---
_id: '11354'
abstract:
- lang: eng
  text: We construct a recurrent diffusion process with values in the space of probability
    measures over an arbitrary closed Riemannian manifold of dimension d≥2. The process
    is associated with the Dirichlet form defined by integration of the Wasserstein
    gradient w.r.t. the Dirichlet–Ferguson measure, and is the counterpart on multidimensional
    base spaces to the modified massive Arratia flow over the unit interval described
    in V. Konarovskyi and M.-K. von Renesse (Comm. Pure Appl. Math. 72 (2019) 764–800).
    Together with two different constructions of the process, we discuss its ergodicity,
    invariant sets, finite-dimensional approximations, and Varadhan short-time asymptotics.
acknowledgement: Research supported by the Sonderforschungsbereich 1060 and the Hausdorff
  Center for Mathematics. The author gratefully acknowledges funding of his current
  position at IST Austria by the Austrian Science Fund (FWF) grant F65 and by the
  European Research Council (ERC, Grant agreement No. 716117, awarded to Prof. Dr.
  Jan Maas).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Lorenzo
  full_name: Dello Schiavo, Lorenzo
  id: ECEBF480-9E4F-11EA-B557-B0823DDC885E
  last_name: Dello Schiavo
  orcid: 0000-0002-9881-6870
citation:
  ama: Dello Schiavo L. The Dirichlet–Ferguson diffusion on the space of probability
    measures over a closed Riemannian manifold. <i>Annals of Probability</i>. 2022;50(2):591-648.
    doi:<a href="https://doi.org/10.1214/21-AOP1541">10.1214/21-AOP1541</a>
  apa: Dello Schiavo, L. (2022). The Dirichlet–Ferguson diffusion on the space of
    probability measures over a closed Riemannian manifold. <i>Annals of Probability</i>.
    Institute of Mathematical Statistics. <a href="https://doi.org/10.1214/21-AOP1541">https://doi.org/10.1214/21-AOP1541</a>
  chicago: Dello Schiavo, Lorenzo. “The Dirichlet–Ferguson Diffusion on the Space
    of Probability Measures over a Closed Riemannian Manifold.” <i>Annals of Probability</i>.
    Institute of Mathematical Statistics, 2022. <a href="https://doi.org/10.1214/21-AOP1541">https://doi.org/10.1214/21-AOP1541</a>.
  ieee: L. Dello Schiavo, “The Dirichlet–Ferguson diffusion on the space of probability
    measures over a closed Riemannian manifold,” <i>Annals of Probability</i>, vol.
    50, no. 2. Institute of Mathematical Statistics, pp. 591–648, 2022.
  ista: Dello Schiavo L. 2022. The Dirichlet–Ferguson diffusion on the space of probability
    measures over a closed Riemannian manifold. Annals of Probability. 50(2), 591–648.
  mla: Dello Schiavo, Lorenzo. “The Dirichlet–Ferguson Diffusion on the Space of Probability
    Measures over a Closed Riemannian Manifold.” <i>Annals of Probability</i>, vol.
    50, no. 2, Institute of Mathematical Statistics, 2022, pp. 591–648, doi:<a href="https://doi.org/10.1214/21-AOP1541">10.1214/21-AOP1541</a>.
  short: L. Dello Schiavo, Annals of Probability 50 (2022) 591–648.
date_created: 2022-05-08T22:01:44Z
date_published: 2022-03-01T00:00:00Z
date_updated: 2023-10-17T12:50:24Z
day: '01'
department:
- _id: JaMa
doi: 10.1214/21-AOP1541
ec_funded: 1
external_id:
  arxiv:
  - '1811.11598'
  isi:
  - '000773518500005'
intvolume: '        50'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.1811.11598'
month: '03'
oa: 1
oa_version: Preprint
page: 591-648
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
publication: Annals of Probability
publication_identifier:
  eissn:
  - 2168-894X
  issn:
  - 0091-1798
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Dirichlet–Ferguson diffusion on the space of probability measures over
  a closed Riemannian manifold
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2022'
...
---
_id: '11355'
abstract:
- lang: eng
  text: "Contract-based design is a promising methodology for taming the complexity
    of developing sophisticated systems. A formal contract distinguishes between assumptions,
    which are constraints that the designer of a component puts on the environments
    in which the component can be used safely, and guarantees, which are promises
    that the designer asks from the team that implements the component. A theory of
    formal contracts can be formalized as an interface theory, which supports the
    composition and refinement of both assumptions and guarantees.\r\nAlthough there
    is a rich landscape of contract-based design methods that address functional and
    extra-functional properties, we present the first interface theory that is designed
    for ensuring system-wide security properties. Our framework provides a refinement
    relation and a composition operation that support both incremental design and
    independent implementability. We develop our theory for both stateless and stateful
    interfaces. We illustrate the applicability of our framework with an example inspired
    from the automotive domain."
acknowledgement: This project has received funding from the European Union’s Horizon
  2020 research and innovation programme under grant agreement No 956123 and was funded
  in part by the FWF project W1255-N23 and by the ERC-2020-AdG 101020093.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Ezio
  full_name: Bartocci, Ezio
  last_name: Bartocci
- first_name: Thomas
  full_name: Ferrere, Thomas
  id: 40960E6E-F248-11E8-B48F-1D18A9856A87
  last_name: Ferrere
  orcid: 0000-0001-5199-3143
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Dejan
  full_name: Nickovic, Dejan
  id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
  last_name: Nickovic
- first_name: Ana Oliveira
  full_name: Da Costa, Ana Oliveira
  last_name: Da Costa
citation:
  ama: 'Bartocci E, Ferrere T, Henzinger TA, Nickovic D, Da Costa AO. Information-flow
    interfaces. In: <i>Fundamental Approaches to Software Engineering</i>. Vol 13241.
    Springer Nature; 2022:3-22. doi:<a href="https://doi.org/10.1007/978-3-030-99429-7_1">10.1007/978-3-030-99429-7_1</a>'
  apa: 'Bartocci, E., Ferrere, T., Henzinger, T. A., Nickovic, D., &#38; Da Costa,
    A. O. (2022). Information-flow interfaces. In <i>Fundamental Approaches to Software
    Engineering</i> (Vol. 13241, pp. 3–22). Munich, Germany: Springer Nature. <a href="https://doi.org/10.1007/978-3-030-99429-7_1">https://doi.org/10.1007/978-3-030-99429-7_1</a>'
  chicago: Bartocci, Ezio, Thomas Ferrere, Thomas A Henzinger, Dejan Nickovic, and
    Ana Oliveira Da Costa. “Information-Flow Interfaces.” In <i>Fundamental Approaches
    to Software Engineering</i>, 13241:3–22. Springer Nature, 2022. <a href="https://doi.org/10.1007/978-3-030-99429-7_1">https://doi.org/10.1007/978-3-030-99429-7_1</a>.
  ieee: E. Bartocci, T. Ferrere, T. A. Henzinger, D. Nickovic, and A. O. Da Costa,
    “Information-flow interfaces,” in <i>Fundamental Approaches to Software Engineering</i>,
    Munich, Germany, 2022, vol. 13241, pp. 3–22.
  ista: 'Bartocci E, Ferrere T, Henzinger TA, Nickovic D, Da Costa AO. 2022. Information-flow
    interfaces. Fundamental Approaches to Software Engineering. FASE: Fundamental
    Approaches to Software Engineering, LNCS, vol. 13241, 3–22.'
  mla: Bartocci, Ezio, et al. “Information-Flow Interfaces.” <i>Fundamental Approaches
    to Software Engineering</i>, vol. 13241, Springer Nature, 2022, pp. 3–22, doi:<a
    href="https://doi.org/10.1007/978-3-030-99429-7_1">10.1007/978-3-030-99429-7_1</a>.
  short: E. Bartocci, T. Ferrere, T.A. Henzinger, D. Nickovic, A.O. Da Costa, in:,
    Fundamental Approaches to Software Engineering, Springer Nature, 2022, pp. 3–22.
conference:
  end_date: 2022-04-07
  location: Munich, Germany
  name: 'FASE: Fundamental Approaches to Software Engineering'
  start_date: 2022-04-02
date_created: 2022-05-08T22:01:44Z
date_published: 2022-03-29T00:00:00Z
date_updated: 2023-08-03T07:03:40Z
day: '29'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-030-99429-7_1
ec_funded: 1
external_id:
  isi:
  - '000782393600001'
file:
- access_level: open_access
  checksum: 7f6f860b20b8de2a249e9c1b4eee15cf
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-09T06:52:44Z
  date_updated: 2022-05-09T06:52:44Z
  file_id: '11357'
  file_name: 2022_LNCS_Bartocci.pdf
  file_size: 479146
  relation: main_file
  success: 1
file_date_updated: 2022-05-09T06:52:44Z
has_accepted_license: '1'
intvolume: '     13241'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 3-22
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: Fundamental Approaches to Software Engineering
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783030994280'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Information-flow interfaces
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13241
year: '2022'
...
---
_id: '11356'
acknowledgement: This work was supported by the National Science Fund for Distinguished
  Young Scholars (51925101), National Key Research and Development Program of China
  (2018YFA0702100), 111 Project (B17002), and Lise Meitner Project (M2889-N).
article_processing_charge: No
article_type: letter_note
author:
- first_name: Cheng
  full_name: Chang, Cheng
  id: 9E331C2E-9F27-11E9-AE48-5033E6697425
  last_name: Chang
  orcid: 0000-0002-9515-4277
- first_name: Bingchao
  full_name: Qin, Bingchao
  last_name: Qin
- first_name: Lizhong
  full_name: Su, Lizhong
  last_name: Su
- first_name: Li Dong
  full_name: Zhao, Li Dong
  last_name: Zhao
citation:
  ama: Chang C, Qin B, Su L, Zhao LD. Distinct electron and hole transports in SnSe
    crystals. <i>Science Bulletin</i>. 2022;67(11):1105-1107. doi:<a href="https://doi.org/10.1016/j.scib.2022.04.007">10.1016/j.scib.2022.04.007</a>
  apa: Chang, C., Qin, B., Su, L., &#38; Zhao, L. D. (2022). Distinct electron and
    hole transports in SnSe crystals. <i>Science Bulletin</i>. Elsevier. <a href="https://doi.org/10.1016/j.scib.2022.04.007">https://doi.org/10.1016/j.scib.2022.04.007</a>
  chicago: Chang, Cheng, Bingchao Qin, Lizhong Su, and Li Dong Zhao. “Distinct Electron
    and Hole Transports in SnSe Crystals.” <i>Science Bulletin</i>. Elsevier, 2022.
    <a href="https://doi.org/10.1016/j.scib.2022.04.007">https://doi.org/10.1016/j.scib.2022.04.007</a>.
  ieee: C. Chang, B. Qin, L. Su, and L. D. Zhao, “Distinct electron and hole transports
    in SnSe crystals,” <i>Science Bulletin</i>, vol. 67, no. 11. Elsevier, pp. 1105–1107,
    2022.
  ista: Chang C, Qin B, Su L, Zhao LD. 2022. Distinct electron and hole transports
    in SnSe crystals. Science Bulletin. 67(11), 1105–1107.
  mla: Chang, Cheng, et al. “Distinct Electron and Hole Transports in SnSe Crystals.”
    <i>Science Bulletin</i>, vol. 67, no. 11, Elsevier, 2022, pp. 1105–07, doi:<a
    href="https://doi.org/10.1016/j.scib.2022.04.007">10.1016/j.scib.2022.04.007</a>.
  short: C. Chang, B. Qin, L. Su, L.D. Zhao, Science Bulletin 67 (2022) 1105–1107.
date_created: 2022-05-08T22:01:44Z
date_published: 2022-06-15T00:00:00Z
date_updated: 2023-08-03T07:04:10Z
day: '15'
department:
- _id: MaIb
doi: 10.1016/j.scib.2022.04.007
external_id:
  isi:
  - '000835291100006'
intvolume: '        67'
isi: 1
issue: '11'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.scib.2022.04.007
month: '06'
oa: 1
oa_version: Published Version
page: 1105-1107
project:
- _id: 9B8804FC-BA93-11EA-9121-9846C619BF3A
  grant_number: M02889
  name: Bottom-up Engineering for Thermoelectric Applications
publication: Science Bulletin
publication_identifier:
  eissn:
  - 2095-9281
  issn:
  - 2095-9273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Distinct electron and hole transports in SnSe crystals
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 67
year: '2022'
...
