---
_id: '509'
abstract:
- lang: eng
  text: 'Clathrin-mediated endocytosis (CME) regulates many aspects of plant development,
    including hormone signaling and responses to environmental stresses. Despite the
    importance of this process, the machinery that regulates CME in plants is largely
    unknown. In mammals, the heterotetrameric ADAPTOR PROTEIN COMPLEX-2 (AP-2) is
    required for the formation of clathrin-coated vesicles at the plasma membrane
    (PM). Although the existence of AP-2 has been predicted in Arabidopsis thaliana,
    the biochemistry and functionality of the complex is still uncharacterized. Here,
    we identified all the subunits of the Arabidopsis AP-2 by tandem affinity purification
    and found that one of the large AP-2 subunits, AP2A1, localized at the PM and
    interacted with clathrin. Furthermore, endocytosis of the leucine-rich repeat
    receptor kinase, BRASSINOSTEROID INSENSITIVE1 (BRI1), was shown to depend on AP-2.
    Knockdown of the two Arabidopsis AP2A genes or overexpression of a dominant-negative
    version of the medium AP-2 subunit, AP2M, impaired BRI1 endocytosis and enhanced
    the brassinosteroid signaling. Our data reveal that the CME machinery in Arabidopsis
    is evolutionarily conserved and that AP-2 functions in receptormediated endocytosis. '
author:
- first_name: Simone
  full_name: Di Rubbo, Simone
  last_name: Di Rubbo
- first_name: Niloufer
  full_name: Irani, Niloufer
  last_name: Irani
- first_name: Soo
  full_name: Kim, Soo
  last_name: Kim
- first_name: Zheng
  full_name: Xu, Zheng
  last_name: Xu
- first_name: Astrid
  full_name: Gadeyne, Astrid
  last_name: Gadeyne
- first_name: Wim
  full_name: Dejonghe, Wim
  last_name: Dejonghe
- first_name: Isabelle
  full_name: Vanhoutte, Isabelle
  last_name: Vanhoutte
- first_name: Geert
  full_name: Persiau, Geert
  last_name: Persiau
- first_name: Dominique
  full_name: Eeckhout, Dominique
  last_name: Eeckhout
- first_name: Sibu
  full_name: Simon, Sibu
  id: 4542EF9A-F248-11E8-B48F-1D18A9856A87
  last_name: Simon
  orcid: 0000-0002-1998-6741
- first_name: Kyungyoung
  full_name: Song, Kyungyoung
  last_name: Song
- first_name: Jürgen
  full_name: Kleine Vehn, Jürgen
  last_name: Kleine Vehn
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Geert
  full_name: De Jaeger, Geert
  last_name: De Jaeger
- first_name: Daniël
  full_name: Van Damme, Daniël
  last_name: Van Damme
- first_name: Inhwan
  full_name: Hwang, Inhwan
  last_name: Hwang
- first_name: Eugenia
  full_name: Russinova, Eugenia
  last_name: Russinova
citation:
  ama: Di Rubbo S, Irani N, Kim S, et al. The clathrin adaptor complex AP-2 mediates
    endocytosis of brassinosteroid INSENSITIVE1 in arabidopsis. <i>Plant Cell</i>.
    2013;25(8):2986-2997. doi:<a href="https://doi.org/10.1105/tpc.113.114058">10.1105/tpc.113.114058</a>
  apa: Di Rubbo, S., Irani, N., Kim, S., Xu, Z., Gadeyne, A., Dejonghe, W., … Russinova,
    E. (2013). The clathrin adaptor complex AP-2 mediates endocytosis of brassinosteroid
    INSENSITIVE1 in arabidopsis. <i>Plant Cell</i>. American Society of Plant Biologists.
    <a href="https://doi.org/10.1105/tpc.113.114058">https://doi.org/10.1105/tpc.113.114058</a>
  chicago: Di Rubbo, Simone, Niloufer Irani, Soo Kim, Zheng Xu, Astrid Gadeyne, Wim
    Dejonghe, Isabelle Vanhoutte, et al. “The Clathrin Adaptor Complex AP-2 Mediates
    Endocytosis of Brassinosteroid INSENSITIVE1 in Arabidopsis.” <i>Plant Cell</i>.
    American Society of Plant Biologists, 2013. <a href="https://doi.org/10.1105/tpc.113.114058">https://doi.org/10.1105/tpc.113.114058</a>.
  ieee: S. Di Rubbo <i>et al.</i>, “The clathrin adaptor complex AP-2 mediates endocytosis
    of brassinosteroid INSENSITIVE1 in arabidopsis,” <i>Plant Cell</i>, vol. 25, no.
    8. American Society of Plant Biologists, pp. 2986–2997, 2013.
  ista: Di Rubbo S, Irani N, Kim S, Xu Z, Gadeyne A, Dejonghe W, Vanhoutte I, Persiau
    G, Eeckhout D, Simon S, Song K, Kleine Vehn J, Friml J, De Jaeger G, Van Damme
    D, Hwang I, Russinova E. 2013. The clathrin adaptor complex AP-2 mediates endocytosis
    of brassinosteroid INSENSITIVE1 in arabidopsis. Plant Cell. 25(8), 2986–2997.
  mla: Di Rubbo, Simone, et al. “The Clathrin Adaptor Complex AP-2 Mediates Endocytosis
    of Brassinosteroid INSENSITIVE1 in Arabidopsis.” <i>Plant Cell</i>, vol. 25, no.
    8, American Society of Plant Biologists, 2013, pp. 2986–97, doi:<a href="https://doi.org/10.1105/tpc.113.114058">10.1105/tpc.113.114058</a>.
  short: S. Di Rubbo, N. Irani, S. Kim, Z. Xu, A. Gadeyne, W. Dejonghe, I. Vanhoutte,
    G. Persiau, D. Eeckhout, S. Simon, K. Song, J. Kleine Vehn, J. Friml, G. De Jaeger,
    D. Van Damme, I. Hwang, E. Russinova, Plant Cell 25 (2013) 2986–2997.
date_created: 2018-12-11T11:46:52Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2021-01-12T08:01:13Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.113.114058
external_id:
  pmid:
  - '23975899'
intvolume: '        25'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3784593/
month: '08'
oa: 1
oa_version: Submitted Version
page: 2986 - 2997
pmid: 1
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '7311'
quality_controlled: '1'
scopus_import: 1
status: public
title: The clathrin adaptor complex AP-2 mediates endocytosis of brassinosteroid INSENSITIVE1
  in arabidopsis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2013'
...
---
_id: '511'
abstract:
- lang: eng
  text: The native auxin, indole-3-acetic acid (IAA), is a major regulator of plant
    growth and development. Its nonuniform distribution between cells and tissues
    underlies the spatiotemporal coordination of many developmental events and responses
    to environmental stimuli. The regulation of auxin gradients and the formation
    of auxin maxima/minima most likely involve the regulation of both metabolic and
    transport processes. In this article, we have demonstrated that 2-oxindole-3-acetic
    acid (oxIAA) is a major primary IAA catabolite formed in Arabidopsis thaliana
    root tissues. OxIAA had little biological activity and was formed rapidly and
    irreversibly in response to increases in auxin levels. We further showed that
    there is cell type-specific regulation of oxIAA levels in the Arabidopsis root
    apex. We propose that oxIAA is an important element in the regulation of output
    from auxin gradients and, therefore, in the regulation of auxin homeostasis and
    response mechanisms.
author:
- first_name: Aleš
  full_name: Pěnčík, Aleš
  last_name: Pěnčík
- first_name: Biljana
  full_name: Simonovik, Biljana
  last_name: Simonovik
- first_name: Sara
  full_name: Petersson, Sara
  last_name: Petersson
- first_name: Eva
  full_name: Henyková, Eva
  last_name: Henyková
- first_name: Sibu
  full_name: Simon, Sibu
  id: 4542EF9A-F248-11E8-B48F-1D18A9856A87
  last_name: Simon
  orcid: 0000-0002-1998-6741
- first_name: Kathleen
  full_name: Greenham, Kathleen
  last_name: Greenham
- first_name: Yi
  full_name: Zhang, Yi
  last_name: Zhang
- first_name: Mariusz
  full_name: Kowalczyk, Mariusz
  last_name: Kowalczyk
- first_name: Mark
  full_name: Estelle, Mark
  last_name: Estelle
- first_name: Eva
  full_name: Zažímalová, Eva
  last_name: Zažímalová
- first_name: Ondřej
  full_name: Novák, Ondřej
  last_name: Novák
- first_name: Göran
  full_name: Sandberg, Göran
  last_name: Sandberg
- first_name: Karin
  full_name: Ljung, Karin
  last_name: Ljung
citation:
  ama: Pěnčík A, Simonovik B, Petersson S, et al. Regulation of auxin homeostasis
    and gradients in Arabidopsis roots through the formation of the indole-3-acetic
    acid catabolite 2-oxindole-3-acetic acid. <i>Plant Cell</i>. 2013;25(10):3858-3870.
