---
_id: '11733'
abstract:
- lang: eng
  text: Genetically informed, deep-phenotyped biobanks are an important research resource
    and it is imperative that the most powerful, versatile, and efficient analysis
    approaches are used. Here, we apply our recently developed Bayesian grouped mixture
    of regressions model (GMRM) in the UK and Estonian Biobanks and obtain the highest
    genomic prediction accuracy reported to date across 21 heritable traits. When
    compared to other approaches, GMRM accuracy was greater than annotation prediction
    models run in the LDAK or LDPred-funct software by 15% (SE 7%) and 14% (SE 2%),
    respectively, and was 18% (SE 3%) greater than a baseline BayesR model without
    single-nucleotide polymorphism (SNP) markers grouped into minor allele frequency–linkage
    disequilibrium (MAF-LD) annotation categories. For height, the prediction accuracy
    R2 was 47% in a UK Biobank holdout sample, which was 76% of the estimated h2SNP.
    We then extend our GMRM prediction model to provide mixed-linear model association
    (MLMA) SNP marker estimates for genome-wide association (GWAS) discovery, which
    increased the independent loci detected to 16,162 in unrelated UK Biobank individuals,
    compared to 10,550 from BoltLMM and 10,095 from Regenie, a 62 and 65% increase,
    respectively. The average χ2 value of the leading markers increased by 15.24 (SE
    0.41) for every 1% increase in prediction accuracy gained over a baseline BayesR
    model across the traits. Thus, we show that modeling genetic associations accounting
    for MAF and LD differences among SNP markers, and incorporating prior knowledge
    of genomic function, is important for both genomic prediction and discovery in
    large-scale individual-level studies.
acknowledgement: This project was funded by Swiss National Science Foundation Eccellenza
  Grant PCEGP3-181181(toM.R.R.) and by core funding from the Institute of Science
  and Technology Austria. P.M.V. acknowledges funding from the Australian National
  Health and Medical Research Council (1113400) and the Australian Research Council
  (FL180100072). K.L. and R.M. were supported by the Estonian Research Council Grant
  PRG687. Estonian Biobank computations were performed in the High-Performance Computing
  Centre, University of Tartu.
article_number: e2121279119
article_processing_charge: No
article_type: original
author:
- first_name: Etienne J.
  full_name: Orliac, Etienne J.
  last_name: Orliac
- first_name: Daniel
  full_name: Trejo Banos, Daniel
  last_name: Trejo Banos
- first_name: Sven E.
  full_name: Ojavee, Sven E.
  last_name: Ojavee
- first_name: Kristi
  full_name: Läll, Kristi
  last_name: Läll
- first_name: Reedik
  full_name: Mägi, Reedik
  last_name: Mägi
- first_name: Peter M.
  full_name: Visscher, Peter M.
  last_name: Visscher
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
citation:
  ama: Orliac EJ, Trejo Banos D, Ojavee SE, et al. Improving GWAS discovery and genomic
    prediction accuracy in biobank data. <i>Proceedings of the National Academy of
    Sciences of the United States of America</i>. 2022;119(31). doi:<a href="https://doi.org/10.1073/pnas.2121279119">10.1073/pnas.2121279119</a>
  apa: Orliac, E. J., Trejo Banos, D., Ojavee, S. E., Läll, K., Mägi, R., Visscher,
    P. M., &#38; Robinson, M. R. (2022). Improving GWAS discovery and genomic prediction
    accuracy in biobank data. <i>Proceedings of the National Academy of Sciences of
    the United States of America</i>. Proceedings of the National Academy of Sciences.
    <a href="https://doi.org/10.1073/pnas.2121279119">https://doi.org/10.1073/pnas.2121279119</a>
  chicago: Orliac, Etienne J., Daniel Trejo Banos, Sven E. Ojavee, Kristi Läll, Reedik
    Mägi, Peter M. Visscher, and Matthew Richard Robinson. “Improving GWAS Discovery
    and Genomic Prediction Accuracy in Biobank Data.” <i>Proceedings of the National
    Academy of Sciences of the United States of America</i>. Proceedings of the National
    Academy of Sciences, 2022. <a href="https://doi.org/10.1073/pnas.2121279119">https://doi.org/10.1073/pnas.2121279119</a>.
  ieee: E. J. Orliac <i>et al.</i>, “Improving GWAS discovery and genomic prediction
    accuracy in biobank data,” <i>Proceedings of the National Academy of Sciences
    of the United States of America</i>, vol. 119, no. 31. Proceedings of the National
    Academy of Sciences, 2022.
  ista: Orliac EJ, Trejo Banos D, Ojavee SE, Läll K, Mägi R, Visscher PM, Robinson
    MR. 2022. Improving GWAS discovery and genomic prediction accuracy in biobank
    data. Proceedings of the National Academy of Sciences of the United States of
    America. 119(31), e2121279119.
  mla: Orliac, Etienne J., et al. “Improving GWAS Discovery and Genomic Prediction
    Accuracy in Biobank Data.” <i>Proceedings of the National Academy of Sciences
    of the United States of America</i>, vol. 119, no. 31, e2121279119, Proceedings
    of the National Academy of Sciences, 2022, doi:<a href="https://doi.org/10.1073/pnas.2121279119">10.1073/pnas.2121279119</a>.
  short: E.J. Orliac, D. Trejo Banos, S.E. Ojavee, K. Läll, R. Mägi, P.M. Visscher,
    M.R. Robinson, Proceedings of the National Academy of Sciences of the United States
    of America 119 (2022).
date_created: 2022-08-07T22:01:56Z
date_published: 2022-07-29T00:00:00Z
date_updated: 2023-08-03T12:40:38Z
day: '29'
ddc:
- '570'
department:
- _id: MaRo
doi: 10.1073/pnas.2121279119
external_id:
  isi:
  - '000881496900003'
file:
- access_level: open_access
  checksum: b5d2024e19fbad6f85a5e384e44d0f3b
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-08T07:31:19Z
  date_updated: 2022-08-08T07:31:19Z
  file_id: '11745'
  file_name: 2022_PNAS_Orliac.pdf
  file_size: 1001164
  relation: main_file
  success: 1
file_date_updated: 2022-08-08T07:31:19Z
has_accepted_license: '1'
intvolume: '       119'
isi: 1
issue: '31'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '07'
oa: 1
oa_version: Published Version
publication: Proceedings of the National Academy of Sciences of the United States
  of America
publication_identifier:
  eissn:
  - 1091-6490
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
related_material:
  record:
  - id: '13064'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Improving GWAS discovery and genomic prediction accuracy in biobank data
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 119
year: '2022'
...
---
_id: '11734'
abstract:
- lang: eng
  text: Mineral nutrition is one of the key environmental factors determining plant
    development and growth. Nitrate is the major form of macronutrient nitrogen that
    plants take up from the soil. Fluctuating availability or deficiency of this element
    severely limits plant growth and negatively affects crop production in the agricultural
    system. To cope with the heterogeneity of nitrate distribution in soil, plants
    evolved a complex regulatory mechanism that allows rapid adjustment of physiological
    and developmental processes to the status of this nutrient. The root, as a major
    exploitation organ that controls the uptake of nitrate to the plant body, acts
    as a regulatory hub that, according to nitrate availability, coordinates the growth
    and development of other plant organs. Here, we identified a regulatory framework,
    where cytokinin response factors (CRFs) play a central role as a molecular readout
    of the nitrate status in roots to guide shoot adaptive developmental response.
    We show that nitrate-driven activation of NLP7, a master regulator of nitrate
    response in plants, fine tunes biosynthesis of cytokinin in roots and its translocation
    to shoots where it enhances expression of CRFs. CRFs, through direct transcriptional
    regulation of PIN auxin transporters, promote the flow of auxin and thereby stimulate
    the development of shoot organs.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
acknowledgement: "We acknowledge Hana Semeradova, Juan Carlos Montesinos, Nicola Cavallari,
  Marc¸al Gallem\x03ı, Kaori Tabata, Andrej Hurn\x03y, and Sascha Waidmann for sharing
  materials; and Marina Borges Osorio for critical reading of the manuscript. Work
  in the E. Benkova laboratory was supported by the Austrian Science Fund (FWF01_I1774S)
  to K.O., R.A., and E. Benkova. We acknowledge the Bioimaging Facility and Life Science
  Facilities of the Institute of Science\r\nand Technology Austria. We give sincere
  thanks to Hana Martınkova and Petra Amakorova for their help with cytokinin analyses.
  This work was funded by the Czech Science Foundation (Project No. 19-00973S)."
article_number: e2122460119
article_processing_charge: No
article_type: original
author:
- first_name: Rashed
  full_name: Abualia, Rashed
  id: 4827E134-F248-11E8-B48F-1D18A9856A87
  last_name: Abualia
  orcid: 0000-0002-9357-9415
- first_name: Krisztina
  full_name: Ötvös, Krisztina
  id: 29B901B0-F248-11E8-B48F-1D18A9856A87
  last_name: Ötvös
  orcid: 0000-0002-5503-4983
- first_name: Ondřej
  full_name: Novák, Ondřej
  last_name: Novák
- first_name: Eleonore
  full_name: Bouguyon, Eleonore
  last_name: Bouguyon
- first_name: Kevin
  full_name: Domanegg, Kevin
  id: a24c7829-16e8-11ed-8527-c4d36ffb7539
  last_name: Domanegg
  orcid: 0000-0002-1215-4264
- first_name: Anne
  full_name: Krapp, Anne
  last_name: Krapp
- first_name: Philip
  full_name: Nacry, Philip
  last_name: Nacry
- first_name: Alain
  full_name: Gojon, Alain
  last_name: Gojon
- first_name: Benoit
  full_name: Lacombe, Benoit
  last_name: Lacombe
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
citation:
  ama: Abualia R, Ötvös K, Novák O, et al. Molecular framework integrating nitrate
    sensing in root and auxin-guided shoot adaptive responses. <i>Proceedings of the
    National Academy of Sciences of the United States of America</i>. 2022;119(31).
    doi:<a href="https://doi.org/10.1073/pnas.2122460119">10.1073/pnas.2122460119</a>
  apa: Abualia, R., Ötvös, K., Novák, O., Bouguyon, E., Domanegg, K., Krapp, A., …
    Benková, E. (2022). Molecular framework integrating nitrate sensing in root and
    auxin-guided shoot adaptive responses. <i>Proceedings of the National Academy
    of Sciences of the United States of America</i>. Proceedings of the National Academy
    of Sciences. <a href="https://doi.org/10.1073/pnas.2122460119">https://doi.org/10.1073/pnas.2122460119</a>
  chicago: Abualia, Rashed, Krisztina Ötvös, Ondřej Novák, Eleonore Bouguyon, Kevin
    Domanegg, Anne Krapp, Philip Nacry, Alain Gojon, Benoit Lacombe, and Eva Benková.
    “Molecular Framework Integrating Nitrate Sensing in Root and Auxin-Guided Shoot
    Adaptive Responses.” <i>Proceedings of the National Academy of Sciences of the
    United States of America</i>. Proceedings of the National Academy of Sciences,
    2022. <a href="https://doi.org/10.1073/pnas.2122460119">https://doi.org/10.1073/pnas.2122460119</a>.
  ieee: R. Abualia <i>et al.</i>, “Molecular framework integrating nitrate sensing
    in root and auxin-guided shoot adaptive responses,” <i>Proceedings of the National
    Academy of Sciences of the United States of America</i>, vol. 119, no. 31. Proceedings
    of the National Academy of Sciences, 2022.
  ista: Abualia R, Ötvös K, Novák O, Bouguyon E, Domanegg K, Krapp A, Nacry P, Gojon
    A, Lacombe B, Benková E. 2022. Molecular framework integrating nitrate sensing
    in root and auxin-guided shoot adaptive responses. Proceedings of the National
    Academy of Sciences of the United States of America. 119(31), e2122460119.
  mla: Abualia, Rashed, et al. “Molecular Framework Integrating Nitrate Sensing in
    Root and Auxin-Guided Shoot Adaptive Responses.” <i>Proceedings of the National
    Academy of Sciences of the United States of America</i>, vol. 119, no. 31, e2122460119,
    Proceedings of the National Academy of Sciences, 2022, doi:<a href="https://doi.org/10.1073/pnas.2122460119">10.1073/pnas.2122460119</a>.
  short: R. Abualia, K. Ötvös, O. Novák, E. Bouguyon, K. Domanegg, A. Krapp, P. Nacry,
    A. Gojon, B. Lacombe, E. Benková, Proceedings of the National Academy of Sciences
    of the United States of America 119 (2022).
date_created: 2022-08-07T22:01:57Z
date_published: 2022-07-25T00:00:00Z
date_updated: 2023-08-03T12:39:29Z
day: '25'
ddc:
- '570'
department:
- _id: EvBe
doi: 10.1073/pnas.2122460119
external_id:
  isi:
  - '000881496900007'
  pmid:
  - '35878040'
file:
- access_level: open_access
  checksum: 6e97dedc281247fc3fe238a209f14af0
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-08T07:09:58Z
  date_updated: 2022-08-08T07:09:58Z
  file_id: '11744'
  file_name: 2022_PNAS_Abualia.pdf
  file_size: 3092330
  relation: main_file
  success: 1
file_date_updated: 2022-08-08T07:09:58Z
has_accepted_license: '1'
intvolume: '       119'
isi: 1
issue: '31'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2542D156-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I 1774-B16
  name: Hormone cross-talk drives nutrient dependent plant development
publication: Proceedings of the National Academy of Sciences of the United States
  of America
publication_identifier:
  eissn:
  - 1091-6490
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Molecular framework integrating nitrate sensing in root and auxin-guided shoot
  adaptive responses
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 119
year: '2022'
...