---
_id: '11362'
abstract:
- lang: eng
  text: "Deep learning has enabled breakthroughs in challenging computing problems
    and has emerged as the standard problem-solving tool for computer vision and natural
    language processing tasks.\r\nOne exception to this trend is safety-critical tasks
    where robustness and resilience requirements contradict the black-box nature of
    neural networks. \r\nTo deploy deep learning methods for these tasks, it is vital
    to provide guarantees on neural network agents' safety and robustness criteria.
    \r\nThis can be achieved by developing formal verification methods to verify the
    safety and robustness properties of neural networks.\r\n\r\nOur goal is to design,
    develop and assess safety verification methods for neural networks to improve
    their reliability and trustworthiness in real-world applications.\r\nThis thesis
    establishes techniques for the verification of compressed and adversarially trained
    models as well as the design of novel neural networks for verifiably safe decision-making.\r\n\r\nFirst,
    we establish the problem of verifying quantized neural networks. Quantization
    is a technique that trades numerical precision for the computational efficiency
    of running a neural network and is widely adopted in industry.\r\nWe show that
    neglecting the reduced precision when verifying a neural network can lead to wrong
    conclusions about the robustness and safety of the network, highlighting that
    novel techniques for quantized network verification are necessary. We introduce
    several bit-exact verification methods explicitly designed for quantized neural
    networks and experimentally confirm on realistic networks that the network's robustness
    and other formal properties are affected by the quantization.\r\n\r\nFurthermore,
    we perform a case study providing evidence that adversarial training, a standard
    technique for making neural networks more robust, has detrimental effects on the
    network's performance. This robustness-accuracy tradeoff has been studied before
    regarding the accuracy obtained on classification datasets where each data point
    is independent of all other data points. On the other hand, we investigate the
    tradeoff empirically in robot learning settings where a both, a high accuracy
    and a high robustness, are desirable.\r\nOur results suggest that the negative
    side-effects of adversarial training outweigh its robustness benefits in practice.\r\n\r\nFinally,
    we consider the problem of verifying safety when running a Bayesian neural network
    policy in a feedback loop with systems over the infinite time horizon. Bayesian
    neural networks are probabilistic models for learning uncertainties in the data
    and are therefore often used on robotic and healthcare applications where data
    is inherently stochastic.\r\nWe introduce a method for recalibrating Bayesian
    neural networks so that they yield probability distributions over safe decisions
    only.\r\nOur method learns a safety certificate that guarantees safety over the
    infinite time horizon to determine which decisions are safe in every possible
    state of the system.\r\nWe demonstrate the effectiveness of our approach on a
    series of reinforcement learning benchmarks."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Mathias
  full_name: Lechner, Mathias
  id: 3DC22916-F248-11E8-B48F-1D18A9856A87
  last_name: Lechner
citation:
  ama: Lechner M. Learning verifiable representations. 2022. doi:<a href="https://doi.org/10.15479/at:ista:11362">10.15479/at:ista:11362</a>
  apa: Lechner, M. (2022). <i>Learning verifiable representations</i>. Institute of
    Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:11362">https://doi.org/10.15479/at:ista:11362</a>
  chicago: Lechner, Mathias. “Learning Verifiable Representations.” Institute of Science
    and Technology Austria, 2022. <a href="https://doi.org/10.15479/at:ista:11362">https://doi.org/10.15479/at:ista:11362</a>.
  ieee: M. Lechner, “Learning verifiable representations,” Institute of Science and
    Technology Austria, 2022.
  ista: Lechner M. 2022. Learning verifiable representations. Institute of Science
    and Technology Austria.
  mla: Lechner, Mathias. <i>Learning Verifiable Representations</i>. Institute of
    Science and Technology Austria, 2022, doi:<a href="https://doi.org/10.15479/at:ista:11362">10.15479/at:ista:11362</a>.
  short: M. Lechner, Learning Verifiable Representations, Institute of Science and
    Technology Austria, 2022.
date_created: 2022-05-12T07:14:01Z
date_published: 2022-05-12T00:00:00Z
date_updated: 2025-07-14T09:10:11Z
day: '12'
ddc:
- '004'
degree_awarded: PhD
department:
- _id: GradSch
- _id: ToHe
doi: 10.15479/at:ista:11362
ec_funded: 1
file:
- access_level: closed
  checksum: 8eefa9c7c10ca7e1a2ccdd731962a645
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  creator: mlechner
  date_created: 2022-05-16T08:02:28Z
  date_updated: 2022-05-17T15:19:39Z
  file_id: '11382'
  file_name: thesis_main-a2.pdf
  file_size: 2732536
  relation: main_file
file_date_updated: 2022-05-17T15:19:39Z
has_accepted_license: '1'
keyword:
- neural networks
- verification
- machine learning
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '124'
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: The Wittgenstein Prize
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication_identifier:
  isbn:
  - 978-3-99078-017-6
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '11366'
    relation: part_of_dissertation
    status: public
  - id: '7808'
    relation: part_of_dissertation
    status: public
  - id: '10666'
    relation: part_of_dissertation
    status: public
  - id: '10665'
    relation: part_of_dissertation
    status: public
  - id: '10667'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
title: Learning verifiable representations
tmp:
  image: /image/cc_by_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nd/4.0/legalcode
  name: Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)
  short: CC BY-ND (4.0)
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2022'
...
---
_id: '11366'
abstract:
- lang: eng
  text: "Adversarial training (i.e., training on adversarially perturbed input data)
    is a well-studied method for making neural networks robust to potential adversarial
    attacks during inference. However, the improved robustness does not\r\ncome for
    free but rather is accompanied by a decrease in overall model accuracy and performance.
    Recent work has shown that, in practical robot learning applications, the effects
    of adversarial training do not pose a fair trade-off\r\nbut inflict a net loss
    when measured in holistic robot performance. This work revisits the robustness-accuracy
    trade-off in robot learning by systematically analyzing if recent advances in
    robust training methods and theory in\r\nconjunction with adversarial robot learning
    can make adversarial training suitable for real-world robot applications. We evaluate
    a wide variety of robot learning tasks ranging from autonomous driving in a high-fidelity
    environment\r\namenable to sim-to-real deployment, to mobile robot gesture recognition.
    Our results demonstrate that, while these techniques make incremental improvements
    on the trade-off on a relative scale, the negative side-effects caused by\r\nadversarial
    training still outweigh the improvements by an order of magnitude. We conclude
    that more substantial advances in robust learning methods are necessary before
    they can benefit robot learning tasks in practice."
acknowledgement: "This work was supported in parts by the ERC-2020-AdG 101020093,
  National Science Foundation (NSF), and JP\r\nMorgan Graduate Fellowships. We thank
  Christoph Lampert for inspiring this work.\r\n"
article_number: '2204.07373'
article_processing_charge: No
arxiv: 1
author:
- first_name: Mathias
  full_name: Lechner, Mathias
  id: 3DC22916-F248-11E8-B48F-1D18A9856A87
  last_name: Lechner
- first_name: Alexander
  full_name: Amini, Alexander
  last_name: Amini
- first_name: Daniela
  full_name: Rus, Daniela
  last_name: Rus
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
citation:
  ama: Lechner M, Amini A, Rus D, Henzinger TA. Revisiting the adversarial robustness-accuracy
    tradeoff in robot learning. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2204.07373">10.48550/arXiv.2204.07373</a>
  apa: Lechner, M., Amini, A., Rus, D., &#38; Henzinger, T. A. (n.d.). Revisiting
    the adversarial robustness-accuracy tradeoff in robot learning. <i>arXiv</i>.
    <a href="https://doi.org/10.48550/arXiv.2204.07373">https://doi.org/10.48550/arXiv.2204.07373</a>
  chicago: Lechner, Mathias, Alexander Amini, Daniela Rus, and Thomas A Henzinger.
    “Revisiting the Adversarial Robustness-Accuracy Tradeoff in Robot Learning.” <i>ArXiv</i>,
    n.d. <a href="https://doi.org/10.48550/arXiv.2204.07373">https://doi.org/10.48550/arXiv.2204.07373</a>.
  ieee: M. Lechner, A. Amini, D. Rus, and T. A. Henzinger, “Revisiting the adversarial
    robustness-accuracy tradeoff in robot learning,” <i>arXiv</i>. .
  ista: Lechner M, Amini A, Rus D, Henzinger TA. Revisiting the adversarial robustness-accuracy
    tradeoff in robot learning. arXiv, 2204.07373.
  mla: Lechner, Mathias, et al. “Revisiting the Adversarial Robustness-Accuracy Tradeoff
    in Robot Learning.” <i>ArXiv</i>, 2204.07373, doi:<a href="https://doi.org/10.48550/arXiv.2204.07373">10.48550/arXiv.2204.07373</a>.
  short: M. Lechner, A. Amini, D. Rus, T.A. Henzinger, ArXiv (n.d.).
date_created: 2022-05-12T13:20:17Z
date_published: 2022-04-15T00:00:00Z
date_updated: 2023-08-01T13:36:50Z
day: '15'
department:
- _id: ToHe
doi: 10.48550/arXiv.2204.07373
ec_funded: 1
external_id:
  arxiv:
  - '2204.07373'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2204.07373
month: '04'
oa: 1
oa_version: Preprint
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: arXiv
publication_status: submitted
related_material:
  record:
  - id: '11362'
    relation: dissertation_contains
    status: public
  - id: '12704'
    relation: later_version
    status: public
status: public
title: Revisiting the adversarial robustness-accuracy tradeoff in robot learning
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '11373'
abstract:
- lang: eng
  text: The actin-homologue FtsA is essential for E. coli cell division, as it links
    FtsZ filaments in the Z-ring to transmembrane proteins. FtsA is thought to initiate
    cell constriction by switching from an inactive polymeric to an active monomeric
    conformation, which recruits downstream proteins and stabilizes the Z-ring. However,
    direct biochemical evidence for this mechanism is missing. Here, we use reconstitution
    experiments and quantitative fluorescence microscopy to study divisome activation
    in vitro. By comparing wild-type FtsA with FtsA R286W, we find that this hyperactive
    mutant outperforms FtsA WT in replicating FtsZ treadmilling dynamics, FtsZ filament
    stabilization and recruitment of FtsN. We could attribute these differences to
    a faster exchange and denser packing of FtsA R286W below FtsZ filaments. Using
    FRET microscopy, we also find that FtsN binding promotes FtsA self-interaction.