    doi:<a href="https://doi.org/10.1105/tpc.113.114421">10.1105/tpc.113.114421</a>
  apa: Pěnčík, A., Simonovik, B., Petersson, S., Henyková, E., Simon, S., Greenham,
    K., … Ljung, K. (2013). Regulation of auxin homeostasis and gradients in Arabidopsis
    roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic
    acid. <i>Plant Cell</i>. American Society of Plant Biologists. <a href="https://doi.org/10.1105/tpc.113.114421">https://doi.org/10.1105/tpc.113.114421</a>
  chicago: Pěnčík, Aleš, Biljana Simonovik, Sara Petersson, Eva Henyková, Sibu Simon,
    Kathleen Greenham, Yi Zhang, et al. “Regulation of Auxin Homeostasis and Gradients
    in Arabidopsis Roots through the Formation of the Indole-3-Acetic Acid Catabolite
    2-Oxindole-3-Acetic Acid.” <i>Plant Cell</i>. American Society of Plant Biologists,
    2013. <a href="https://doi.org/10.1105/tpc.113.114421">https://doi.org/10.1105/tpc.113.114421</a>.
  ieee: A. Pěnčík <i>et al.</i>, “Regulation of auxin homeostasis and gradients in
    Arabidopsis roots through the formation of the indole-3-acetic acid catabolite
    2-oxindole-3-acetic acid,” <i>Plant Cell</i>, vol. 25, no. 10. American Society
    of Plant Biologists, pp. 3858–3870, 2013.
  ista: Pěnčík A, Simonovik B, Petersson S, Henyková E, Simon S, Greenham K, Zhang
    Y, Kowalczyk M, Estelle M, Zažímalová E, Novák O, Sandberg G, Ljung K. 2013. Regulation
    of auxin homeostasis and gradients in Arabidopsis roots through the formation
    of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid. Plant Cell. 25(10),
    3858–3870.
  mla: Pěnčík, Aleš, et al. “Regulation of Auxin Homeostasis and Gradients in Arabidopsis
    Roots through the Formation of the Indole-3-Acetic Acid Catabolite 2-Oxindole-3-Acetic
    Acid.” <i>Plant Cell</i>, vol. 25, no. 10, American Society of Plant Biologists,
    2013, pp. 3858–70, doi:<a href="https://doi.org/10.1105/tpc.113.114421">10.1105/tpc.113.114421</a>.
  short: A. Pěnčík, B. Simonovik, S. Petersson, E. Henyková, S. Simon, K. Greenham,
    Y. Zhang, M. Kowalczyk, M. Estelle, E. Zažímalová, O. Novák, G. Sandberg, K. Ljung,
    Plant Cell 25 (2013) 3858–3870.
date_created: 2018-12-11T11:46:53Z
date_published: 2013-10-01T00:00:00Z
date_updated: 2021-01-12T08:01:15Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.113.114421
external_id:
  pmid:
  - '24163311'
intvolume: '        25'
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: www.doi.org/10.1105/tpc.113.114421
month: '10'
oa: 1
oa_version: Published Version
page: 3858 - 3870
pmid: 1
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '7309'
quality_controlled: '1'
scopus_import: 1
status: public
title: Regulation of auxin homeostasis and gradients in Arabidopsis roots through
  the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2013'
...
---
_id: '516'
abstract:
- lang: eng
  text: In plants, changes in local auxin concentrations can trigger a range of developmental
    processes as distinct tissues respond differently to the same auxin stimulus.
    However, little is known about how auxin is interpreted by individual cell types.
    We performed a transcriptomic analysis of responses to auxin within four distinct
    tissues of the Arabidopsis thaliana root and demonstrate that different cell types
    show competence for discrete responses. The majority of auxin‐responsive genes
    displayed a spatial bias in their induction or repression. The novel data set
    was used to examine how auxin influences tissue‐specific transcriptional regulation
    of cell‐identity markers. Additionally, the data were used in combination with
    spatial expression maps of the root to plot a transcriptomic auxin‐response gradient
    across the apical and basal meristem. The readout revealed a strong correlation
    for thousands of genes between the relative response to auxin and expression along
    the longitudinal axis of the root. This data set and comparative analysis provide
    a transcriptome‐level spatial breakdown of the response to auxin within an organ
    where this hormone mediates many aspects of development.
article_number: '688'
article_processing_charge: No
author:
- first_name: Bastiaan
  full_name: Bargmann, Bastiaan
  last_name: Bargmann
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Gabriel
  full_name: Krouk, Gabriel
  last_name: Krouk
- first_name: Tal
  full_name: Nawy, Tal
  last_name: Nawy
- first_name: Idan
  full_name: Efroni, Idan
  last_name: Efroni
- first_name: Eilon
  full_name: Shani, Eilon
  last_name: Shani
- first_name: Goh
  full_name: Choe, Goh
  last_name: Choe
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Dominique
  full_name: Bergmann, Dominique
  last_name: Bergmann
- first_name: Mark
  full_name: Estelle, Mark
  last_name: Estelle
- first_name: Kenneth
  full_name: Birnbaum, Kenneth
  last_name: Birnbaum
citation:
  ama: Bargmann B, Vanneste S, Krouk G, et al. A map of cell type‐specific auxin responses.
    <i>Molecular Systems Biology</i>. 2013;9(1). doi:<a href="https://doi.org/10.1038/msb.2013.40">10.1038/msb.2013.40</a>
  apa: Bargmann, B., Vanneste, S., Krouk, G., Nawy, T., Efroni, I., Shani, E., … Birnbaum,
    K. (2013). A map of cell type‐specific auxin responses. <i>Molecular Systems Biology</i>.
    Nature Publishing Group. <a href="https://doi.org/10.1038/msb.2013.40">https://doi.org/10.1038/msb.2013.40</a>
  chicago: Bargmann, Bastiaan, Steffen Vanneste, Gabriel Krouk, Tal Nawy, Idan Efroni,
    Eilon Shani, Goh Choe, et al. “A Map of Cell Type‐specific Auxin Responses.” <i>Molecular
    Systems Biology</i>. Nature Publishing Group, 2013. <a href="https://doi.org/10.1038/msb.2013.40">https://doi.org/10.1038/msb.2013.40</a>.
  ieee: B. Bargmann <i>et al.</i>, “A map of cell type‐specific auxin responses,”
    <i>Molecular Systems Biology</i>, vol. 9, no. 1. Nature Publishing Group, 2013.
  ista: Bargmann B, Vanneste S, Krouk G, Nawy T, Efroni I, Shani E, Choe G, Friml
    J, Bergmann D, Estelle M, Birnbaum K. 2013. A map of cell type‐specific auxin
    responses. Molecular Systems Biology. 9(1), 688.
  mla: Bargmann, Bastiaan, et al. “A Map of Cell Type‐specific Auxin Responses.” <i>Molecular
    Systems Biology</i>, vol. 9, no. 1, 688, Nature Publishing Group, 2013, doi:<a
    href="https://doi.org/10.1038/msb.2013.40">10.1038/msb.2013.40</a>.
  short: B. Bargmann, S. Vanneste, G. Krouk, T. Nawy, I. Efroni, E. Shani, G. Choe,
    J. Friml, D. Bergmann, M. Estelle, K. Birnbaum, Molecular Systems Biology 9 (2013).
date_created: 2018-12-11T11:46:55Z
date_published: 2013-09-10T00:00:00Z
date_updated: 2021-01-12T08:01:17Z
day: '10'
ddc:
- '581'
department:
- _id: JiFr
doi: 10.1038/msb.2013.40
file:
- access_level: open_access
  checksum: 9c4fbe793af4bb22b3fe50cc677a39bf
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:07:46Z
  date_updated: 2020-07-14T12:46:36Z
  file_id: '4644'
  file_name: IST-2018-936-v1+1_2008_Barton_A_map.pdf
  file_size: 3257692
  relation: main_file
file_date_updated: 2020-07-14T12:46:36Z
has_accepted_license: '1'
intvolume: '         9'
issue: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
publication: Molecular Systems Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '7303'
pubrep_id: '936'
quality_controlled: '1'
scopus_import: 1
status: public
title: A map of cell type‐specific auxin responses
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2013'
...