---
_id: '11735'
abstract:
- lang: eng
  text: "Interlocking puzzles are intriguing geometric games where the puzzle pieces
    are held together based on their geometric arrangement, preventing the puzzle
    from falling apart. High-level-of-difficulty, or simply high-level, interlocking
    puzzles are a subclass of interlocking puzzles that require multiple moves to
    take out the first subassembly from the puzzle. Solving a high-level interlocking
    puzzle is a challenging task since one has to explore many different configurations
    of the puzzle pieces until reaching a configuration where the first subassembly
    can be taken out. Designing a high-level interlocking puzzle with a user-specified
    level of difficulty is even harder since the puzzle pieces have to be interlocking
    in all the configurations before the first subassembly is taken out.\r\n\r\nIn
    this paper, we present a computational approach to design high-level interlocking
    puzzles. The core idea is to represent all possible configurations of an interlocking
    puzzle as well as transitions among these configurations using a rooted, undirected
    graph called a disassembly graph and leverage this graph to find a disassembly
    plan that requires a minimal number of moves to take out the first subassembly
    from the puzzle. At the design stage, our algorithm iteratively constructs the
    geometry of each puzzle piece to expand the disassembly graph incrementally, aiming
    to achieve a user-specified level of difficulty. We show that our approach allows
    efficient generation of high-level interlocking puzzles of various shape complexities,
    including new solutions not attainable by state-of-the-art approaches."
acknowledgement: "We thank the reviewers for the valuable comments, David Gontier
  for sharing the source code of the baseline design approach, Christian Hafner for
  proofreading the paper, Keenan Crane for the 3D model of Cow, and Thingiverse for
  the 3D models of Moai and Owl. This work was supported by the SUTD Start-up Research
  Grant (Number: SRG ISTD 2019 148), the Swiss National Science Foundation (NCCR Digital
  Fabrication Agreement #51NF40-141853), and\r\nthe European Research Council (ERC)
  under the European Union’s Horizon 2020 research and innovation programme (Grant
  Agreement No 715767 – MATERIALIZABLE)."
article_number: '150'
article_processing_charge: No
article_type: original
author:
- first_name: Rulin
  full_name: Chen, Rulin
  last_name: Chen
- first_name: Ziqi
  full_name: Wang, Ziqi
  last_name: Wang
- first_name: Peng
  full_name: Song, Peng
  last_name: Song
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
citation:
  ama: Chen R, Wang Z, Song P, Bickel B. Computational design of high-level interlocking
    puzzles. <i>ACM Transactions on Graphics</i>. 2022;41(4). doi:<a href="https://doi.org/10.1145/3528223.3530071">10.1145/3528223.3530071</a>
  apa: Chen, R., Wang, Z., Song, P., &#38; Bickel, B. (2022). Computational design
    of high-level interlocking puzzles. <i>ACM Transactions on Graphics</i>. Association
    for Computing Machinery. <a href="https://doi.org/10.1145/3528223.3530071">https://doi.org/10.1145/3528223.3530071</a>
  chicago: Chen, Rulin, Ziqi Wang, Peng Song, and Bernd Bickel. “Computational Design
    of High-Level Interlocking Puzzles.” <i>ACM Transactions on Graphics</i>. Association
    for Computing Machinery, 2022. <a href="https://doi.org/10.1145/3528223.3530071">https://doi.org/10.1145/3528223.3530071</a>.
  ieee: R. Chen, Z. Wang, P. Song, and B. Bickel, “Computational design of high-level
    interlocking puzzles,” <i>ACM Transactions on Graphics</i>, vol. 41, no. 4. Association
    for Computing Machinery, 2022.
  ista: Chen R, Wang Z, Song P, Bickel B. 2022. Computational design of high-level
    interlocking puzzles. ACM Transactions on Graphics. 41(4), 150.
  mla: Chen, Rulin, et al. “Computational Design of High-Level Interlocking Puzzles.”
    <i>ACM Transactions on Graphics</i>, vol. 41, no. 4, 150, Association for Computing
    Machinery, 2022, doi:<a href="https://doi.org/10.1145/3528223.3530071">10.1145/3528223.3530071</a>.
  short: R. Chen, Z. Wang, P. Song, B. Bickel, ACM Transactions on Graphics 41 (2022).
date_created: 2022-08-07T22:01:57Z
date_published: 2022-07-22T00:00:00Z
date_updated: 2023-08-03T13:21:22Z
day: '22'
ddc:
- '000'
department:
- _id: BeBi
doi: 10.1145/3528223.3530071
ec_funded: 1
external_id:
  isi:
  - '000830989200018'
file:
- access_level: open_access
  checksum: 0b51651be45b1b33f2072bd5d2686c69
  content_type: application/pdf
  creator: bbickel
  date_created: 2022-08-28T07:56:19Z
  date_updated: 2022-08-28T07:56:19Z
  file_id: '11992'
  file_name: Chen-2022-High-LevelPuzzle_authorVersion.pdf
  file_size: 16896871
  relation: main_file
  success: 1
file_date_updated: 2022-08-28T07:56:19Z
has_accepted_license: '1'
intvolume: '        41'
isi: 1
issue: '4'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
project:
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '715767'
  name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
    Modeling'
publication: ACM Transactions on Graphics
publication_identifier:
  eissn:
  - 1557-7368
  issn:
  - 0730-0301
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA website
    relation: press_release
    url: https://ista.ac.at/en/news/unlocking-interlocking-riddles/
scopus_import: '1'
status: public
title: Computational design of high-level interlocking puzzles
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 41
year: '2022'
...
---
_id: '11736'
abstract:
- lang: eng
  text: "This paper introduces a methodology for inverse-modeling of yarn-level mechanics
    of cloth, based on the mechanical response of fabrics in the real world. We compiled
    a database from physical tests of several different knitted fabrics used in the
    textile industry. These data span different types of complex knit patterns, yarn
    compositions, and fabric finishes, and the results demonstrate diverse physical
    properties like stiffness, nonlinearity, and anisotropy.\r\n\r\nWe then develop
    a system for approximating these mechanical responses with yarn-level cloth simulation.
    To do so, we introduce an efficient pipeline for converting between fabric-level
    data and yarn-level simulation, including a novel swatch-level approximation for
    speeding up computation, and some small-but-necessary extensions to yarn-level
    models used in computer graphics. The dataset used for this paper can be found
    at http://mslab.es/projects/YarnLevelFabrics."
acknowledged_ssus:
- _id: ScienComp
acknowledgement: We wish to thank the anonymous reviewers for their helpful comments.
  To develop this project, we were helped by many people both at Under Armour (Clay
  Dean, Randall Harward, Kyle Blakely, Craig Simile, Michael Seiz, Brooke Malone,
  Brittainy McFarland, Emilie Phan, Lindsey Kern, Courtney Oswald, Haley Barkley,
  Bob Chin, Adam Bayer, Connie Kwok, Marielle Newman, Nick Pence, Allison Hicks, Allison
  White, Candace Rubenstein, Jeremy Stangland, Fred Fagergren, Michael Mazzoleni,
  Nathaniel Berry, Manuel Frank) and SEDDI (Gabriel Cirio, Alejandro Rodríguez, Sofía
  Dominguez, Alicia Nicas, Elena Garcés, Daniel Rodríguez, David Pascual, Manuel Godoy,
  Sergio Suja, Sergio Ruiz, Roberto Condori, Alberto Martín, Graham Sullivan). We
  also thank the members of the Visual Computing Group at IST Austria and the Multimodal
  Simulation Lab at URJC for their feedback. This research was supported by the Scientific
  Service Units (SSU) of IST Austria through resources provided by Scientific Computing,
  and it was funded in part by the European Research Council (ERC Consolidator Grant
  772738 TouchDesign).
article_number: '65'
article_processing_charge: No
article_type: original
author:
- first_name: Georg
  full_name: Sperl, Georg
  id: 4DD40360-F248-11E8-B48F-1D18A9856A87
  last_name: Sperl
- first_name: Rosa M.
  full_name: Sánchez-Banderas, Rosa M.
  last_name: Sánchez-Banderas
- first_name: Manwen
  full_name: Li, Manwen
  last_name: Li
- first_name: Christopher J
  full_name: Wojtan, Christopher J
  id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
  last_name: Wojtan
  orcid: 0000-0001-6646-5546
- first_name: Miguel A.
  full_name: Otaduy, Miguel A.
  last_name: Otaduy
citation:
  ama: Sperl G, Sánchez-Banderas RM, Li M, Wojtan C, Otaduy MA. Estimation of yarn-level
    simulation models for production fabrics. <i>ACM Transactions on Graphics</i>.
    2022;41(4). doi:<a href="https://doi.org/10.1145/3528223.3530167">10.1145/3528223.3530167</a>
  apa: Sperl, G., Sánchez-Banderas, R. M., Li, M., Wojtan, C., &#38; Otaduy, M. A.
    (2022). Estimation of yarn-level simulation models for production fabrics. <i>ACM
    Transactions on Graphics</i>. Association for Computing Machinery. <a href="https://doi.org/10.1145/3528223.3530167">https://doi.org/10.1145/3528223.3530167</a>
  chicago: Sperl, Georg, Rosa M. Sánchez-Banderas, Manwen Li, Chris Wojtan, and Miguel
    A. Otaduy. “Estimation of Yarn-Level Simulation Models for Production Fabrics.”
    <i>ACM Transactions on Graphics</i>. Association for Computing Machinery, 2022.
    <a href="https://doi.org/10.1145/3528223.3530167">https://doi.org/10.1145/3528223.3530167</a>.
  ieee: G. Sperl, R. M. Sánchez-Banderas, M. Li, C. Wojtan, and M. A. Otaduy, “Estimation
    of yarn-level simulation models for production fabrics,” <i>ACM Transactions on
    Graphics</i>, vol. 41, no. 4. Association for Computing Machinery, 2022.
  ista: Sperl G, Sánchez-Banderas RM, Li M, Wojtan C, Otaduy MA. 2022. Estimation
    of yarn-level simulation models for production fabrics. ACM Transactions on Graphics.
    41(4), 65.
  mla: Sperl, Georg, et al. “Estimation of Yarn-Level Simulation Models for Production
    Fabrics.” <i>ACM Transactions on Graphics</i>, vol. 41, no. 4, 65, Association
    for Computing Machinery, 2022, doi:<a href="https://doi.org/10.1145/3528223.3530167">10.1145/3528223.3530167</a>.
  short: G. Sperl, R.M. Sánchez-Banderas, M. Li, C. Wojtan, M.A. Otaduy, ACM Transactions
    on Graphics 41 (2022).
date_created: 2022-08-07T22:01:58Z
date_published: 2022-07-22T00:00:00Z
date_updated: 2023-08-03T12:38:30Z
day: '22'
department:
- _id: ChWo
doi: 10.1145/3528223.3530167
external_id:
  isi:
  - '000830989200114'
intvolume: '        41'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1145/3528223.3530167
month: '07'
oa: 1
oa_version: Published Version
publication: ACM Transactions on Graphics
publication_identifier:
  eissn:
  - 1557-7368
  issn:
  - 0730-0301
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
  link:
  - description: News on the ISTA website
    relation: press_release
    url: https://ista.ac.at/en/news/digital-yarn-real-socks/
  record:
  - id: '12358'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Estimation of yarn-level simulation models for production fabrics
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 41
year: '2022'
...