    We propose that in the active divisome FtsA and FtsN exist as a dynamic copolymer
    that follows treadmilling filaments of FtsZ.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
acknowledgement: We acknowledge members of the Loose laboratory at IST Austria for
  helpful discussions—in particular L. Lindorfer for his assistance with cloning and
  purifications. We thank J. Löwe and T. Nierhaus (MRC-LMB Cambridge, UK) for sharing
  unpublished work and helpful discussions, as well as D. Vavylonis and D. Rutkowski
  (Lehigh University, Bethlehem, PA, USA) and S. Martin (University of Lausanne, Switzerland)
  for sharing their code for FRAP analysis. We are also thankful for the support by
  the Scientific Service Units (SSU) of IST Austria through resources provided by
  the Imaging and Optics Facility (IOF) and the Lab Support Facility (LSF). This work
  was supported by the European Research Council through grant ERC 2015-StG-679239
  and by the Austrian Science Fund (FWF) StandAlone P34607 to M.L. and HFSP LT 000824/2016-L4
  to N.B. For the purpose of open access, we have applied a CC BY public copyright
  licence to any Author Accepted Manuscript version arising from this submission.
article_number: '2635'
article_processing_charge: No
article_type: original
author:
- first_name: Philipp
  full_name: Radler, Philipp
  id: 40136C2A-F248-11E8-B48F-1D18A9856A87
  last_name: Radler
  orcid: '0000-0001-9198-2182 '
- first_name: Natalia S.
  full_name: Baranova, Natalia S.
  id: 38661662-F248-11E8-B48F-1D18A9856A87
  last_name: Baranova
  orcid: 0000-0002-3086-9124
- first_name: Paulo R
  full_name: Dos Santos Caldas, Paulo R
  id: 38FCDB4C-F248-11E8-B48F-1D18A9856A87
  last_name: Dos Santos Caldas
  orcid: 0000-0001-6730-4461
- first_name: Christoph M
  full_name: Sommer, Christoph M
  id: 4DF26D8C-F248-11E8-B48F-1D18A9856A87
  last_name: Sommer
  orcid: 0000-0003-1216-9105
- first_name: Maria D
  full_name: Lopez Pelegrin, Maria D
  id: 319AA9CE-F248-11E8-B48F-1D18A9856A87
  last_name: Lopez Pelegrin
- first_name: David
  full_name: Michalik, David
  id: B9577E20-AA38-11E9-AC9A-0930E6697425
  last_name: Michalik
- first_name: Martin
  full_name: Loose, Martin
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
citation:
  ama: Radler P, Baranova NS, Dos Santos Caldas PR, et al. In vitro reconstitution
    of Escherichia coli divisome activation. <i>Nature Communications</i>. 2022;13.
    doi:<a href="https://doi.org/10.1038/s41467-022-30301-y">10.1038/s41467-022-30301-y</a>
  apa: Radler, P., Baranova, N. S., Dos Santos Caldas, P. R., Sommer, C. M., Lopez
    Pelegrin, M. D., Michalik, D., &#38; Loose, M. (2022). In vitro reconstitution
    of Escherichia coli divisome activation. <i>Nature Communications</i>. Springer
    Nature. <a href="https://doi.org/10.1038/s41467-022-30301-y">https://doi.org/10.1038/s41467-022-30301-y</a>
  chicago: Radler, Philipp, Natalia S. Baranova, Paulo R Dos Santos Caldas, Christoph
    M Sommer, Maria D Lopez Pelegrin, David Michalik, and Martin Loose. “In Vitro
    Reconstitution of Escherichia Coli Divisome Activation.” <i>Nature Communications</i>.
    Springer Nature, 2022. <a href="https://doi.org/10.1038/s41467-022-30301-y">https://doi.org/10.1038/s41467-022-30301-y</a>.
  ieee: P. Radler <i>et al.</i>, “In vitro reconstitution of Escherichia coli divisome
    activation,” <i>Nature Communications</i>, vol. 13. Springer Nature, 2022.
  ista: Radler P, Baranova NS, Dos Santos Caldas PR, Sommer CM, Lopez Pelegrin MD,
    Michalik D, Loose M. 2022. In vitro reconstitution of Escherichia coli divisome
    activation. Nature Communications. 13, 2635.
  mla: Radler, Philipp, et al. “In Vitro Reconstitution of Escherichia Coli Divisome
    Activation.” <i>Nature Communications</i>, vol. 13, 2635, Springer Nature, 2022,
    doi:<a href="https://doi.org/10.1038/s41467-022-30301-y">10.1038/s41467-022-30301-y</a>.
  short: P. Radler, N.S. Baranova, P.R. Dos Santos Caldas, C.M. Sommer, M.D. Lopez
    Pelegrin, D. Michalik, M. Loose, Nature Communications 13 (2022).
date_created: 2022-05-13T09:06:28Z
date_published: 2022-05-12T00:00:00Z
date_updated: 2024-02-21T12:35:18Z
day: '12'
ddc:
- '570'
department:
- _id: MaLo
doi: 10.1038/s41467-022-30301-y
ec_funded: 1
external_id:
  isi:
  - '000795171100037'
file:
- access_level: open_access
  checksum: 5af863ee1b95a0710f6ee864d68dc7a6
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-13T09:10:51Z
  date_updated: 2022-05-13T09:10:51Z
  file_id: '11374'
  file_name: 2022_NatureCommunications_Radler.pdf
  file_size: 6945191
  relation: main_file
  success: 1
file_date_updated: 2022-05-13T09:10:51Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
keyword:
- General Physics and Astronomy
- General Biochemistry
- Genetics and Molecular Biology
- General Chemistry
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: 2595697A-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '679239'
  name: Self-Organization of the Bacterial Cell
- _id: fc38323b-9c52-11eb-aca3-ff8afb4a011d
  grant_number: P34607
  name: "Understanding bacterial cell division by in vitro\r\nreconstitution"
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s41467-022-34485-1
  record:
  - id: '14280'
    relation: dissertation_contains
    status: public
  - id: '10934'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: In vitro reconstitution of Escherichia coli divisome activation
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13
year: '2022'
...
---
_id: '11379'
abstract:
- lang: eng
  text: Bernal-stacked multilayer graphene is a versatile platform to explore quantum
    transport phenomena and interaction physics due to its exceptional tunability
    via electrostatic gating. For instance, upon applying a perpendicular electric
    field, its band structure exhibits several off-center Dirac points (so-called
    Dirac gullies) in each valley. Here, the formation of Dirac gullies and the interaction-induced
    breakdown of gully coherence is explored via magnetotransport measurements in
    high-quality Bernal-stacked (ABA) trilayer graphene. At zero magnetic field, multiple
    Lifshitz transitions indicating the formation of Dirac gullies are identified.
    In the quantum Hall regime, the emergence of Dirac gullies is evident as an increase
    in Landau level degeneracy. When tuning both electric and magnetic fields, electron–electron
    interactions can be controllably enhanced until, beyond critical electric and
    magnetic fields, the gully degeneracy is eventually lifted. The arising correlated
    ground state is consistent with a previously predicted nematic phase that spontaneously
    breaks the rotational gully symmetry.
acknowledgement: "We acknowledge funding from the Center for Nanoscience (CeNS) and
  by the Deutsche\r\nForschungsgemeinschaft (DFG, German Research Foundation) under
  Germany’s Excellence Strategy-EXC-2111-390814868 (MCQST). K.W. and T.T. acknowledge
  support from the Elemental Strategy Initiative conducted by the MEXT, Japan (Grant
  Number PMXP0112101001) and JSPS KAKENHI (Grant Numbers 19H05790 and JP20H00354)."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Felix
  full_name: Winterer, Felix
  last_name: Winterer
- first_name: Anna M.
  full_name: Seiler, Anna M.
  last_name: Seiler
- first_name: Areg
  full_name: Ghazaryan, Areg
  id: 4AF46FD6-F248-11E8-B48F-1D18A9856A87
  last_name: Ghazaryan
  orcid: 0000-0001-9666-3543
- first_name: Fabian R.
  full_name: Geisenhof, Fabian R.
  last_name: Geisenhof
- first_name: Kenji
  full_name: Watanabe, Kenji
  last_name: Watanabe
- first_name: Takashi
  full_name: Taniguchi, Takashi
  last_name: Taniguchi
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: R. Thomas
  full_name: Weitz, R. Thomas
  last_name: Weitz
citation:
  ama: Winterer F, Seiler AM, Ghazaryan A, et al. Spontaneous gully-polarized quantum
    hall states in ABA trilayer graphene. <i>Nano Letters</i>. 2022;22(8):3317-3322.
    doi:<a href="https://doi.org/10.1021/acs.nanolett.2c00435">10.1021/acs.nanolett.2c00435</a>
  apa: Winterer, F., Seiler, A. M., Ghazaryan, A., Geisenhof, F. R., Watanabe, K.,
    Taniguchi, T., … Weitz, R. T. (2022). Spontaneous gully-polarized quantum hall
    states in ABA trilayer graphene. <i>Nano Letters</i>. American Chemical Society.
    <a href="https://doi.org/10.1021/acs.nanolett.2c00435">https://doi.org/10.1021/acs.nanolett.2c00435</a>
  chicago: Winterer, Felix, Anna M. Seiler, Areg Ghazaryan, Fabian R. Geisenhof, Kenji
    Watanabe, Takashi Taniguchi, Maksym Serbyn, and R. Thomas Weitz. “Spontaneous
    Gully-Polarized Quantum Hall States in ABA Trilayer Graphene.” <i>Nano Letters</i>.
    American Chemical Society, 2022. <a href="https://doi.org/10.1021/acs.nanolett.2c00435">https://doi.org/10.1021/acs.nanolett.2c00435</a>.
  ieee: F. Winterer <i>et al.</i>, “Spontaneous gully-polarized quantum hall states
    in ABA trilayer graphene,” <i>Nano Letters</i>, vol. 22, no. 8. American Chemical
    Society, pp. 3317–3322, 2022.
  ista: Winterer F, Seiler AM, Ghazaryan A, Geisenhof FR, Watanabe K, Taniguchi T,
    Serbyn M, Weitz RT. 2022. Spontaneous gully-polarized quantum hall states in ABA
    trilayer graphene. Nano Letters. 22(8), 3317–3322.
  mla: Winterer, Felix, et al. “Spontaneous Gully-Polarized Quantum Hall States in
    ABA Trilayer Graphene.” <i>Nano Letters</i>, vol. 22, no. 8, American Chemical
    Society, 2022, pp. 3317–22, doi:<a href="https://doi.org/10.1021/acs.nanolett.2c00435">10.1021/acs.nanolett.2c00435</a>.
  short: F. Winterer, A.M. Seiler, A. Ghazaryan, F.R. Geisenhof, K. Watanabe, T. Taniguchi,
    M. Serbyn, R.T. Weitz, Nano Letters 22 (2022) 3317–3322.
date_created: 2022-05-15T22:01:41Z
date_published: 2022-04-27T00:00:00Z
date_updated: 2023-08-03T07:12:45Z
day: '27'
department:
- _id: MaSe
doi: 10.1021/acs.nanolett.2c00435
external_id:
  arxiv:
  - '2109.00556'
  isi:
  - '000809056900019'
intvolume: '        22'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2109.00556'
month: '04'
oa: 1
oa_version: Preprint
page: 3317-3322
publication: Nano Letters
publication_identifier:
  eissn:
  - '15306992'
  issn:
  - '15306984'
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Spontaneous gully-polarized quantum hall states in ABA trilayer graphene
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 22
year: '2022'
...
---
_id: '11388'
abstract:
- lang: eng
  text: "In evolve and resequence experiments, a population is sequenced, subjected
    to selection and\r\nthen sequenced again, so that genetic changes before and after
    selection can be observed at\r\nthe genetic level. Here, I use these studies to
    better understand the genetic basis of complex\r\ntraits - traits which depend
    on more than a few genes.\r\nIn the first chapter, I discuss the first evolve
    and resequence experiment, in which a population\r\nof mice, the so-called \"Longshanks\"
    mice, were selected for tibia length while their body mass\r\nwas kept constant.
    The full pedigree is known. We observed a selection response on all\r\nchromosomes
    and used the infinitesimal model with linkage, a model which assumes an infinite\r\nnumber
    of genes with infinitesimally small effect sizes, as a null model. Results implied
    a very\r\npolygenic basis with a few loci of major effect standing out and changing
    in parallel. There\r\nwas large variability between the different chromosomes
    in this study, probably due to LD.\r\nIn chapter two, I go on to discuss the impact
    of LD, on the variability in an allele-frequency\r\nbased summary statistic, giving
    an equation based on the initial allele frequencies, average\r\npairwise LD, and
    the first four moments of the haplotype block copy number distribution. I\r\ndescribe
    this distribution by referring back to the founder generation. I then demonstrate\r\nhow
    to infer selection via a maximum likelihood scheme on the example of a single
    locus and\r\ndiscuss how to extend this to more realistic scenarios.\r\nIn chapter
    three, I discuss the second evolve and resequence experiment, in which a small\r\npopulation
    of Drosophila melanogaster was selected for increased pupal case size over 6\r\ngenerations.