---
_id: '522'
abstract:
- lang: eng
  text: Podoplanin, a mucin-like plasma membrane protein, is expressed by lymphatic
    endothelial cells and responsible for separation of blood and lymphatic circulation
    through activation of platelets. Here we show that podoplanin is also expressed
    by thymic fibroblastic reticular cells (tFRC), a novel thymic medulla stroma cell
    type associated with thymic conduits, and involved in development of natural regulatory
    T cells (nTreg). Young mice deficient in podoplanin lack nTreg owing to retardation
    of CD4+CD25+ thymocytes in the cortex and missing differentiation of Foxp3+ thymocytes
    in the medulla. This might be due to CCL21 that delocalizes upon deletion of the
    CCL21-binding podoplanin from medullar tFRC to cortex areas. The animals do not
    remain devoid of nTreg but generate them delayed within the first month resulting
    in Th2-biased hypergammaglobulinemia but not in the death-causing autoimmune phenotype
    of Foxp3-deficient Scurfy mice.
author:
- first_name: Elke
  full_name: Fuertbauer, Elke
  last_name: Fuertbauer
- first_name: Jan
  full_name: Zaujec, Jan
  last_name: Zaujec
- first_name: Pavel
  full_name: Uhrin, Pavel
  last_name: Uhrin
- first_name: Ingrid
  full_name: Raab, Ingrid
  last_name: Raab
- first_name: Michele
  full_name: Weber, Michele
  id: 3A3FC708-F248-11E8-B48F-1D18A9856A87
  last_name: Weber
- first_name: Helga
  full_name: Schachner, Helga
  last_name: Schachner
- first_name: Miroslav
  full_name: Bauer, Miroslav
  last_name: Bauer
- first_name: Gerhard
  full_name: Schütz, Gerhard
  last_name: Schütz
- first_name: Bernd
  full_name: Binder, Bernd
  last_name: Binder
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: Dontscho
  full_name: Kerjaschki, Dontscho
  last_name: Kerjaschki
- first_name: Hannes
  full_name: Stockinger, Hannes
  last_name: Stockinger
citation:
  ama: Fuertbauer E, Zaujec J, Uhrin P, et al. Thymic medullar conduits-associated
    podoplanin promotes natural regulatory T cells. <i>Immunology Letters</i>. 2013;154(1-2):31-41.
    doi:<a href="https://doi.org/10.1016/j.imlet.2013.07.007">10.1016/j.imlet.2013.07.007</a>
  apa: Fuertbauer, E., Zaujec, J., Uhrin, P., Raab, I., Weber, M., Schachner, H.,
    … Stockinger, H. (2013). Thymic medullar conduits-associated podoplanin promotes
    natural regulatory T cells. <i>Immunology Letters</i>. Elsevier. <a href="https://doi.org/10.1016/j.imlet.2013.07.007">https://doi.org/10.1016/j.imlet.2013.07.007</a>
  chicago: Fuertbauer, Elke, Jan Zaujec, Pavel Uhrin, Ingrid Raab, Michele Weber,
    Helga Schachner, Miroslav Bauer, et al. “Thymic Medullar Conduits-Associated Podoplanin
    Promotes Natural Regulatory T Cells.” <i>Immunology Letters</i>. Elsevier, 2013.
    <a href="https://doi.org/10.1016/j.imlet.2013.07.007">https://doi.org/10.1016/j.imlet.2013.07.007</a>.
  ieee: E. Fuertbauer <i>et al.</i>, “Thymic medullar conduits-associated podoplanin
    promotes natural regulatory T cells,” <i>Immunology Letters</i>, vol. 154, no.
    1–2. Elsevier, pp. 31–41, 2013.
  ista: Fuertbauer E, Zaujec J, Uhrin P, Raab I, Weber M, Schachner H, Bauer M, Schütz
    G, Binder B, Sixt MK, Kerjaschki D, Stockinger H. 2013. Thymic medullar conduits-associated
    podoplanin promotes natural regulatory T cells. Immunology Letters. 154(1–2),
    31–41.
  mla: Fuertbauer, Elke, et al. “Thymic Medullar Conduits-Associated Podoplanin Promotes
    Natural Regulatory T Cells.” <i>Immunology Letters</i>, vol. 154, no. 1–2, Elsevier,
    2013, pp. 31–41, doi:<a href="https://doi.org/10.1016/j.imlet.2013.07.007">10.1016/j.imlet.2013.07.007</a>.
  short: E. Fuertbauer, J. Zaujec, P. Uhrin, I. Raab, M. Weber, H. Schachner, M. Bauer,
    G. Schütz, B. Binder, M.K. Sixt, D. Kerjaschki, H. Stockinger, Immunology Letters
    154 (2013) 31–41.
date_created: 2018-12-11T11:46:57Z
date_published: 2013-07-01T00:00:00Z
date_updated: 2021-01-12T08:01:22Z
day: '01'
department:
- _id: MiSi
doi: 10.1016/j.imlet.2013.07.007
intvolume: '       154'
issue: 1-2
language:
- iso: eng
month: '07'
oa_version: None
page: 31 - 41
publication: Immunology Letters
publication_status: published
publisher: Elsevier
publist_id: '7300'
quality_controlled: '1'
scopus_import: 1
status: public
title: Thymic medullar conduits-associated podoplanin promotes natural regulatory
  T cells
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 154
year: '2013'
...
---
_id: '527'
abstract:
- lang: eng
  text: The apical-basal axis of the early plant embryo determines the body plan of
    the adult organism. To establish a polarized embryonic axis, plants evolved a
    unique mechanism that involves directional, cell-to-cell transport of the growth
    regulator auxin. Auxin transport relies on PIN auxin transporters [1], whose polar
    subcellular localization determines the flow directionality. PIN-mediated auxin
    transport mediates the spatial and temporal activity of the auxin response machinery
    [2-7] that contributes to embryo patterning processes, including establishment
    of the apical (shoot) and basal (root) embryo poles [8]. However, little is known
    of upstream mechanisms guiding the (re)polarization of auxin fluxes during embryogenesis
    [9]. Here, we developed a model of plant embryogenesis that correctly generates
    emergent cell polarities and auxin-mediated sequential initiation of apical-basal
    axis of plant embryo. The model relies on two precisely localized auxin sources
    and a feedback between auxin and the polar, subcellular PIN transporter localization.
    Simulations reproduced PIN polarity and auxin distribution, as well as previously
    unknown polarization events during early embryogenesis. The spectrum of validated
    model predictions suggests that our model corresponds to a minimal mechanistic
    framework for initiation and orientation of the apical-basal axis to guide both
    embryonic and postembryonic plant development.
author:
- first_name: Krzysztof T
  full_name: Wabnik, Krzysztof T
  id: 4DE369A4-F248-11E8-B48F-1D18A9856A87
  last_name: Wabnik
  orcid: 0000-0001-7263-0560
- first_name: Hélène
  full_name: Robert, Hélène
  last_name: Robert
- first_name: Richard
  full_name: Smith, Richard
  last_name: Smith
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Wabnik KT, Robert H, Smith R, Friml J. Modeling framework for the establishment
    of the apical-basal embryonic axis in plants. <i>Current Biology</i>. 2013;23(24):2513-2518.
    doi:<a href="https://doi.org/10.1016/j.cub.2013.10.038">10.1016/j.cub.2013.10.038</a>
  apa: Wabnik, K. T., Robert, H., Smith, R., &#38; Friml, J. (2013). Modeling framework
    for the establishment of the apical-basal embryonic axis in plants. <i>Current
    Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2013.10.038">https://doi.org/10.1016/j.cub.2013.10.038</a>
  chicago: Wabnik, Krzysztof T, Hélène Robert, Richard Smith, and Jiří Friml. “Modeling
    Framework for the Establishment of the Apical-Basal Embryonic Axis in Plants.”