---
_id: '11737'
abstract:
- lang: eng
  text: Spin-orbit coupling in thin HgTe quantum wells results in a relativistic-like
    electron band structure, making it a versatile solid state platform to observe
    and control nontrivial electrodynamic phenomena. Here we report an observation
    of universal terahertz (THz) transparency determined by fine-structure constant
    α≈1/137 in 6.5-nm-thick HgTe layer, close to the critical thickness separating
    phases with topologically different electronic band structure. Using THz spectroscopy
    in a magnetic field we obtain direct evidence of asymmetric spin splitting of
    the Dirac cone. This particle-hole asymmetry facilitates optical control of edge
    spin currents in the quantum wells.
acknowledgement: This work was supported by the Austrian Science Funds (W 1243, I
  3456-N27, I 5539-N).
article_number: '045302'
article_processing_charge: No
article_type: original
author:
- first_name: Uladzislau
  full_name: Dziom, Uladzislau
  id: 6A9A37C2-8C5C-11E9-AE53-F2FDE5697425
  last_name: Dziom
  orcid: 0000-0002-1648-0999
- first_name: A.
  full_name: Shuvaev, A.
  last_name: Shuvaev
- first_name: J.
  full_name: Gospodarič, J.
  last_name: Gospodarič
- first_name: E. G.
  full_name: Novik, E. G.
  last_name: Novik
- first_name: A. A.
  full_name: Dobretsova, A. A.
  last_name: Dobretsova
- first_name: N. N.
  full_name: Mikhailov, N. N.
  last_name: Mikhailov
- first_name: Z. D.
  full_name: Kvon, Z. D.
  last_name: Kvon
- first_name: Zhanybek
  full_name: Alpichshev, Zhanybek
  id: 45E67A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Alpichshev
  orcid: 0000-0002-7183-5203
- first_name: A.
  full_name: Pimenov, A.
  last_name: Pimenov
citation:
  ama: Dziom U, Shuvaev A, Gospodarič J, et al. Universal transparency and asymmetric
    spin splitting near the Dirac point in HgTe quantum wells. <i>Physical Review
    B</i>. 2022;106(4). doi:<a href="https://doi.org/10.1103/PhysRevB.106.045302">10.1103/PhysRevB.106.045302</a>
  apa: Dziom, U., Shuvaev, A., Gospodarič, J., Novik, E. G., Dobretsova, A. A., Mikhailov,
    N. N., … Pimenov, A. (2022). Universal transparency and asymmetric spin splitting
    near the Dirac point in HgTe quantum wells. <i>Physical Review B</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevB.106.045302">https://doi.org/10.1103/PhysRevB.106.045302</a>
  chicago: Dziom, Uladzislau, A. Shuvaev, J. Gospodarič, E. G. Novik, A. A. Dobretsova,
    N. N. Mikhailov, Z. D. Kvon, Zhanybek Alpichshev, and A. Pimenov. “Universal Transparency
    and Asymmetric Spin Splitting near the Dirac Point in HgTe Quantum Wells.” <i>Physical
    Review B</i>. American Physical Society, 2022. <a href="https://doi.org/10.1103/PhysRevB.106.045302">https://doi.org/10.1103/PhysRevB.106.045302</a>.
  ieee: U. Dziom <i>et al.</i>, “Universal transparency and asymmetric spin splitting
    near the Dirac point in HgTe quantum wells,” <i>Physical Review B</i>, vol. 106,
    no. 4. American Physical Society, 2022.
  ista: Dziom U, Shuvaev A, Gospodarič J, Novik EG, Dobretsova AA, Mikhailov NN, Kvon
    ZD, Alpichshev Z, Pimenov A. 2022. Universal transparency and asymmetric spin
    splitting near the Dirac point in HgTe quantum wells. Physical Review B. 106(4),
    045302.
  mla: Dziom, Uladzislau, et al. “Universal Transparency and Asymmetric Spin Splitting
    near the Dirac Point in HgTe Quantum Wells.” <i>Physical Review B</i>, vol. 106,
    no. 4, 045302, American Physical Society, 2022, doi:<a href="https://doi.org/10.1103/PhysRevB.106.045302">10.1103/PhysRevB.106.045302</a>.
  short: U. Dziom, A. Shuvaev, J. Gospodarič, E.G. Novik, A.A. Dobretsova, N.N. Mikhailov,
    Z.D. Kvon, Z. Alpichshev, A. Pimenov, Physical Review B 106 (2022).
date_created: 2022-08-07T22:01:58Z
date_published: 2022-07-15T00:00:00Z
date_updated: 2023-08-03T12:38:57Z
day: '15'
ddc:
- '530'
department:
- _id: ZhAl
doi: 10.1103/PhysRevB.106.045302
external_id:
  isi:
  - '000834349200010'
file:
- access_level: open_access
  checksum: 115aff9e0cde2f806cb26953d7262791
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-08T06:58:22Z
  date_updated: 2022-08-08T06:58:22Z
  file_id: '11743'
  file_name: 2022_PhysRevB_Dziom.pdf
  file_size: 774455
  relation: main_file
  success: 1
file_date_updated: 2022-08-08T06:58:22Z
has_accepted_license: '1'
intvolume: '       106'
isi: 1
issue: '4'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Universal transparency and asymmetric spin splitting near the Dirac point in
  HgTe quantum wells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 106
year: '2022'
...
---
_id: '11739'
abstract:
- lang: eng
  text: We consider finite-volume approximations of Fokker--Planck equations on bounded
    convex domains in $\mathbb{R}^d$ and study the corresponding gradient flow structures.
    We reprove the convergence of the discrete to continuous Fokker--Planck equation
    via the method of evolutionary $\Gamma$-convergence, i.e., we pass to the limit
    at the level of the gradient flow structures, generalizing the one-dimensional
    result obtained by Disser and Liero. The proof is of variational nature and relies
    on a Mosco convergence result for functionals in the discrete-to-continuum limit
    that is of independent interest. Our results apply to arbitrary regular meshes,
    even though the associated discrete transport distances may fail to converge to
    the Wasserstein distance in this generality.
acknowledgement: This work was supported by the European Research Council (ERC) under
  the European Union's Horizon 2020 Research and Innovation Programme grant 716117
  and by the AustrianScience Fund (FWF) through grants F65 and W1245.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Dominik L
  full_name: Forkert, Dominik L
  id: 35C79D68-F248-11E8-B48F-1D18A9856A87
  last_name: Forkert
- first_name: Jan
  full_name: Maas, Jan
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
- first_name: Lorenzo
  full_name: Portinale, Lorenzo
  id: 30AD2CBC-F248-11E8-B48F-1D18A9856A87
  last_name: Portinale
citation:
  ama: Forkert DL, Maas J, Portinale L. Evolutionary $\Gamma$-convergence of entropic
    gradient flow structures for Fokker-Planck equations in multiple dimensions. <i>SIAM
    Journal on Mathematical Analysis</i>. 2022;54(4):4297-4333. doi:<a href="https://doi.org/10.1137/21M1410968">10.1137/21M1410968</a>
  apa: Forkert, D. L., Maas, J., &#38; Portinale, L. (2022). Evolutionary $\Gamma$-convergence
    of entropic gradient flow structures for Fokker-Planck equations in multiple dimensions.
    <i>SIAM Journal on Mathematical Analysis</i>. Society for Industrial and Applied
    Mathematics. <a href="https://doi.org/10.1137/21M1410968">https://doi.org/10.1137/21M1410968</a>
  chicago: Forkert, Dominik L, Jan Maas, and Lorenzo Portinale. “Evolutionary $\Gamma$-Convergence
    of Entropic Gradient Flow Structures for Fokker-Planck Equations in Multiple Dimensions.”
    <i>SIAM Journal on Mathematical Analysis</i>. Society for Industrial and Applied
    Mathematics, 2022. <a href="https://doi.org/10.1137/21M1410968">https://doi.org/10.1137/21M1410968</a>.
  ieee: D. L. Forkert, J. Maas, and L. Portinale, “Evolutionary $\Gamma$-convergence
    of entropic gradient flow structures for Fokker-Planck equations in multiple dimensions,”
    <i>SIAM Journal on Mathematical Analysis</i>, vol. 54, no. 4. Society for Industrial
    and Applied Mathematics, pp. 4297–4333, 2022.
  ista: Forkert DL, Maas J, Portinale L. 2022. Evolutionary $\Gamma$-convergence of
    entropic gradient flow structures for Fokker-Planck equations in multiple dimensions.
    SIAM Journal on Mathematical Analysis. 54(4), 4297–4333.
  mla: Forkert, Dominik L., et al. “Evolutionary $\Gamma$-Convergence of Entropic
    Gradient Flow Structures for Fokker-Planck Equations in Multiple Dimensions.”
    <i>SIAM Journal on Mathematical Analysis</i>, vol. 54, no. 4, Society for Industrial
    and Applied Mathematics, 2022, pp. 4297–333, doi:<a href="https://doi.org/10.1137/21M1410968">10.1137/21M1410968</a>.
  short: D.L. Forkert, J. Maas, L. Portinale, SIAM Journal on Mathematical Analysis
    54 (2022) 4297–4333.
date_created: 2022-08-07T22:01:59Z
date_published: 2022-07-18T00:00:00Z
date_updated: 2023-08-03T12:37:21Z
day: '18'
department:
- _id: JaMa
doi: 10.1137/21M1410968
ec_funded: 1
external_id:
  arxiv:
  - '2008.10962'
  isi:
  - '000889274600001'
intvolume: '        54'
isi: 1
issue: '4'
keyword:
- Fokker--Planck equation
- gradient flow
- evolutionary $\Gamma$-convergence
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2008.10962'
month: '07'
oa: 1
oa_version: Preprint
page: 4297-4333
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
- _id: 260788DE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  name: Dissipation and Dispersion in Nonlinear Partial Differential Equations
publication: SIAM Journal on Mathematical Analysis
publication_identifier:
  eissn:
  - 1095-7154
  issn:
  - 0036-1410
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
related_material:
  record:
  - id: '10022'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Evolutionary $\Gamma$-convergence of entropic gradient flow structures for
  Fokker-Planck equations in multiple dimensions
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 54
year: '2022'
...
---
_id: '11740'
abstract:
- lang: eng
  text: "We consider a generalised model of a random simplicial complex, which arises
    from a random hypergraph. Our model is generated by taking the downward-closure
    of a non-uniform binomial random hypergraph, in which for each k, each set of
    k+1 vertices forms an edge with some probability pk independently. As a special
    case, this contains an extensively studied model of a (uniform) random simplicial
    complex, introduced by Meshulam and Wallach [Random Structures & Algorithms 34
    (2009), no. 3, pp. 408–417].\r\nWe consider a higher-dimensional notion of connectedness
    on this new model according to the vanishing of cohomology groups over an arbitrary
    abelian group R. We prove that this notion of connectedness displays a phase transition
    and determine the threshold. We also prove a hitting time result for a natural
    process interpretation, in which simplices and their downward-closure are added
    one by one. In addition, we determine the asymptotic behaviour of cohomology groups
    inside the critical window around the time of the phase transition."
acknowledgement: 'Supported by Austrian Science Fund (FWF): I3747, W1230.'
article_number: P3.27
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Oliver
  full_name: Cooley, Oliver
  id: 43f4ddd0-a46b-11ec-8df6-ef3703bd721d
  last_name: Cooley
- first_name: Nicola
  full_name: Del Giudice, Nicola
  last_name: Del Giudice
- first_name: Mihyun
  full_name: Kang, Mihyun
  last_name: Kang
- first_name: Philipp
  full_name: Sprüssel, Philipp
  last_name: Sprüssel
citation:
  ama: Cooley O, Del Giudice N, Kang M, Sprüssel P. Phase transition in cohomology
    groups of non-uniform random simplicial complexes. <i>Electronic Journal of Combinatorics</i>.
    2022;29(3). doi:<a href="https://doi.org/10.37236/10607">10.37236/10607</a>
  apa: Cooley, O., Del Giudice, N., Kang, M., &#38; Sprüssel, P. (2022). Phase transition
    in cohomology groups of non-uniform random simplicial complexes. <i>Electronic
    Journal of Combinatorics</i>. Electronic Journal of Combinatorics. <a href="https://doi.org/10.37236/10607">https://doi.org/10.37236/10607</a>
  chicago: Cooley, Oliver, Nicola Del Giudice, Mihyun Kang, and Philipp Sprüssel.
    “Phase Transition in Cohomology Groups of Non-Uniform Random Simplicial Complexes.”
    <i>Electronic Journal of Combinatorics</i>. Electronic Journal of Combinatorics,
    2022. <a href="https://doi.org/10.37236/10607">https://doi.org/10.37236/10607</a>.
  ieee: O. Cooley, N. Del Giudice, M. Kang, and P. Sprüssel, “Phase transition in
    cohomology groups of non-uniform random simplicial complexes,” <i>Electronic Journal
    of Combinatorics</i>, vol. 29, no. 3. Electronic Journal of Combinatorics, 2022.
  ista: Cooley O, Del Giudice N, Kang M, Sprüssel P. 2022. Phase transition in cohomology
    groups of non-uniform random simplicial complexes. Electronic Journal of Combinatorics.
