“Global”’ KAM theorem and geometric measure estimates,” <i>Regular and Chaotic Dynamics</i>, vol. 26, no. 1. Springer Nature, pp. 61–88, 2021."},"issue":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa":1,"language":[{"iso":"eng"}]},{"quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/818559"}],"page":"208-223","type":"journal_article","_id":"8708","date_updated":"2023-08-04T11:04:11Z","publisher":"Wiley","article_processing_charge":"No","doi":"10.1111/jeb.13709","acknowledgement":"Data used in this work were partly produced through the genotyping and sequencing facilities of ISEM and LabEx CeMEB, an ANR ‘Investissements d'avenir’ program (ANR‐10‐LABX‐04‐01) This project benefited from the Montpellier Bioinformatics Biodiversity platform supported by the LabEx CeMEB. We thank Norah Saarman, Grant Pogson, Célia Gosset and Pierre‐Alexandre Gagnaire for providing samples. This work was funded by a Languedoc‐Roussillon ‘Chercheur(se)s d'Avenir’ grant (Connect7 project). P. Strelkov was supported by the Russian Science Foundation project 19‐74‐20024. This is article 2020‐240 of Institut des Sciences de l'Evolution de Montpellier.","date_published":"2021-01-01T00:00:00Z","pmid":1,"publication":"Journal of Evolutionary Biology","status":"public","related_material":{"record":[{"relation":"research_data","status":"public","id":"13073"}]},"external_id":{"isi":["000579599700001"],"pmid":["33045123"]},"year":"2021","isi":1,"publication_identifier":{"issn":["1010061X"],"eissn":["14209101"]},"publication_status":"published","abstract":[{"lang":"eng","text":"The Mytilus complex of marine mussel species forms a mosaic of hybrid zones, found across temperate regions of the globe. This allows us to study ‘replicated’ instances of secondary contact between closely related species. Previous work on this complex has shown that local introgression is both widespread and highly heterogeneous, and has identified SNPs that are outliers of differentiation between lineages. Here, we developed an ancestry‐informative panel of such SNPs. We then compared their frequencies in newly sampled populations, including samples from within the hybrid zones, and parental populations at different distances from the contact. Results show that close to the hybrid zones, some outlier loci are near to fixation for the heterospecific allele, suggesting enhanced local introgression, or the local sweep of a shared ancestral allele. Conversely, genomic cline analyses, treating local parental populations as the reference, reveal a globally high concordance among loci, albeit with a few signals of asymmetric introgression. Enhanced local introgression at specific loci is consistent with the early transfer of adaptive variants after contact, possibly including asymmetric bi‐stable variants (Dobzhansky‐Muller incompatibilities), or haplotypes loaded with fewer deleterious mutations. Having escaped one barrier, however, these variants can be trapped or delayed at the next barrier, confining the introgression locally. These results shed light on the decay of species barriers during phases of contact."}],"intvolume":"        34","date_created":"2020-10-25T23:01:20Z","article_type":"original","volume":34,"oa_version":"Preprint","title":"How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels","day":"01","scopus_import":"1","author":[{"first_name":"Alexis","full_name":"Simon, Alexis","last_name":"Simon"},{"last_name":"Fraisse","id":"32DF5794-F248-11E8-B48F-1D18A9856A87","full_name":"Fraisse, Christelle","orcid":"0000-0001-8441-5075","first_name":"Christelle"},{"full_name":"El Ayari, Tahani","last_name":"El Ayari","first_name":"Tahani"},{"first_name":"Cathy","full_name":"Liautard‐Haag, Cathy","last_name":"Liautard‐Haag"},{"last_name":"Strelkov","full_name":"Strelkov, Petr","first_name":"Petr"},{"first_name":"John J","full_name":"Welch, John J","last_name":"Welch"},{"full_name":"Bierne, Nicolas","last_name":"Bierne","first_name":"Nicolas"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"short":"A. Simon, C. Fraisse, T. El Ayari, C. Liautard‐Haag, P. Strelkov, J.J. Welch, N. Bierne, Journal of Evolutionary Biology 34 (2021) 208–223.","ieee":"A. Simon <i>et al.</i>, “How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels,” <i>Journal of Evolutionary Biology</i>, vol. 34, no. 1. Wiley, pp. 208–223, 2021.","ama":"Simon A, Fraisse C, El Ayari T, et al. How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels. <i>Journal of Evolutionary Biology</i>. 2021;34(1):208-223. doi:<a href=\"https://doi.org/10.1111/jeb.13709\">10.1111/jeb.13709</a>","mla":"Simon, Alexis, et al. “How Do Species Barriers Decay? Concordance and Local Introgression in Mosaic Hybrid Zones of Mussels.” <i>Journal of Evolutionary Biology</i>, vol. 34, no. 1, Wiley, 2021, pp. 208–23, doi:<a href=\"https://doi.org/10.1111/jeb.13709\">10.1111/jeb.13709</a>.","apa":"Simon, A., Fraisse, C., El Ayari, T., Liautard‐Haag, C., Strelkov, P., Welch, J. J., &#38; Bierne, N. (2021). How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels. <i>Journal of Evolutionary Biology</i>. Wiley. <a href=\"https://doi.org/10.1111/jeb.13709\">https://doi.org/10.1111/jeb.13709</a>","chicago":"Simon, Alexis, Christelle Fraisse, Tahani El Ayari, Cathy Liautard‐Haag, Petr Strelkov, John J Welch, and Nicolas Bierne. “How Do Species Barriers Decay? Concordance and Local Introgression in Mosaic Hybrid Zones of Mussels.” <i>Journal of Evolutionary Biology</i>. Wiley, 2021. <a href=\"https://doi.org/10.1111/jeb.13709\">https://doi.org/10.1111/jeb.13709</a>.","ista":"Simon A, Fraisse C, El Ayari T, Liautard‐Haag C, Strelkov P, Welch JJ, Bierne N. 2021. How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels. Journal of Evolutionary Biology. 34(1), 208–223."},"issue":"1","language":[{"iso":"eng"}],"oa":1,"department":[{"_id":"BeVi"},{"_id":"NiBa"}],"month":"01"},{"publication_status":"published","publication_identifier":{"issn":["10459219"]},"intvolume":"        32","abstract":[{"lang":"eng","text":"Deep learning at scale is dominated by communication time. Distributing samples across nodes usually yields the best performance, but poses scaling challenges due to global information dissemination and load imbalance across uneven sample lengths. State-of-the-art decentralized optimizers mitigate the problem, but require more iterations to achieve the same accuracy as their globally-communicating counterparts. We present Wait-Avoiding Group Model Averaging (WAGMA) SGD, a wait-avoiding stochastic optimizer that reduces global communication via subgroup weight exchange. The key insight is a combination of algorithmic changes to the averaging scheme and the use of a group allreduce operation. We prove the convergence of WAGMA-SGD, and empirically show that it retains convergence rates similar to Allreduce-SGD. For evaluation, we train ResNet-50 on ImageNet; Transformer for machine translation; and deep reinforcement learning for navigation at scale. Compared with state-of-the-art decentralized SGD variants, WAGMA-SGD significantly improves training throughput (e.g., 2.1× on 1,024 GPUs for reinforcement learning), and achieves the fastest time-to-solution (e.g., the highest score using the shortest training time for Transformer)."}],"volume":32,"date_created":"2020-11-05T15:25:43Z","article_type":"original","scopus_import":"1","day":"01","author":[{"last_name":"Li","full_name":"Li, Shigang","first_name":"Shigang"},{"full_name":"Tal Ben-Nun, Tal Ben-Nun","last_name":"Tal Ben-Nun","first_name":"Tal Ben-Nun"},{"first_name":"Giorgi","full_name":"Nadiradze, Giorgi","id":"3279A00C-F248-11E8-B48F-1D18A9856A87","last_name":"Nadiradze"},{"first_name":"Salvatore Di","last_name":"Girolamo","full_name":"Girolamo, Salvatore Di"},{"first_name":"Nikoli","full_name":"Dryden, Nikoli","last_name":"Dryden"},{"orcid":"0000-0003-3650-940X","first_name":"Dan-Adrian","full_name":"Alistarh, Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","last_name":"Alistarh"},{"full_name":"Hoefler, Torsten","last_name":"Hoefler","first_name":"Torsten"}],"oa_version":"Preprint","title":"Breaking (global) barriers in parallel stochastic optimization with wait-avoiding group averaging","citation":{"ama":"Li S, Tal Ben-Nun TB-N, Nadiradze G, et al. Breaking (global) barriers in parallel stochastic optimization with wait-avoiding group averaging. <i>IEEE Transactions on Parallel and Distributed Systems</i>. 2021;32(7). doi:<a href=\"https://doi.org/10.1109/TPDS.2020.3040606\">10.1109/TPDS.2020.3040606</a>","ieee":"S. Li <i>et al.</i>, “Breaking (global) barriers in parallel stochastic optimization with wait-avoiding group averaging,” <i>IEEE Transactions on Parallel and Distributed Systems</i>, vol. 32, no. 7. IEEE, 2021.","short":"S. Li, T.B.-N. Tal Ben-Nun, G. Nadiradze, S.D. Girolamo, N. Dryden, D.-A. Alistarh, T. Hoefler, IEEE Transactions on Parallel and Distributed Systems 32 (2021).","chicago":"Li, Shigang, Tal Ben-Nun Tal Ben-Nun, Giorgi Nadiradze, Salvatore Di Girolamo, Nikoli Dryden, Dan-Adrian Alistarh, and Torsten Hoefler. “Breaking (Global) Barriers in Parallel Stochastic Optimization with Wait-Avoiding Group Averaging.” <i>IEEE Transactions on Parallel and Distributed Systems</i>. IEEE, 2021. <a href=\"https://doi.org/10.1109/TPDS.2020.3040606\">https://doi.org/10.1109/TPDS.2020.3040606</a>.","ista":"Li S, Tal Ben-Nun TB-N, Nadiradze G, Girolamo SD, Dryden N, Alistarh D-A, Hoefler T. 2021. Breaking (global) barriers in parallel stochastic optimization with wait-avoiding group averaging. IEEE Transactions on Parallel and Distributed Systems. 32(7), 9271898.","apa":"Li, S., Tal Ben-Nun, T. B.-N., Nadiradze, G., Girolamo, S. D., Dryden, N., Alistarh, D.-A., &#38; Hoefler, T. (2021). Breaking (global) barriers in parallel stochastic optimization with wait-avoiding group averaging. <i>IEEE Transactions on Parallel and Distributed Systems</i>. IEEE. <a href=\"https://doi.org/10.1109/TPDS.2020.3040606\">https://doi.org/10.1109/TPDS.2020.3040606</a>","mla":"Li, Shigang, et al. “Breaking (Global) Barriers in Parallel Stochastic Optimization with Wait-Avoiding Group Averaging.” <i>IEEE Transactions on Parallel and Distributed Systems</i>, vol. 32, no. 7, 9271898, IEEE, 2021, doi:<a href=\"https://doi.org/10.1109/TPDS.2020.3040606\">10.1109/TPDS.2020.3040606</a>."