    <i>Current Biology</i>. Cell Press, 2013. <a href="https://doi.org/10.1016/j.cub.2013.10.038">https://doi.org/10.1016/j.cub.2013.10.038</a>.
  ieee: K. T. Wabnik, H. Robert, R. Smith, and J. Friml, “Modeling framework for the
    establishment of the apical-basal embryonic axis in plants,” <i>Current Biology</i>,
    vol. 23, no. 24. Cell Press, pp. 2513–2518, 2013.
  ista: Wabnik KT, Robert H, Smith R, Friml J. 2013. Modeling framework for the establishment
    of the apical-basal embryonic axis in plants. Current Biology. 23(24), 2513–2518.
  mla: Wabnik, Krzysztof T., et al. “Modeling Framework for the Establishment of the
    Apical-Basal Embryonic Axis in Plants.” <i>Current Biology</i>, vol. 23, no. 24,
    Cell Press, 2013, pp. 2513–18, doi:<a href="https://doi.org/10.1016/j.cub.2013.10.038">10.1016/j.cub.2013.10.038</a>.
  short: K.T. Wabnik, H. Robert, R. Smith, J. Friml, Current Biology 23 (2013) 2513–2518.
date_created: 2018-12-11T11:46:58Z
date_published: 2013-12-16T00:00:00Z
date_updated: 2021-01-12T08:01:24Z
day: '16'
department:
- _id: EvBe
- _id: JiFr
doi: 10.1016/j.cub.2013.10.038
ec_funded: 1
intvolume: '        23'
issue: '24'
language:
- iso: eng
month: '12'
oa_version: None
page: 2513 - 2518
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '7292'
quality_controlled: '1'
scopus_import: 1
status: public
title: Modeling framework for the establishment of the apical-basal embryonic axis
  in plants
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2013'
...
---
_id: '528'
abstract:
- lang: eng
  text: Establishment of the embryonic axis foreshadows the main body axis of adults
    both in plants and in animals, but underlying mechanisms are considered distinct.
    Plants utilize directional, cell-to-cell transport of the growth hormone auxin
    [1, 2] to generate an asymmetric auxin response that specifies the embryonic apical-basal
    axis [3-6]. The auxin flow directionality depends on the polarized subcellular
    localization of PIN-FORMED (PIN) auxin transporters [7, 8]. It remains unknown
    which mechanisms and spatial cues guide cell polarization and axis orientation
    in early embryos. Herein, we provide conceptually novel insights into the formation
    of embryonic axis in Arabidopsis by identifying a crucial role of localized tryptophan-dependent
    auxin biosynthesis [9-12]. Local auxin production at the base of young embryos
    and the accompanying PIN7-mediated auxin flow toward the proembryo are required
    for the apical auxin response maximum and the specification of apical embryonic
    structures. Later in embryogenesis, the precisely timed onset of localized apical
    auxin biosynthesis mediates PIN1 polarization, basal auxin response maximum, and
    specification of the root pole. Thus, the tight spatiotemporal control of distinct
    local auxin sources provides a necessary, non-cell-autonomous trigger for the
    coordinated cell polarization and subsequent apical-basal axis orientation during
    embryogenesis and, presumably, also for other polarization events during postembryonic
    plant life [13, 14].
author:
- first_name: Hélène
  full_name: Robert, Hélène
  last_name: Robert
- first_name: Peter
  full_name: Grones, Peter
  id: 399876EC-F248-11E8-B48F-1D18A9856A87
  last_name: Grones
- first_name: Anna
  full_name: Stepanova, Anna
  last_name: Stepanova
- first_name: Linda
  full_name: Robles, Linda
  last_name: Robles
- first_name: Annemarie
  full_name: Lokerse, Annemarie
  last_name: Lokerse
- first_name: Jose
  full_name: Alonso, Jose
  last_name: Alonso
- first_name: Dolf
  full_name: Weijers, Dolf
  last_name: Weijers
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Robert H, Grones P, Stepanova A, et al. Local auxin sources orient the apical
    basal axis in arabidopsis embryos. <i>Current Biology</i>. 2013;23(24):2506-2512.
    doi:<a href="https://doi.org/10.1016/j.cub.2013.09.039">10.1016/j.cub.2013.09.039</a>
  apa: Robert, H., Grones, P., Stepanova, A., Robles, L., Lokerse, A., Alonso, J.,
    … Friml, J. (2013). Local auxin sources orient the apical basal axis in arabidopsis
    embryos. <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2013.09.039">https://doi.org/10.1016/j.cub.2013.09.039</a>
  chicago: Robert, Hélène, Peter Grones, Anna Stepanova, Linda Robles, Annemarie Lokerse,
    Jose Alonso, Dolf Weijers, and Jiří Friml. “Local Auxin Sources Orient the Apical
    Basal Axis in Arabidopsis Embryos.” <i>Current Biology</i>. Cell Press, 2013.
    <a href="https://doi.org/10.1016/j.cub.2013.09.039">https://doi.org/10.1016/j.cub.2013.09.039</a>.
  ieee: H. Robert <i>et al.</i>, “Local auxin sources orient the apical basal axis
    in arabidopsis embryos,” <i>Current Biology</i>, vol. 23, no. 24. Cell Press,
    pp. 2506–2512, 2013.
  ista: Robert H, Grones P, Stepanova A, Robles L, Lokerse A, Alonso J, Weijers D,
    Friml J. 2013. Local auxin sources orient the apical basal axis in arabidopsis
    embryos. Current Biology. 23(24), 2506–2512.
  mla: Robert, Hélène, et al. “Local Auxin Sources Orient the Apical Basal Axis in
    Arabidopsis Embryos.” <i>Current Biology</i>, vol. 23, no. 24, Cell Press, 2013,
    pp. 2506–12, doi:<a href="https://doi.org/10.1016/j.cub.2013.09.039">10.1016/j.cub.2013.09.039</a>.
  short: H. Robert, P. Grones, A. Stepanova, L. Robles, A. Lokerse, J. Alonso, D.
    Weijers, J. Friml, Current Biology 23 (2013) 2506–2512.
date_created: 2018-12-11T11:46:59Z
date_published: 2013-12-16T00:00:00Z
date_updated: 2021-01-12T08:01:25Z
day: '16'
department:
- _id: JiFr
doi: 10.1016/j.cub.2013.09.039
ec_funded: 1
intvolume: '        23'
issue: '24'
language:
- iso: eng
month: '12'
oa_version: None
page: 2506 - 2512
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '7291'
quality_controlled: '1'
scopus_import: 1
status: public
title: Local auxin sources orient the apical basal axis in arabidopsis embryos
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2013'
...
---
_id: '5399'
abstract:
- lang: eng
  text: In this work we present a flexible tool for tumor progression, which simulates
    the evolutionary dynamics of cancer. Tumor progression implements a multi-type
    branching process where the key parameters are the fitness landscape, the mutation
    rate, and the average time of cell division. The fitness of a cancer cell depends
    on the mutations it has accumulated. The input to our tool could be any fitness
    landscape, mutation rate, and cell division time, and the tool produces the growth
    dynamics and all relevant statistics.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Johannes
  full_name: Reiter, Johannes
  id: 4A918E98-F248-11E8-B48F-1D18A9856A87
  last_name: Reiter
  orcid: 0000-0002-0170-7353
- first_name: Ivana
  full_name: Bozic, Ivana
  last_name: Bozic
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: 'Reiter J, Bozic I, Chatterjee K, Nowak M. <i>TTP: Tool for Tumor Progression</i>.
    IST Austria; 2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-104-v1-1">10.15479/AT:IST-2013-104-v1-1</a>'
  apa: 'Reiter, J., Bozic, I., Chatterjee, K., &#38; Nowak, M. (2013). <i>TTP: Tool
    for Tumor Progression</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2013-104-v1-1">https://doi.org/10.15479/AT:IST-2013-104-v1-1</a>'
  chicago: 'Reiter, Johannes, Ivana Bozic, Krishnendu Chatterjee, and Martin Nowak.