    29(3), P3.27.
  mla: Cooley, Oliver, et al. “Phase Transition in Cohomology Groups of Non-Uniform
    Random Simplicial Complexes.” <i>Electronic Journal of Combinatorics</i>, vol.
    29, no. 3, P3.27, Electronic Journal of Combinatorics, 2022, doi:<a href="https://doi.org/10.37236/10607">10.37236/10607</a>.
  short: O. Cooley, N. Del Giudice, M. Kang, P. Sprüssel, Electronic Journal of Combinatorics
    29 (2022).
date_created: 2022-08-07T22:01:59Z
date_published: 2022-07-29T00:00:00Z
date_updated: 2023-08-03T12:37:54Z
day: '29'
ddc:
- '510'
department:
- _id: MaKw
doi: 10.37236/10607
external_id:
  arxiv:
  - '2005.07103'
  isi:
  - '000836200300001'
file:
- access_level: open_access
  checksum: 057c676dcee70236aa234d4ce6138c69
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-08T06:28:52Z
  date_updated: 2022-08-08T06:28:52Z
  file_id: '11742'
  file_name: 2022_ElecJournCombinatorics_Cooley.pdf
  file_size: 1768663
  relation: main_file
  success: 1
file_date_updated: 2022-08-08T06:28:52Z
has_accepted_license: '1'
intvolume: '        29'
isi: 1
issue: '3'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nd/4.0/
month: '07'
oa: 1
oa_version: Published Version
publication: Electronic Journal of Combinatorics
publication_identifier:
  eissn:
  - 1077-8926
publication_status: published
publisher: Electronic Journal of Combinatorics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Phase transition in cohomology groups of non-uniform random simplicial complexes
tmp:
  image: /image/cc_by_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nd/4.0/legalcode
  name: Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)
  short: CC BY-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 29
year: '2022'
...
---
_id: '11775'
abstract:
- lang: eng
  text: 'Quantitative monitoring can be universal and approximate: For every finite
    sequence of observations, the specification provides a value and the monitor outputs
    a best-effort approximation of it. The quality of the approximation may depend
    on the resources that are available to the monitor. By taking to the limit the
    sequences of specification values and monitor outputs, we obtain precision-resource
    trade-offs also for limit monitoring. This paper provides a formal framework for
    studying such trade-offs using an abstract interpretation for monitors: For each
    natural number n, the aggregate semantics of a monitor at time n is an equivalence
    relation over all sequences of at most n observations so that two equivalent sequences
    are indistinguishable to the monitor and thus mapped to the same output. This
    abstract interpretation of quantitative monitors allows us to measure the number
    of equivalence classes (or “resource use”) that is necessary for a certain precision
    up to a certain time, or at any time. Our framework offers several insights. For
    example, we identify a family of specifications for which any resource-optimal
    exact limit monitor is independent of any error permitted over finite traces.
    Moreover, we present a specification for which any resource-optimal approximate
    limit monitor does not minimize its resource use at any time. '
acknowledgement: We thank the anonymous reviewers for their helpful comments. This
  work was supported in part by the ERC-2020-AdG 101020093.
alternative_title:
- LNCS
article_processing_charge: Yes
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Nicolas Adrien
  full_name: Mazzocchi, Nicolas Adrien
  id: b26baa86-3308-11ec-87b0-8990f34baa85
  last_name: Mazzocchi
- first_name: Naci E
  full_name: Sarac, Naci E
  id: 8C6B42F8-C8E6-11E9-A03A-F2DCE5697425
  last_name: Sarac
citation:
  ama: 'Henzinger TA, Mazzocchi NA, Sarac NE. Abstract monitors for quantitative specifications.
    In: <i>22nd International Conference on Runtime Verification</i>. Vol 13498. Springer
    Nature; 2022:200-220. doi:<a href="https://doi.org/10.1007/978-3-031-17196-3_11">10.1007/978-3-031-17196-3_11</a>'
  apa: 'Henzinger, T. A., Mazzocchi, N. A., &#38; Sarac, N. E. (2022). Abstract monitors
    for quantitative specifications. In <i>22nd International Conference on Runtime
    Verification</i> (Vol. 13498, pp. 200–220). Tbilisi, Georgia: Springer Nature.
    <a href="https://doi.org/10.1007/978-3-031-17196-3_11">https://doi.org/10.1007/978-3-031-17196-3_11</a>'
  chicago: Henzinger, Thomas A, Nicolas Adrien Mazzocchi, and Naci E Sarac. “Abstract
    Monitors for Quantitative Specifications.” In <i>22nd International Conference
    on Runtime Verification</i>, 13498:200–220. Springer Nature, 2022. <a href="https://doi.org/10.1007/978-3-031-17196-3_11">https://doi.org/10.1007/978-3-031-17196-3_11</a>.
  ieee: T. A. Henzinger, N. A. Mazzocchi, and N. E. Sarac, “Abstract monitors for
    quantitative specifications,” in <i>22nd International Conference on Runtime Verification</i>,
    Tbilisi, Georgia, 2022, vol. 13498, pp. 200–220.
  ista: 'Henzinger TA, Mazzocchi NA, Sarac NE. 2022. Abstract monitors for quantitative
    specifications. 22nd International Conference on Runtime Verification. RV: Runtime
    Verification, LNCS, vol. 13498, 200–220.'
  mla: Henzinger, Thomas A., et al. “Abstract Monitors for Quantitative Specifications.”
    <i>22nd International Conference on Runtime Verification</i>, vol. 13498, Springer
    Nature, 2022, pp. 200–20, doi:<a href="https://doi.org/10.1007/978-3-031-17196-3_11">10.1007/978-3-031-17196-3_11</a>.
  short: T.A. Henzinger, N.A. Mazzocchi, N.E. Sarac, in:, 22nd International Conference
    on Runtime Verification, Springer Nature, 2022, pp. 200–220.
conference:
  end_date: 2022-09-30
  location: Tbilisi, Georgia
  name: 'RV: Runtime Verification'
  start_date: 2022-09-28
date_created: 2022-08-08T17:09:09Z
date_published: 2022-09-23T00:00:00Z
date_updated: 2023-08-03T13:38:46Z
day: '23'
ddc:
- '000'
department:
- _id: GradSch
- _id: ToHe
doi: 10.1007/978-3-031-17196-3_11
ec_funded: 1
external_id:
  isi:
  - '000866539700011'
file:
- access_level: open_access
  checksum: 05c7dcfbb9053a98f46441fb2eccb213
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-20T07:34:50Z
  date_updated: 2023-01-20T07:34:50Z
  file_id: '12317'
  file_name: 2022_LNCS_RV_Henzinger.pdf
  file_size: 477110
  relation: main_file
  success: 1
file_date_updated: 2023-01-20T07:34:50Z
has_accepted_license: '1'
intvolume: '     13498'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 200-220
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: 22nd International Conference on Runtime Verification
publication_identifier:
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Abstract monitors for quantitative specifications
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13498
year: '2022'
...
---
_id: '11777'
abstract:
- lang: eng
  text: "In this dissertation we study coboundary expansion of simplicial complex
    with a view of giving geometric applications.\r\nOur main novel tool is an equivariant
    version of Gromov's celebrated Topological Overlap Theorem. The equivariant topological
    overlap theorem leads to various geometric applications including a quantitative
    non-embeddability result for sufficiently thick buildings (which partially resolves
    a conjecture of Tancer and Vorwerk) and an improved lower bound on the pair-crossing
    number of (bounded degree) expander graphs. Additionally, we will give new proofs
    for several known lower bounds for geometric problems such as the number of Tverberg
    partitions or the crossing number of complete bipartite graphs.\r\nFor the aforementioned
    applications one is naturally lead to study expansion properties of joins of simplicial
    complexes. In the presence of a special certificate for expansion (as it is the
    case, e.g., for spherical buildings), the join of two expanders is an expander.
    On the flip-side, we report quite some evidence that coboundary expansion exhibits
    very non-product-like behaviour under taking joins. For instance, we exhibit infinite
    families of graphs $(G_n)_{n\\in \\mathbb{N}}$ and $(H_n)_{n\\in\\mathbb{N}}$
    whose join $G_n*H_n$ has expansion of lower order than the product of the expansion
    constant of the graphs. Moreover, we show an upper bound of $(d+1)/2^d$ on the
    normalized coboundary expansion constants for the complete multipartite complex
    $[n]^{*(d+1)}$ (under a mild divisibility condition on $n$).\r\nVia the probabilistic
    method the latter result extends to an upper bound of $(d+1)/2^d+\\varepsilon$
    on the coboundary expansion constant of the spherical building associated with
    $\\mathrm{PGL}_{d+2}(\\mathbb{F}_q)$ for any $\\varepsilon>0$ and sufficiently
    large $q=q(\\varepsilon)$. This disproves a conjecture of Lubotzky, Meshulam and
    Mozes -- in a rather strong sense.\r\nBy improving on existing lower bounds we
    make further progress towards closing the gap between the known lower and upper
    bounds on the coboundary expansion constants of $[n]^{*(d+1)}$. The best improvements
    we achieve using computer-aided proofs and flag algebras. The exact value even
    for the complete $3$-partite $2$-dimensional complex $[n]^{*3}$ remains unknown
    but we are happy to conjecture a precise value for every $n$. %Moreover, we show
    that a previously shown lower bound on the expansion constant of the spherical
    building associated with $\\mathrm{PGL}_{2}(\\mathbb{F}_q)$ is not tight.\r\nIn
    a loosely structured, last chapter of this thesis we collect further smaller observations
    related to expansion. We point out a link between discrete Morse theory and a
    technique for showing coboundary expansion, elaborate a bit on the hardness of
    computing coboundary expansion constants, propose a new criterion for coboundary
    expansion (in a very dense setting) and give one way of making the folklore result
    that expansion of links is a necessary condition for a simplicial complex to be
    an expander precise."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Pascal
  full_name: Wild, Pascal
  id: 4C20D868-F248-11E8-B48F-1D18A9856A87
  last_name: Wild
citation:
  ama: Wild P. High-dimensional expansion and crossing numbers of simplicial complexes.
    2022. doi:<a href="https://doi.org/10.15479/at:ista:11777">10.15479/at:ista:11777</a>
  apa: Wild, P. (2022). <i>High-dimensional expansion and crossing numbers of simplicial
    complexes</i>. Institute of Science and Technology. <a href="https://doi.org/10.15479/at:ista:11777">https://doi.org/10.15479/at:ista:11777</a>
  chicago: Wild, Pascal. “High-Dimensional Expansion and Crossing Numbers of Simplicial
    Complexes.” Institute of Science and Technology, 2022. <a href="https://doi.org/10.15479/at:ista:11777">https://doi.org/10.15479/at:ista:11777</a>.
  ieee: P. Wild, “High-dimensional expansion and crossing numbers of simplicial complexes,”
    Institute of Science and Technology, 2022.
  ista: Wild P. 2022. High-dimensional expansion and crossing numbers of simplicial
    complexes. Institute of Science and Technology.
  mla: Wild, Pascal. <i>High-Dimensional Expansion and Crossing Numbers of Simplicial
    Complexes</i>. Institute of Science and Technology, 2022, doi:<a href="https://doi.org/10.15479/at:ista:11777">10.15479/at:ista:11777</a>.
  short: P. Wild, High-Dimensional Expansion and Crossing Numbers of Simplicial Complexes,
    Institute of Science and Technology, 2022.
date_created: 2022-08-10T15:51:19Z
date_published: 2022-08-11T00:00:00Z
date_updated: 2023-06-22T09:56:36Z
day: '11'
ddc:
- '500'
- '516'
- '514'
degree_awarded: PhD
department:
- _id: GradSch
- _id: UlWa
doi: 10.15479/at:ista:11777
ec_funded: 1
file:
- access_level: open_access
  checksum: f5f3af1fb7c8a24b71ddc88ad7f7c5b4
  content_type: text/x-python
  creator: pwild
  date_created: 2022-08-10T15:34:04Z
  date_updated: 2022-08-10T15:34:04Z
  description: Code for computer-assisted proofs in Section 8.4.7 in Thesis
  file_id: '11780'
  file_name: flags.py
  file_size: 16828
  relation: supplementary_material
- access_level: open_access
  checksum: 1f7c12dfe3bdaa9b147e4fbc3d34e3d5
  content_type: text/x-c++src
  creator: pwild
  date_created: 2022-08-10T15:34:10Z
  date_updated: 2022-08-10T15:34:10Z
  description: Code for proof of Lemma 8.20 in Thesis
  file_id: '11781'
  file_name: lowerbound.cpp
  file_size: 12226
  relation: supplementary_material
- access_level: open_access
  checksum: 4cf81455c49e5dec3b9b2e3980137eeb
  content_type: text/x-python
  creator: pwild
  date_created: 2022-08-10T15:34:17Z
  date_updated: 2022-08-10T15:34:17Z
  description: Code for proof of Proposition 7.9 in Thesis
  file_id: '11782'
  file_name: upperbound.py
  file_size: 3240
  relation: supplementary_material
- access_level: open_access
  checksum: 4e96575b10cbe4e0d0db2045b2847774
  content_type: application/pdf
  creator: pwild
  date_created: 2022-08-11T16:08:33Z
  date_updated: 2022-08-11T16:08:33Z
  file_id: '11809'
  file_name: finalthesisPascalWildPDFA.pdf
  file_size: 5086282
  relation: main_file
  title: High-Dimensional Expansion and Crossing Numbers of Simplicial Complexes
- access_level: closed
  checksum: 92d94842a1fb6dca5808448137573b2e
  content_type: application/zip
  creator: pwild
  date_created: 2022-08-11T16:09:19Z
  date_updated: 2022-08-11T16:09:19Z
  file_id: '11810'
  file_name: ThesisSubmission.zip
  file_size: 18150068
  relation: source_file
file_date_updated: 2022-08-11T16:09:19Z
has_accepted_license: '1'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: '170'
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication_identifier:
  isbn:
  - 978-3-99078-021-3
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology
status: public
supervisor:
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
title: High-dimensional expansion and crossing numbers of simplicial complexes
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2022'
...