},"issue":"7","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa":1,"language":[{"iso":"eng"}],"department":[{"_id":"DaAl"}],"article_number":"9271898","arxiv":1,"month":"07","main_file_link":[{"url":"https://arxiv.org/abs/2005.00124","open_access":"1"}],"quality_controlled":"1","_id":"8723","date_updated":"2023-08-04T11:08:52Z","type":"journal_article","article_processing_charge":"No","doi":"10.1109/TPDS.2020.3040606","publisher":"IEEE","ec_funded":1,"date_published":"2021-07-01T00:00:00Z","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Hori-\r\nzon 2020 programme under Grant DAPP, Grant 678880; EPi-GRAM-HS, Grant 801039; and ERC Starting Grant ScaleML, Grant 805223. The work of Tal Ben-Nun is supported by the Swiss National Science Foundation (Ambizione Project No. 185778). The work of Nikoli Dryden is supported by the ETH Postdoctoral Fellowship. The authors would like to thank the Swiss National Supercomputing Center for providing the computing resources and technical support.","status":"public","publication":"IEEE Transactions on Parallel and Distributed Systems","project":[{"_id":"268A44D6-B435-11E9-9278-68D0E5697425","grant_number":"805223","name":"Elastic Coordination for Scalable Machine Learning","call_identifier":"H2020"}],"isi":1,"year":"2021","external_id":{"arxiv":["2005.00124"],"isi":["000621405200019"]}},{"type":"journal_article","_id":"8730","date_updated":"2023-10-18T06:45:30Z","publisher":"SAGE Publications","article_processing_charge":"No","doi":"10.1177/0271678X20965500","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8221757/"}],"page":"1634-1646","external_id":{"pmid":["33081568"],"isi":["000664214100012"]},"year":"2021","isi":1,"date_published":"2021-07-01T00:00:00Z","pmid":1,"publication":"Journal of Cerebral Blood Flow and Metabolism","status":"public","date_created":"2020-11-06T08:39:01Z","article_type":"original","volume":41,"title":"Complete inhibition of ABCB1 and ABCG2 at the blood-brain barrier by co-infusion of erlotinib and tariquidar to improve brain delivery of the model ABCB1/ABCG2 substrate [11C]erlotinib","oa_version":"Published Version","day":"01","scopus_import":"1","author":[{"last_name":"Tournier","full_name":"Tournier, N","first_name":"N"},{"first_name":"S","full_name":"Goutal, S","last_name":"Goutal"},{"last_name":"Mairinger","full_name":"Mairinger, S","first_name":"S"},{"first_name":"IH","full_name":"Lozano, IH","last_name":"Lozano"},{"full_name":"Filip, T","last_name":"Filip","first_name":"T"},{"first_name":"M","full_name":"Sauberer, M","last_name":"Sauberer"},{"first_name":"F","last_name":"Caillé","full_name":"Caillé, F"},{"last_name":"Breuil","full_name":"Breuil, L","first_name":"L"},{"last_name":"Stanek","full_name":"Stanek, J","first_name":"J"},{"first_name":"AF","full_name":"Freeman, AF","last_name":"Freeman"},{"last_name":"Novarino","full_name":"Novarino, Gaia","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7673-7178","first_name":"Gaia"},{"first_name":"C","last_name":"Truillet","full_name":"Truillet, C"},{"full_name":"Wanek, T","last_name":"Wanek","first_name":"T"},{"last_name":"Langer","full_name":"Langer, O","first_name":"O"}],"publication_status":"published","publication_identifier":{"issn":["0271-678x"],"eissn":["1559-7016"]},"abstract":[{"lang":"eng","text":"P-glycoprotein (ABCB1) and breast cancer resistance protein (ABCG2) restrict at the blood–brain barrier (BBB) the brain distribution of the majority of currently known molecularly targeted anticancer drugs. To improve brain delivery of dual ABCB1/ABCG2 substrates, both ABCB1 and ABCG2 need to be inhibited simultaneously at the BBB. We examined the feasibility of simultaneous ABCB1/ABCG2 inhibition with i.v. co-infusion of erlotinib and tariquidar by studying brain distribution of the model ABCB1/ABCG2 substrate [11C]erlotinib in mice and rhesus macaques with PET. Tolerability of the erlotinib/tariquidar combination was assessed in human embryonic stem cell-derived cerebral organoids. In mice and macaques, baseline brain distribution of [11C]erlotinib was low (brain distribution volume, VT,brain < 0.3 mL/cm3). Co-infusion of erlotinib and tariquidar increased VT,brain in mice by 3.0-fold and in macaques by 3.4- to 5.0-fold, while infusion of erlotinib alone or tariquidar alone led to less pronounced VT,brain increases in both species. Treatment of cerebral organoids with erlotinib/tariquidar led to an induction of Caspase-3-dependent apoptosis. Co-infusion of erlotinib/tariquidar may potentially allow for complete ABCB1/ABCG2 inhibition at the BBB, while simultaneously achieving brain-targeted EGFR inhibition. Our protocol may be applicable to enhance brain delivery of molecularly targeted anticancer drugs for a more effective treatment of brain tumors."}],"intvolume":"        41","department":[{"_id":"GaNo"}],"month":"07","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ama":"Tournier N, Goutal S, Mairinger S, et al. Complete inhibition of ABCB1 and ABCG2 at the blood-brain barrier by co-infusion of erlotinib and tariquidar to improve brain delivery of the model ABCB1/ABCG2 substrate [11C]erlotinib. <i>Journal of Cerebral Blood Flow and Metabolism</i>. 2021;41(7):1634-1646. doi:<a href=\"https://doi.org/10.1177/0271678X20965500\">10.1177/0271678X20965500</a>","ieee":"N. Tournier <i>et al.</i>, “Complete inhibition of ABCB1 and ABCG2 at the blood-brain barrier by co-infusion of erlotinib and tariquidar to improve brain delivery of the model ABCB1/ABCG2 substrate [11C]erlotinib,” <i>Journal of Cerebral Blood Flow and Metabolism</i>, vol. 41, no. 7. SAGE Publications, pp. 1634–1646, 2021.","short":"N. Tournier, S. Goutal, S. Mairinger, I. Lozano, T. Filip, M. Sauberer, F. Caillé, L. Breuil, J. Stanek, A. Freeman, G. Novarino, C. Truillet, T. Wanek, O. Langer, Journal of Cerebral Blood Flow and Metabolism 41 (2021) 1634–1646.","ista":"Tournier N, Goutal S, Mairinger S, Lozano I, Filip T, Sauberer M, Caillé F, Breuil L, Stanek J, Freeman A, Novarino G, Truillet C, Wanek T, Langer O. 2021. Complete inhibition of ABCB1 and ABCG2 at the blood-brain barrier by co-infusion of erlotinib and tariquidar to improve brain delivery of the model ABCB1/ABCG2 substrate [11C]erlotinib. Journal of Cerebral Blood Flow and Metabolism. 41(7), 1634–1646.","chicago":"Tournier, N, S Goutal, S Mairinger, IH Lozano, T Filip, M Sauberer, F Caillé, et al. “Complete Inhibition of ABCB1 and ABCG2 at the Blood-Brain Barrier by Co-Infusion of Erlotinib and Tariquidar to Improve Brain Delivery of the Model ABCB1/ABCG2 Substrate [11C]Erlotinib.” <i>Journal of Cerebral Blood Flow and Metabolism</i>. SAGE Publications, 2021. <a href=\"https://doi.org/10.1177/0271678X20965500\">https://doi.org/10.1177/0271678X20965500</a>.","apa":"Tournier, N., Goutal, S., Mairinger, S., Lozano, I., Filip, T., Sauberer, M., … Langer, O. (2021). Complete inhibition of ABCB1 and ABCG2 at the blood-brain barrier by co-infusion of erlotinib and tariquidar to improve brain delivery of the model ABCB1/ABCG2 substrate [11C]erlotinib. <i>Journal of Cerebral Blood Flow and Metabolism</i>. SAGE Publications. <a href=\"https://doi.org/10.1177/0271678X20965500\">https://doi.org/10.1177/0271678X20965500</a>","mla":"Tournier, N., et al. “Complete Inhibition of ABCB1 and ABCG2 at the Blood-Brain Barrier by Co-Infusion of Erlotinib and Tariquidar to Improve Brain Delivery of the Model ABCB1/ABCG2 Substrate [11C]Erlotinib.” <i>Journal of Cerebral Blood Flow and Metabolism</i>, vol. 41, no. 7, SAGE Publications, 2021, pp. 1634–46, doi:<a href=\"https://doi.org/10.1177/0271678X20965500\">10.1177/0271678X20965500</a>."},"issue":"7","language":[{"iso":"eng"}],"oa":1},{"publication_status":"published","publication_identifier":{"eissn":["1435-5337"],"issn":["0933-7741"]},"abstract":[{"lang":"eng","text":"We develop a version of Ekedahl’s geometric sieve for integral quadratic forms of rank at least five. As one ranges over the zeros of such quadratic forms, we use the sieve to compute the density of coprime values of polynomials, and furthermore, to address a question about local solubility in families of varieties parameterised by the zeros."}],"intvolume":"        33","article_type":"original","date_created":"2020-11-08T23:01:25Z","volume":33,"title":"The geometric sieve for quadrics","oa_version":"Preprint","author":[{"id":"35827D50-F248-11E8-B48F-1D18A9856A87","full_name":"Browning, Timothy D","last_name":"Browning","first_name":"Timothy D","orcid":"0000-0002-8314-0177"},{"last_name":"Heath-Brown","full_name":"Heath-Brown, Roger","first_name":"Roger"}],"scopus_import":"1","day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"1","citation":{"short":"T.D. Browning, R. Heath-Brown, Forum Mathematicum 33 (2021) 147–165.","ieee":"T. D. Browning and R. Heath-Brown, “The geometric sieve for quadrics,” <i>Forum Mathematicum</i>, vol. 33, no. 1. De Gruyter, pp. 147–165, 2021.","ama":"Browning TD, Heath-Brown R. The geometric sieve for quadrics. <i>Forum Mathematicum</i>. 2021;33(1):147-165. doi:<a href=\"https://doi.org/10.1515/forum-2020-0074\">10.1515/forum-2020-0074</a>","mla":"Browning, Timothy D., and Roger Heath-Brown. “The Geometric Sieve for Quadrics.” <i>Forum Mathematicum</i>, vol. 33, no. 1, De Gruyter, 2021, pp. 147–65, doi:<a href=\"https://doi.org/10.1515/forum-2020-0074\">10.1515/forum-2020-0074</a>.","apa":"Browning, T. D., &#38; Heath-Brown, R. (2021). The geometric sieve for quadrics. <i>Forum Mathematicum</i>. De Gruyter. <a href=\"https://doi.org/10.1515/forum-2020-0074\">https://doi.org/10.1515/forum-2020-0074</a>","chicago":"Browning, Timothy D, and Roger Heath-Brown. “The Geometric Sieve for Quadrics.” <i>Forum Mathematicum</i>. De Gruyter, 2021. <a href=\"https://doi.org/10.1515/forum-2020-0074\">https://doi.org/10.1515/forum-2020-0074</a>.","ista":"Browning TD, Heath-Brown R. 2021. The geometric sieve for quadrics. Forum Mathematicum. 33(1), 147–165."},"language":[{"iso":"eng"}],"oa":1,"department":[{"_id":"TiBr"}],"arxiv":1,"month":"01","quality_controlled":"1","main_file_link":[{"url":"https://arxiv.org/abs/2003.09593","open_access":"1"}],"page":"147-165","type":"journal_article","date_updated":"2023-10-17T07:39:01Z","_id":"8742","publisher":"De Gruyter","doi":"10.1515/forum-2020-0074","article_processing_charge":"No","date_published":"2021-01-01T00:00:00Z","project":[{"grant_number":"P32428","name":"New frontiers of the Manin conjecture","call_identifier":"FWF","_id":"26AEDAB2-B435-11E9-9278-68D0E5697425"}],"publication":"Forum Mathematicum","status":"public","external_id":{"isi":["000604750900008"],"arxiv":["2003.09593"]},"year":"2021","isi":1},{"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","issue":"2","citation":{"ama":"Salces-Castellano A, Stankowski S, Arribas P, et al. Long-term cloud forest response to climate warming revealed by insect speciation history. <i>Evolution</i>. 