    <i>TTP: Tool for Tumor Progression</i>. IST Austria, 2013. <a href="https://doi.org/10.15479/AT:IST-2013-104-v1-1">https://doi.org/10.15479/AT:IST-2013-104-v1-1</a>.'
  ieee: 'J. Reiter, I. Bozic, K. Chatterjee, and M. Nowak, <i>TTP: Tool for Tumor
    Progression</i>. IST Austria, 2013.'
  ista: 'Reiter J, Bozic I, Chatterjee K, Nowak M. 2013. TTP: Tool for Tumor Progression,
    IST Austria, 17p.'
  mla: 'Reiter, Johannes, et al. <i>TTP: Tool for Tumor Progression</i>. IST Austria,
    2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-104-v1-1">10.15479/AT:IST-2013-104-v1-1</a>.'
  short: 'J. Reiter, I. Bozic, K. Chatterjee, M. Nowak, TTP: Tool for Tumor Progression,
    IST Austria, 2013.'
date_created: 2018-12-12T11:39:07Z
date_published: 2013-01-11T00:00:00Z
date_updated: 2023-02-23T10:23:57Z
day: '11'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2013-104-v1-1
file:
- access_level: open_access
  checksum: 2cc8c6e157eca1271128db80bb3dec80
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:20Z
  date_updated: 2020-07-14T12:46:44Z
  file_id: '5542'
  file_name: IST-2013-104-v1+1_tumortool.pdf
  file_size: 1471954
  relation: main_file
file_date_updated: 2020-07-14T12:46:44Z
has_accepted_license: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: '17'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '104'
related_material:
  record:
  - id: '2000'
    relation: later_version
    status: public
status: public
title: 'TTP: Tool for Tumor Progression'
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5400'
abstract:
- lang: eng
  text: We consider partially observable Markov decision processes (POMDPs) with ω-regular
    conditions specified as parity objectives. The class of ω-regular languages extends
    regular languages to infinite strings and provides a robust specification language
    to express all properties used in verification, and parity objectives are canonical
    forms to express ω-regular conditions. The qualitative analysis problem given
    a POMDP and a parity objective asks whether there is a strategy to ensure that
    the objective is satis- fied with probability 1 (resp. positive probability).
    While the qualitative analysis problems are known to be undecidable even for very
    special cases of parity objectives, we establish decidability (with optimal complexity)
    of the qualitative analysis problems for POMDPs with all parity objectives under
    finite- memory strategies. We establish asymptotically optimal (exponential) memory
    bounds and EXPTIME- completeness of the qualitative analysis problems under finite-memory
    strategies for POMDPs with parity objectives.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Chmelik, Martin
  id: 3624234E-F248-11E8-B48F-1D18A9856A87
  last_name: Chmelik
- first_name: Mathieu
  full_name: Tracol, Mathieu
  id: 3F54FA38-F248-11E8-B48F-1D18A9856A87
  last_name: Tracol
citation:
  ama: Chatterjee K, Chmelik M, Tracol M. <i>What Is Decidable about Partially Observable
    Markov Decision Processes with ω-Regular Objectives</i>. IST Austria; 2013. doi:<a
    href="https://doi.org/10.15479/AT:IST-2013-109-v1-1">10.15479/AT:IST-2013-109-v1-1</a>
  apa: Chatterjee, K., Chmelik, M., &#38; Tracol, M. (2013). <i>What is decidable
    about partially observable Markov decision processes with ω-regular objectives</i>.
    IST Austria. <a href="https://doi.org/10.15479/AT:IST-2013-109-v1-1">https://doi.org/10.15479/AT:IST-2013-109-v1-1</a>
  chicago: Chatterjee, Krishnendu, Martin Chmelik, and Mathieu Tracol. <i>What Is
    Decidable about Partially Observable Markov Decision Processes with ω-Regular
    Objectives</i>. IST Austria, 2013. <a href="https://doi.org/10.15479/AT:IST-2013-109-v1-1">https://doi.org/10.15479/AT:IST-2013-109-v1-1</a>.
  ieee: K. Chatterjee, M. Chmelik, and M. Tracol, <i>What is decidable about partially
    observable Markov decision processes with ω-regular objectives</i>. IST Austria,
    2013.
  ista: Chatterjee K, Chmelik M, Tracol M. 2013. What is decidable about partially
    observable Markov decision processes with ω-regular objectives, IST Austria, 41p.
  mla: Chatterjee, Krishnendu, et al. <i>What Is Decidable about Partially Observable
    Markov Decision Processes with ω-Regular Objectives</i>. IST Austria, 2013, doi:<a
    href="https://doi.org/10.15479/AT:IST-2013-109-v1-1">10.15479/AT:IST-2013-109-v1-1</a>.
  short: K. Chatterjee, M. Chmelik, M. Tracol, What Is Decidable about Partially Observable
    Markov Decision Processes with ω-Regular Objectives, IST Austria, 2013.
date_created: 2018-12-12T11:39:07Z
date_published: 2013-02-20T00:00:00Z
date_updated: 2023-02-23T10:36:45Z
day: '20'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2013-109-v1-1
file:
- access_level: open_access
  checksum: cbba40210788a1b22c6cf06433b5ed6f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:06Z
  date_updated: 2020-07-14T12:46:44Z
  file_id: '5467'
  file_name: IST-2013-109-v1+1_What_is_Decidable_about_Partially_Observable_Markov_Decision_Processes_with_ω-Regular_Objectives.pdf
  file_size: 483407
  relation: main_file
file_date_updated: 2020-07-14T12:46:44Z
has_accepted_license: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '41'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '109'
related_material:
  record:
  - id: '1477'
    relation: later_version
    status: public
  - id: '2295'
    relation: later_version
    status: public
status: public
title: What is decidable about partially observable Markov decision processes with
  ω-regular objectives
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5401'
abstract:
- lang: eng
  text: This document is created as a part of the project “Repository for Research
    Data at IST Austria”. It summarises the actual initiatives, projects and standards
    related to the project. It supports the preparation of standards and specifications
    for the project, which should be considered and followed to ensure interoperability
    and visibility of the uploaded data.
author:
- first_name: Jana
  full_name: Porsche, Jana
  id: 3252EDC2-F248-11E8-B48F-1D18A9856A87
  last_name: Porsche
citation:
  ama: Porsche J. <i>Initiatives and Projects Related to RD</i>. IST Austria; 2013.
  apa: Porsche, J. (2013). <i>Initiatives and projects related to RD</i>. IST Austria.
  chicago: Porsche, Jana. <i>Initiatives and Projects Related to RD</i>. IST Austria,
    2013.
  ieee: J. Porsche, <i>Initiatives and projects related to RD</i>. IST Austria, 2013.
  ista: Porsche J. 2013. Initiatives and projects related to RD, IST Austria,p.
  mla: Porsche, Jana. <i>Initiatives and Projects Related to RD</i>. IST Austria,
    2013.
  short: J. Porsche, Initiatives and Projects Related to RD, IST Austria, 2013.
date_created: 2018-12-12T11:39:07Z
date_published: 2013-03-20T00:00:00Z
date_updated: 2020-07-14T23:04:47Z
day: '20'
ddc:
- '020'
department:
- _id: E-Lib
file:
- access_level: open_access
  checksum: d68712db838432ecdacf9ffb1de8f8a6
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:14Z
  date_updated: 2020-07-14T12:46:45Z
  file_id: '5536'
  file_name: IST-2013-113-v1+1_Initiatives_and_projects_related_to_RD.pdf
  file_size: 151208
  relation: main_file
file_date_updated: 2020-07-14T12:46:45Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication_status: published
publisher: IST Austria
pubrep_id: '113'
status: public
title: Initiatives and projects related to RD
type: report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5402'
abstract:
- lang: eng
  text: "Linearizability requires that the outcome of calls by competing threads to
    a concurrent data structure is the same as some sequential execution where each
    thread has exclusive access to the data structure. In an ordered data structure,
    such as a queue or a stack, linearizability is ensured by requiring threads commit
    in the order dictated by the sequential semantics of the data structure; e.g.,
    in a concurrent queue implementation a dequeue can only remove the oldest element.