---
_id: '11783'
abstract:
- lang: eng
  text: We consider a gas of N bosons with interactions in the mean-field scaling
    regime. We review the proof of an asymptotic expansion of its low-energy spectrum,
    eigenstates, and dynamics, which provides corrections to Bogoliubov theory to
    all orders in 1/ N. This is based on joint works with Petrat, Pickl, Seiringer,
    and Soffer. In addition, we derive a full asymptotic expansion of the ground state
    one-body reduced density matrix.
acknowledgement: "The author thanks Nataˇsa Pavlovic, Sören Petrat, Peter Pickl, Robert
  Seiringer, and Avy Soffer for the collaboration on Refs. 1, 2 and 21. Funding from
  the European Union’s Horizon 2020 Research and Innovation Programme under Marie
  Skℓodowska-Curie Grant Agreement\r\nNo. 754411 is gratefully acknowledged."
article_number: '061102'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Lea
  full_name: Bossmann, Lea
  id: A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425
  last_name: Bossmann
  orcid: 0000-0002-6854-1343
citation:
  ama: Bossmann L. Low-energy spectrum and dynamics of the weakly interacting Bose
    gas. <i>Journal of Mathematical Physics</i>. 2022;63(6). doi:<a href="https://doi.org/10.1063/5.0089983">10.1063/5.0089983</a>
  apa: Bossmann, L. (2022). Low-energy spectrum and dynamics of the weakly interacting
    Bose gas. <i>Journal of Mathematical Physics</i>. AIP Publishing. <a href="https://doi.org/10.1063/5.0089983">https://doi.org/10.1063/5.0089983</a>
  chicago: Bossmann, Lea. “Low-Energy Spectrum and Dynamics of the Weakly Interacting
    Bose Gas.” <i>Journal of Mathematical Physics</i>. AIP Publishing, 2022. <a href="https://doi.org/10.1063/5.0089983">https://doi.org/10.1063/5.0089983</a>.
  ieee: L. Bossmann, “Low-energy spectrum and dynamics of the weakly interacting Bose
    gas,” <i>Journal of Mathematical Physics</i>, vol. 63, no. 6. AIP Publishing,
    2022.
  ista: Bossmann L. 2022. Low-energy spectrum and dynamics of the weakly interacting
    Bose gas. Journal of Mathematical Physics. 63(6), 061102.
  mla: Bossmann, Lea. “Low-Energy Spectrum and Dynamics of the Weakly Interacting
    Bose Gas.” <i>Journal of Mathematical Physics</i>, vol. 63, no. 6, 061102, AIP
    Publishing, 2022, doi:<a href="https://doi.org/10.1063/5.0089983">10.1063/5.0089983</a>.
  short: L. Bossmann, Journal of Mathematical Physics 63 (2022).
date_created: 2022-08-11T06:37:52Z
date_published: 2022-06-10T00:00:00Z
date_updated: 2023-08-03T12:46:28Z
day: '10'
ddc:
- '530'
department:
- _id: RoSe
doi: 10.1063/5.0089983
ec_funded: 1
external_id:
  arxiv:
  - '2203.00730'
  isi:
  - '000809648100002'
file:
- access_level: open_access
  checksum: d0d32c338c1896680174be88c70968fa
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-11T07:03:02Z
  date_updated: 2022-08-11T07:03:02Z
  file_id: '11784'
  file_name: 2022_JourMathPhysics_Bossmann.pdf
  file_size: 5957888
  relation: main_file
  success: 1
file_date_updated: 2022-08-11T07:03:02Z
has_accepted_license: '1'
intvolume: '        63'
isi: 1
issue: '6'
keyword:
- Mathematical Physics
- Statistical and Nonlinear Physics
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Journal of Mathematical Physics
publication_identifier:
  eissn:
  - 1089-7658
  issn:
  - 0022-2488
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Low-energy spectrum and dynamics of the weakly interacting Bose gas
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 63
year: '2022'
...
---
_id: '7791'
abstract:
- lang: eng
  text: Extending a result of Milena Radnovic and Serge Tabachnikov, we establish
    conditionsfor two different non-symmetric norms to define the same billiard reflection
    law.
acknowledgement: AA was supported by European Research Council (ERC) under the European
  Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 78818
  Alpha). RK was supported by the Federal professorship program Grant 1.456.2016/1.4
  and the Russian Foundation for Basic Research Grants 18-01-00036 and 19-01-00169.
  Open access funding provided by Institute of Science and Technology (IST Austria).
  The authors thank Alexey Balitskiy, Milena Radnović, and Serge Tabachnikov for useful
  discussions.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Roman
  full_name: Karasev, Roman
  last_name: Karasev
citation:
  ama: Akopyan A, Karasev R. When different norms lead to same billiard trajectories?
    <i>European Journal of Mathematics</i>. 2022;8(4):1309-1312. doi:<a href="https://doi.org/10.1007/s40879-020-00405-0">10.1007/s40879-020-00405-0</a>
  apa: Akopyan, A., &#38; Karasev, R. (2022). When different norms lead to same billiard
    trajectories? <i>European Journal of Mathematics</i>. Springer Nature. <a href="https://doi.org/10.1007/s40879-020-00405-0">https://doi.org/10.1007/s40879-020-00405-0</a>
  chicago: Akopyan, Arseniy, and Roman Karasev. “When Different Norms Lead to Same
    Billiard Trajectories?” <i>European Journal of Mathematics</i>. Springer Nature,
    2022. <a href="https://doi.org/10.1007/s40879-020-00405-0">https://doi.org/10.1007/s40879-020-00405-0</a>.
  ieee: A. Akopyan and R. Karasev, “When different norms lead to same billiard trajectories?,”
    <i>European Journal of Mathematics</i>, vol. 8, no. 4. Springer Nature, pp. 1309–1312,
    2022.
  ista: Akopyan A, Karasev R. 2022. When different norms lead to same billiard trajectories?
    European Journal of Mathematics. 8(4), 1309–1312.
  mla: Akopyan, Arseniy, and Roman Karasev. “When Different Norms Lead to Same Billiard
    Trajectories?” <i>European Journal of Mathematics</i>, vol. 8, no. 4, Springer
    Nature, 2022, pp. 1309–12, doi:<a href="https://doi.org/10.1007/s40879-020-00405-0">10.1007/s40879-020-00405-0</a>.
  short: A. Akopyan, R. Karasev, European Journal of Mathematics 8 (2022) 1309–1312.
date_created: 2020-05-03T22:00:48Z
date_published: 2022-12-01T00:00:00Z
date_updated: 2024-02-22T15:58:42Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s40879-020-00405-0
ec_funded: 1
external_id:
  arxiv:
  - '1912.12685'
file:
- access_level: open_access
  checksum: f53e71fd03744075adcd0b8fc1b8423d
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-04T10:33:42Z
  date_updated: 2020-07-14T12:48:03Z
  file_id: '7796'
  file_name: 2020_EuropMathematics_Akopyan.pdf
  file_size: 263926
  relation: main_file
file_date_updated: 2020-07-14T12:48:03Z
has_accepted_license: '1'
intvolume: '         8'
issue: '4'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 1309 - 1312
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: European Journal of Mathematics
publication_identifier:
  eissn:
  - 2199-6768
  issn:
  - 2199-675X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: When different norms lead to same billiard trajectories?
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2022'
...
---
_id: '8125'
abstract:
- lang: eng
  text: Context, such as behavioral state, is known to modulate memory formation and
    retrieval, but is usually ignored in associative memory models. Here, we propose
    several types of contextual modulation for associative memory networks that greatly
    increase their performance. In these networks, context inactivates specific neurons
    and connections, which modulates the effective connectivity of the network. Memories
    are stored only by the active components, thereby reducing interference from memories
    acquired in other contexts. Such networks exhibit several beneficial characteristics,
    including enhanced memory capacity, high robustness to noise, increased robustness
    to memory overloading, and better memory retention during continual learning.
    Furthermore, memories can be biased to have different relative strengths, or even
    gated on or off, according to contextual cues, providing a candidate model for
    cognitive control of memory and efficient memory search. An external context-encoding
    network can dynamically switch the memory network to a desired state, which we
    liken to experimentally observed contextual signals in prefrontal cortex and hippocampus.
    Overall, our work illustrates the benefits of organizing memory around context,
    and provides an important link between behavioral studies of memory and mechanistic
    details of neural circuits.</jats:p><jats:sec><jats:title>SIGNIFICANCE</jats:title><jats:p>Memory
    is context dependent — both encoding and recall vary in effectiveness and speed
    depending on factors like location and brain state during a task. We apply this
    idea to a simple computational model of associative memory through contextual
    gating of neurons and synaptic connections. Intriguingly, this results in several
    advantages, including vastly enhanced memory capacity, better robustness, and
    flexible memory gating. Our model helps to explain (i) how gating and inhibition
    contribute to memory processes, (ii) how memory access dynamically changes over
    time, and (iii) how context representations, such as those observed in hippocampus
    and prefrontal cortex, may interact with and control memory processes.
article_processing_charge: No
author:
- first_name: William F.
  full_name: Podlaski, William F.
  last_name: Podlaski
  orcid: 0000-0001-6619-7502
- first_name: Everton J.
  full_name: Agnes, Everton J.
  last_name: Agnes
  orcid: 0000-0001-7184-7311
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
citation:
  ama: Podlaski WF, Agnes EJ, Vogels TP. High capacity and dynamic accessibility in
    associative memory networks with context-dependent neuronal and synaptic gating.