2021;75(2):231-244. doi:<a href=\"https://doi.org/10.1111/evo.14111\">10.1111/evo.14111</a>","short":"A. Salces-Castellano, S. Stankowski, P. Arribas, J. Patino, D.N. Karger, R. Butlin, B.C. Emerson, Evolution 75 (2021) 231–244.","ieee":"A. Salces-Castellano <i>et al.</i>, “Long-term cloud forest response to climate warming revealed by insect speciation history,” <i>Evolution</i>, vol. 75, no. 2. Wiley, pp. 231–244, 2021.","chicago":"Salces-Castellano, Antonia, Sean Stankowski, Paula Arribas, Jairo Patino, Dirk N.  Karger, Roger Butlin, and Brent C. Emerson. “Long-Term Cloud Forest Response to Climate Warming Revealed by Insect Speciation History.” <i>Evolution</i>. Wiley, 2021. <a href=\"https://doi.org/10.1111/evo.14111\">https://doi.org/10.1111/evo.14111</a>.","ista":"Salces-Castellano A, Stankowski S, Arribas P, Patino J, Karger DN, Butlin R, Emerson BC. 2021. Long-term cloud forest response to climate warming revealed by insect speciation history. Evolution. 75(2), 231–244.","mla":"Salces-Castellano, Antonia, et al. “Long-Term Cloud Forest Response to Climate Warming Revealed by Insect Speciation History.” <i>Evolution</i>, vol. 75, no. 2, Wiley, 2021, pp. 231–44, doi:<a href=\"https://doi.org/10.1111/evo.14111\">10.1111/evo.14111</a>.","apa":"Salces-Castellano, A., Stankowski, S., Arribas, P., Patino, J., Karger, D. N., Butlin, R., &#38; Emerson, B. C. (2021). Long-term cloud forest response to climate warming revealed by insect speciation history. <i>Evolution</i>. Wiley. <a href=\"https://doi.org/10.1111/evo.14111\">https://doi.org/10.1111/evo.14111</a>"},"language":[{"iso":"eng"}],"oa":1,"department":[{"_id":"NiBa"}],"month":"02","publication_identifier":{"eissn":["1558-5646"],"issn":["0014-3820"]},"publication_status":"published","abstract":[{"lang":"eng","text":"Montane cloud forests are areas of high endemism, and are one of the more vulnerable terrestrial ecosystems to climate change. Thus, understanding how they both contribute to the generation of biodiversity, and will respond to ongoing climate change, are important and related challenges. The widely accepted model for montane cloud forest dynamics involves upslope forcing of their range limits with global climate warming. However, limited climate data provides some support for an alternative model, where range limits are forced downslope with climate warming. Testing between these two models is challenging, due to the inherent limitations of climate and pollen records. We overcome this with an alternative source of historical information, testing between competing model predictions using genomic data and demographic analyses for a species of beetle tightly associated to an oceanic island cloud forest. Results unequivocally support the alternative model: populations that were isolated at higher elevation peaks during the Last Glacial Maximum are now in contact and hybridizing at lower elevations. Our results suggest that genomic data are a rich source of information to further understand how montane cloud forest biodiversity originates, and how it is likely to be impacted by ongoing climate change."}],"intvolume":"        75","article_type":"original","date_created":"2020-11-08T23:01:26Z","volume":75,"title":"Long-term cloud forest response to climate warming revealed by insect speciation history","oa_version":"Submitted Version","author":[{"last_name":"Salces-Castellano","full_name":"Salces-Castellano, Antonia","first_name":"Antonia"},{"first_name":"Sean","id":"43161670-5719-11EA-8025-FABC3DDC885E","full_name":"Stankowski, Sean","last_name":"Stankowski"},{"first_name":"Paula","full_name":"Arribas, Paula","last_name":"Arribas"},{"first_name":"Jairo","full_name":"Patino, Jairo","last_name":"Patino"},{"full_name":"Karger, Dirk N. ","last_name":"Karger","first_name":"Dirk N. "},{"last_name":"Butlin","full_name":"Butlin, Roger","first_name":"Roger"},{"first_name":"Brent C.","last_name":"Emerson","full_name":"Emerson, Brent C."}],"scopus_import":"1","day":"01","acknowledgement":"This work was financed by the Spanish Agencia Estatal de Investigación (CGL2017‐85718‐P), awarded to BCE, and co‐financed by FEDER. It was also supported by the Spanish Ministerio de Ciencia, Innovación y Universidades (EQC2018‐004418‐P), awarded to BCE. AS‐C was funded by the Spanish Ministerio de Ciencia, Innovación y Universidades through an FPU PhD fellowship (FPU014/02948). The authors thank Instituto Tecnológico y de Energías Renovables (ITER), S.A for providing access to the Teide High‐Performance Computing facility (Teide‐HPC). Fieldwork was supported by collecting permit AFF 107/17 (sigma number 2017‐00572) kindly provided by the Cabildo of Tenerife. The authors wish to thank the following for field work and sample sorting and identification: A. J. Pérez‐Delgado, H. López, and C. Andújar. We also thank V. García‐Olivares for assistance with laboratory and bioinformatic work.","date_published":"2021-02-01T00:00:00Z","pmid":1,"publication":"Evolution","status":"public","external_id":{"pmid":["33078844"],"isi":["000583190600001"]},"related_material":{"link":[{"url":"https://doi.org/10.1111/evo.14225","relation":"erratum"}]},"isi":1,"year":"2021","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"http://hdl.handle.net/10261/223937"}],"page":"231-244","type":"journal_article","date_updated":"2023-08-04T11:09:49Z","_id":"8743","publisher":"Wiley","doi":"10.1111/evo.14111","article_processing_charge":"No"},{"has_accepted_license":"1","intvolume":"        22","abstract":[{"lang":"eng","text":"Traditional scientific conferences and seminar events have been hugely disrupted by the COVID-19 pandemic, paving the way for virtual forms of scientific communication to take hold and be put to the test."}],"file_date_updated":"2021-02-04T10:34:22Z","publication_status":"published","publication_identifier":{"eissn":["14710048"],"issn":["1471003X"]},"scopus_import":"1","day":"01","author":[{"full_name":"Bozelos, Panagiotis","id":"52e9c652-2982-11eb-81d4-b43d94c63700","last_name":"Bozelos","first_name":"Panagiotis"},{"orcid":"0000-0003-3295-6181","first_name":"Tim P","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","full_name":"Vogels, Tim P","last_name":"Vogels"}],"title":"Talking science, online","oa_version":"Published Version","volume":22,"date_created":"2020-11-15T23:01:18Z","article_type":"letter_note","oa":1,"language":[{"iso":"eng"}],"citation":{"ieee":"P. Bozelos and T. P. Vogels, “Talking science, online,” <i>Nature Reviews Neuroscience</i>, vol. 22, no. 1. Springer Nature, pp. 1–2, 2021.","short":"P. Bozelos, T.P. Vogels, Nature Reviews Neuroscience 22 (2021) 1–2.","ama":"Bozelos P, Vogels TP. Talking science, online. <i>Nature Reviews Neuroscience</i>. 2021;22(1):1-2. doi:<a href=\"https://doi.org/10.1038/s41583-020-00408-6\">10.1038/s41583-020-00408-6</a>","apa":"Bozelos, P., &#38; Vogels, T. P. (2021). Talking science, online. <i>Nature Reviews Neuroscience</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41583-020-00408-6\">https://doi.org/10.1038/s41583-020-00408-6</a>","mla":"Bozelos, Panagiotis, and Tim P. Vogels. “Talking Science, Online.” <i>Nature Reviews Neuroscience</i>, vol. 22, no. 1, Springer Nature, 2021, pp. 1–2, doi:<a href=\"https://doi.org/10.1038/s41583-020-00408-6\">10.1038/s41583-020-00408-6</a>.","ista":"Bozelos P, Vogels TP. 2021. Talking science, online. 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Springer Nature, 2021. <a href=\"https://doi.org/10.1038/s41583-020-00408-6\">https://doi.org/10.1038/s41583-020-00408-6</a>."},"issue":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"01","department":[{"_id":"TiVo"}],"file":[{"relation":"main_file","checksum":"7985d7dff94c086e35b94a911d78d9ad","success":1,"file_name":"2021_NatureNeuroScience_Bozelos.pdf","access_level":"open_access","content_type":"application/pdf","file_id":"9088","file_size":683634,"date_created":"2021-02-04T10:34:22Z","creator":"dernst","date_updated":"2021-02-04T10:34:22Z"}],"page":"1-2","ddc":["570"],"quality_controlled":"1","article_processing_charge":"No","doi":"10.1038/s41583-020-00408-6","publisher":"Springer Nature","_id":"8757","date_updated":"2023-08-04T11:10:20Z","type":"journal_article","status":"public","publication":"Nature Reviews Neuroscience","pmid":1,"date_published":"2021-01-01T00:00:00Z","year":"2021","isi":1,"external_id":{"pmid":["33173190"],"isi":["000588256300001"]}},{"oa":1,"language":[{"iso":"eng"}],"citation":{"short":"A. Brown, A. Romanov, Proceedings of the American Mathematical Society 149 (2021) 37–52.","ieee":"A. Brown and A. Romanov, “Contravariant forms on Whittaker modules,” <i>Proceedings of the American Mathematical Society</i>, vol. 149, no. 1. American Mathematical Society, pp. 37–52, 2021.","ama":"Brown A, Romanov A. Contravariant forms on Whittaker modules. <i>Proceedings of the American Mathematical Society</i>. 2021;149(1):37-52. doi:<a href=\"https://doi.org/10.1090/proc/15205\">10.1090/proc/15205</a>","mla":"Brown, Adam, and Anna Romanov. “Contravariant Forms on Whittaker Modules.” <i>Proceedings of the American Mathematical Society</i>, vol. 149, no. 1, American Mathematical Society, 2021, pp. 37–52, doi:<a href=\"https://doi.org/10.1090/proc/15205\">10.1090/proc/15205</a>.","apa":"Brown, A., &#38; Romanov, A. (2021). Contravariant forms on Whittaker modules. <i>Proceedings of the American Mathematical Society</i>. American Mathematical Society. <a href=\"https://doi.org/10.1090/proc/15205\">https://doi.org/10.1090/proc/15205</a>","ista":"Brown A, Romanov A. 2021. Contravariant forms on Whittaker modules. Proceedings of the American Mathematical Society. 149(1), 37–52.","chicago":"Brown, Adam, and Anna Romanov. “Contravariant Forms on Whittaker Modules.” <i>Proceedings of the American Mathematical Society</i>. American Mathematical Society, 2021. <a href=\"https://doi.org/10.1090/proc/15205\">https://doi.org/10.1090/proc/15205</a>."