    The experiment was highly replicated with 27 lines selected within family and
    a\r\nknown pedigree. We observed a phenotypic selection response of over one standard
    deviation.\r\nI describe the patterns in allele frequency data, including allele
    frequency changes and patterns\r\nof heterozygosity, and give ideas for future
    work."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Stefanie
  full_name: Belohlavy, Stefanie
  id: 43FE426A-F248-11E8-B48F-1D18A9856A87
  last_name: Belohlavy
  orcid: 0000-0002-9849-498X
citation:
  ama: Belohlavy S. The genetic basis of complex traits studied via analysis of evolve
    and resequence experiments. 2022. doi:<a href="https://doi.org/10.15479/at:ista:11388">10.15479/at:ista:11388</a>
  apa: Belohlavy, S. (2022). <i>The genetic basis of complex traits studied via analysis
    of evolve and resequence experiments</i>. Institute of Science and Technology
    Austria. <a href="https://doi.org/10.15479/at:ista:11388">https://doi.org/10.15479/at:ista:11388</a>
  chicago: Belohlavy, Stefanie. “The Genetic Basis of Complex Traits Studied via Analysis
    of Evolve and Resequence Experiments.” Institute of Science and Technology Austria,
    2022. <a href="https://doi.org/10.15479/at:ista:11388">https://doi.org/10.15479/at:ista:11388</a>.
  ieee: S. Belohlavy, “The genetic basis of complex traits studied via analysis of
    evolve and resequence experiments,” Institute of Science and Technology Austria,
    2022.
  ista: Belohlavy S. 2022. The genetic basis of complex traits studied via analysis
    of evolve and resequence experiments. Institute of Science and Technology Austria.
  mla: Belohlavy, Stefanie. <i>The Genetic Basis of Complex Traits Studied via Analysis
    of Evolve and Resequence Experiments</i>. Institute of Science and Technology
    Austria, 2022, doi:<a href="https://doi.org/10.15479/at:ista:11388">10.15479/at:ista:11388</a>.
  short: S. Belohlavy, The Genetic Basis of Complex Traits Studied via Analysis of
    Evolve and Resequence Experiments, Institute of Science and Technology Austria,
    2022.
date_created: 2022-05-16T16:49:18Z
date_published: 2022-05-18T00:00:00Z
date_updated: 2023-08-29T06:41:51Z
day: '18'
ddc:
- '576'
degree_awarded: PhD
department:
- _id: GradSch
- _id: NiBa
doi: 10.15479/at:ista:11388
file:
- access_level: open_access
  checksum: 4d75e6a619df7e8a9d6e840aee182380
  content_type: application/pdf
  creator: sbelohla
  date_created: 2022-05-19T13:03:13Z
  date_updated: 2023-05-20T22:30:03Z
  embargo: 2023-05-19
  file_id: '11398'
  file_name: thesis_sb_final_pdfa.pdf
  file_size: 8247240
  relation: main_file
- access_level: closed
  checksum: 7a5d8b6dd0ca00784f860075b0a7d8f0
  content_type: application/x-zip-compressed
  creator: sbelohla
  date_created: 2022-05-19T13:07:47Z
  date_updated: 2023-05-20T22:30:03Z
  embargo_to: open_access
  file_id: '11399'
  file_name: thesis_sb_final.zip
  file_size: 7094
  relation: source_file
file_date_updated: 2023-05-20T22:30:03Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '98'
publication_identifier:
  isbn:
  - 978-3-99078-018-3
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '6713'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
title: The genetic basis of complex traits studied via analysis of evolve and resequence
  experiments
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2022'
...
---
_id: '11393'
abstract:
- lang: eng
  text: "AMPA receptors (AMPARs) mediate fast excitatory neurotransmission and their
    role is\r\nimplicated in complex processes such as learning and memory and various
    neurological\r\ndiseases. These receptors are composed of different subunits and
    the subunit composition can\r\naffect channel properties, receptor trafficking
    and interaction with other associated proteins.\r\nUsing the high sensitivity
    SDS-digested freeze-fracture replica labeling (SDS-FRL) for\r\nelectron microscopy
    I investigated the number, density, and localization of AMPAR subunits,\r\nGluA1,
    GluA2, GluA3, and GluA1-3 (panAMPA) in pyramidal cells in the CA1 area of mouse\r\nhippocampus.
    I have found that the immunogold labeling for all of these subunits in the\r\npostsynaptic
    sites was highest in stratum radiatum and lowest in stratum lacunosummoleculare.
    The labeling density for the all subunits in the extrasynaptic sites showed a
    gradual\r\nincrease from the pyramidal cell soma towards the distal part of stratum
    radiatum. The densities\r\nof extrasynaptic GluA1, GluA2 and panAMPA labeling
    reached 10-15% of synaptic densities,\r\nwhile the ratio of extrasynaptic labeling
    for GluA3 was significantly lower compared than those\r\nfor other subunits. The
    labeling patterns for GluA1, GluA2 and GluA1-3 are similar and their\r\ndensities
    were higher in the periphery than center of synapses. In contrast, the GluA3-\r\ncontaining
    receptors were more centrally localized compared to the GluA1- and GluA2-\r\ncontaining
    receptors.\r\nThe hippocampus plays a central role in learning and memory. Contextual
    learning has been\r\nshown to require the delivery of AMPA receptors to CA1 synapses
    in the dorsal hippocampus.\r\nHowever, proximodistal heterogeneity of this plasticity
    and particular contribution of different\r\nAMPA receptor subunits are not fully
    understood. By combining inhibitory avoidance task, a\r\nhippocampus-dependent
    contextual fear-learning paradigm, with SDS-FRL, I have revealed an\r\nincrease
    in synaptic density specific to GluA1-containing AMPA receptors in the CA1 area.\r\nThe
    intrasynaptic distribution of GluA1 also changed from the periphery to center-preferred\r\npattern.
    Furthermore, this synaptic plasticity was evident selectively in stratum radiatum
    but\r\nnot stratum oriens, and in the CA1 subregion proximal but not distal to
    CA2. These findings\r\nfurther contribute to our understanding of how specific
    hippocampal subregions and AMPA\r\nreceptor subunits are involved in physiological
    learning.\r\nAlthough the immunolabeling results above shed light on subunit-specific
    plasticity in\r\nAMPAR distribution, no tools to visualize and study the subunit
    composition at the single\r\nchannel level in situ have been available. Electron
    microscopy with conventional immunogold\r\nlabeling approaches has limitations
    in the single channel analysis because of the large size of\r\nantibodies and
    steric hindrance hampering multiple subunit labeling of single channels. I\r\nmanaged
    to develop a new chemical labeling system using a short peptide tag and small\r\nsynthetic
    probes, which form specific covalent bond with a cysteine residue in the tag fused
    to\r\nproteins of interest (reactive tag system). I additionally made substantial
    progress into adapting\r\nthis system for AMPA receptor subunits."
acknowledged_ssus:
- _id: EM-Fac
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Marijo
  full_name: Jevtic, Marijo
  id: 4BE3BC94-F248-11E8-B48F-1D18A9856A87
  last_name: Jevtic
citation:
  ama: Jevtic M. Contextual fear learning induced changes in AMPA receptor subtypes
    along the proximodistal axis in dorsal hippocampus. 2022. doi:<a href="https://doi.org/10.15479/at:ista:11393">10.15479/at:ista:11393</a>
  apa: Jevtic, M. (2022). <i>Contextual fear learning induced changes in AMPA receptor
    subtypes along the proximodistal axis in dorsal hippocampus</i>. Institute of
    Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:11393">https://doi.org/10.15479/at:ista:11393</a>
  chicago: Jevtic, Marijo. “Contextual Fear Learning Induced Changes in AMPA Receptor
    Subtypes along the Proximodistal Axis in Dorsal Hippocampus.” Institute of Science
    and Technology Austria, 2022. <a href="https://doi.org/10.15479/at:ista:11393">https://doi.org/10.15479/at:ista:11393</a>.
  ieee: M. Jevtic, “Contextual fear learning induced changes in AMPA receptor subtypes
    along the proximodistal axis in dorsal hippocampus,” Institute of Science and
    Technology Austria, 2022.
  ista: Jevtic M. 2022. Contextual fear learning induced changes in AMPA receptor
    subtypes along the proximodistal axis in dorsal hippocampus. Institute of Science
    and Technology Austria.
  mla: Jevtic, Marijo. <i>Contextual Fear Learning Induced Changes in AMPA Receptor
    Subtypes along the Proximodistal Axis in Dorsal Hippocampus</i>. Institute of
    Science and Technology Austria, 2022, doi:<a href="https://doi.org/10.15479/at:ista:11393">10.15479/at:ista:11393</a>.
  short: M. Jevtic, Contextual Fear Learning Induced Changes in AMPA Receptor Subtypes
    along the Proximodistal Axis in Dorsal Hippocampus, Institute of Science and Technology
    Austria, 2022.
date_created: 2022-05-17T08:57:41Z
date_published: 2022-05-16T00:00:00Z
date_updated: 2023-09-07T14:53:44Z
day: '16'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: GradSch
- _id: RySh
doi: 10.15479/at:ista:11393
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  date_updated: 2023-05-17T22:30:03Z
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file_date_updated: 2023-05-17T22:30:03Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '108'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '7391'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
title: Contextual fear learning induced changes in AMPA receptor subtypes along the
  proximodistal axis in dorsal hippocampus
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2022'
...
---
_id: '11400'
abstract:
- lang: eng
  text: By varying the concentration of molecules in the cytoplasm or on the membrane,
    cells can induce the formation of condensates and liquid droplets, similar to
    phase separation. Their thermodynamics, much studied, depends on the mutual interactions
    between microscopic constituents. Here, we focus on the kinetics and size control
    of 2D clusters, forming on membranes. Using molecular dynamics of patchy colloids,
    we model a system of two species of proteins, giving origin to specific heterotypic
    bonds. We find that concentrations, together with valence and bond strength, control
    both the size and the growth time rate of the clusters. In particular, if one
    species is in large excess, it gradually saturates the binding sites of the other
    species; the system then becomes kinetically arrested and cluster coarsening slows
    down or stops, thus yielding effective size selection. This phenomenology is observed
    both in solid and fluid clusters, which feature additional generic homotypic interactions
    and are reminiscent of the ones observed on biological membranes.
acknowledgement: "The authors thank Longhui Zeng and Xiaolei Su (Yale University)
  for bringing the topic to their attention and for useful comments. This work has
  received funding from the European Research Council under the European Union’s Horizon\r\n2020
  research and innovation program (ERC Grant No. 802960 and Marie Skłodowska-Curie
  Grant No. 101034413). The authors are grateful to the UK Materials and Molecular
  Modeling Hub for computational resources, which is partially funded by EPSRC (Grant
  Nos. EP/P020194/1 and EP/T022213/1). The authors acknowledge support from ISTA and
  from the Royal Society (Grant No. UF160266)."
article_number: '194902'
article_processing_charge: No
article_type: original
author:
- first_name: Ivan
  full_name: Palaia, Ivan
  id: 9c805cd2-4b75-11ec-a374-db6dd0ed57fa
  last_name: Palaia
  orcid: ' 0000-0002-8843-9485 '
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
citation:
  ama: Palaia I, Šarić A. Controlling cluster size in 2D phase-separating binary mixtures
    with specific interactions. <i>The Journal of Chemical Physics</i>. 2022;156(19).
    doi:<a href="https://doi.org/10.1063/5.0087769">10.1063/5.0087769</a>
  apa: Palaia, I., &#38; Šarić, A. (2022). Controlling cluster size in 2D phase-separating
    binary mixtures with specific interactions. <i>The Journal of Chemical Physics</i>.
    AIP Publishing. <a href="https://doi.org/10.1063/5.0087769">https://doi.org/10.1063/5.0087769</a>
  chicago: Palaia, Ivan, and Anđela Šarić. “Controlling Cluster Size in 2D Phase-Separating
    Binary Mixtures with Specific Interactions.” <i>The Journal of Chemical Physics</i>.