    \r\nIn this paper, we investigate the impact of this strict ordering, by comparing
    what linearizability allows to what existing implementations do. We first give
    an operational definition for linearizability which allows us to build the most
    general linearizable implementation as a transition system for any given sequential
    specification. We then use this operational definition to categorize linearizable
    implementations based on whether they are bound or free. In a bound implementation,
    whenever all threads observe the same logical state, the updates to the logical
    state and the temporal order of commits coincide. All existing queue implementations
    we know of are bound. We then proceed to present, to the best of our knowledge,
    the first ever free queue implementation. Our experiments show that free implementations
    have the potential for better performance by suffering less from contention."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Ali
  full_name: Sezgin, Ali
  id: 4C7638DA-F248-11E8-B48F-1D18A9856A87
  last_name: Sezgin
citation:
  ama: Henzinger TA, Sezgin A. <i>How Free Is Your Linearizable Concurrent Data Structure?</i>
    IST Austria; 2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-123-v1-1">10.15479/AT:IST-2013-123-v1-1</a>
  apa: Henzinger, T. A., &#38; Sezgin, A. (2013). <i>How free is your linearizable
    concurrent data structure?</i> IST Austria. <a href="https://doi.org/10.15479/AT:IST-2013-123-v1-1">https://doi.org/10.15479/AT:IST-2013-123-v1-1</a>
  chicago: Henzinger, Thomas A, and Ali Sezgin. <i>How Free Is Your Linearizable Concurrent
    Data Structure?</i> IST Austria, 2013. <a href="https://doi.org/10.15479/AT:IST-2013-123-v1-1">https://doi.org/10.15479/AT:IST-2013-123-v1-1</a>.
  ieee: T. A. Henzinger and A. Sezgin, <i>How free is your linearizable concurrent
    data structure?</i> IST Austria, 2013.
  ista: Henzinger TA, Sezgin A. 2013. How free is your linearizable concurrent data
    structure?, IST Austria, 16p.
  mla: Henzinger, Thomas A., and Ali Sezgin. <i>How Free Is Your Linearizable Concurrent
    Data Structure?</i> IST Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-123-v1-1">10.15479/AT:IST-2013-123-v1-1</a>.
  short: T.A. Henzinger, A. Sezgin, How Free Is Your Linearizable Concurrent Data
    Structure?, IST Austria, 2013.
date_created: 2018-12-12T11:39:07Z
date_published: 2013-06-12T00:00:00Z
date_updated: 2020-07-14T23:04:47Z
day: '12'
ddc:
- '000'
- '004'
department:
- _id: ToHe
doi: 10.15479/AT:IST-2013-123-v1-1
file:
- access_level: open_access
  checksum: ce580605ae9756a8c99d7b403ebb8eed
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:19Z
  date_updated: 2020-07-14T12:46:45Z
  file_id: '5480'
  file_name: IST-2013-123-v1+1_main-concur2013.pdf
  file_size: 249790
  relation: main_file
file_date_updated: 2020-07-14T12:46:45Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: '16'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '123'
status: public
title: How free is your linearizable concurrent data structure?
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5403'
abstract:
- lang: eng
  text: 'We consider concurrent games played by two-players on a finite state graph,
    where in every round the players simultaneously choose a move, and the current
    state along with the joint moves determine the successor state. We study the most
    fundamental objective for concurrent games, namely, mean-payoff or limit-average
    objective, where a reward is associated to every transition, and the goal of player
    1 is to maximize the long-run average of the rewards, and the objective of player
    2 is strictly the opposite (i.e., the games are zero-sum). The path constraint
    for player 1 could be qualitative, i.e., the mean-payoff is the maximal reward,
    or arbitrarily close to it; or quantitative, i.e., a given threshold between the
    minimal and maximal reward. We consider the computation of the almost-sure (resp.
    positive) winning sets, where player 1 can ensure that the path constraint is
    satisfied with probability 1 (resp. positive probability). Almost-sure winning
    with qualitative constraint exactly corresponds to the question whether there
    exists a strategy to ensure that the payoff is the maximal reward of the game.
    Our main results for qualitative path constraints are as follows: (1) we establish
    qualitative determinacy results that show for every state either player 1 has
    a strategy to ensure almost-sure (resp. positive) winning against all player-2
    strategies or player 2 has a spoiling strategy to falsify almost-sure (resp. positive)
    winning against all player-1 strategies; (2) we present optimal strategy complexity
    results that precisely characterize the classes of strategies required for almost-sure
    and positive winning for both players; and (3) we present quadratic time algorithms
    to compute the almost-sure and the positive winning sets, matching the best known
    bound of the algorithms for much simpler problems (such as reachability objectives).
    For quantitative constraints we show that a polynomial time solution for the almost-sure
    or the positive winning set would imply a solution to a long-standing open problem
    (of solving the value problem of mean-payoff games) that is not known to be in
    polynomial time.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Rasmus
  full_name: Ibsen-Jensen, Rasmus
  id: 3B699956-F248-11E8-B48F-1D18A9856A87
  last_name: Ibsen-Jensen
  orcid: 0000-0003-4783-0389
citation:
  ama: Chatterjee K, Ibsen-Jensen R. <i>Qualitative Analysis of Concurrent Mean-Payoff
    Games</i>. IST Austria; 2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-126-v1-1">10.15479/AT:IST-2013-126-v1-1</a>
  apa: Chatterjee, K., &#38; Ibsen-Jensen, R. (2013). <i>Qualitative analysis of concurrent
    mean-payoff games</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2013-126-v1-1">https://doi.org/10.15479/AT:IST-2013-126-v1-1</a>
  chicago: Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. <i>Qualitative Analysis
    of Concurrent Mean-Payoff Games</i>. IST Austria, 2013. <a href="https://doi.org/10.15479/AT:IST-2013-126-v1-1">https://doi.org/10.15479/AT:IST-2013-126-v1-1</a>.
  ieee: K. Chatterjee and R. Ibsen-Jensen, <i>Qualitative analysis of concurrent mean-payoff
    games</i>. IST Austria, 2013.
  ista: Chatterjee K, Ibsen-Jensen R. 2013. Qualitative analysis of concurrent mean-payoff
    games, IST Austria, 33p.
  mla: Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. <i>Qualitative Analysis of
    Concurrent Mean-Payoff Games</i>. IST Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-126-v1-1">10.15479/AT:IST-2013-126-v1-1</a>.
  short: K. Chatterjee, R. Ibsen-Jensen, Qualitative Analysis of Concurrent Mean-Payoff
    Games, IST Austria, 2013.
date_created: 2018-12-12T11:39:08Z
date_published: 2013-07-03T00:00:00Z
date_updated: 2023-02-23T12:22:53Z
day: '03'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2013-126-v1-1
file:
- access_level: open_access
  checksum: 063868c665beec37bf28160e2a695746
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:49Z
  date_updated: 2020-07-14T12:46:45Z
  file_id: '5510'
  file_name: IST-2013-126-v1+1_soda_full.pdf
  file_size: 434523
  relation: main_file
file_date_updated: 2020-07-14T12:46:45Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '33'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '126'
related_material:
  record:
  - id: '524'
    relation: later_version
    status: public
status: public
title: Qualitative analysis of concurrent mean-payoff games
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5404'
abstract:
- lang: eng
  text: 'We study finite-state two-player (zero-sum) concurrent mean-payoff games
    played on a graph. We focus on the important sub-class of ergodic games where
    all states are visited infinitely often with probability 1. The algorithmic study
    of ergodic games was initiated in a seminal work of Hoffman and Karp in 1966,
    but all basic complexity questions have remained unresolved. Our main results
    for ergodic games are as follows: We establish (1) an optimal exponential bound
    on the patience of stationary strategies (where patience of a distribution is
    the inverse of the smallest positive probability and represents a complexity measure
    of a stationary strategy); (2) the approximation problem lie in FNP; (3) the approximation
    problem is at least as hard as the decision problem for simple stochastic games
    (for which NP and coNP is the long-standing best known bound). We show that the
    exact value can be expressed in the existential theory of the reals, and also
    establish square-root sum hardness for a related class of games.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Rasmus
  full_name: Ibsen-Jensen, Rasmus
  id: 3B699956-F248-11E8-B48F-1D18A9856A87
  last_name: Ibsen-Jensen
  orcid: 0000-0003-4783-0389
citation:
  ama: Chatterjee K, Ibsen-Jensen R. <i>The Complexity of Ergodic Games</i>. IST Austria;
    2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-127-v1-1">10.15479/AT:IST-2013-127-v1-1</a>
  apa: Chatterjee, K., &#38; Ibsen-Jensen, R. (2013). <i>The complexity of ergodic
    games</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2013-127-v1-1">https://doi.org/10.15479/AT:IST-2013-127-v1-1</a>
  chicago: Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. <i>The Complexity of Ergodic
    Games</i>. IST Austria, 2013. <a href="https://doi.org/10.15479/AT:IST-2013-127-v1-1">https://doi.org/10.15479/AT:IST-2013-127-v1-1</a>.
  ieee: K. Chatterjee and R. Ibsen-Jensen, <i>The complexity of ergodic games</i>.