},"issue":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"01","arxiv":1,"department":[{"_id":"HeEd"}],"abstract":[{"lang":"eng","text":"Let g be a complex semisimple Lie algebra. We give a classification of contravariant forms on the nondegenerate Whittaker g-modules Y(χ,η) introduced by Kostant. We prove that the set of all contravariant forms on Y(χ,η) forms a vector space whose dimension is given by the cardinality of the Weyl group of g. We also describe a procedure for parabolically inducing contravariant forms. As a corollary, we deduce the existence of the Shapovalov form on a Verma module, and provide a formula for the dimension of the space of contravariant forms on the degenerate Whittaker modules M(χ,η) introduced by McDowell."}],"intvolume":"       149","publication_status":"published","publication_identifier":{"issn":["0002-9939"],"eissn":["1088-6826"]},"day":"01","author":[{"first_name":"Adam","id":"70B7FDF6-608D-11E9-9333-8535E6697425","full_name":"Brown, Adam","last_name":"Brown"},{"full_name":"Romanov, Anna","last_name":"Romanov","first_name":"Anna"}],"oa_version":"Preprint","title":"Contravariant forms on Whittaker modules","volume":149,"date_created":"2020-11-19T10:17:40Z","article_type":"original","status":"public","publication":"Proceedings of the American Mathematical Society","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"}],"ec_funded":1,"date_published":"2021-01-01T00:00:00Z","acknowledgement":"We would like to thank Peter Trapa for useful discussions, and Dragan Milicic and Arun Ram for valuable feedback on the structure of the paper. The first author acknowledges the support of the European Unions Horizon 2020 research and innovation programme under the Marie Skodowska-Curie Grant Agreement No. 754411. The second author is\r\nsupported by the National Science Foundation Award No. 1803059.","isi":1,"year":"2021","external_id":{"arxiv":["1910.08286"],"isi":["000600416300004"]},"keyword":["Applied Mathematics","General Mathematics"],"page":"37-52","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1910.08286"}],"quality_controlled":"1","article_processing_charge":"No","doi":"10.1090/proc/15205","publisher":"American Mathematical Society","_id":"8773","date_updated":"2023-08-04T11:11:47Z","type":"journal_article"},{"date_published":"2021-02-15T00:00:00Z","acknowledgement":"G. Schimperna has been partially supported by GNAMPA (Gruppo Nazionale per l'Analisi Matematica, la Probabilità e le loro Applicazioni) of INdAM (Istituto Nazionale di Alta Matematica).","status":"public","publication":"Journal of Differential Equations","external_id":{"isi":["000600845300023"],"arxiv":["2004.02618"]},"year":"2021","isi":1,"quality_controlled":"1","main_file_link":[{"url":"https://arxiv.org/abs/2004.02618","open_access":"1"}],"page":"924-970","type":"journal_article","_id":"8792","date_updated":"2023-08-04T11:12:16Z","publisher":"Elsevier","article_processing_charge":"No","doi":"10.1016/j.jde.2020.10.030","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"short":"A. Marveggio, G. Schimperna, Journal of Differential Equations 274 (2021) 924–970.","ieee":"A. Marveggio and G. Schimperna, “On a non-isothermal Cahn-Hilliard model based on a microforce balance,” <i>Journal of Differential Equations</i>, vol. 274, no. 2. Elsevier, pp. 924–970, 2021.","ama":"Marveggio A, Schimperna G. On a non-isothermal Cahn-Hilliard model based on a microforce balance. <i>Journal of Differential Equations</i>. 2021;274(2):924-970. doi:<a href=\"https://doi.org/10.1016/j.jde.2020.10.030\">10.1016/j.jde.2020.10.030</a>","mla":"Marveggio, Alice, and Giulio Schimperna. “On a Non-Isothermal Cahn-Hilliard Model Based on a Microforce Balance.” <i>Journal of Differential Equations</i>, vol. 274, no. 2, Elsevier, 2021, pp. 924–70, doi:<a href=\"https://doi.org/10.1016/j.jde.2020.10.030\">10.1016/j.jde.2020.10.030</a>.","apa":"Marveggio, A., &#38; Schimperna, G. (2021). On a non-isothermal Cahn-Hilliard model based on a microforce balance. <i>Journal of Differential Equations</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jde.2020.10.030\">https://doi.org/10.1016/j.jde.2020.10.030</a>","chicago":"Marveggio, Alice, and Giulio Schimperna. “On a Non-Isothermal Cahn-Hilliard Model Based on a Microforce Balance.” <i>Journal of Differential Equations</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.jde.2020.10.030\">https://doi.org/10.1016/j.jde.2020.10.030</a>.","ista":"Marveggio A, Schimperna G. 2021. On a non-isothermal Cahn-Hilliard model based on a microforce balance. Journal of Differential Equations. 274(2), 924–970."},"issue":"2","language":[{"iso":"eng"}],"oa":1,"department":[{"_id":"JuFi"}],"month":"02","arxiv":1,"publication_status":"published","publication_identifier":{"eissn":["10902732"],"issn":["00220396"]},"intvolume":"       274","abstract":[{"lang":"eng","text":"This paper is concerned with a non-isothermal Cahn-Hilliard model based on a microforce balance. The model was derived by A. Miranville and G. Schimperna starting from the two fundamental laws of Thermodynamics, following M. Gurtin's two-scale approach. The main working assumptions are made on the behaviour of the heat flux as the absolute temperature tends to zero and to infinity. A suitable Ginzburg-Landau free energy is considered. Global-in-time existence for the initial-boundary value problem associated to the entropy formulation and, in a subcase, also to the weak formulation of the model is proved by deriving suitable a priori estimates and by showing weak sequential stability of families of approximating solutions. At last, some highlights are given regarding a possible approximation scheme compatible with the a-priori estimates available for the system."}],"date_created":"2020-11-22T23:01:26Z","article_type":"original","volume":274,"oa_version":"Preprint","title":"On a non-isothermal Cahn-Hilliard model based on a microforce balance","day":"15","scopus_import":"1","author":[{"id":"25647992-AA84-11E9-9D75-8427E6697425","full_name":"Marveggio, Alice","last_name":"Marveggio","first_name":"Alice"},{"last_name":"Schimperna","full_name":"Schimperna, Giulio","first_name":"Giulio"}]},{"article_type":"original","date_created":"2020-11-22T23:01:26Z","volume":289,"title":"Optimal strategies for selecting coordinators","oa_version":"Published Version","author":[{"first_name":"Martin","full_name":"Zeiner, Martin","last_name":"Zeiner"},{"first_name":"Ulrich","last_name":"Schmid","full_name":"Schmid, Ulrich"},{"first_name":"Krishnendu","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee"}],"scopus_import":"1","day":"31","publication_identifier":{"issn":["0166218X"]},"publication_status":"published","file_date_updated":"2021-02-04T11:28:42Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"intvolume":"       289","abstract":[{"lang":"eng","text":"We study optimal election sequences for repeatedly selecting a (very) small group of leaders among a set of participants (players) with publicly known unique ids. In every time slot, every player has to select exactly one player that it considers to be the current leader, oblivious to the selection of the other players, but with the overarching goal of maximizing a given parameterized global (“social”) payoff function in the limit. We consider a quite generic model, where the local payoff achieved by a given player depends, weighted by some arbitrary but fixed real parameter, on the number of different leaders chosen in a round, the number of players that choose the given player as the leader, and whether the chosen leader has changed w.r.t. the previous round or not. The social payoff can be the maximum, average or minimum local payoff of the players. Possible applications include quite diverse examples such as rotating coordinator-based distributed algorithms and long-haul formation flying of social birds. Depending on the weights and the particular social payoff, optimal sequences can be very different, from simple round-robin where all players chose the same leader alternatingly every time slot to very exotic patterns, where a small group of leaders (at most 2) is elected in every time slot. Moreover, we study the question if and when a single player would not benefit w.r.t. its local payoff when deviating from the given optimal sequence, i.e., when our optimal sequences are Nash equilibria in the restricted strategy space of oblivious strategies. As this is the case for many parameterizations of our model, our results reveal that no punishment is needed to make it rational for the players to optimize the social payoff."}],"has_accepted_license":"1","file":[{"date_created":"2021-02-04T11:28:42Z","file_size":652739,"creator":"dernst","date_updated":"2021-02-04T11:28:42Z","file_id":"9089","file_name":"2021_DiscreteApplMath_Zeiner.pdf","success":1,"content_type":"application/pdf","access_level":"open_access","relation":"main_file","checksum":"f1039ff5a2d6ca116720efdb84ee9d5e"}],"department":[{"_id":"KrCh"}],"month":"01","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","issue":"1","citation":{"ama":"Zeiner M, Schmid U, Chatterjee K. Optimal strategies for selecting coordinators. <i>Discrete Applied Mathematics</i>. 2021;289(1):392-415. doi:<a href=\"https://doi.org/10.1016/j.dam.2020.10.022\">10.1016/j.dam.2020.10.022</a>","short":"M. Zeiner, U. Schmid, K. Chatterjee, Discrete Applied Mathematics 289 (2021) 392–415.","ieee":"M. Zeiner, U. Schmid, and K. Chatterjee, “Optimal strategies for selecting coordinators,” <i>Discrete Applied Mathematics</i>, vol. 289, no. 1. Elsevier, pp. 392–415, 2021.","ista":"Zeiner M, Schmid U, Chatterjee K. 2021. Optimal strategies for selecting coordinators. Discrete Applied Mathematics. 289(1), 392–415.","chicago":"Zeiner, Martin, Ulrich Schmid, and Krishnendu Chatterjee. “Optimal Strategies for Selecting Coordinators.” <i>Discrete Applied Mathematics</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.dam.2020.10.022\">https://doi.org/10.1016/j.dam.2020.10.022</a>.","mla":"Zeiner, Martin, et al. “Optimal Strategies for Selecting Coordinators.” <i>Discrete Applied Mathematics</i>, vol. 289, no. 1, Elsevier, 2021, pp. 392–415, doi:<a href=\"https://doi.org/10.1016/j.dam.2020.10.022\">10.1016/j.dam.2020.10.022</a>.","apa":"Zeiner, M., Schmid, U., &#38; Chatterjee, K. (2021). Optimal strategies for selecting coordinators. <i>Discrete Applied Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.dam.2020.10.022\">https://doi.org/10.1016/j.dam.2020.10.022</a>"},"language":[{"iso":"eng"}],"oa":1,"type":"journal_article","date_updated":"2023-08-04T11:12:41Z","_id":"8793","publisher":"Elsevier","doi":"10.1016/j.dam.2020.10.022","article_processing_charge":"No","quality_controlled":"1","ddc":["510"],"page":"392-415","external_id":{"isi":["000596823800035"]},"isi":1,"year":"2021","date_published":"2021-01-31T00:00:00Z","acknowledgement":"We are grateful to Matthias Függer and Thomas Nowak for having raised our interest in the problem studied in this paper.