    AIP Publishing, 2022. <a href="https://doi.org/10.1063/5.0087769">https://doi.org/10.1063/5.0087769</a>.
  ieee: I. Palaia and A. Šarić, “Controlling cluster size in 2D phase-separating binary
    mixtures with specific interactions,” <i>The Journal of Chemical Physics</i>,
    vol. 156, no. 19. AIP Publishing, 2022.
  ista: Palaia I, Šarić A. 2022. Controlling cluster size in 2D phase-separating binary
    mixtures with specific interactions. The Journal of Chemical Physics. 156(19),
    194902.
  mla: Palaia, Ivan, and Anđela Šarić. “Controlling Cluster Size in 2D Phase-Separating
    Binary Mixtures with Specific Interactions.” <i>The Journal of Chemical Physics</i>,
    vol. 156, no. 19, 194902, AIP Publishing, 2022, doi:<a href="https://doi.org/10.1063/5.0087769">10.1063/5.0087769</a>.
  short: I. Palaia, A. Šarić, The Journal of Chemical Physics 156 (2022).
date_created: 2022-05-22T17:04:48Z
date_published: 2022-05-16T00:00:00Z
date_updated: 2023-09-05T11:59:00Z
day: '16'
ddc:
- '540'
department:
- _id: AnSa
doi: 10.1063/5.0087769
ec_funded: 1
external_id:
  isi:
  - '000797236000004'
file:
- access_level: open_access
  checksum: 7fada58059676a4bb0944b82247af740
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-23T07:45:33Z
  date_updated: 2022-05-23T07:45:33Z
  file_id: '11405'
  file_name: 2022_JourChemPhysics_Palaia.pdf
  file_size: 6387208
  relation: main_file
  success: 1
file_date_updated: 2022-05-23T07:45:33Z
has_accepted_license: '1'
intvolume: '       156'
isi: 1
issue: '19'
keyword:
- Physical and Theoretical Chemistry
- General Physics and Astronomy
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: eba2549b-77a9-11ec-83b8-a81e493eae4e
  call_identifier: H2020
  grant_number: '802960'
  name: 'Non-Equilibrium Protein Assembly: from Building Blocks to Biological Machines'
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
status: public
title: Controlling cluster size in 2D phase-separating binary mixtures with specific
  interactions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 156
year: '2022'
...
---
_id: '11401'
abstract:
- lang: eng
  text: Tin selenide (SnSe) is considered a robust candidate for thermoelectric applications
    due to its very high thermoelectric figure of merit, ZT, with values of 2.6 in
    p-type and 2.8 in n-type single crystals. Sn has been replaced with various lower
    group dopants to achieve successful p-type doping in SnSe with high ZT values.
    A known, facile, and powerful alternative way to introduce a hole carrier is to
    use a natural single Sn vacancy, VSn. Through transport and scanning tunneling
    microscopy studies, we discovered that VSn are dominant in high-quality (slow
    cooling rate) SnSe single crystals, while multiple vacancies, Vmulti, are dominant
    in low-quality (high cooling rate) single crystals. Surprisingly, both VSn and
    Vmulti help to increase the power factors of SnSe, whereas samples with dominant
    VSn have superior thermoelectric properties in SnSe single crystals. Additionally,
    the observation that Vmulti are good p-type sources observed in relatively low-quality
    single crystals is useful in thermoelectric applications because polycrystalline
    SnSe can be used due to its mechanical strength; this substance is usually fabricated
    at very high cooling speeds.
acknowledgement: This work was supported by the National Research Foundation of Korea
  [NRF-2019R1F1A1058473, NRF-2019R1A6A1A11053838, and NRF-2020K1A4A7A02095438].
article_number: '42'
article_processing_charge: No
article_type: original
author:
- first_name: Van Quang
  full_name: Nguyen, Van Quang
  last_name: Nguyen
- first_name: Thi Ly
  full_name: Trinh, Thi Ly
  last_name: Trinh
- first_name: Cheng
  full_name: Chang, Cheng
  id: 9E331C2E-9F27-11E9-AE48-5033E6697425
  last_name: Chang
  orcid: 0000-0002-9515-4277
- first_name: Li Dong
  full_name: Zhao, Li Dong
  last_name: Zhao
- first_name: Thi Huong
  full_name: Nguyen, Thi Huong
  last_name: Nguyen
- first_name: Van Thiet
  full_name: Duong, Van Thiet
  last_name: Duong
- first_name: Anh Tuan
  full_name: Duong, Anh Tuan
  last_name: Duong
- first_name: Jong Ho
  full_name: Park, Jong Ho
  last_name: Park
- first_name: Sudong
  full_name: Park, Sudong
  last_name: Park
- first_name: Jungdae
  full_name: Kim, Jungdae
  last_name: Kim
- first_name: Sunglae
  full_name: Cho, Sunglae
  last_name: Cho
citation:
  ama: 'Nguyen VQ, Trinh TL, Chang C, et al. Unidentified major p-type source in SnSe:
    Multivacancies. <i>NPG Asia Materials</i>. 2022;14. doi:<a href="https://doi.org/10.1038/s41427-022-00393-5">10.1038/s41427-022-00393-5</a>'
  apa: 'Nguyen, V. Q., Trinh, T. L., Chang, C., Zhao, L. D., Nguyen, T. H., Duong,
    V. T., … Cho, S. (2022). Unidentified major p-type source in SnSe: Multivacancies.
    <i>NPG Asia Materials</i>. Springer Nature. <a href="https://doi.org/10.1038/s41427-022-00393-5">https://doi.org/10.1038/s41427-022-00393-5</a>'
  chicago: 'Nguyen, Van Quang, Thi Ly Trinh, Cheng Chang, Li Dong Zhao, Thi Huong
    Nguyen, Van Thiet Duong, Anh Tuan Duong, et al. “Unidentified Major P-Type Source
    in SnSe: Multivacancies.” <i>NPG Asia Materials</i>. Springer Nature, 2022. <a
    href="https://doi.org/10.1038/s41427-022-00393-5">https://doi.org/10.1038/s41427-022-00393-5</a>.'
  ieee: 'V. Q. Nguyen <i>et al.</i>, “Unidentified major p-type source in SnSe: Multivacancies,”
    <i>NPG Asia Materials</i>, vol. 14. Springer Nature, 2022.'
  ista: 'Nguyen VQ, Trinh TL, Chang C, Zhao LD, Nguyen TH, Duong VT, Duong AT, Park
    JH, Park S, Kim J, Cho S. 2022. Unidentified major p-type source in SnSe: Multivacancies.
    NPG Asia Materials. 14, 42.'
  mla: 'Nguyen, Van Quang, et al. “Unidentified Major P-Type Source in SnSe: Multivacancies.”
    <i>NPG Asia Materials</i>, vol. 14, 42, Springer Nature, 2022, doi:<a href="https://doi.org/10.1038/s41427-022-00393-5">10.1038/s41427-022-00393-5</a>.'
  short: V.Q. Nguyen, T.L. Trinh, C. Chang, L.D. Zhao, T.H. Nguyen, V.T. Duong, A.T.
    Duong, J.H. Park, S. Park, J. Kim, S. Cho, NPG Asia Materials 14 (2022).
date_created: 2022-05-22T22:01:40Z
date_published: 2022-05-13T00:00:00Z
date_updated: 2023-08-03T07:13:58Z
day: '13'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1038/s41427-022-00393-5
external_id:
  isi:
  - '000794880200001'
file:
- access_level: open_access
  checksum: 0579997cc1d28bf66e29357e08e3e39d
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-23T06:47:57Z
  date_updated: 2022-05-23T06:47:57Z
  file_id: '11404'
  file_name: 2022_NPGAsiaMaterials_Nguyen.pdf
  file_size: 6202545
  relation: main_file
  success: 1
file_date_updated: 2022-05-23T06:47:57Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
publication: NPG Asia Materials
publication_identifier:
  eissn:
  - 1884-4057
  issn:
  - 1884-4049
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Unidentified major p-type source in SnSe: Multivacancies'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2022'
...
---
_id: '11402'
abstract:
- lang: eng
  text: Fixed-horizon planning considers a weighted graph and asks to construct a
    path that maximizes the sum of weights for a given time horizon T. However, in
    many scenarios, the time horizon is not fixed, but the stopping time is chosen
    according to some distribution such that the expected stopping time is T. If the
    stopping-time distribution is not known, then to ensure robustness, the distribution
    is chosen by an adversary as the worst-case scenario. A stationary plan for every
    vertex always chooses the same outgoing edge. For fixed horizon or fixed stopping-time
    distribution, stationary plans are not sufficient for optimality. Quite surprisingly
    we show that when an adversary chooses the stopping-time distribution with expected
    stopping-time T, then stationary plans are sufficient. While computing optimal
    stationary plans for fixed horizon is NP-complete, we show that computing optimal
    stationary plans under adversarial stopping-time distribution can be achieved
    in polynomial time.
acknowledgement: This work was partially supported by Austrian Science Fund (FWF)
  NFN Grant No RiSE/SHiNE S11407 and by the grant ERC CoG 863818 (ForM-SMArt).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
citation:
  ama: Chatterjee K, Doyen L. Graph planning with expected finite horizon. <i>Journal
    of Computer and System Sciences</i>. 2022;129:1-21. doi:<a href="https://doi.org/10.1016/j.jcss.2022.04.003">10.1016/j.jcss.2022.04.003</a>
  apa: Chatterjee, K., &#38; Doyen, L. (2022). Graph planning with expected finite
    horizon. <i>Journal of Computer and System Sciences</i>. Elsevier. <a href="https://doi.org/10.1016/j.jcss.2022.04.003">https://doi.org/10.1016/j.jcss.2022.04.003</a>
  chicago: Chatterjee, Krishnendu, and Laurent Doyen. “Graph Planning with Expected
    Finite Horizon.” <i>Journal of Computer and System Sciences</i>. Elsevier, 2022.
    <a href="https://doi.org/10.1016/j.jcss.2022.04.003">https://doi.org/10.1016/j.jcss.2022.04.003</a>.
  ieee: K. Chatterjee and L. Doyen, “Graph planning with expected finite horizon,”
    <i>Journal of Computer and System Sciences</i>, vol. 129. Elsevier, pp. 1–21,
    2022.
  ista: Chatterjee K, Doyen L. 2022. Graph planning with expected finite horizon.
    Journal of Computer and System Sciences. 129, 1–21.
  mla: Chatterjee, Krishnendu, and Laurent Doyen. “Graph Planning with Expected Finite
    Horizon.” <i>Journal of Computer and System Sciences</i>, vol. 129, Elsevier,
    2022, pp. 1–21, doi:<a href="https://doi.org/10.1016/j.jcss.2022.04.003">10.1016/j.jcss.2022.04.003</a>.
  short: K. Chatterjee, L. Doyen, Journal of Computer and System Sciences 129 (2022)
    1–21.
date_created: 2022-05-22T22:01:40Z
date_published: 2022-11-01T00:00:00Z
date_updated: 2025-07-14T09:09:54Z
day: '01'
department:
- _id: KrCh
doi: 10.1016/j.jcss.2022.04.003
ec_funded: 1
external_id:
  arxiv:
  - '1802.03642'
  isi:
  - '000805002800001'
intvolume: '       129'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.1802.03642'
month: '11'
oa: 1
oa_version: Preprint
page: 1-21
project:
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: Journal of Computer and System Sciences
publication_identifier:
  eissn:
  - 1090-2724
  issn:
  - 0022-0000
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  record:
  - id: '7402'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Graph planning with expected finite horizon
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 129
year: '2022'
...
---
_id: '11403'
article_processing_charge: No
article_type: original
author:
- first_name: Andrea
  full_name: Stöllner, Andrea
  id: 4bdcf7f6-eb97-11eb-a6c2-9981bbdc3bed
  last_name: Stöllner
  orcid: 0000-0002-0464-8440
citation:
  ama: Stöllner A. Measuring airborne nanoplastics using aerosol physics. <i>Nature
    Reviews Earth and Environment</i>. 2022;3(6):360. doi:<a href="https://doi.org/10.1038/s43017-022-00302-y">10.1038/s43017-022-00302-y</a>
  apa: Stöllner, A. (2022). Measuring airborne nanoplastics using aerosol physics.
    <i>Nature Reviews Earth and Environment</i>. Springer Nature. <a href="https://doi.org/10.1038/s43017-022-00302-y">https://doi.org/10.1038/s43017-022-00302-y</a>
  chicago: Stöllner, Andrea. “Measuring Airborne Nanoplastics Using Aerosol Physics.”