    IST Austria, 2013.
  ista: Chatterjee K, Ibsen-Jensen R. 2013. The complexity of ergodic games, IST Austria,
    29p.
  mla: Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. <i>The Complexity of Ergodic
    Games</i>. IST Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-127-v1-1">10.15479/AT:IST-2013-127-v1-1</a>.
  short: K. Chatterjee, R. Ibsen-Jensen, The Complexity of Ergodic Games, IST Austria,
    2013.
date_created: 2018-12-12T11:39:08Z
date_published: 2013-07-03T00:00:00Z
date_updated: 2023-02-23T10:30:55Z
day: '03'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2013-127-v1-1
file:
- access_level: open_access
  checksum: 79ee5e677a82611ce06e0360c69d494a
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:35Z
  date_updated: 2020-07-14T12:46:45Z
  file_id: '5496'
  file_name: IST-2013-127-v1+1_ergodic.pdf
  file_size: 517275
  relation: main_file
file_date_updated: 2020-07-14T12:46:45Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '29'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '127'
related_material:
  record:
  - id: '2162'
    relation: later_version
    status: public
status: public
title: The complexity of ergodic games
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5405'
abstract:
- lang: eng
  text: "The theory of graph games is the foundation for modeling and synthesizing
    reactive processes. In the synthesis of stochastic processes, we use 2-1/2-player
    games where some transitions of the game graph are controlled by two adversarial
    players, the System and the Environment, and the other transitions are determined
    probabilistically. We consider 2-1/2-player games where the objective of the System
    is the conjunction of a qualitative objective (specified as a parity condition)
    and a quantitative objective (specified as a mean-payoff condition). We establish
    that the problem of deciding whether the System can ensure that the probability
    to satisfy the mean-payoff parity objective is at least a given threshold is in
    NP ∩ coNP, matching the best known bound in the special case of 2-player games
    (where all transitions are deterministic) with only parity objectives, or with
    only mean-payoff objectives. We present an algorithm running\r\nin time O(d ·
    n^{2d}·MeanGame) to compute the set of almost-sure winning states from which the
    objective\r\ncan be ensured with probability 1, where n is the number of states
    of the game, d the number of priorities\r\nof the parity objective, and MeanGame
    is the complexity to compute the set of almost-sure winning states\r\nin 2-1/2-player
    mean-payoff games. Our results are useful in the synthesis of stochastic reactive
    systems\r\nwith both functional requirement (given as a qualitative objective)
    and performance requirement (given\r\nas a quantitative objective)."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
- first_name: Hugo
  full_name: Gimbert, Hugo
  last_name: Gimbert
- first_name: Youssouf
  full_name: Oualhadj, Youssouf
  last_name: Oualhadj
citation:
  ama: Chatterjee K, Doyen L, Gimbert H, Oualhadj Y. <i>Perfect-Information Stochastic
    Mean-Payoff Parity Games</i>. IST Austria; 2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-128-v1-1">10.15479/AT:IST-2013-128-v1-1</a>
  apa: Chatterjee, K., Doyen, L., Gimbert, H., &#38; Oualhadj, Y. (2013). <i>Perfect-information
    stochastic mean-payoff parity games</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2013-128-v1-1">https://doi.org/10.15479/AT:IST-2013-128-v1-1</a>
  chicago: Chatterjee, Krishnendu, Laurent Doyen, Hugo Gimbert, and Youssouf Oualhadj.
    <i>Perfect-Information Stochastic Mean-Payoff Parity Games</i>. IST Austria, 2013.
    <a href="https://doi.org/10.15479/AT:IST-2013-128-v1-1">https://doi.org/10.15479/AT:IST-2013-128-v1-1</a>.
  ieee: K. Chatterjee, L. Doyen, H. Gimbert, and Y. Oualhadj, <i>Perfect-information
    stochastic mean-payoff parity games</i>. IST Austria, 2013.
  ista: Chatterjee K, Doyen L, Gimbert H, Oualhadj Y. 2013. Perfect-information stochastic
    mean-payoff parity games, IST Austria, 22p.
  mla: Chatterjee, Krishnendu, et al. <i>Perfect-Information Stochastic Mean-Payoff
    Parity Games</i>. IST Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-128-v1-1">10.15479/AT:IST-2013-128-v1-1</a>.
  short: K. Chatterjee, L. Doyen, H. Gimbert, Y. Oualhadj, Perfect-Information Stochastic
    Mean-Payoff Parity Games, IST Austria, 2013.
date_created: 2018-12-12T11:39:09Z
date_published: 2013-07-08T00:00:00Z
date_updated: 2023-02-23T10:33:08Z
day: '08'
ddc:
- '000'
- '005'
- '510'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2013-128-v1-1
file:
- access_level: open_access
  checksum: ede787a10e74e4f7db302fab8f12f3ca
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:54Z
  date_updated: 2020-07-14T12:46:45Z
  file_id: '5516'
  file_name: IST-2013-128-v1+1_full_stoch_mpp.pdf
  file_size: 387467
  relation: main_file
file_date_updated: 2020-07-14T12:46:45Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '22'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '128'
related_material:
  record:
  - id: '2212'
    relation: later_version
    status: public
status: public
title: Perfect-information stochastic mean-payoff parity games
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5406'
abstract:
- lang: eng
  text: 'We consider the distributed synthesis problem fortemporal logic specifications.
    Traditionally, the problem has been studied for LTL, and the previous results
    show that the problem is decidable iff there is no information fork in the architecture.
    We consider the problem for fragments of LTLand our main results are as follows:
    (1) We show that the problem is undecidable for architectures with information
    forks even for the fragment of LTL with temporal operators restricted to next
    and eventually. (2) For specifications restricted to globally along with non-nested
    next operators, we establish decidability (in EXPSPACE) for star architectures
    where the processes receive disjoint inputs, whereas we establish undecidability
    for architectures containing an information fork-meet structure. (3)Finally, we
    consider LTL without the next operator, and establish decidability (NEXPTIME-complete)
    for all architectures for a fragment that consists of a set of safety assumptions,
    and a set of guarantees where each guarantee is a safety, reachability, or liveness
    condition.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Jan
  full_name: Otop, Jan
  id: 2FC5DA74-F248-11E8-B48F-1D18A9856A87
  last_name: Otop
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
citation:
  ama: Chatterjee K, Henzinger TA, Otop J, Pavlogiannis A. <i>Distributed Synthesis
    for LTL Fragments</i>. IST Austria; 2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-130-v1-1">10.15479/AT:IST-2013-130-v1-1</a>
  apa: Chatterjee, K., Henzinger, T. A., Otop, J., &#38; Pavlogiannis, A. (2013).
    <i>Distributed synthesis for LTL Fragments</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2013-130-v1-1">https://doi.org/10.15479/AT:IST-2013-130-v1-1</a>
  chicago: Chatterjee, Krishnendu, Thomas A Henzinger, Jan Otop, and Andreas Pavlogiannis.
    <i>Distributed Synthesis for LTL Fragments</i>. IST Austria, 2013. <a href="https://doi.org/10.15479/AT:IST-2013-130-v1-1">https://doi.org/10.15479/AT:IST-2013-130-v1-1</a>.
  ieee: K. Chatterjee, T. A. Henzinger, J. Otop, and A. Pavlogiannis, <i>Distributed
    synthesis for LTL Fragments</i>. IST Austria, 2013.
  ista: Chatterjee K, Henzinger TA, Otop J, Pavlogiannis A. 2013. Distributed synthesis
    for LTL Fragments, IST Austria, 11p.
  mla: Chatterjee, Krishnendu, et al. <i>Distributed Synthesis for LTL Fragments</i>.