    <i>bioRxiv</i>. 2022. doi:<a href="https://doi.org/10.1101/2020.01.08.898528">10.1101/2020.01.08.898528</a>
  apa: Podlaski, W. F., Agnes, E. J., &#38; Vogels, T. P. (2022). High capacity and
    dynamic accessibility in associative memory networks with context-dependent neuronal
    and synaptic gating. <i>bioRxiv</i>. Cold Spring Harbor Laboratory. <a href="https://doi.org/10.1101/2020.01.08.898528">https://doi.org/10.1101/2020.01.08.898528</a>
  chicago: Podlaski, William F., Everton J. Agnes, and Tim P Vogels. “High Capacity
    and Dynamic Accessibility in Associative Memory Networks with Context-Dependent
    Neuronal and Synaptic Gating.” <i>BioRxiv</i>. Cold Spring Harbor Laboratory,
    2022. <a href="https://doi.org/10.1101/2020.01.08.898528">https://doi.org/10.1101/2020.01.08.898528</a>.
  ieee: W. F. Podlaski, E. J. Agnes, and T. P. Vogels, “High capacity and dynamic
    accessibility in associative memory networks with context-dependent neuronal and
    synaptic gating,” <i>bioRxiv</i>. Cold Spring Harbor Laboratory, 2022.
  ista: Podlaski WF, Agnes EJ, Vogels TP. 2022. High capacity and dynamic accessibility
    in associative memory networks with context-dependent neuronal and synaptic gating.
    bioRxiv, <a href="https://doi.org/10.1101/2020.01.08.898528">10.1101/2020.01.08.898528</a>.
  mla: Podlaski, William F., et al. “High Capacity and Dynamic Accessibility in Associative
    Memory Networks with Context-Dependent Neuronal and Synaptic Gating.” <i>BioRxiv</i>,
    Cold Spring Harbor Laboratory, 2022, doi:<a href="https://doi.org/10.1101/2020.01.08.898528">10.1101/2020.01.08.898528</a>.
  short: W.F. Podlaski, E.J. Agnes, T.P. Vogels, BioRxiv (2022).
date_created: 2020-07-16T12:24:28Z
date_published: 2022-12-21T00:00:00Z
date_updated: 2024-03-06T12:03:59Z
day: '21'
department:
- _id: TiVo
doi: 10.1101/2020.01.08.898528
language:
- iso: eng
locked: '1'
main_file_link:
- open_access: '1'
  url: 'https://doi.org/10.1101/2020.01.08.898528 '
month: '12'
oa: 1
oa_version: Preprint
publication: bioRxiv
publication_status: published
publisher: Cold Spring Harbor Laboratory
status: public
title: High capacity and dynamic accessibility in associative memory networks with
  context-dependent neuronal and synaptic gating
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '7577'
abstract:
- lang: eng
  text: Weak convergence of inertial iterative method for solving variational inequalities
    is the focus of this paper. The cost function is assumed to be non-Lipschitz and
    monotone. We propose a projection-type method with inertial terms and give weak
    convergence analysis under appropriate conditions. Some test results are performed
    and compared with relevant methods in the literature to show the efficiency and
    advantages given by our proposed methods.
acknowledgement: The project of the first author has received funding from the European
  Research Council (ERC) under the European Union's Seventh Framework Program (FP7
  - 2007-2013) (Grant agreement No. 616160).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Yekini
  full_name: Shehu, Yekini
  id: 3FC7CB58-F248-11E8-B48F-1D18A9856A87
  last_name: Shehu
  orcid: 0000-0001-9224-7139
- first_name: Olaniyi S.
  full_name: Iyiola, Olaniyi S.
  last_name: Iyiola
citation:
  ama: Shehu Y, Iyiola OS. Weak convergence for variational inequalities with inertial-type
    method. <i>Applicable Analysis</i>. 2022;101(1):192-216. doi:<a href="https://doi.org/10.1080/00036811.2020.1736287">10.1080/00036811.2020.1736287</a>
  apa: Shehu, Y., &#38; Iyiola, O. S. (2022). Weak convergence for variational inequalities
    with inertial-type method. <i>Applicable Analysis</i>. Taylor &#38; Francis. <a
    href="https://doi.org/10.1080/00036811.2020.1736287">https://doi.org/10.1080/00036811.2020.1736287</a>
  chicago: Shehu, Yekini, and Olaniyi S. Iyiola. “Weak Convergence for Variational
    Inequalities with Inertial-Type Method.” <i>Applicable Analysis</i>. Taylor &#38;
    Francis, 2022. <a href="https://doi.org/10.1080/00036811.2020.1736287">https://doi.org/10.1080/00036811.2020.1736287</a>.
  ieee: Y. Shehu and O. S. Iyiola, “Weak convergence for variational inequalities
    with inertial-type method,” <i>Applicable Analysis</i>, vol. 101, no. 1. Taylor
    &#38; Francis, pp. 192–216, 2022.
  ista: Shehu Y, Iyiola OS. 2022. Weak convergence for variational inequalities with
    inertial-type method. Applicable Analysis. 101(1), 192–216.
  mla: Shehu, Yekini, and Olaniyi S. Iyiola. “Weak Convergence for Variational Inequalities
    with Inertial-Type Method.” <i>Applicable Analysis</i>, vol. 101, no. 1, Taylor
    &#38; Francis, 2022, pp. 192–216, doi:<a href="https://doi.org/10.1080/00036811.2020.1736287">10.1080/00036811.2020.1736287</a>.
  short: Y. Shehu, O.S. Iyiola, Applicable Analysis 101 (2022) 192–216.
date_created: 2020-03-09T07:06:52Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2024-03-05T14:01:52Z
day: '01'
ddc:
- '510'
- '515'
- '518'
department:
- _id: VlKo
doi: 10.1080/00036811.2020.1736287
ec_funded: 1
external_id:
  arxiv:
  - '2101.08057'
  isi:
  - '000518364100001'
file:
- access_level: open_access
  checksum: 869efe8cb09505dfa6012f67d20db63d
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-12T10:42:54Z
  date_updated: 2021-03-16T23:30:06Z
  embargo: 2021-03-15
  file_id: '8648'
  file_name: 2020_ApplicAnalysis_Shehu.pdf
  file_size: 4282586
  relation: main_file
file_date_updated: 2021-03-16T23:30:06Z
has_accepted_license: '1'
intvolume: '       101'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 192-216
project:
- _id: 25FBA906-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '616160'
  name: 'Discrete Optimization in Computer Vision: Theory and Practice'
publication: Applicable Analysis
publication_identifier:
  eissn:
  - 1563-504X
  issn:
  - 0003-6811
publication_status: published
publisher: Taylor & Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: Weak convergence for variational inequalities with inertial-type method
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 101
year: '2022'
...
---
_id: '14355'
abstract:
- lang: eng
  text: 'Purpose: The mediator (MED) multisubunit-complex modulates the activity of
    the transcriptional machinery, and genetic defects in different MED subunits (17,
    20, 27) have been implicated in neurologic diseases. In this study, we identified
    a recurrent homozygous variant in MED11 (c.325C>T; p.Arg109Ter) in 7 affected
    individuals from 5 unrelated families. Methods: To investigate the genetic cause
    of the disease, exome or genome sequencing were performed in 5 unrelated families
    identified via different research networks and Matchmaker Exchange. Deep clinical
    and brain imaging evaluations were performed by clinical pediatric neurologists
    and neuroradiologists. The functional effect of the candidate variant on both
    MED11 RNA and protein was assessed using reverse transcriptase polymerase chain
    reaction and western blotting using fibroblast cell lines derived from 1 affected
    individual and controls and through computational approaches. Knockouts in zebrafish
    were generated using clustered regularly interspaced short palindromic repeats/Cas9.
    Results: The disease was characterized by microcephaly, profound neurodevelopmental
    impairment, exaggerated startle response, myoclonic seizures, progressive widespread
    neurodegeneration, and premature death. Functional studies on patient-derived
    fibroblasts did not show a loss of protein function but rather disruption of the
    C-terminal of MED11, likely impairing binding to other MED subunits. A zebrafish
    knockout model recapitulates key clinical phenotypes. Conclusion: Loss of the
    C-terminal of MED subunit 11 may affect its binding efficiency to other MED subunits,
    thus implicating the MED-complex stability in brain development and neurodegeneration.
    (C) 2022 The Authors. Published by Elsevier Inc. on behalf of American College
    of Medical Genetics and Genomics.'
article_processing_charge: No
article_type: original
author:
- first_name: Elisa
  full_name: Cali, Elisa
  last_name: Cali
- first_name: Sheng-Jia
  full_name: Lin, Sheng-Jia
  last_name: Lin
- first_name: Clarissa
  full_name: Rocca, Clarissa
  last_name: Rocca
- first_name: Yavuz
  full_name: Sahin, Yavuz
  last_name: Sahin
- first_name: Aisha
  full_name: Al Shamsi, Aisha
  last_name: Al Shamsi
- first_name: Salima
  full_name: El Chehadeh, Salima
  last_name: El Chehadeh
- first_name: Myriam
  full_name: Chaabouni, Myriam
  last_name: Chaabouni
- first_name: Kshitij
  full_name: Mankad, Kshitij
  last_name: Mankad
- first_name: Evangelia
  full_name: Galanaki, Evangelia
  last_name: Galanaki
- first_name: Stephanie
  full_name: Efthymiou, Stephanie
  last_name: Efthymiou
- first_name: Sniya
  full_name: Sudhakar, Sniya
  last_name: Sudhakar
- first_name: Alkyoni
  full_name: Athanasiou-Fragkouli, Alkyoni
  last_name: Athanasiou-Fragkouli
- first_name: Tamer
  full_name: Celik, Tamer
  last_name: Celik
- first_name: Nejat
  full_name: Narli, Nejat
  last_name: Narli
- first_name: Sebastiano
  full_name: Bianca, Sebastiano
  last_name: Bianca
- first_name: David
  full_name: Murphy, David
  last_name: Murphy
- first_name: Francisco Martins De Carvalho
  full_name: Moreira, Francisco Martins De Carvalho
  last_name: Moreira
- first_name: Andrea
  full_name: Accogli, Andrea
  last_name: Accogli
- first_name: Cassidy
  full_name: Petree, Cassidy
  last_name: Petree
- first_name: Kevin
  full_name: Huang, Kevin
  id: 3b3d2888-1ff6-11ee-9fa6-8f209ca91fe3
  last_name: Huang
  orcid: 0000-0002-2512-7812
- first_name: Kamel
  full_name: Monastiri, Kamel
  last_name: Monastiri
- first_name: Masoud
  full_name: Edizadeh, Masoud
  last_name: Edizadeh
- first_name: Rosaria
  full_name: Nardello, Rosaria
  last_name: Nardello
- first_name: Marzia
  full_name: Ognibene, Marzia
  last_name: Ognibene
- first_name: Patrizia
  full_name: De Marco, Patrizia
  last_name: De Marco
- first_name: Martino
  full_name: Ruggieri, Martino
  last_name: Ruggieri
- first_name: Federico
  full_name: Zara, Federico
  last_name: Zara
- first_name: Pasquale
  full_name: Striano, Pasquale
  last_name: Striano
- first_name: Yavuz
  full_name: Sahin, Yavuz
  last_name: Sahin
- first_name: Lihadh
  full_name: Al-Gazali, Lihadh
  last_name: Al-Gazali
- first_name: Marie Therese Abi
  full_name: Warde, Marie Therese Abi
  last_name: Warde
- first_name: Benedicte
  full_name: Gerard, Benedicte
  last_name: Gerard
- first_name: Giovanni
  full_name: Zifarelli, Giovanni
  last_name: Zifarelli
- first_name: Christian
  full_name: Beetz, Christian
  last_name: Beetz
- first_name: Sara
  full_name: Fortuna, Sara
  last_name: Fortuna
- first_name: Miguel
  full_name: Soler, Miguel
  last_name: Soler
- first_name: Enza Maria
  full_name: Valente, Enza Maria
  last_name: Valente
- first_name: Gaurav
  full_name: Varshney, Gaurav
  last_name: Varshney
- first_name: Reza
  full_name: Maroofian, Reza
  last_name: Maroofian
- first_name: Vincenzo
  full_name: Salpietro, Vincenzo
  last_name: Salpietro
- first_name: Henry
  full_name: Houlden, Henry
  last_name: Houlden
- first_name: SYNaPS Study
  full_name: Grp, SYNaPS Study
  last_name: Grp
citation:
  ama: Cali E, Lin S-J, Rocca C, et al. A homozygous MED11 C-terminal variant causes
    a lethal neurodegenerative disease. <i>Genetics in Medicine</i>. 2022;24(10):2194-2203.
    doi:<a href="https://doi.org/10.1016/j.gim.2022.07.013">10.1016/j.gim.2022.07.013</a>
  apa: Cali, E., Lin, S.-J., Rocca, C., Sahin, Y., Al Shamsi, A., El Chehadeh, S.,
    … Grp, Syn. S. (2022). A homozygous MED11 C-terminal variant causes a lethal neurodegenerative
    disease. <i>Genetics in Medicine</i>. Elsevier. <a href="https://doi.org/10.1016/j.gim.2022.07.013">https://doi.org/10.1016/j.gim.2022.07.013</a>
  chicago: Cali, Elisa, Sheng-Jia Lin, Clarissa Rocca, Yavuz Sahin, Aisha Al Shamsi,
    Salima El Chehadeh, Myriam Chaabouni, et al. “A Homozygous MED11 C-Terminal Variant
    Causes a Lethal Neurodegenerative Disease.” <i>Genetics in Medicine</i>. Elsevier,
    2022. <a href="https://doi.org/10.1016/j.gim.2022.07.013">https://doi.org/10.1016/j.gim.2022.07.013</a>.
  ieee: E. Cali <i>et al.</i>, “A homozygous MED11 C-terminal variant causes a lethal
    neurodegenerative disease,” <i>Genetics in Medicine</i>, vol. 24, no. 10. Elsevier,
    pp. 2194–2203, 2022.
  ista: Cali E, Lin S-J, Rocca C, Sahin Y, Al Shamsi A, El Chehadeh S, Chaabouni M,
    Mankad K, Galanaki E, Efthymiou S, Sudhakar S, Athanasiou-Fragkouli A, Celik T,
    Narli N, Bianca S, Murphy D, Moreira FMDC, Accogli A, Petree C, Huang K, Monastiri
    K, Edizadeh M, Nardello R, Ognibene M, De Marco P, Ruggieri M, Zara F, Striano
    P, Sahin Y, Al-Gazali L, Warde MTA, Gerard B, Zifarelli G, Beetz C, Fortuna S,
    Soler M, Valente EM, Varshney G, Maroofian R, Salpietro V, Houlden H, Grp SynS.