    <i>Nature Reviews Earth and Environment</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/s43017-022-00302-y">https://doi.org/10.1038/s43017-022-00302-y</a>.
  ieee: A. Stöllner, “Measuring airborne nanoplastics using aerosol physics,” <i>Nature
    Reviews Earth and Environment</i>, vol. 3, no. 6. Springer Nature, p. 360, 2022.
  ista: Stöllner A. 2022. Measuring airborne nanoplastics using aerosol physics. Nature
    Reviews Earth and Environment. 3(6), 360.
  mla: Stöllner, Andrea. “Measuring Airborne Nanoplastics Using Aerosol Physics.”
    <i>Nature Reviews Earth and Environment</i>, vol. 3, no. 6, Springer Nature, 2022,
    p. 360, doi:<a href="https://doi.org/10.1038/s43017-022-00302-y">10.1038/s43017-022-00302-y</a>.
  short: A. Stöllner, Nature Reviews Earth and Environment 3 (2022) 360.
date_created: 2022-05-22T22:01:41Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2023-11-28T09:53:42Z
day: '01'
department:
- _id: GradSch
doi: 10.1038/s43017-022-00302-y
external_id:
  isi:
  - '000791125600002'
intvolume: '         3'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa_version: None
page: '360'
publication: Nature Reviews Earth and Environment
publication_identifier:
  eissn:
  - 2662-138X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Measuring airborne nanoplastics using aerosol physics
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2022'
...
---
_id: '11411'
abstract:
- lang: eng
  text: Many studies have quantified the distribution of heterozygosity and relatedness
    in natural populations, but few have examined the demographic processes driving
    these patterns. In this study, we take a novel approach by studying how population
    structure affects both pairwise identity and the distribution of heterozygosity
    in a natural population of the self-incompatible plant Antirrhinum majus. Excess
    variance in heterozygosity between individuals is due to identity disequilibrium,
    which reflects the variance in inbreeding between individuals; it is measured
    by the statistic g2. We calculated g2 together with FST and pairwise relatedness
    (Fij) using 91 SNPs in 22,353 individuals collected over 11 years. We find that
    pairwise Fij declines rapidly over short spatial scales, and the excess variance
    in heterozygosity between individuals reflects significant variation in inbreeding.
    Additionally, we detect an excess of individuals with around half the average
    heterozygosity, indicating either selfing or matings between close relatives.
    We use 2 types of simulation to ask whether variation in heterozygosity is consistent
    with fine-scale spatial population structure. First, by simulating offspring using
    parents drawn from a range of spatial scales, we show that the known pollen dispersal
    kernel explains g2. Second, we simulate a 1,000-generation pedigree using the
    known dispersal and spatial distribution and find that the resulting g2 is consistent
    with that observed from the field data. In contrast, a simulated population with
    uniform density underestimates g2, indicating that heterogeneous density promotes
    identity disequilibrium. Our study shows that heterogeneous density and leptokurtic
    dispersal can together explain the distribution of heterozygosity.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: "Part of this work was funded by Marie Curie COFUND Doctoral Fellowship
  and Austrian Science Fund FWF (grant P32166).\r\nWe thank the many volunteers and
  friends who have contributed to data collection in the field site over the years,
  in particular those who have managed field seasons: Barbora Trubenova, Maria Clara
  Melo, Tom Ellis, Eva Cereghetti, Lenka Matejovicova, Beatriz Pablo Carmona. Frederic
  Ferrer and Eva Salmerón Mateu have been immensely helpful with logistics at our
  informal field station, El Serrat de Planoles. We thank Sean Stankowski for technical
  help in\r\nproducing figure 1. This research was also supported by the Scientific
  Service Units (SSU) of IST Austria through resources provided by Scientific Computing
  (SciComp)."
article_number: iyac083
article_processing_charge: No
article_type: original
author:
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
- first_name: Louise S
  full_name: Arathoon, Louise S
  id: 2CFCFF98-F248-11E8-B48F-1D18A9856A87
  last_name: Arathoon
  orcid: 0000-0003-1771-714X
- first_name: Carina
  full_name: Baskett, Carina
  id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
  last_name: Baskett
  orcid: 0000-0002-7354-8574
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. Effects
    of fine-scale population structure on the distribution of heterozygosity in a
    long-term study of Antirrhinum majus. <i>Genetics</i>. 2022;221(3). doi:<a href="https://doi.org/10.1093/genetics/iyac083">10.1093/genetics/iyac083</a>
  apa: Surendranadh, P., Arathoon, L. S., Baskett, C., Field, D., Pickup, M., &#38;
    Barton, N. H. (2022). Effects of fine-scale population structure on the distribution
    of heterozygosity in a long-term study of Antirrhinum majus. <i>Genetics</i>.
    Oxford University Press. <a href="https://doi.org/10.1093/genetics/iyac083">https://doi.org/10.1093/genetics/iyac083</a>
  chicago: Surendranadh, Parvathy, Louise S Arathoon, Carina Baskett, David Field,
    Melinda Pickup, and Nicholas H Barton. “Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus.”
    <i>Genetics</i>. Oxford University Press, 2022. <a href="https://doi.org/10.1093/genetics/iyac083">https://doi.org/10.1093/genetics/iyac083</a>.
  ieee: P. Surendranadh, L. S. Arathoon, C. Baskett, D. Field, M. Pickup, and N. H.
    Barton, “Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus,” <i>Genetics</i>, vol. 221, no. 3.
    Oxford University Press, 2022.
  ista: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. 2022.
    Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus. Genetics. 221(3), iyac083.
  mla: Surendranadh, Parvathy, et al. “Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus.”
    <i>Genetics</i>, vol. 221, no. 3, iyac083, Oxford University Press, 2022, doi:<a
    href="https://doi.org/10.1093/genetics/iyac083">10.1093/genetics/iyac083</a>.
  short: P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton,
    Genetics 221 (2022).
date_created: 2022-05-26T13:44:50Z
date_published: 2022-07-01T00:00:00Z
date_updated: 2024-02-21T12:38:33Z
day: '01'
ddc:
- '576'
department:
- _id: GradSch
- _id: NiBa
doi: 10.1093/genetics/iyac083
external_id:
  isi:
  - '000803735800001'
  pmid:
  - '35639938'
file:
- access_level: open_access
  checksum: cc2d56deb608bd53c5cc02f03a875107
  content_type: application/pdf
  creator: larathoo
  date_created: 2022-05-26T12:48:15Z
  date_updated: 2022-05-26T12:48:15Z
  file_id: '11412'
  file_name: Manuscript.pdf
  file_size: 885374
  relation: main_file
  success: 1
- access_level: open_access
  checksum: 693742595b6c7ed809423be01460d083
  content_type: application/pdf
  creator: larathoo
  date_created: 2022-05-26T12:48:21Z
  date_updated: 2022-05-26T12:48:21Z
  file_id: '11413'
  file_name: SupplementalMaterial.pdf
  file_size: 1401704
  relation: main_file
  success: 1
file_date_updated: 2022-05-26T12:48:21Z
has_accepted_license: '1'
intvolume: '       221'
isi: 1
issue: '3'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
pmid: 1
project:
- _id: 05959E1C-7A3F-11EA-A408-12923DDC885E
  grant_number: P32166
  name: The maintenance of alternative adaptive peaks in snapdragons
publication: Genetics
publication_identifier:
  eissn:
  - 1943-2631
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
  record:
  - id: '14651'
    relation: dissertation_contains
    status: public
  - id: '11321'
    relation: research_data
    status: public
  - id: '9192'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Effects of fine-scale population structure on the distribution of heterozygosity
  in a long-term study of Antirrhinum majus
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 221
year: '2022'
...
---
_id: '11417'
abstract:
- lang: eng
  text: "Over the past few years, the field of quantum information science has seen
    tremendous progress toward realizing large-scale quantum computers. With demonstrations
    of quantum computers outperforming classical computers for a select range of problems,1–3
    we have finally entered the noisy, intermediate-scale quantum (NISQ) computing
    era. While the quantum computers of today are technological marvels, they are
    not yet error corrected, and it is unclear whether any system will scale beyond
    a few hundred logical qubits without significant changes to architecture and control
    schemes. Today's quantum systems are analogous to the ENIAC (Electronic Numerical
    Integrator And Computer) and EDVAC (Electronic Discrete Variable Automatic Computer)
    systems of the 1940s, which ran on vacuum tubes. These machines were built on
    a solid, nominally scalable architecture and when they were developed, nobody
    could have predicted the development of the transistor and the impact of the resulting
    semiconductor industry. Simply put, the computers of today are nothing like the
    early computers of the 1940s. We believe that the qubits of future fault-tolerant
    quantum systems will look quite different from the qubits of the NISQ machines
    in operation today. This Special Topic issue is devoted to new and emerging quantum
    systems with a focus on enabling technologies that can eventually lead to the
    quantum analog to the transistor. We have solicited both research4–18 and perspective
    articles19–21 to discuss new and emerging qubit systems with a focus on novel
    materials, encodings, and architectures. We are proud to present a collection
    that touches on a wide range of technologies including superconductors,7–13,21
    semiconductors,15–17,19 and individual atomic qubits.18\r\n"
acknowledgement: "We would like to thank all of the authors who contributed to\r\nthis
  Special Topic. We would also like to thank the editorial team at\r\nAPL including
  Jessica Trudeau, Emma Van Burns, Martin Weides,\r\nand Lesley Cohen."
article_number: '190401'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Anthony J.
  full_name: Sigillito, Anthony J.
  last_name: Sigillito
- first_name: Jacob P.
  full_name: Covey, Jacob P.
  last_name: Covey
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: Karl
  full_name: Petersson, Karl
  last_name: Petersson
- first_name: Stefan
  full_name: Preble, Stefan
  last_name: Preble
citation:
  ama: 'Sigillito AJ, Covey JP, Fink JM, Petersson K, Preble S. Emerging qubit systems:
    Guest editorial. <i>Applied Physics Letters</i>. 2022;120(19). doi:<a href="https://doi.org/10.1063/5.0097339">10.1063/5.0097339</a>'
  apa: 'Sigillito, A. J., Covey, J. P., Fink, J. M., Petersson, K., &#38; Preble,
    S. (2022). Emerging qubit systems: Guest editorial. <i>Applied Physics Letters</i>.
    American Institute of Physics. <a href="https://doi.org/10.1063/5.0097339">https://doi.org/10.1063/5.0097339</a>'
  chicago: 'Sigillito, Anthony J., Jacob P. Covey, Johannes M Fink, Karl Petersson,
    and Stefan Preble. “Emerging Qubit Systems: Guest Editorial.” <i>Applied Physics
    Letters</i>. American Institute of Physics, 2022. <a href="https://doi.org/10.1063/5.0097339">https://doi.org/10.1063/5.0097339</a>.'
  ieee: 'A. J. Sigillito, J. P. Covey, J. M. Fink, K. Petersson, and S. Preble, “Emerging
    qubit systems: Guest editorial,” <i>Applied Physics Letters</i>, vol. 120, no.
    19. American Institute of Physics, 2022.'
  ista: 'Sigillito AJ, Covey JP, Fink JM, Petersson K, Preble S. 2022. Emerging qubit
    systems: Guest editorial. Applied Physics Letters. 120(19), 190401.'
  mla: 'Sigillito, Anthony J., et al. “Emerging Qubit Systems: Guest Editorial.” <i>Applied
    Physics Letters</i>, vol. 120, no. 19, 190401, American Institute of Physics,
    2022, doi:<a href="https://doi.org/10.1063/5.0097339">10.1063/5.0097339</a>.'
  short: A.J. Sigillito, J.P. Covey, J.M. Fink, K. Petersson, S. Preble, Applied Physics
    Letters 120 (2022).
date_created: 2022-05-29T22:01:53Z
date_published: 2022-05-12T00:00:00Z
date_updated: 2023-08-03T07:16:20Z
day: '12'
department:
- _id: JoFi
doi: 10.1063/5.0097339
external_id:
  isi:
  - '000796002100002'
intvolume: '       120'
isi: 1
issue: '19'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1063/5.0097339
month: '05'
oa: 1
oa_version: Published Version
publication: Applied Physics Letters
publication_identifier:
  issn:
  - 0003-6951
publication_status: published
publisher: American Institute of Physics
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Emerging qubit systems: Guest editorial'
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 120
year: '2022'
...