\r\nThis work has been supported the Austrian Science Fund (FWF) projects S11405, S11407 (RiSE), and P28182 (ADynNet).","project":[{"grant_number":"S11402-N23","name":"Rigorous Systems Engineering","call_identifier":"FWF","_id":"25F2ACDE-B435-11E9-9278-68D0E5697425"},{"name":"Game Theory","grant_number":"S11407","call_identifier":"FWF","_id":"25863FF4-B435-11E9-9278-68D0E5697425"}],"status":"public","publication":"Discrete Applied Mathematics"},{"file":[{"file_id":"9081","date_created":"2021-02-03T15:00:30Z","file_size":790526,"creator":"dernst","date_updated":"2021-02-03T15:00:30Z","relation":"main_file","checksum":"6f451f9c2b74bedbc30cf884a3e02670","success":1,"file_name":"2021_CommMathPhys_Runkel.pdf","access_level":"open_access","content_type":"application/pdf"}],"department":[{"_id":"MiLe"}],"month":"01","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","issue":"1","citation":{"ieee":"I. Runkel and L. Szegedy, “Area-dependent quantum field theory,” <i>Communications in Mathematical Physics</i>, vol. 381, no. 1. Springer Nature, pp. 83–117, 2021.","short":"I. Runkel, L. Szegedy, Communications in Mathematical Physics 381 (2021) 83–117.","ama":"Runkel I, Szegedy L. Area-dependent quantum field theory. <i>Communications in Mathematical Physics</i>. 2021;381(1):83–117. doi:<a href=\"https://doi.org/10.1007/s00220-020-03902-1\">10.1007/s00220-020-03902-1</a>","apa":"Runkel, I., &#38; Szegedy, L. (2021). Area-dependent quantum field theory. <i>Communications in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00220-020-03902-1\">https://doi.org/10.1007/s00220-020-03902-1</a>","mla":"Runkel, Ingo, and Lorant Szegedy. “Area-Dependent Quantum Field Theory.” <i>Communications in Mathematical Physics</i>, vol. 381, no. 1, Springer Nature, 2021, pp. 83–117, doi:<a href=\"https://doi.org/10.1007/s00220-020-03902-1\">10.1007/s00220-020-03902-1</a>.","chicago":"Runkel, Ingo, and Lorant Szegedy. “Area-Dependent Quantum Field Theory.” <i>Communications in Mathematical Physics</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/s00220-020-03902-1\">https://doi.org/10.1007/s00220-020-03902-1</a>.","ista":"Runkel I, Szegedy L. 2021. Area-dependent quantum field theory. Communications in Mathematical Physics. 381(1), 83–117."},"language":[{"iso":"eng"}],"oa":1,"article_type":"original","date_created":"2020-11-29T23:01:17Z","volume":381,"oa_version":"Published Version","title":"Area-dependent quantum field theory","author":[{"last_name":"Runkel","full_name":"Runkel, Ingo","first_name":"Ingo"},{"last_name":"Szegedy","full_name":"Szegedy, Lorant","id":"7943226E-220E-11EA-94C7-D59F3DDC885E","orcid":"0000-0003-2834-5054","first_name":"Lorant"}],"scopus_import":"1","day":"01","publication_identifier":{"issn":["00103616"],"eissn":["14320916"]},"publication_status":"published","file_date_updated":"2021-02-03T15:00:30Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"intvolume":"       381","abstract":[{"text":"Area-dependent quantum field theory is a modification of two-dimensional topological quantum field theory, where one equips each connected component of a bordism with a positive real number—interpreted as area—which behaves additively under glueing. As opposed to topological theories, in area-dependent theories the state spaces can be infinite-dimensional. We introduce the notion of regularised Frobenius algebras in Hilbert spaces and show that area-dependent theories are in one-to-one correspondence to commutative regularised Frobenius algebras. We also provide a state sum construction for area-dependent theories. Our main example is two-dimensional Yang–Mills theory with compact gauge group, which we treat in detail.","lang":"eng"}],"has_accepted_license":"1","external_id":{"isi":["000591139000001"]},"year":"2021","isi":1,"date_published":"2021-01-01T00:00:00Z","acknowledgement":"The authors thank Yuki Arano, Nils Carqueville, Alexei Davydov, Reiner Lauterbach, Pau Enrique Moliner, Chris Heunen, André Henriques, Ehud Meir, Catherine Meusburger, Gregor Schaumann, Richard Szabo and Stefan Wagner for helpful discussions and comments. We also thank the referees for their detailed comments which significantly improved the exposition of this paper. LS is supported by the DFG Research Training Group 1670 “Mathematics Inspired by String Theory and Quantum Field Theory”. Open access funding provided by Institute of Science and Technology (IST Austria).","project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"publication":"Communications in Mathematical Physics","status":"public","type":"journal_article","date_updated":"2023-08-04T11:13:35Z","_id":"8816","publisher":"Springer Nature","doi":"10.1007/s00220-020-03902-1","article_processing_charge":"Yes (via OA deal)","quality_controlled":"1","ddc":["510"],"page":"83–117"},{"department":[{"_id":"VlKo"}],"month":"04","issue":"2","citation":{"mla":"Shehu, Yekini, et al. “An Inertial Subgradient Extragradient Algorithm Extended to Pseudomonotone Equilibrium Problems.” <i>Mathematical Methods of Operations Research</i>, vol. 93, no. 2, Springer Nature, 2021, pp. 213–42, doi:<a href=\"https://doi.org/10.1007/s00186-020-00730-w\">10.1007/s00186-020-00730-w</a>.","apa":"Shehu, Y., Iyiola, O. S., Thong, D. V., &#38; Van, N. T. C. (2021). An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems. <i>Mathematical Methods of Operations Research</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00186-020-00730-w\">https://doi.org/10.1007/s00186-020-00730-w</a>","chicago":"Shehu, Yekini, Olaniyi S. Iyiola, Duong Viet Thong, and Nguyen Thi Cam Van. “An Inertial Subgradient Extragradient Algorithm Extended to Pseudomonotone Equilibrium Problems.” <i>Mathematical Methods of Operations Research</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/s00186-020-00730-w\">https://doi.org/10.1007/s00186-020-00730-w</a>.","ista":"Shehu Y, Iyiola OS, Thong DV, Van NTC. 2021. An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems. Mathematical Methods of Operations Research. 93(2), 213–242.","short":"Y. Shehu, O.S. Iyiola, D.V. Thong, N.T.C. Van, Mathematical Methods of Operations Research 93 (2021) 213–242.","ieee":"Y. Shehu, O. S. Iyiola, D. V. Thong, and N. T. C. Van, “An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems,” <i>Mathematical Methods of Operations Research</i>, vol. 93, no. 2. Springer Nature, pp. 213–242, 2021.","ama":"Shehu Y, Iyiola OS, Thong DV, Van NTC. An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems. <i>Mathematical Methods of Operations Research</i>. 2021;93(2):213-242. doi:<a href=\"https://doi.org/10.1007/s00186-020-00730-w\">10.1007/s00186-020-00730-w</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","language":[{"iso":"eng"}],"volume":93,"article_type":"original","date_created":"2020-11-29T23:01:18Z","author":[{"last_name":"Shehu","id":"3FC7CB58-F248-11E8-B48F-1D18A9856A87","full_name":"Shehu, Yekini","orcid":"0000-0001-9224-7139","first_name":"Yekini"},{"first_name":"Olaniyi S.","last_name":"Iyiola","full_name":"Iyiola, Olaniyi S."},{"first_name":"Duong Viet","full_name":"Thong, Duong Viet","last_name":"Thong"},{"first_name":"Nguyen Thi Cam","full_name":"Van, Nguyen Thi Cam","last_name":"Van"}],"day":"01","scopus_import":"1","oa_version":"None","title":"An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems","publication_identifier":{"issn":["1432-2994"],"eissn":["1432-5217"]},"publication_status":"published","intvolume":"        93","abstract":[{"lang":"eng","text":"The paper introduces an inertial extragradient subgradient method with self-adaptive step sizes for solving equilibrium problems in real Hilbert spaces. Weak convergence of the proposed method is obtained under the condition that the bifunction is pseudomonotone and Lipchitz continuous. Linear convergence is also given when the bifunction is strongly pseudomonotone and Lipchitz continuous. Numerical implementations and comparisons with other related inertial methods are given using test problems including a real-world application to Nash–Cournot oligopolistic electricity market equilibrium model."}],"year":"2021","isi":1,"external_id":{"isi":["000590497300001"]},"ec_funded":1,"acknowledgement":"The authors are grateful to the two referees and the Associate Editor for their comments and suggestions which have improved the earlier version of the paper greatly. The project of Yekini Shehu has received funding from the European Research Council (ERC) under the European Union’s Seventh Framework Program (FP7 - 2007-2013) (Grant agreement No. 616160).","date_published":"2021-04-01T00:00:00Z","project":[{"_id":"25FBA906-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Discrete Optimization in Computer Vision: Theory and Practice","grant_number":"616160"}],"status":"public","publication":"Mathematical Methods of Operations Research","date_updated":"2023-10-10T09:30:23Z","_id":"8817","type":"journal_article","doi":"10.1007/s00186-020-00730-w","article_processing_charge":"No","publisher":"Springer Nature","quality_controlled":"1","page":"213-242"},{"pmid":1,"acknowledgement":"We thank O. Eschenko and M. Constantinou for providing feedback on earlier versions of this work, and J. Werner and M. Schnabel for technical support during the development of this study. This research was supported by the Max Planck Society.","date_published":"2021-01-07T00:00:00Z","status":"public","publication":"Nature","isi":1,"year":"2021","external_id":{"isi":["000591047800005"],"pmid":["33208951"]},"related_material":{"link":[{"url":"https://doi.org/10.1038/s41586-020-03068-9","relation":"erratum"}]},"quality_controlled":"1","page":"96-102","date_updated":"2023-08-04T11:13:08Z","_id":"8818","type":"journal_article","doi":"10.1038/s41586-020-2914-4","article_processing_charge":"No","publisher":"Springer Nature","issue":"7840","citation":{"apa":"Ramirez Villegas, J. F., Besserve, M., Murayama, Y., Evrard, H. C., Oeltermann, A., &#38; Logothetis, N. K. (2021). Coupling of hippocampal theta and ripples with pontogeniculooccipital waves. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-020-2914-4\">https://doi.org/10.1038/s41586-020-2914-4</a>","mla":"Ramirez Villegas, Juan F., et al. “Coupling of Hippocampal Theta and Ripples with Pontogeniculooccipital Waves.” <i>Nature</i>, vol. 589, no. 7840, Springer Nature, 2021, pp. 96–102, doi:<a href=\"https://doi.org/10.1038/s41586-020-2914-4\">10.1038/s41586-020-2914-4</a>.","ista":"Ramirez Villegas JF, Besserve M, Murayama Y, Evrard HC, Oeltermann A, Logothetis NK. 2021. Coupling of hippocampal theta and ripples with pontogeniculooccipital waves. Nature. 589(7840), 96–102.","chicago":"Ramirez Villegas, Juan F, Michel Besserve, Yusuke Murayama, Henry C. Evrard, Axel Oeltermann, and Nikos K. Logothetis. “Coupling of Hippocampal Theta and Ripples with Pontogeniculooccipital Waves.” <i>Nature</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1038/s41586-020-2914-4\">https://doi.org/10.1038/s41586-020-2914-4</a>.","ieee":"J. F. Ramirez Villegas, M. Besserve, Y. Murayama, H. C. Evrard, A. Oeltermann, and N. K. Logothetis, “Coupling of hippocampal theta and ripples with pontogeniculooccipital waves,” <i>Nature</i>, vol. 589, no. 7840. Springer Nature, pp. 96–102, 2021.","short":"J.F. Ramirez Villegas, M. Besserve, Y. Murayama, H.C. Evrard, A. Oeltermann, N.K. Logothetis, Nature 589 (2021) 96–102.","ama":"Ramirez Villegas JF, Besserve M, Murayama Y, Evrard HC, Oeltermann A, Logothetis NK. Coupling of hippocampal theta and ripples with pontogeniculooccipital waves. <i>Nature</i>. 2021;589(7840):96-102. doi:<a href=\"https://doi.org/10.1038/s41586-020-2914-4\">10.1038/s41586-020-2914-4</a>"},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","language":[{"iso":"eng"}],"department":[{"_id":"JoCs"}],"month":"01","publication_identifier":{"issn":["00280836"],"eissn":["14764687"]},"publication_status":"published","abstract":[{"lang":"eng","text":"The hippocampus has a major role in encoding and consolidating long-term memories, and undergoes plastic changes during sleep1. These changes require precise homeostatic control by subcortical neuromodulatory structures2. The underlying mechanisms of this phenomenon, however, remain unknown. Here, using multi-structure recordings in macaque monkeys, we show that the brainstem transiently modulates hippocampal network events through phasic pontine waves known as pontogeniculooccipital waves (PGO waves). Two physiologically distinct types of PGO wave appear to occur sequentially, selectively influencing high-frequency ripples and low-frequency theta events, respectively. The two types of PGO wave are associated with opposite hippocampal spike-field coupling, prompting periods of high neural synchrony of neural populations during periods of ripple and theta instances. The coupling between PGO waves and ripples, classically associated with distinct sleep stages, supports the notion that a global coordination mechanism of hippocampal sleep dynamics by cholinergic pontine transients may promote systems and synaptic memory consolidation as well as synaptic homeostasis."}],"intvolume":"       589","volume":589,"article_type":"original","date_created":"2020-11-29T23:01:19Z","author":[{"id":"44B06F76-F248-11E8-B48F-1D18A9856A87","full_name":"Ramirez Villegas, Juan F","last_name":"Ramirez Villegas","first_name":"Juan F"},{"last_name":"Besserve","full_name":"Besserve, Michel","first_name":"Michel"},{"first_name":"Yusuke","last_name":"Murayama","full_name":"Murayama, Yusuke"},{"full_name":"Evrard, Henry C.","last_name":"Evrard","first_name":"Henry C."},{"full_name":"Oeltermann, Axel","last_name":"Oeltermann","first_name":"Axel"},{"first_name":"Nikos K.","full_name":"Logothetis, Nikos K.","last_name":"Logothetis"}],"day":"07","scopus_import":"1","title":"Coupling of hippocampal theta and ripples with pontogeniculooccipital waves","oa_version":"None"},{"month":"01","file":[{"content_type":"application/pdf","access_level":"open_access","file_name":"2021_CurrentBiology_MarquesBueno.pdf","success":1,"checksum":"30b3393d841fb2b1e2b22fb42b5c8fff","relation":"main_file","creator":"dernst","date_updated":"2021-02-04T11:37:50Z","date_created":"2021-02-04T11:37:50Z","file_size":3458646,"file_id":"9090"}],"department":[{"_id":"JiFr"}],"language":[{"iso":"eng"}],"oa":1,"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","issue":"1","citation":{"chicago":"Marquès-Bueno, MM, L Armengot, LC Noack, J Bareille, Lesia Rodriguez Solovey, MP Platre, V Bayle, et al. “Auxin-Regulated Reversible Inhibition of TMK1 Signaling by MAKR2 Modulates the Dynamics of Root Gravitropism.” <i>Current Biology</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.cub.2020.10.011\">https://doi.org/10.1016/j.cub.2020.10.011</a>.","ista":"Marquès-Bueno M, Armengot L, Noack L, Bareille J, Rodriguez Solovey L, Platre M, Bayle V, Liu M, Opdenacker D, Vanneste S, Möller B, Nimchuk Z, Beeckman T, Caño-Delgado A, Friml J, Jaillais Y. 2021. Auxin-regulated reversible inhibition of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism. Current Biology. 31(1).","mla":"Marquès-Bueno, MM, et al. “Auxin-Regulated Reversible Inhibition of TMK1 Signaling by MAKR2 Modulates the Dynamics of Root Gravitropism.” <i>Current Biology</i>, vol. 31, no. 1, Elsevier, 2021, doi:<a href=\"https://doi.org/10.1016/j.cub.2020.10.011\">10.1016/j.cub.2020.10.011</a>.","apa":"Marquès-Bueno, M., Armengot, L., Noack, L., Bareille, J., Rodriguez Solovey, L., Platre, M., … Jaillais, Y. (2021). Auxin-regulated reversible inhibition of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2020.10.011\">https://doi.org/10.1016/j.cub.2020.10.011</a>","ama":"Marquès-Bueno M, Armengot L, Noack L, et al. Auxin-regulated reversible inhibition of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism. <i>Current Biology</i>. 2021;31(1). doi:<a href=\"https://doi.org/10.1016/j.cub.2020.10.011\">10.1016/j.cub.2020.10.011</a>","short":"M. Marquès-Bueno, L. Armengot, L. Noack, J. Bareille, L. Rodriguez Solovey, M. Platre, V. Bayle, M. Liu, D. Opdenacker, S. Vanneste, B. Möller, Z. Nimchuk, T. Beeckman, A. Caño-Delgado, J. Friml, Y. Jaillais, Current Biology 31 (2021).","ieee":"M. Marquès-Bueno <i>et al.</i>, “Auxin-regulated reversible inhibition of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism,” <i>Current Biology</i>, vol. 31, no. 1. Elsevier, 2021."},"title":"Auxin-regulated reversible inhibition of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism","oa_version":"Published Version","author":[{"full_name":"Marquès-Bueno, MM","last_name":"Marquès-Bueno","first_name":"MM"},{"last_name":"Armengot","full_name":"Armengot, L","first_name":"L"},{"last_name":"Noack","full_name":"Noack, LC","first_name":"LC"},{"first_name":"J","last_name":"Bareille","full_name":"Bareille, J"},{"first_name":"Lesia","orcid":"0000-0002-7244-7237","last_name":"Rodriguez Solovey","id":"3922B506-F248-11E8-B48F-1D18A9856A87","full_name":"Rodriguez Solovey, Lesia"},{"last_name":"Platre","full_name":"Platre, MP","first_name":"MP"},{"first_name":"V","last_name":"Bayle","full_name":"Bayle, V"},{"first_name":"M","full_name":"Liu, M","last_name":"Liu"},{"first_name":"D","full_name":"Opdenacker, D","last_name":"Opdenacker"},{"full_name":"Vanneste, S","last_name":"Vanneste","first_name":"S"},{"first_name":"BK","last_name":"Möller","full_name":"Möller, BK"},{"full_name":"Nimchuk, ZL","last_name":"Nimchuk","first_name":"ZL"},{"full_name":"Beeckman, T","last_name":"Beeckman","first_name":"T"},{"full_name":"Caño-Delgado, AI","last_name":"Caño-Delgado","first_name":"AI"},{"first_name":"Jiří","orcid":"0000-0002-8302-7596","last_name":"Friml","full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Jaillais, Y","last_name":"Jaillais","first_name":"Y"}],"day":"11","article_type":"original","date_created":"2020-12-01T13:39:46Z","volume":31,"intvolume":"        31","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"Plants are able to orient their growth according to gravity, which ultimately controls both shoot and root architecture.1 Gravitropism is a dynamic process whereby gravistimulation induces the asymmetric distribution of the plant hormone auxin, leading to asymmetric growth, organ bending, and subsequent reset of auxin distribution back to the original pre-gravistimulation situation.1,  2,  3 Differential auxin accumulation during the gravitropic response depends on the activity of polarly localized PIN-FORMED (PIN) auxin-efflux carriers.1,  2,  3,  4 In particular, the timing of this dynamic response is regulated by PIN2,5,6 but the underlying molecular mechanisms are poorly understood. Here, we show that MEMBRANE ASSOCIATED KINASE REGULATOR2 (MAKR2) controls the pace of the root gravitropic response. We found that MAKR2 is required for the PIN2 asymmetry during gravitropism by acting as a negative regulator of the cell-surface signaling mediated by the receptor-like kinase TRANSMEMBRANE KINASE1 (TMK1).2,7,  8,  9,  10 Furthermore, we show that the MAKR2 inhibitory effect on TMK1 signaling is antagonized by auxin itself, which triggers rapid MAKR2 membrane dissociation in a TMK1-dependent manner. Our findings suggest that the timing of the root gravitropic response is orchestrated by the reversible inhibition of the TMK1 signaling pathway at the cell surface."}],"has_accepted_license":"1","publication_identifier":{"eissn":["1879-0445"],"issn":["0960-9822"]},"publication_status":"published","file_date_updated":"2021-02-04T11:37:50Z","external_id":{"isi":["000614361000039"],"pmid":["33157019"]},"year":"2021","isi":1,"publication":"Current Biology","status":"public","date_published":"2021-01-11T00:00:00Z","acknowledgement":"We thank the SiCE group for discussions and comments; S. Yalovsky, B. Scheres, and the NASC/ABRC collection for providing transgenic Arabidopsis lines and plasmids; L. Kalmbach and M. Barberon for the gift of pLOK180_pFR7m34GW; A. Lacroix, J. Berger, and P. Bolland for plant care; and M. Fendrych for help with microfluidics in the J.F. lab. We acknowledge\r\nthe contribution of the SFR Biosciences (UMS3444/CNRS, US8/Inser m, ENS de Lyon, UCBL) facilities: C. Lionet, E. Chatre, and J. Brocard at LBIPLATIM-MICROSCOPY for assistance with imaging, and V. GuegenChaignon and A. Page at the Protein Science Facility (PSF) for assistance with protein purification and mass spectrometry. Y.J. was funded by ERC\r\ngrant 3363360-APPL under FP/2007–2013. Y.J. and Z.L.N. were funded by an ANR- and NSF-supported ERA-CAPS project (SICOPID: ANR-17-CAPS0003-01/NSF PGRP IOS-1841917). A.I.C.