    2022. A homozygous MED11 C-terminal variant causes a lethal neurodegenerative
    disease. Genetics in Medicine. 24(10), 2194–2203.
  mla: Cali, Elisa, et al. “A Homozygous MED11 C-Terminal Variant Causes a Lethal
    Neurodegenerative Disease.” <i>Genetics in Medicine</i>, vol. 24, no. 10, Elsevier,
    2022, pp. 2194–203, doi:<a href="https://doi.org/10.1016/j.gim.2022.07.013">10.1016/j.gim.2022.07.013</a>.
  short: E. Cali, S.-J. Lin, C. Rocca, Y. Sahin, A. Al Shamsi, S. El Chehadeh, M.
    Chaabouni, K. Mankad, E. Galanaki, S. Efthymiou, S. Sudhakar, A. Athanasiou-Fragkouli,
    T. Celik, N. Narli, S. Bianca, D. Murphy, F.M.D.C. Moreira, A. Accogli, C. Petree,
    K. Huang, K. Monastiri, M. Edizadeh, R. Nardello, M. Ognibene, P. De Marco, M.
    Ruggieri, F. Zara, P. Striano, Y. Sahin, L. Al-Gazali, M.T.A. Warde, B. Gerard,
    G. Zifarelli, C. Beetz, S. Fortuna, M. Soler, E.M. Valente, G. Varshney, R. Maroofian,
    V. Salpietro, H. Houlden, Syn.S. Grp, Genetics in Medicine 24 (2022) 2194–2203.
date_created: 2023-09-20T20:57:18Z
date_published: 2022-10-01T00:00:00Z
date_updated: 2023-09-25T08:57:07Z
day: '01'
ddc:
- '570'
department:
- _id: GradSch
doi: 10.1016/j.gim.2022.07.013
extern: '1'
file:
- access_level: open_access
  checksum: 8117175a89129eb5022d81ffe7625f9f
  content_type: application/pdf
  creator: dernst
  date_created: 2023-09-25T08:56:06Z
  date_updated: 2023-09-25T08:56:06Z
  file_id: '14371'
  file_name: 2022_GeneticsMedicine_Calin.pdf
  file_size: 1434037
  relation: main_file
  success: 1
file_date_updated: 2023-09-25T08:56:06Z
has_accepted_license: '1'
intvolume: '        24'
issue: '10'
keyword:
- Human mediator complex
- MED11
- MEDopathies
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 2194-2203
publication: Genetics in Medicine
publication_identifier:
  issn:
  - 1098-3600
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: A homozygous MED11 C-terminal variant causes a lethal neurodegenerative disease
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2022'
...
---
_id: '14381'
abstract:
- lang: eng
  text: Expander graphs (sparse but highly connected graphs) have, since their inception,
    been the source of deep links between Mathematics and Computer Science as well
    as applications to other areas. In recent years, a fascinating theory of high-dimensional
    expanders has begun to emerge, which is still in a formative stage but has nonetheless
    already lead to a number of striking results. Unlike for graphs, in higher dimensions
    there is a rich array of non-equivalent notions of expansion (coboundary expansion,
    cosystolic expansion, topological expansion, spectral expansion, etc.), with differents
    strengths and applications. In this talk, we will survey this landscape of high-dimensional
    expansion, with a focus on two main results. First, we will present Gromov’s Topological
    Overlap Theorem, which asserts that coboundary expansion (a quantitative version
    of vanishing mod 2 cohomology) implies topological expansion (roughly, the property
    that for every map from a simplicial complex to a manifold of the same dimension,
    the images of a positive fraction of the simplices have a point in common). Second,
    we will outline a construction of bounded degree 2-dimensional topological expanders,
    due to Kaufman, Kazhdan, and Lubotzky.
article_processing_charge: No
article_type: original
author:
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
citation:
  ama: Wagner U. High-dimensional expanders (after Gromov, Kaufman, Kazhdan, Lubotzky,
    and others). <i>Bulletin de la Societe Mathematique de France</i>. 2022;438:281-294.
    doi:<a href="https://doi.org/10.24033/ast.1188">10.24033/ast.1188</a>
  apa: Wagner, U. (2022). High-dimensional expanders (after Gromov, Kaufman, Kazhdan,
    Lubotzky, and others). <i>Bulletin de La Societe Mathematique de France</i>. Societe
    Mathematique de France. <a href="https://doi.org/10.24033/ast.1188">https://doi.org/10.24033/ast.1188</a>
  chicago: Wagner, Uli. “High-Dimensional Expanders (after Gromov, Kaufman, Kazhdan,
    Lubotzky, and Others).” <i>Bulletin de La Societe Mathematique de France</i>.
    Societe Mathematique de France, 2022. <a href="https://doi.org/10.24033/ast.1188">https://doi.org/10.24033/ast.1188</a>.
  ieee: U. Wagner, “High-dimensional expanders (after Gromov, Kaufman, Kazhdan, Lubotzky,
    and others),” <i>Bulletin de la Societe Mathematique de France</i>, vol. 438.
    Societe Mathematique de France, pp. 281–294, 2022.
  ista: Wagner U. 2022. High-dimensional expanders (after Gromov, Kaufman, Kazhdan,
    Lubotzky, and others). Bulletin de la Societe Mathematique de France. 438, 281–294.
  mla: Wagner, Uli. “High-Dimensional Expanders (after Gromov, Kaufman, Kazhdan, Lubotzky,
    and Others).” <i>Bulletin de La Societe Mathematique de France</i>, vol. 438,
    Societe Mathematique de France, 2022, pp. 281–94, doi:<a href="https://doi.org/10.24033/ast.1188">10.24033/ast.1188</a>.
  short: U. Wagner, Bulletin de La Societe Mathematique de France 438 (2022) 281–294.
date_created: 2023-10-01T22:01:14Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2023-10-03T08:04:03Z
day: '01'
department:
- _id: UlWa
doi: 10.24033/ast.1188
intvolume: '       438'
language:
- iso: eng
month: '01'
oa_version: None
page: 281-294
publication: Bulletin de la Societe Mathematique de France
publication_identifier:
  eissn:
  - 2102-622X
  issn:
  - 0037-9484
publication_status: published
publisher: Societe Mathematique de France
quality_controlled: '1'
scopus_import: '1'
status: public
title: High-dimensional expanders (after Gromov, Kaufman, Kazhdan, Lubotzky, and others)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 438
year: '2022'
...
---
_id: '14437'
abstract:
- lang: eng
  text: Future LEDs could be based on lead halide perovskites. A breakthrough in preparing
    device-compatible solids composed of nanoscale perovskite crystals overcomes a
    long-standing hurdle in making blue perovskite LEDs.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Hendrik
  full_name: Utzat, Hendrik
  last_name: Utzat
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
citation:
  ama: Utzat H, Ibáñez M. Molecular engineering enables bright blue LEDs. <i>Nature</i>.
    2022;612(7941):638-639. doi:<a href="https://doi.org/10.1038/d41586-022-04447-0">10.1038/d41586-022-04447-0</a>
  apa: Utzat, H., &#38; Ibáñez, M. (2022). Molecular engineering enables bright blue
    LEDs. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/d41586-022-04447-0">https://doi.org/10.1038/d41586-022-04447-0</a>
  chicago: Utzat, Hendrik, and Maria Ibáñez. “Molecular Engineering Enables Bright
    Blue LEDs.” <i>Nature</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/d41586-022-04447-0">https://doi.org/10.1038/d41586-022-04447-0</a>.
  ieee: H. Utzat and M. Ibáñez, “Molecular engineering enables bright blue LEDs,”
    <i>Nature</i>, vol. 612, no. 7941. Springer Nature, pp. 638–639, 2022.
  ista: Utzat H, Ibáñez M. 2022. Molecular engineering enables bright blue LEDs. Nature.
    612(7941), 638–639.
  mla: Utzat, Hendrik, and Maria Ibáñez. “Molecular Engineering Enables Bright Blue
    LEDs.” <i>Nature</i>, vol. 612, no. 7941, Springer Nature, 2022, pp. 638–39, doi:<a
    href="https://doi.org/10.1038/d41586-022-04447-0">10.1038/d41586-022-04447-0</a>.
  short: H. Utzat, M. Ibáñez, Nature 612 (2022) 638–639.
date_created: 2023-10-17T11:14:43Z
date_published: 2022-12-21T00:00:00Z
date_updated: 2023-10-18T06:26:30Z
day: '21'
department:
- _id: MaIb
doi: 10.1038/d41586-022-04447-0
external_id:
  pmid:
  - '36543947'
intvolume: '       612'
issue: '7941'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '12'
oa_version: None
page: 638-639
pmid: 1
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Molecular engineering enables bright blue LEDs
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 612
year: '2022'
...
---
_id: '14520'
abstract:
- lang: eng
  text: 'This dataset comprises all data shown in the figures of the submitted article
    "Compact vacuum gap transmon qubits: Selective and sensitive probes for superconductor
    surface losses" at arxiv.org/abs/2206.14104. Additional raw data are available
    from the corresponding author on reasonable request.'
article_processing_charge: No
author:
- first_name: Martin
  full_name: Zemlicka, Martin
  id: 2DCF8DE6-F248-11E8-B48F-1D18A9856A87
  last_name: Zemlicka
- first_name: Elena
  full_name: Redchenko, Elena
  id: 2C21D6E8-F248-11E8-B48F-1D18A9856A87
  last_name: Redchenko
- first_name: Matilda
  full_name: Peruzzo, Matilda
  id: 3F920B30-F248-11E8-B48F-1D18A9856A87
  last_name: Peruzzo
  orcid: 0000-0002-3415-4628
- first_name: Farid
  full_name: Hassani, Farid
  id: 2AED110C-F248-11E8-B48F-1D18A9856A87
  last_name: Hassani
  orcid: 0000-0001-6937-5773
- first_name: Andrea
  full_name: Trioni, Andrea
  id: 42F71B44-F248-11E8-B48F-1D18A9856A87
  last_name: Trioni
- first_name: Shabir
  full_name: Barzanjeh, Shabir
  id: 2D25E1F6-F248-11E8-B48F-1D18A9856A87
  last_name: Barzanjeh
  orcid: 0000-0003-0415-1423
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
citation:
  ama: 'Zemlicka M, Redchenko E, Peruzzo M, et al. Compact vacuum gap transmon qubits:
    Selective and sensitive probes for superconductor surface losses. 2022. doi:<a
    href="https://doi.org/10.5281/ZENODO.8408897">10.5281/ZENODO.8408897</a>'
  apa: 'Zemlicka, M., Redchenko, E., Peruzzo, M., Hassani, F., Trioni, A., Barzanjeh,
    S., &#38; Fink, J. M. (2022). Compact vacuum gap transmon qubits: Selective and
    sensitive probes for superconductor surface losses. Zenodo. <a href="https://doi.org/10.5281/ZENODO.8408897">https://doi.org/10.5281/ZENODO.8408897</a>'
  chicago: 'Zemlicka, Martin, Elena Redchenko, Matilda Peruzzo, Farid Hassani, Andrea
    Trioni, Shabir Barzanjeh, and Johannes M Fink. “Compact Vacuum Gap Transmon Qubits:
    Selective and Sensitive Probes for Superconductor Surface Losses.” Zenodo, 2022.