---
_id: '11418'
abstract:
- lang: eng
  text: "We consider the quadratic form of a general high-rank deterministic matrix
    on the eigenvectors of an N×N\r\nWigner matrix and prove that it has Gaussian
    fluctuation for each bulk eigenvector in the large N limit. The proof is a combination
    of the energy method for the Dyson Brownian motion inspired by Marcinek and Yau
    (2021) and our recent multiresolvent local laws (Comm. Math. Phys. 388 (2021)
    1005–1048)."
acknowledgement: L.E. would like to thank Zhigang Bao for many illuminating discussions
  in an early stage of this research. The authors are also grateful to Paul Bourgade
  for his comments on the manuscript and the anonymous referee for several useful
  suggestions.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Giorgio
  full_name: Cipolloni, Giorgio
  id: 42198EFA-F248-11E8-B48F-1D18A9856A87
  last_name: Cipolloni
  orcid: 0000-0002-4901-7992
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: Cipolloni G, Erdös L, Schröder DJ. Normal fluctuation in quantum ergodicity
    for Wigner matrices. <i>Annals of Probability</i>. 2022;50(3):984-1012. doi:<a
    href="https://doi.org/10.1214/21-AOP1552">10.1214/21-AOP1552</a>
  apa: Cipolloni, G., Erdös, L., &#38; Schröder, D. J. (2022). Normal fluctuation
    in quantum ergodicity for Wigner matrices. <i>Annals of Probability</i>. Institute
    of Mathematical Statistics. <a href="https://doi.org/10.1214/21-AOP1552">https://doi.org/10.1214/21-AOP1552</a>
  chicago: Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Normal Fluctuation
    in Quantum Ergodicity for Wigner Matrices.” <i>Annals of Probability</i>. Institute
    of Mathematical Statistics, 2022. <a href="https://doi.org/10.1214/21-AOP1552">https://doi.org/10.1214/21-AOP1552</a>.
  ieee: G. Cipolloni, L. Erdös, and D. J. Schröder, “Normal fluctuation in quantum
    ergodicity for Wigner matrices,” <i>Annals of Probability</i>, vol. 50, no. 3.
    Institute of Mathematical Statistics, pp. 984–1012, 2022.
  ista: Cipolloni G, Erdös L, Schröder DJ. 2022. Normal fluctuation in quantum ergodicity
    for Wigner matrices. Annals of Probability. 50(3), 984–1012.
  mla: Cipolloni, Giorgio, et al. “Normal Fluctuation in Quantum Ergodicity for Wigner
    Matrices.” <i>Annals of Probability</i>, vol. 50, no. 3, Institute of Mathematical
    Statistics, 2022, pp. 984–1012, doi:<a href="https://doi.org/10.1214/21-AOP1552">10.1214/21-AOP1552</a>.
  short: G. Cipolloni, L. Erdös, D.J. Schröder, Annals of Probability 50 (2022) 984–1012.
date_created: 2022-05-29T22:01:53Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2023-08-03T07:16:53Z
day: '01'
department:
- _id: LaEr
doi: 10.1214/21-AOP1552
external_id:
  arxiv:
  - '2103.06730'
  isi:
  - '000793963400005'
intvolume: '        50'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2103.06730
month: '05'
oa: 1
oa_version: Preprint
page: 984-1012
publication: Annals of Probability
publication_identifier:
  eissn:
  - 2168-894X
  issn:
  - 0091-1798
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Normal fluctuation in quantum ergodicity for Wigner matrices
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 50
year: '2022'
...
---
_id: '11419'
abstract:
- lang: eng
  text: Elevation of soluble wild-type (WT) tau occurs in synaptic compartments in
    Alzheimer’s disease. We addressed whether tau elevation affects synaptic transmission
    at the calyx of Held in slices from mice brainstem. Whole-cell loading of WT human
    tau (h-tau) in presynaptic terminals at 10–20 µM caused microtubule (MT) assembly
    and activity-dependent rundown of excitatory neurotransmission. Capacitance measurements
    revealed that the primary target of WT h-tau is vesicle endocytosis. Blocking
    MT assembly using nocodazole prevented tau-induced impairments of endocytosis
    and neurotransmission. Immunofluorescence imaging analyses revealed that MT assembly
    by WT h-tau loading was associated with an increased MT-bound fraction of the
    endocytic protein dynamin. A synthetic dodecapeptide corresponding to dynamin
    1-pleckstrin-homology domain inhibited MT-dynamin interaction and rescued tau-induced
    impairments of endocytosis and neurotransmission. We conclude that elevation of
    presynaptic WT tau induces de novo assembly of MTs, thereby sequestering free
    dynamins. As a result, endocytosis and subsequent vesicle replenishment are impaired,
    causing activity-dependent rundown of neurotransmission.
acknowledgement: We thank Yasuo Ihara, Nobuyuki Nukina, and Takeshi Sakaba for comments
  and Patrick Stoney for editing this paper. We also thank Shota Okuda and Mikako
  Matsubara for their contributions in the early stage of this study, and Satoko Wada-Kakuda
  for technical assistant with in vitro analysis of tau. This research was supported
  by funding from Okinawa Institute of Science and Technology and from Technology
  (OIST) and Core Research for the Evolutional Science and Technology of Japan Science
  and Technology Agency (CREST) to TT, and by Scientific Research on Innovative Areas
  to TM (Brain Protein Aging and Dementia Control 26117004).
article_number: e73542
article_processing_charge: No
article_type: original
author:
- first_name: Tetsuya
  full_name: Hori, Tetsuya
  last_name: Hori
- first_name: Kohgaku
  full_name: Eguchi, Kohgaku
  id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
  last_name: Eguchi
  orcid: 0000-0002-6170-2546
- first_name: Han Ying
  full_name: Wang, Han Ying
  last_name: Wang
- first_name: Tomohiro
  full_name: Miyasaka, Tomohiro
  last_name: Miyasaka
- first_name: Laurent
  full_name: Guillaud, Laurent
  last_name: Guillaud
- first_name: Zacharie
  full_name: Taoufiq, Zacharie
  last_name: Taoufiq
- first_name: Satyajit
  full_name: Mahapatra, Satyajit
  last_name: Mahapatra
- first_name: Hiroshi
  full_name: Yamada, Hiroshi
  last_name: Yamada
- first_name: Kohji
  full_name: Takei, Kohji
  last_name: Takei
- first_name: Tomoyuki
  full_name: Takahashi, Tomoyuki
  last_name: Takahashi
citation:
  ama: Hori T, Eguchi K, Wang HY, et al. Microtubule assembly by tau impairs endocytosis
    and neurotransmission via dynamin sequestration in Alzheimer’s disease synapse
    model. <i>eLife</i>. 2022;11. doi:<a href="https://doi.org/10.7554/eLife.73542">10.7554/eLife.73542</a>
  apa: Hori, T., Eguchi, K., Wang, H. Y., Miyasaka, T., Guillaud, L., Taoufiq, Z.,
    … Takahashi, T. (2022). Microtubule assembly by tau impairs endocytosis and neurotransmission
    via dynamin sequestration in Alzheimer’s disease synapse model. <i>ELife</i>.
    eLife Sciences Publications. <a href="https://doi.org/10.7554/eLife.73542">https://doi.org/10.7554/eLife.73542</a>
  chicago: Hori, Tetsuya, Kohgaku Eguchi, Han Ying Wang, Tomohiro Miyasaka, Laurent
    Guillaud, Zacharie Taoufiq, Satyajit Mahapatra, Hiroshi Yamada, Kohji Takei, and
    Tomoyuki Takahashi. “Microtubule Assembly by Tau Impairs Endocytosis and Neurotransmission
    via Dynamin Sequestration in Alzheimer’s Disease Synapse Model.” <i>ELife</i>.
    eLife Sciences Publications, 2022. <a href="https://doi.org/10.7554/eLife.73542">https://doi.org/10.7554/eLife.73542</a>.
  ieee: T. Hori <i>et al.</i>, “Microtubule assembly by tau impairs endocytosis and
    neurotransmission via dynamin sequestration in Alzheimer’s disease synapse model,”
    <i>eLife</i>, vol. 11. eLife Sciences Publications, 2022.
  ista: Hori T, Eguchi K, Wang HY, Miyasaka T, Guillaud L, Taoufiq Z, Mahapatra S,
    Yamada H, Takei K, Takahashi T. 2022. Microtubule assembly by tau impairs endocytosis
    and neurotransmission via dynamin sequestration in Alzheimer’s disease synapse
    model. eLife. 11, e73542.
  mla: Hori, Tetsuya, et al. “Microtubule Assembly by Tau Impairs Endocytosis and
    Neurotransmission via Dynamin Sequestration in Alzheimer’s Disease Synapse Model.”
    <i>ELife</i>, vol. 11, e73542, eLife Sciences Publications, 2022, doi:<a href="https://doi.org/10.7554/eLife.73542">10.7554/eLife.73542</a>.
  short: T. Hori, K. Eguchi, H.Y. Wang, T. Miyasaka, L. Guillaud, Z. Taoufiq, S. Mahapatra,
    H. Yamada, K. Takei, T. Takahashi, ELife 11 (2022).
date_created: 2022-05-29T22:01:54Z
date_published: 2022-05-05T00:00:00Z
date_updated: 2023-08-03T07:15:49Z
day: '05'
ddc:
- '616'
department:
- _id: RySh
doi: 10.7554/eLife.73542
external_id:
  isi:
  - '000876231600001'
  pmid:
  - '35471147 '
file:
- access_level: open_access
  checksum: ccddbd167e00ff8375f12998af497152
  content_type: application/pdf
  creator: cchlebak
  date_created: 2022-05-30T08:09:16Z
  date_updated: 2022-05-30T08:09:16Z
  file_id: '11421'
  file_name: elife-73542-v2.pdf
  file_size: 2466296
  relation: main_file
  success: 1
file_date_updated: 2022-05-30T08:09:16Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
  eissn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Microtubule assembly by tau impairs endocytosis and neurotransmission via dynamin
  sequestration in Alzheimer's disease synapse model
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2022'
...
---
_id: '11420'
abstract:
- lang: eng
  text: 'Understanding the properties of neural networks trained via stochastic gradient
    descent (SGD) is at the heart of the theory of deep learning. In this work, we
    take a mean-field view, and consider a two-layer ReLU network trained via noisy-SGD
    for a univariate regularized regression problem. Our main result is that SGD with
    vanishingly small noise injected in the gradients is biased towards a simple solution:
    at convergence, the ReLU network implements a piecewise linear map of the inputs,
    and the number of “knot” points -- i.e., points where the tangent of the ReLU
    network estimator changes -- between two consecutive training inputs is at most
    three. In particular, as the number of neurons of the network grows, the SGD dynamics
    is captured by the solution of a gradient flow and, at convergence, the distribution
    of the weights approaches the unique minimizer of a related free energy, which
    has a Gibbs form. Our key technical contribution consists in the analysis of the
    estimator resulting from this minimizer: we show that its second derivative vanishes
    everywhere, except at some specific locations which represent the “knot” points.
    We also provide empirical evidence that knots at locations distinct from the data
    points might occur, as predicted by our theory.'
acknowledgement: "We would like to thank Mert Pilanci for several exploratory discussions
  in the early stage\r\nof the project, Jan Maas for clarifications about Jordan et
  al. (1998), and Max Zimmer for\r\nsuggestive numerical experiments. A. Shevchenko
  and M. Mondelli are partially supported\r\nby the 2019 Lopez-Loreta Prize. V. Kungurtsev
  acknowledges support to the OP VVV\r\nproject CZ.02.1.01/0.0/0.0/16 019/0000765
  Research Center for Informatics.\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Aleksandr
  full_name: Shevchenko, Aleksandr
  id: F2B06EC2-C99E-11E9-89F0-752EE6697425
  last_name: Shevchenko
- first_name: Vyacheslav
  full_name: Kungurtsev, Vyacheslav
  last_name: Kungurtsev
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
citation:
  ama: Shevchenko A, Kungurtsev V, Mondelli M. Mean-field analysis of piecewise linear
    solutions for wide ReLU networks. <i>Journal of Machine Learning Research</i>.