-D. is funded by an ERC consolidator grant (ERC-2015-CoG–683163) and BIO2016-78955 grant from the Spanish Ministry of Economy and Competitiveness. Exchanges between the Y.J. and T.B. laboratories were funded by Tournesol grant 35656NB. B.K.M. was\r\nfunded by the Omics@vib Marie Curie COFUND and Research Foundation Flanders for a postdoctoral fellowship.","pmid":1,"publisher":"Elsevier","doi":"10.1016/j.cub.2020.10.011","article_processing_charge":"Yes (via OA deal)","type":"journal_article","date_updated":"2023-09-05T13:03:15Z","_id":"8824","ddc":["570"],"quality_controlled":"1"},{"month":"08","arxiv":1,"department":[{"_id":"GeKa"},{"_id":"NanoFab"},{"_id":"GradSch"}],"language":[{"iso":"eng"}],"oa":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"chicago":"Jirovec, Daniel, Andrea C Hofmann, Andrea Ballabio, Philipp M. Mutter, Giulio Tavani, Marc Botifoll, Alessandro Crippa, et al. “A Singlet Triplet Hole Spin Qubit in Planar Ge.” <i>Nature Materials</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1038/s41563-021-01022-2\">https://doi.org/10.1038/s41563-021-01022-2</a>.","ista":"Jirovec D, Hofmann AC, Ballabio A, Mutter PM, Tavani G, Botifoll M, Crippa A, Kukucka J, Sagi O, Martins F, Saez Mollejo J, Prieto Gonzalez I, Borovkov M, Arbiol J, Chrastina D, Isella G, Katsaros G. 2021. A singlet triplet hole spin qubit in planar Ge. Nature Materials. 20(8), 1106–1112.","mla":"Jirovec, Daniel, et al. “A Singlet Triplet Hole Spin Qubit in Planar Ge.” <i>Nature Materials</i>, vol. 20, no. 8, Springer Nature, 2021, pp. 1106–1112, doi:<a href=\"https://doi.org/10.1038/s41563-021-01022-2\">10.1038/s41563-021-01022-2</a>.","apa":"Jirovec, D., Hofmann, A. C., Ballabio, A., Mutter, P. M., Tavani, G., Botifoll, M., … Katsaros, G. (2021). A singlet triplet hole spin qubit in planar Ge. <i>Nature Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41563-021-01022-2\">https://doi.org/10.1038/s41563-021-01022-2</a>","ama":"Jirovec D, Hofmann AC, Ballabio A, et al. A singlet triplet hole spin qubit in planar Ge. <i>Nature Materials</i>. 2021;20(8):1106–1112. doi:<a href=\"https://doi.org/10.1038/s41563-021-01022-2\">10.1038/s41563-021-01022-2</a>","short":"D. Jirovec, A.C. Hofmann, A. Ballabio, P.M. Mutter, G. Tavani, M. Botifoll, A. Crippa, J. Kukucka, O. Sagi, F. Martins, J. Saez Mollejo, I. Prieto Gonzalez, M. Borovkov, J. Arbiol, D. Chrastina, G. Isella, G. Katsaros, Nature Materials 20 (2021) 1106–1112.","ieee":"D. Jirovec <i>et al.</i>, “A singlet triplet hole spin qubit in planar Ge,” <i>Nature Materials</i>, vol. 20, no. 8. Springer Nature, pp. 1106–1112, 2021."},"issue":"8","title":"A singlet triplet hole spin qubit in planar Ge","oa_version":"Preprint","day":"01","scopus_import":"1","author":[{"first_name":"Daniel","orcid":"0000-0002-7197-4801","id":"4C473F58-F248-11E8-B48F-1D18A9856A87","full_name":"Jirovec, Daniel","last_name":"Jirovec"},{"first_name":"Andrea C","last_name":"Hofmann","full_name":"Hofmann, Andrea C","id":"340F461A-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Ballabio, Andrea","last_name":"Ballabio","first_name":"Andrea"},{"last_name":"Mutter","full_name":"Mutter, Philipp M.","first_name":"Philipp M."},{"last_name":"Tavani","full_name":"Tavani, Giulio","first_name":"Giulio"},{"first_name":"Marc","full_name":"Botifoll, Marc","last_name":"Botifoll"},{"id":"1F2B21A2-F6E7-11E9-9B82-F7DBE5697425","full_name":"Crippa, Alessandro","last_name":"Crippa","first_name":"Alessandro","orcid":"0000-0002-2968-611X"},{"first_name":"Josip","last_name":"Kukucka","full_name":"Kukucka, Josip","id":"3F5D8856-F248-11E8-B48F-1D18A9856A87"},{"id":"71616374-A8E9-11E9-A7CA-09ECE5697425","full_name":"Sagi, Oliver","last_name":"Sagi","first_name":"Oliver"},{"first_name":"Frederico","orcid":"0000-0003-2668-2401","id":"38F80F9A-1CB8-11EA-BC76-B49B3DDC885E","full_name":"Martins, Frederico","last_name":"Martins"},{"last_name":"Saez Mollejo","full_name":"Saez Mollejo, Jaime","id":"e0390f72-f6e0-11ea-865d-862393336714","first_name":"Jaime"},{"first_name":"Ivan","orcid":"0000-0002-7370-5357","full_name":"Prieto Gonzalez, Ivan","id":"2A307FE2-F248-11E8-B48F-1D18A9856A87","last_name":"Prieto Gonzalez"},{"first_name":"Maksim","last_name":"Borovkov","full_name":"Borovkov, Maksim","id":"2ac7a0a2-3562-11eb-9256-fbd18ea55087"},{"full_name":"Arbiol, Jordi","last_name":"Arbiol","first_name":"Jordi"},{"full_name":"Chrastina, Daniel","last_name":"Chrastina","first_name":"Daniel"},{"first_name":"Giovanni","full_name":"Isella, Giovanni","last_name":"Isella"},{"orcid":"0000-0001-8342-202X","first_name":"Georgios","full_name":"Katsaros, Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","last_name":"Katsaros"}],"date_created":"2020-12-02T10:50:47Z","article_type":"original","volume":20,"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"abstract":[{"lang":"eng","text":"Spin qubits are considered to be among the most promising candidates for building a quantum processor. Group IV hole spin qubits have moved into the focus of interest due to the ease of operation and compatibility with Si technology. In addition, Ge offers the option for monolithic superconductor-semiconductor integration. Here we demonstrate a hole spin qubit operating at fields below 10 mT, the critical field of Al, by exploiting the large out-of-plane hole g-factors in planar Ge and by encoding the qubit into the singlet-triplet states of a double quantum dot. We observe electrically controlled X and Z-rotations with tunable frequencies exceeding 100 MHz and dephasing times of 1μs which we extend beyond 15μs with echo techniques. These results show that Ge hole singlet triplet qubits outperform their electronic Si and GaAs based counterparts in speed and coherence, respectively. In addition, they are on par with Ge single spin qubits, but can be operated at much lower fields underlining their potential for on chip integration with superconducting technologies."}],"intvolume":"        20","publication_identifier":{"eissn":["1476-4660"],"issn":["1476-1122"]},"publication_status":"published","related_material":{"record":[{"relation":"research_data","status":"public","id":"9323"},{"id":"10058","relation":"dissertation_contains","status":"public"}],"link":[{"relation":"press_release","description":"News on IST Homepage","url":"https://ist.ac.at/en/news/quantum-computing-with-holes/"}]},"external_id":{"arxiv":["2011.13755"],"isi":["000657596400001"]},"isi":1,"year":"2021","publication":"Nature Materials","status":"public","project":[{"_id":"26A151DA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Majorana bound states in Ge/SiGe heterostructures","grant_number":"844511"},{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"},{"_id":"2641CE5E-B435-11E9-9278-68D0E5697425","name":"Hole spin orbit qubits in Ge quantum wells","grant_number":"P30207","call_identifier":"FWF"},{"_id":"262116AA-B435-11E9-9278-68D0E5697425","name":"Hybrid Semiconductor - Superconductor Quantum Devices"}],"date_published":"2021-08-01T00:00:00Z","acknowledgement":"This research was supported by the Scientific Service Units of Institute of Science and Technology (IST) Austria through resources provided by the Miba Machine Shop and the nanofabrication facility, and was made possible with the support of the NOMIS Foundation. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under Marie Sklodowska-Curie grant agreements no. 844511 and no. 75441, and by the Austrian Science Fund FWF-P 30207 project. A.B. acknowledges support from the European Union Horizon 2020 FET project microSPIRE, no. 766955. M. Botifoll and J.A. acknowledge funding from Generalitat de Catalunya 2017 SGR 327. The Catalan Institute of Nanoscience and Nanotechnology (ICN2) is supported by the Severo Ochoa programme from the Spanish Ministery of Economy (MINECO) (grant no. SEV-2017-0706) and is funded by the Catalonian Research Centre (CERCA) Programme, Generalitat de Catalunya. Part of the present work has been performed within the framework of the Universitat Autónoma de Barcelona Materials Science PhD programme. Part of the HAADF scanning transmission electron microscopy was conducted in the Laboratorio de Microscopias Avanzadas at Instituto de Nanociencia de Aragon, Universidad de Zaragoza. ICN2 acknowledge support from the Spanish Superior Council of Scientific Research (CSIC) Research Platform on Quantum Technologies PTI-001. M.B. acknowledges funding from the Catalan Agency for Management of University and Research Grants (AGAUR) Generalitat de Catalunya formation of investigators (FI) PhD grant.","ec_funded":1,"publisher":"Springer Nature","article_processing_charge":"No","doi":"10.1038/s41563-021-01022-2","type":"journal_article","_id":"8909","date_updated":"2024-03-25T23:30:14Z","page":"1106–1112","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2011.13755"}]},{"citation":{"ama":"Valentini M, Peñaranda F, Hofmann AC, et al. Nontopological zero-bias peaks in full-shell nanowires induced by flux-tunable Andreev states. <i>Science</i>. 2021;373(6550). doi:<a href=\"https://doi.org/10.1126/science.abf1513\">10.1126/science.abf1513</a>","short":"M. Valentini, F. Peñaranda, A.C. Hofmann, M. Brauns, R. Hauschild, P. Krogstrup, P. San-Jose, E. Prada, R. Aguado, G. Katsaros, Science 373 (2021).","ieee":"M. Valentini <i>et al.</i>, “Nontopological zero-bias peaks in full-shell nanowires induced by flux-tunable Andreev states,” <i>Science</i>, vol. 373, no. 6550. American Association for the Advancement of Science, 2021.","ista":"Valentini M, Peñaranda F, Hofmann AC, Brauns M, Hauschild R, Krogstrup P, San-Jose P, Prada E, Aguado R, Katsaros G. 2021. Nontopological zero-bias peaks in full-shell nanowires induced by flux-tunable Andreev states. Science. 373(6550), 82–88.","chicago":"Valentini, Marco, Fernando Peñaranda, Andrea C Hofmann, Matthias Brauns, Robert Hauschild, Peter Krogstrup, Pablo San-Jose, Elsa Prada, Ramón Aguado, and Georgios Katsaros. “Nontopological Zero-Bias Peaks in Full-Shell Nanowires Induced by Flux-Tunable Andreev States.” <i>Science</i>. American Association for the Advancement of Science, 2021. <a href=\"https://doi.org/10.1126/science.abf1513\">https://doi.org/10.1126/science.abf1513</a>.","mla":"Valentini, Marco, et al. “Nontopological Zero-Bias Peaks in Full-Shell Nanowires Induced by Flux-Tunable Andreev States.” <i>Science</i>, vol. 373, no. 6550, 82–88, American Association for the Advancement of Science, 2021, doi:<a href=\"https://doi.org/10.1126/science.abf1513\">10.1126/science.abf1513</a>.","apa":"Valentini, M., Peñaranda, F., Hofmann, A. C., Brauns, M., Hauschild, R., Krogstrup, P., … Katsaros, G. (2021). Nontopological zero-bias peaks in full-shell nanowires induced by flux-tunable Andreev states. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.abf1513\">https://doi.org/10.1126/science.abf1513</a>"},"issue":"6550","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa":1,"language":[{"iso":"eng"}],"department":[{"_id":"GeKa"},{"_id":"Bio"}],"article_number":"82-88","month":"07","arxiv":1,"publication_status":"published","publication_identifier":{"eissn":["10959203"],"issn":["00368075"]},"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"intvolume":"       373","abstract":[{"lang":"eng","text":"A semiconducting nanowire fully wrapped by a superconducting shell has been proposed as a platform for obtaining Majorana modes at small magnetic fields. In this study, we demonstrate that the appearance of subgap states in such structures is actually governed by the junction region in tunneling spectroscopy measurements and not the full-shell nanowire itself. Short tunneling regions never show subgap states, whereas longer junctions always do. This can be understood in terms of quantum dots forming in the junction and hosting Andreev levels in the Yu-Shiba-Rusinov regime. The intricate magnetic field dependence of the Andreev levels, through both the Zeeman and Little-Parks effects, may result in robust zero-bias peaks—features that could be easily misinterpreted as originating from Majorana zero modes but are unrelated to topological superconductivity."}],"volume":373,"date_created":"2020-12-02T10:51:52Z","article_type":"original","day":"02","scopus_import":"1","author":[{"first_name":"Marco","last_name":"Valentini","full_name":"Valentini, Marco","id":"C0BB2FAC-D767-11E9-B658-BC13E6697425"},{"full_name":"Peñaranda, Fernando","last_name":"Peñaranda","first_name":"Fernando"},{"first_name":"Andrea C","last_name":"Hofmann","id":"340F461A-F248-11E8-B48F-1D18A9856A87","full_name":"Hofmann, Andrea C"},{"full_name":"Brauns, Matthias","id":"33F94E3C-F248-11E8-B48F-1D18A9856A87","last_name":"Brauns","first_name":"Matthias"},{"last_name":"Hauschild","full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9843-3522","first_name":"Robert"},{"first_name":"Peter","full_name":"Krogstrup, Peter","last_name":"Krogstrup"},{"full_name":"San-Jose, Pablo","last_name":"San-Jose","first_name":"Pablo"},{"first_name":"Elsa","last_name":"Prada","full_name":"Prada, Elsa"},{"first_name":"Ramón","last_name":"Aguado","full_name":"Aguado, Ramón"},{"last_name":"Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","full_name":"Katsaros, Georgios","orcid":"0000-0001-8342-202X","first_name":"Georgios"}],"oa_version":"Submitted Version","title":"Nontopological zero-bias peaks in full-shell nanowires induced by flux-tunable Andreev states","ec_funded":1,"acknowledgement":"The authors thank A. Higginbotham, E. J. H. Lee and F. R. Martins for helpful discussions. This research was supported by the Scientific Service Units of IST Austria through resources provided by the MIBA Machine Shop and the nanofabrication facility; the NOMIS Foundation and Microsoft; the European Union’s Horizon 2020 research and innovation program under the Marie SklodowskaCurie grant agreement No 844511; the FETOPEN Grant Agreement No. 828948; the European Research Commission through the grant agreement HEMs-DAM No 716655; the Spanish Ministry of Science and Innovation through Grants PGC2018-097018-B-I00, PCI2018-093026, FIS2016-80434-P (AEI/FEDER, EU), RYC2011-09345 (Ram´on y Cajal Programme), and the Mar´ıa de Maeztu Programme for Units of Excellence in R&D (CEX2018-000805-M); the CSIC Research Platform on Quantum Technologies PTI-001.","date_published":"2021-07-02T00:00:00Z","publication":"Science","status":"public","project":[{"name":"Hybrid Semiconductor - Superconductor Quantum Devices","_id":"262116AA-B435-11E9-9278-68D0E5697425"},{"_id":"26A151DA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"844511","name":"Majorana bound states in Ge/SiGe heterostructures"}],"year":"2021","isi":1,"related_material":{"link":[{"relation":"press_release","url":"https://ist.ac.at/en/news/unfinding-a-split-electron/","description":"News on IST Homepage"}],"record":[{"relation":"dissertation_contains","status":"public","id":"13286"},{"status":"public","relation":"research_data","id":"9389"}]},"external_id":{"arxiv":["2008.02348"],"isi":["000677843100034"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2008.02348"}],"quality_controlled":"1","_id":"8910","date_updated":"2024-02-21T12:40:09Z","type":"journal_article","article_processing_charge":"No","doi":"10.1126/science.abf1513","publisher":"American Association for the Advancement of Science"},{"volume":6,"date_created":"2020-12-02T10:52:51Z","article_type":"original","scopus_import":"1","day":"01","author":[{"last_name":"Scappucci","full_name":"Scappucci, Giordano","first_name":"Giordano"},{"full_name":"Kloeffel, Christoph","last_name":"Kloeffel","first_name":"Christoph"},{"last_name":"Zwanenburg","full_name":"Zwanenburg, Floris A.","first_name":"Floris A."},{"last_name":"Loss","full_name":"Loss, Daniel","first_name":"Daniel"},{"full_name":"Myronov, Maksym","last_name":"Myronov","first_name":"Maksym"},{"first_name":"Jian-Jun","last_name":"Zhang","full_name":"Zhang, Jian-Jun"},{"full_name":"Franceschi, Silvano De","last_name":"Franceschi","first_name":"Silvano De"},{"first_name":"Georgios","orcid":"0000-0001-8342-202X","last_name":"Katsaros","full_name":"Katsaros, Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Veldhorst","full_name":"Veldhorst, Menno","first_name":"Menno"}],"title":"The germanium quantum information route","oa_version":"Preprint","publication_status":"published","publication_identifier":{"eissn":["2058-8437"]},"intvolume":"         6","abstract":[{"lang":"eng","text":"In the worldwide endeavor for disruptive quantum technologies, germanium is emerging as a versatile material to realize devices capable of encoding, processing, or transmitting quantum information. These devices leverage special properties of the germanium valence-band states, commonly known as holes, such as their inherently strong spin-orbit coupling and the ability to host superconducting pairing correlations. In this Review, we initially introduce the physics of holes in low-dimensional germanium structures with key insights from a theoretical perspective. We then examine the material science progress underpinning germanium-based planar heterostructures and nanowires. We review the most significant experimental results demonstrating key building blocks for quantum technology, such as an electrically driven universal quantum gate set with spin qubits in quantum dots and superconductor-semiconductor devices for hybrid quantum systems. We conclude by identifying the most promising prospects\r\ntoward scalable quantum information processing. "}],"department":[{"_id":"GeKa"}],"arxiv":1,"month":"10","citation":{"ieee":"G. Scappucci <i>et al.</i>, “The germanium quantum information route,” <i>Nature Reviews Materials</i>, vol. 6. Springer Nature, pp. 926–943, 2021.","short":"G. Scappucci, C. Kloeffel, F.A. Zwanenburg, D. Loss, M. Myronov, J.-J. Zhang, S.D. Franceschi, G. Katsaros, M. Veldhorst, Nature Reviews Materials 6 (2021) 926–943.","ama":"Scappucci G, Kloeffel C, Zwanenburg FA, et al. The germanium quantum information route. <i>Nature Reviews Materials</i>. 2021;6:926–943. doi:<a href=\"https://doi.org/10.1038/s41578-020-00262-z\">10.1038/s41578-020-00262-z</a>","apa":"Scappucci, G., Kloeffel, C., Zwanenburg, F. A., Loss, D., Myronov, M., Zhang, J.-J., … Veldhorst, M. (2021). The germanium quantum information route. <i>Nature Reviews Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41578-020-00262-z\">https://doi.org/10.1038/s41578-020-00262-z</a>","mla":"Scappucci, Giordano, et al. “The Germanium Quantum Information Route.” <i>Nature Reviews Materials</i>, vol. 6, Springer Nature, 2021, pp. 926–943, doi:<a href=\"https://doi.org/10.1038/s41578-020-00262-z\">10.1038/s41578-020-00262-z</a>.","chicago":"Scappucci, Giordano, Christoph Kloeffel, Floris A. Zwanenburg, Daniel Loss, Maksym Myronov, Jian-Jun Zhang, Silvano De Franceschi, Georgios Katsaros, and Menno Veldhorst. “The Germanium Quantum Information Route.” <i>Nature Reviews Materials</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1038/s41578-020-00262-z\">https://doi.org/10.1038/s41578-020-00262-z</a>.","ista":"Scappucci G, Kloeffel C, Zwanenburg FA, Loss D, Myronov M, Zhang J-J, Franceschi SD, Katsaros G, Veldhorst M. 2021. The germanium quantum information route. Nature Reviews Materials. 6, 926–943."},"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","oa":1,"language":[{"iso":"eng"}],"_id":"8911","date_updated":"2024-03-07T14:48:57Z","type":"journal_article","article_processing_charge":"No","doi":"10.1038/s41578-020-00262-z","publisher":"Springer Nature","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2004.08133"}],"quality_controlled":"1","page":"926–943 ","year":"2021","isi":1,"external_id":{"arxiv":["2004.08133"],"isi":["000600826100003"]},"ec_funded":1,"date_published":"2021-10-01T00:00:00Z","acknowledgement":"G.S., M.W.,F.A.Z acknowledge financial support from The Netherlands Organization for Scientific Research (NWO). F.Z., D.L., G.K. acknowledge funding from the European Union’s Horizon 2020 research and innovation programme under Grand Agreement Nr. 862046. G.K. acknowledges funding from FP7 ERC Starting Grant 335497, FWF Y 715-N30, FWF P-30207. S.D. acknowledges support from the European Union’s Horizon 2020 program under Grant\r\nAgreement No. 81050 and from the Agence Nationale de la Recherche through the TOPONANO and CMOSQSPIN projects. J.Z. acknowledges support from the National Key R&D Program of China (Grant No. 2016YFA0301701) and Strategic Priority Research Program of CAS (Grant No. XDB30000000). D.L. and C.K. acknowledge the Swiss National Science Foundation and NCCR QSIT.","status":"public","publication":"Nature Reviews Materials","project":[{"name":"Towards Spin qubits and Majorana fermions in Germanium selfassembled hut-wires","grant_number":"335497","call_identifier":"FP7","_id":"25517E86-B435-11E9-9278-68D0E5697425"},{"_id":"2552F888-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Loch Spin-Qubits und Majorana-Fermionen in Germanium","grant_number":"Y00715"},{"_id":"2641CE5E-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"P30207","name":"Hole spin orbit qubits in Ge quantum wells"}]}]