    <a href="https://doi.org/10.5281/ZENODO.8408897">https://doi.org/10.5281/ZENODO.8408897</a>.'
  ieee: 'M. Zemlicka <i>et al.</i>, “Compact vacuum gap transmon qubits: Selective
    and sensitive probes for superconductor surface losses.” Zenodo, 2022.'
  ista: 'Zemlicka M, Redchenko E, Peruzzo M, Hassani F, Trioni A, Barzanjeh S, Fink
    JM. 2022. Compact vacuum gap transmon qubits: Selective and sensitive probes for
    superconductor surface losses, Zenodo, <a href="https://doi.org/10.5281/ZENODO.8408897">10.5281/ZENODO.8408897</a>.'
  mla: 'Zemlicka, Martin, et al. <i>Compact Vacuum Gap Transmon Qubits: Selective
    and Sensitive Probes for Superconductor Surface Losses</i>. Zenodo, 2022, doi:<a
    href="https://doi.org/10.5281/ZENODO.8408897">10.5281/ZENODO.8408897</a>.'
  short: M. Zemlicka, E. Redchenko, M. Peruzzo, F. Hassani, A. Trioni, S. Barzanjeh,
    J.M. Fink, (2022).
date_created: 2023-11-13T08:09:10Z
date_published: 2022-06-28T00:00:00Z
date_updated: 2024-09-10T12:23:57Z
day: '28'
ddc:
- '530'
department:
- _id: JoFi
doi: 10.5281/ZENODO.8408897
has_accepted_license: '1'
license: https://creativecommons.org/publicdomain/zero/1.0/
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/ZENODO.8408897
month: '06'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '14517'
    relation: used_in_publication
    status: public
status: public
title: 'Compact vacuum gap transmon qubits: Selective and sensitive probes for superconductor
  surface losses'
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '14597'
abstract:
- lang: eng
  text: "Phase-field models such as the Allen-Cahn equation may give rise to the formation
    and evolution of geometric shapes, a phenomenon that may be analyzed rigorously
    in suitable scaling regimes. In its sharp-interface limit, the vectorial Allen-Cahn
    equation with a potential with N≥3 distinct minima has been conjectured to describe
    the evolution of branched interfaces by multiphase mean curvature flow.\r\nIn
    the present work, we give a rigorous proof for this statement in two and three
    ambient dimensions and for a suitable class of potentials: As long as a strong
    solution to multiphase mean curvature flow exists, solutions to the vectorial
    Allen-Cahn equation with well-prepared initial data converge towards multiphase
    mean curvature flow in the limit of vanishing interface width parameter ε↘0. We
    even establish the rate of convergence O(ε1/2).\r\nOur approach is based on the
    gradient flow structure of the Allen-Cahn equation and its limiting motion: Building
    on the recent concept of \"gradient flow calibrations\" for multiphase mean curvature
    flow, we introduce a notion of relative entropy for the vectorial Allen-Cahn equation
    with multi-well potential. This enables us to overcome the limitations of other
    approaches, e.g. avoiding the need for a stability analysis of the Allen-Cahn
    operator or additional convergence hypotheses for the energy at positive times."
article_processing_charge: No
arxiv: 1
author:
- first_name: Julian L
  full_name: Fischer, Julian L
  id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
  last_name: Fischer
  orcid: 0000-0002-0479-558X
- first_name: Alice
  full_name: Marveggio, Alice
  id: 25647992-AA84-11E9-9D75-8427E6697425
  last_name: Marveggio
citation:
  ama: Fischer JL, Marveggio A. Quantitative convergence of the vectorial Allen-Cahn
    equation towards multiphase mean curvature flow. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/ARXIV.2203.17143">10.48550/ARXIV.2203.17143</a>
  apa: Fischer, J. L., &#38; Marveggio, A. (n.d.). Quantitative convergence of the
    vectorial Allen-Cahn equation towards multiphase mean curvature flow. <i>arXiv</i>.
    <a href="https://doi.org/10.48550/ARXIV.2203.17143">https://doi.org/10.48550/ARXIV.2203.17143</a>
  chicago: Fischer, Julian L, and Alice Marveggio. “Quantitative Convergence of the
    Vectorial Allen-Cahn Equation towards Multiphase Mean Curvature Flow.” <i>ArXiv</i>,
    n.d. <a href="https://doi.org/10.48550/ARXIV.2203.17143">https://doi.org/10.48550/ARXIV.2203.17143</a>.
  ieee: J. L. Fischer and A. Marveggio, “Quantitative convergence of the vectorial
    Allen-Cahn equation towards multiphase mean curvature flow,” <i>arXiv</i>. .
  ista: Fischer JL, Marveggio A. Quantitative convergence of the vectorial Allen-Cahn
    equation towards multiphase mean curvature flow. arXiv, <a href="https://doi.org/10.48550/ARXIV.2203.17143">10.48550/ARXIV.2203.17143</a>.
  mla: Fischer, Julian L., and Alice Marveggio. “Quantitative Convergence of the Vectorial
    Allen-Cahn Equation towards Multiphase Mean Curvature Flow.” <i>ArXiv</i>, doi:<a
    href="https://doi.org/10.48550/ARXIV.2203.17143">10.48550/ARXIV.2203.17143</a>.
  short: J.L. Fischer, A. Marveggio, ArXiv (n.d.).
date_created: 2023-11-23T09:30:02Z
date_published: 2022-03-31T00:00:00Z
date_updated: 2023-11-30T13:25:02Z
day: '31'
department:
- _id: JuFi
doi: 10.48550/ARXIV.2203.17143
ec_funded: 1
external_id:
  arxiv:
  - '2203.17143'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2203.17143
month: '03'
oa: 1
oa_version: Preprint
project:
- _id: 0aa76401-070f-11eb-9043-b5bb049fa26d
  call_identifier: H2020
  grant_number: '948819'
  name: Bridging Scales in Random Materials
publication: arXiv
publication_status: submitted
related_material:
  record:
  - id: '14587'
    relation: dissertation_contains
    status: public
status: public
title: Quantitative convergence of the vectorial Allen-Cahn equation towards multiphase
  mean curvature flow
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2022'
...
---
_id: '14600'
abstract:
- lang: eng
  text: We study the problem of learning controllers for discrete-time non-linear
    stochastic dynamical systems with formal reach-avoid guarantees. This work presents
    the first method for providing formal reach-avoid guarantees, which combine and
    generalize stability and safety guarantees, with a tolerable probability threshold
    $p\in[0,1]$ over the infinite time horizon. Our method leverages advances in machine
    learning literature and it represents formal certificates as neural networks.
    In particular, we learn a certificate in the form of a reach-avoid supermartingale
    (RASM), a novel notion that we introduce in this work. Our RASMs provide reachability
    and avoidance guarantees by imposing constraints on what can be viewed as a stochastic
    extension of level sets of Lyapunov functions for deterministic systems. Our approach
    solves several important problems -- it can be used to learn a control policy
    from scratch, to verify a reach-avoid specification for a fixed control policy,
    or to fine-tune a pre-trained policy if it does not satisfy the reach-avoid specification.
    We validate our approach on $3$ stochastic non-linear reinforcement learning tasks.
article_processing_charge: No
arxiv: 1
author:
- first_name: Dorde
  full_name: Zikelic, Dorde
  id: 294AA7A6-F248-11E8-B48F-1D18A9856A87
  last_name: Zikelic
  orcid: 0000-0002-4681-1699
- first_name: Mathias
  full_name: Lechner, Mathias
  id: 3DC22916-F248-11E8-B48F-1D18A9856A87
  last_name: Lechner
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
citation:
  ama: Zikelic D, Lechner M, Henzinger TA, Chatterjee K. Learning control policies
    for stochastic systems with reach-avoid guarantees. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/ARXIV.2210.05308">10.48550/ARXIV.2210.05308</a>
  apa: Zikelic, D., Lechner, M., Henzinger, T. A., &#38; Chatterjee, K. (n.d.). Learning
    control policies for stochastic systems with reach-avoid guarantees. <i>arXiv</i>.
    <a href="https://doi.org/10.48550/ARXIV.2210.05308">https://doi.org/10.48550/ARXIV.2210.05308</a>
  chicago: Zikelic, Dorde, Mathias Lechner, Thomas A Henzinger, and Krishnendu Chatterjee.
    “Learning Control Policies for Stochastic Systems with Reach-Avoid Guarantees.”
    <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/ARXIV.2210.05308">https://doi.org/10.48550/ARXIV.2210.05308</a>.
  ieee: D. Zikelic, M. Lechner, T. A. Henzinger, and K. Chatterjee, “Learning control
    policies for stochastic systems with reach-avoid guarantees,” <i>arXiv</i>. .
  ista: Zikelic D, Lechner M, Henzinger TA, Chatterjee K. Learning control policies
    for stochastic systems with reach-avoid guarantees. arXiv, <a href="https://doi.org/10.48550/ARXIV.2210.05308">10.48550/ARXIV.2210.05308</a>.
  mla: Zikelic, Dorde, et al. “Learning Control Policies for Stochastic Systems with
    Reach-Avoid Guarantees.” <i>ArXiv</i>, doi:<a href="https://doi.org/10.48550/ARXIV.2210.05308">10.48550/ARXIV.2210.05308</a>.
  short: D. Zikelic, M. Lechner, T.A. Henzinger, K. Chatterjee, ArXiv (n.d.).
date_created: 2023-11-24T13:10:09Z
date_published: 2022-11-29T00:00:00Z
date_updated: 2025-07-14T09:10:02Z
day: '29'
department:
- _id: KrCh
- _id: ToHe
doi: 10.48550/ARXIV.2210.05308
ec_funded: 1
external_id:
  arxiv:
  - '2210.05308'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-sa/4.0/
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2210.05308
month: '11'
oa: 1
oa_version: Preprint
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: arXiv
publication_status: submitted
related_material:
  record:
  - id: '14539'
    relation: dissertation_contains
    status: public
  - id: '14830'
    relation: later_version
    status: public
status: public
title: Learning control policies for stochastic systems with reach-avoid guarantees
tmp:
  image: /images/cc_by_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-sa/4.0/legalcode
  name: Creative Commons Attribution-ShareAlike 4.0 International Public License (CC
    BY-SA 4.0)
  short: CC BY-SA (4.0)
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2022'
...
---
_id: '14601'
abstract:
- lang: eng
  text: "In this work, we address the problem of learning provably stable neural\r\nnetwork
    policies for stochastic control systems. While recent work has\r\ndemonstrated
    the feasibility of certifying given policies using martingale\r\ntheory, the problem
    of how to learn such policies is little explored. Here, we\r\nstudy the effectiveness
    of jointly learning a policy together with a martingale\r\ncertificate that proves
    its stability using a single learning algorithm. We\r\nobserve that the joint
    optimization problem becomes easily stuck in local\r\nminima when starting from
    a randomly initialized policy. Our results suggest\r\nthat some form of pre-training
    of the policy is required for the joint\r\noptimization to repair and verify the
    policy successfully."
article_processing_charge: No
arxiv: 1
author:
- first_name: Dorde
  full_name: Zikelic, Dorde
  id: 294AA7A6-F248-11E8-B48F-1D18A9856A87
  last_name: Zikelic
  orcid: 0000-0002-4681-1699
- first_name: Mathias
  full_name: Lechner, Mathias
  id: 3DC22916-F248-11E8-B48F-1D18A9856A87
  last_name: Lechner
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
citation:
  ama: Zikelic D, Lechner M, Chatterjee K, Henzinger TA. Learning stabilizing policies
    in stochastic control systems. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2205.11991">10.48550/arXiv.2205.11991</a>
  apa: Zikelic, D., Lechner, M., Chatterjee, K., &#38; Henzinger, T. A. (n.d.). Learning
    stabilizing policies in stochastic control systems. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2205.11991">https://doi.org/10.48550/arXiv.2205.11991</a>
  chicago: Zikelic, Dorde, Mathias Lechner, Krishnendu Chatterjee, and Thomas A Henzinger.
    “Learning Stabilizing Policies in Stochastic Control Systems.” <i>ArXiv</i>, n.d.
    <a href="https://doi.org/10.48550/arXiv.2205.11991">https://doi.org/10.48550/arXiv.2205.11991</a>.
  ieee: D. Zikelic, M. Lechner, K. Chatterjee, and T. A. Henzinger, “Learning stabilizing
    policies in stochastic control systems,” <i>arXiv</i>. .
  ista: Zikelic D, Lechner M, Chatterjee K, Henzinger TA. Learning stabilizing policies
    in stochastic control systems. arXiv, <a href="https://doi.org/10.48550/arXiv.2205.11991">10.48550/arXiv.2205.11991</a>.
  mla: Zikelic, Dorde, et al. “Learning Stabilizing Policies in Stochastic Control
    Systems.” <i>ArXiv</i>, doi:<a href="https://doi.org/10.48550/arXiv.2205.11991">10.48550/arXiv.2205.11991</a>.
  short: D. Zikelic, M. Lechner, K. Chatterjee, T.A. Henzinger, ArXiv (n.d.).
date_created: 2023-11-24T13:22:30Z
date_published: 2022-05-24T00:00:00Z
date_updated: 2025-07-14T09:10:00Z
day: '24'
department:
- _id: KrCh
- _id: ToHe
doi: 10.48550/arXiv.2205.11991
ec_funded: 1
external_id:
  arxiv:
  - '2205.11991'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2205.11991
month: '05'
oa: 1
oa_version: Preprint
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: arXiv
publication_status: submitted
related_material:
  record:
  - id: '14539'
    relation: dissertation_contains
    status: public
status: public
title: Learning stabilizing policies in stochastic control systems
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2022'
...