    2022;23(130):1-55.
  apa: Shevchenko, A., Kungurtsev, V., &#38; Mondelli, M. (2022). Mean-field analysis
    of piecewise linear solutions for wide ReLU networks. <i>Journal of Machine Learning
    Research</i>. Journal of Machine Learning Research.
  chicago: Shevchenko, Aleksandr, Vyacheslav Kungurtsev, and Marco Mondelli. “Mean-Field
    Analysis of Piecewise Linear Solutions for Wide ReLU Networks.” <i>Journal of
    Machine Learning Research</i>. Journal of Machine Learning Research, 2022.
  ieee: A. Shevchenko, V. Kungurtsev, and M. Mondelli, “Mean-field analysis of piecewise
    linear solutions for wide ReLU networks,” <i>Journal of Machine Learning Research</i>,
    vol. 23, no. 130. Journal of Machine Learning Research, pp. 1–55, 2022.
  ista: Shevchenko A, Kungurtsev V, Mondelli M. 2022. Mean-field analysis of piecewise
    linear solutions for wide ReLU networks. Journal of Machine Learning Research.
    23(130), 1–55.
  mla: Shevchenko, Aleksandr, et al. “Mean-Field Analysis of Piecewise Linear Solutions
    for Wide ReLU Networks.” <i>Journal of Machine Learning Research</i>, vol. 23,
    no. 130, Journal of Machine Learning Research, 2022, pp. 1–55.
  short: A. Shevchenko, V. Kungurtsev, M. Mondelli, Journal of Machine Learning Research
    23 (2022) 1–55.
date_created: 2022-05-29T22:01:54Z
date_published: 2022-04-01T00:00:00Z
date_updated: 2024-09-10T13:03:17Z
day: '01'
ddc:
- '000'
department:
- _id: MaMo
- _id: DaAl
external_id:
  arxiv:
  - '2111.02278'
file:
- access_level: open_access
  checksum: d4ff5d1affb34848b5c5e4002483fc62
  content_type: application/pdf
  creator: cchlebak
  date_created: 2022-05-30T08:22:55Z
  date_updated: 2022-05-30T08:22:55Z
  file_id: '11422'
  file_name: 21-1365.pdf
  file_size: 1521701
  relation: main_file
  success: 1
file_date_updated: 2022-05-30T08:22:55Z
has_accepted_license: '1'
intvolume: '        23'
issue: '130'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1-55
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
  name: Prix Lopez-Loretta 2019 - Marco Mondelli
publication: Journal of Machine Learning Research
publication_identifier:
  eissn:
  - 1533-7928
  issn:
  - 1532-4435
publication_status: published
publisher: Journal of Machine Learning Research
quality_controlled: '1'
related_material:
  link:
  - relation: other
    url: https://www.jmlr.org/papers/v23/21-1365.html
scopus_import: '1'
status: public
title: Mean-field analysis of piecewise linear solutions for wide ReLU networks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 23
year: '2022'
...
---
_id: '11428'
abstract:
- lang: eng
  text: The medial axis of a set consists of the points in the ambient space without
    a unique closest point on the original set. Since its introduction, the medial
    axis has been used extensively in many applications as a method of computing a
    topologically equivalent skeleton. Unfortunately, one limiting factor in the use
    of the medial axis of a smooth manifold is that it is not necessarily topologically
    stable under small perturbations of the manifold. To counter these instabilities
    various prunings of the medial axis have been proposed. Here, we examine one type
    of pruning, called burning. Because of the good experimental results, it was hoped
    that the burning method of simplifying the medial axis would be stable. In this
    work we show a simple example that dashes such hopes based on Bing’s house with
    two rooms, demonstrating an isotopy of a shape where the medial axis goes from
    collapsible to non-collapsible.
acknowledgement: 'Partially supported by the DFG Collaborative Research Center TRR
  109, “Discretization in Geometry and Dynamics” and the European Research Council
  (ERC), grant no. 788183, “Alpha Shape Theory Extended”. Erin Chambers: Supported
  in part by the National Science Foundation through grants DBI-1759807, CCF-1907612,
  and CCF-2106672. Mathijs Wintraecken: Supported by the European Union’s Horizon
  2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement
  No. 754411. The Austrian science fund (FWF) M-3073 Acknowledgements We thank André
  Lieutier, David Letscher, Ellen Gasparovic, Kathryn Leonard, and Tao Ju for early
  discussions on this work. We also thank Lu Liu, Yajie Yan and Tao Ju for sharing
  code to generate the examples.'
article_processing_charge: No
author:
- first_name: Erin
  full_name: Chambers, Erin
  last_name: Chambers
- first_name: Christopher D
  full_name: Fillmore, Christopher D
  id: 35638A5C-AAC7-11E9-B0BF-5503E6697425
  last_name: Fillmore
- first_name: Elizabeth R
  full_name: Stephenson, Elizabeth R
  id: 2D04F932-F248-11E8-B48F-1D18A9856A87
  last_name: Stephenson
  orcid: 0000-0002-6862-208X
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: 'Chambers E, Fillmore CD, Stephenson ER, Wintraecken M. A cautionary tale:
    Burning the medial axis is unstable. In: Goaoc X, Kerber M, eds. <i>38th International
    Symposium on Computational Geometry</i>. Vol 224. LIPIcs. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik; 2022:66:1-66:9. doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2022.66">10.4230/LIPIcs.SoCG.2022.66</a>'
  apa: 'Chambers, E., Fillmore, C. D., Stephenson, E. R., &#38; Wintraecken, M. (2022).
    A cautionary tale: Burning the medial axis is unstable. In X. Goaoc &#38; M. Kerber
    (Eds.), <i>38th International Symposium on Computational Geometry</i> (Vol. 224,
    p. 66:1-66:9). Berlin, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
    <a href="https://doi.org/10.4230/LIPIcs.SoCG.2022.66">https://doi.org/10.4230/LIPIcs.SoCG.2022.66</a>'
  chicago: 'Chambers, Erin, Christopher D Fillmore, Elizabeth R Stephenson, and Mathijs
    Wintraecken. “A Cautionary Tale: Burning the Medial Axis Is Unstable.” In <i>38th
    International Symposium on Computational Geometry</i>, edited by Xavier Goaoc
    and Michael Kerber, 224:66:1-66:9. LIPIcs. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2022. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2022.66">https://doi.org/10.4230/LIPIcs.SoCG.2022.66</a>.'
  ieee: 'E. Chambers, C. D. Fillmore, E. R. Stephenson, and M. Wintraecken, “A cautionary
    tale: Burning the medial axis is unstable,” in <i>38th International Symposium
    on Computational Geometry</i>, Berlin, Germany, 2022, vol. 224, p. 66:1-66:9.'
  ista: 'Chambers E, Fillmore CD, Stephenson ER, Wintraecken M. 2022. A cautionary
    tale: Burning the medial axis is unstable. 38th International Symposium on Computational
    Geometry. SoCG: Symposium on Computational GeometryLIPIcs vol. 224, 66:1-66:9.'
  mla: 'Chambers, Erin, et al. “A Cautionary Tale: Burning the Medial Axis Is Unstable.”
    <i>38th International Symposium on Computational Geometry</i>, edited by Xavier
    Goaoc and Michael Kerber, vol. 224, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2022, p. 66:1-66:9, doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2022.66">10.4230/LIPIcs.SoCG.2022.66</a>.'
  short: E. Chambers, C.D. Fillmore, E.R. Stephenson, M. Wintraecken, in:, X. Goaoc,
    M. Kerber (Eds.), 38th International Symposium on Computational Geometry, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2022, p. 66:1-66:9.
conference:
  end_date: 2022-06-10
  location: Berlin, Germany
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2022-06-07
date_created: 2022-06-01T14:18:04Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2023-02-21T09:50:52Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2022.66
ec_funded: 1
editor:
- first_name: Xavier
  full_name: Goaoc, Xavier
  last_name: Goaoc
- first_name: Michael
  full_name: Kerber, Michael
  last_name: Kerber
file:
- access_level: open_access
  checksum: b25ce40fade4ebc0bcaae176db4f5f1f
  content_type: application/pdf
  creator: dernst
  date_created: 2022-06-07T07:58:30Z
  date_updated: 2022-06-07T07:58:30Z
  file_id: '11437'
  file_name: 2022_LIPICs_Chambers.pdf
  file_size: 17580705
  relation: main_file
  success: 1
file_date_updated: 2022-06-07T07:58:30Z
has_accepted_license: '1'
intvolume: '       224'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 66:1-66:9
project:
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: 38th International Symposium on Computational Geometry
publication_identifier:
  isbn:
  - 978-3-95977-227-3
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
series_title: LIPIcs
status: public
title: 'A cautionary tale: Burning the medial axis is unstable'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 224
year: '2022'
...
---
_id: '11429'
abstract:
- lang: eng
  text: "This book constitutes the refereed proceedings of the 18th International
    Symposium on Web and Wireless Geographical Information Systems, W2GIS 2022, held
    in Konstanz, Germany, in April 2022.\r\nThe 7 full papers presented together with
    6 short papers in the volume were carefully reviewed and selected from 16 submissions.
    \ The papers cover topics that range from mobile GIS and Location-Based Services
    to Spatial Information Retrieval and Wireless Sensor Networks."
alternative_title:
- LNCS
article_processing_charge: No
citation:
  ama: 'Karimipour F, Storandt S, eds. <i>Web and Wireless Geographical Information
    Systems</i>. Vol 13238. 1st ed. Cham: Springer Nature; 2022. doi:<a href="https://doi.org/10.1007/978-3-031-06245-2">10.1007/978-3-031-06245-2</a>'
  apa: 'Karimipour, F., &#38; Storandt, S. (Eds.). (2022). <i>Web and Wireless Geographical
    Information Systems</i> (1st ed., Vol. 13238). Cham: Springer Nature. <a href="https://doi.org/10.1007/978-3-031-06245-2">https://doi.org/10.1007/978-3-031-06245-2</a>'
  chicago: 'Karimipour, Farid, and Sabine Storandt, eds. <i>Web and Wireless Geographical
    Information Systems</i>. 1st ed. Vol. 13238. Cham: Springer Nature, 2022. <a href="https://doi.org/10.1007/978-3-031-06245-2">https://doi.org/10.1007/978-3-031-06245-2</a>.'
  ieee: 'F. Karimipour and S. Storandt, Eds., <i>Web and Wireless Geographical Information
    Systems</i>, 1st ed., vol. 13238. Cham: Springer Nature, 2022.'
  ista: 'Karimipour F, Storandt S eds. 2022. Web and Wireless Geographical Information
    Systems 1st ed., Cham: Springer Nature, 153p.'
  mla: Karimipour, Farid, and Sabine Storandt, editors. <i>Web and Wireless Geographical
    Information Systems</i>. 1st ed., vol. 13238, Springer Nature, 2022, doi:<a href="https://doi.org/10.1007/978-3-031-06245-2">10.1007/978-3-031-06245-2</a>.
  short: F. Karimipour, S. Storandt, eds., Web and Wireless Geographical Information
    Systems, 1st ed., Springer Nature, Cham, 2022.
date_created: 2022-06-02T05:40:53Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2022-06-02T05:56:22Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-031-06245-2
edition: '1'
editor:
- first_name: Farid
  full_name: Karimipour, Farid
  id: 2A2BCDC4-CF62-11E9-BE5E-3B1EE6697425
  last_name: Karimipour
  orcid: 0000-0001-6746-4174
- first_name: Sabine
  full_name: Storandt, Sabine
  last_name: Storandt
intvolume: '     13238'
language:
- iso: eng
month: '05'
oa_version: None
page: '153'
place: Cham
publication_identifier:
  eisbn:
  - '9783031062452'
  eissn:
  - 1611-3349
  isbn:
  - '9783031062445'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Web and Wireless Geographical Information Systems
type: book_editor
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13238
year: '2022'
...