    IST Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-130-v1-1">10.15479/AT:IST-2013-130-v1-1</a>.
  short: K. Chatterjee, T.A. Henzinger, J. Otop, A. Pavlogiannis, Distributed Synthesis
    for LTL Fragments, IST Austria, 2013.
date_created: 2018-12-12T11:39:09Z
date_published: 2013-07-08T00:00:00Z
date_updated: 2023-02-21T17:01:26Z
day: '08'
ddc:
- '005'
department:
- _id: KrCh
- _id: ToHe
doi: 10.15479/AT:IST-2013-130-v1-1
file:
- access_level: open_access
  checksum: 855513ebaf6f72228800c5fdb522f93c
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:18Z
  date_updated: 2020-07-14T12:46:45Z
  file_id: '5540'
  file_name: IST-2013-130-v1+1_Distributed_Synthesis.pdf
  file_size: 467895
  relation: main_file
file_date_updated: 2020-07-14T12:46:45Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '11'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '130'
related_material:
  record:
  - id: '1376'
    relation: later_version
    status: public
status: public
title: Distributed synthesis for LTL Fragments
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5407'
abstract:
- lang: eng
  text: This document is created as a part of the project “Repository for Research
    Data at IST Austria”. It summarises the mandatory features, which need to be fulfilled
    to provide an institutional repository as a platform and also a service to the
    scientists at the institute. It also includes optional features, which would be
    of strong benefit for the scientists and would increase the usage of the repository,
    and hence the visibility of research at IST Austria.
author:
- first_name: Jana
  full_name: Porsche, Jana
  id: 3252EDC2-F248-11E8-B48F-1D18A9856A87
  last_name: Porsche
citation:
  ama: Porsche J. <i>Technical Requirements and Features</i>. IST Austria; 2013.
  apa: Porsche, J. (2013). <i>Technical requirements and features</i>. IST Austria.
  chicago: Porsche, Jana. <i>Technical Requirements and Features</i>. IST Austria,
    2013.
  ieee: J. Porsche, <i>Technical requirements and features</i>. IST Austria, 2013.
  ista: Porsche J. 2013. Technical requirements and features, IST Austria,p.
  mla: Porsche, Jana. <i>Technical Requirements and Features</i>. IST Austria, 2013.
  short: J. Porsche, Technical Requirements and Features, IST Austria, 2013.
date_created: 2018-12-12T11:39:09Z
date_published: 2013-07-13T00:00:00Z
date_updated: 2020-07-14T23:07:51Z
day: '13'
ddc:
- '020'
department:
- _id: E-Lib
file:
- access_level: open_access
  checksum: 9e4f9abf79a56f651f0012a34909880f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:02Z
  date_updated: 2020-07-14T12:46:46Z
  file_id: '5463'
  file_name: IST-2013-135-v1+1_Features.pdf
  file_size: 90311
  relation: main_file
file_date_updated: 2020-07-14T12:46:46Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication_status: published
publisher: IST Austria
pubrep_id: '135'
status: public
title: Technical requirements and features
type: report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5408'
abstract:
- lang: eng
  text: "We consider two-player partial-observation stochastic games where player
    1 has partial observation and player 2 has perfect observation. The winning condition
    we study are omega-regular conditions specified as parity objectives. The qualitative
    analysis problem given a partial-observation stochastic game and a parity objective
    asks whether  there is a strategy to ensure that the objective is satisfied with
    probability 1 (resp. positive probability). While the qualitative analysis problems
    are known to be undecidable even for very special cases of parity objectives,
    they were shown to be decidable in 2EXPTIME under finite-memory  strategies. We
    improve the complexity and show that the qualitative analysis problems for partial-observation
    stochastic parity games under finite-memory strategies are \r\nEXPTIME-complete;
    and also establish optimal (exponential) memory bounds for finite-memory strategies
    required for qualitative analysis. "
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
- first_name: Sumit
  full_name: Nain, Sumit
  last_name: Nain
- first_name: Moshe
  full_name: Vardi, Moshe
  last_name: Vardi
citation:
  ama: Chatterjee K, Doyen L, Nain S, Vardi M. <i>The Complexity of Partial-Observation
    Stochastic Parity Games with Finite-Memory Strategies</i>. IST Austria; 2013.
    doi:<a href="https://doi.org/10.15479/AT:IST-2013-141-v1-1">10.15479/AT:IST-2013-141-v1-1</a>
  apa: Chatterjee, K., Doyen, L., Nain, S., &#38; Vardi, M. (2013). <i>The complexity
    of partial-observation stochastic parity games with finite-memory strategies</i>.
    IST Austria. <a href="https://doi.org/10.15479/AT:IST-2013-141-v1-1">https://doi.org/10.15479/AT:IST-2013-141-v1-1</a>
  chicago: Chatterjee, Krishnendu, Laurent Doyen, Sumit Nain, and Moshe Vardi. <i>The
    Complexity of Partial-Observation Stochastic Parity Games with Finite-Memory Strategies</i>.
    IST Austria, 2013. <a href="https://doi.org/10.15479/AT:IST-2013-141-v1-1">https://doi.org/10.15479/AT:IST-2013-141-v1-1</a>.
  ieee: K. Chatterjee, L. Doyen, S. Nain, and M. Vardi, <i>The complexity of partial-observation
    stochastic parity games with finite-memory strategies</i>. IST Austria, 2013.
  ista: Chatterjee K, Doyen L, Nain S, Vardi M. 2013. The complexity of partial-observation
    stochastic parity games with finite-memory strategies, IST Austria, 17p.
  mla: Chatterjee, Krishnendu, et al. <i>The Complexity of Partial-Observation Stochastic
    Parity Games with Finite-Memory Strategies</i>. IST Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-141-v1-1">10.15479/AT:IST-2013-141-v1-1</a>.
  short: K. Chatterjee, L. Doyen, S. Nain, M. Vardi, The Complexity of Partial-Observation
    Stochastic Parity Games with Finite-Memory Strategies, IST Austria, 2013.
date_created: 2018-12-12T11:39:10Z
date_published: 2013-09-12T00:00:00Z
date_updated: 2023-02-23T10:33:11Z
day: '12'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2013-141-v1-1
file:
- access_level: open_access
  checksum: 226bc791124f8d3138379778ce834e86
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:16Z
  date_updated: 2020-07-14T12:46:46Z
  file_id: '5477'
  file_name: IST-2013-141-v1+1_main-tech-rpt.pdf
  file_size: 300481
  relation: main_file
file_date_updated: 2020-07-14T12:46:46Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '17'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '141'
related_material:
  record:
  - id: '2213'
    relation: later_version
    status: public
status: public
title: The complexity of partial-observation stochastic parity games with finite-memory
  strategies
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5409'
abstract:
- lang: eng
  text: "The edit distance between two (untimed) traces is the minimum cost of a sequence
    of edit operations (insertion, deletion, or substitution) needed to transform
    one trace to the other. Edit distances have been extensively studied in the untimed
    setting, and form the basis for approximate matching of sequences in different
    domains such as coding theory, parsing, and speech recognition. \r\nIn this paper,
    we lift the study of edit distances from untimed languages to the timed setting.
    We define an edit distance between timed words which incorporates both the edit
    distance between the untimed words and the absolute difference in timestamps.
    Our edit distance between two timed words is computable in polynomial time. Further,
    we show that the edit distance between a timed word and a timed language generated
    by a timed automaton, defined as the edit distance between the word and the closest
    word in the language, is PSPACE-complete. While computing the edit distance between
    two timed automata is undecidable, we show that the approximate version, where
    we decide if the edit distance between two timed automata is either less than
    a given parameter or more than delta away from the parameter, for delta>0, can
    be solved in exponential space and is EXPSPACE-hard. Our definitions and techniques
    can be generalized to the setting of hybrid systems, and we show analogous decidability
    results for rectangular automata."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Rasmus
  full_name: Ibsen-Jensen, Rasmus
  id: 3B699956-F248-11E8-B48F-1D18A9856A87
  last_name: Ibsen-Jensen
  orcid: 0000-0003-4783-0389
- first_name: Rupak
  full_name: Majumdar, Rupak
  last_name: Majumdar
citation:
  ama: Chatterjee K, Ibsen-Jensen R, Majumdar R. <i>Edit Distance for Timed Automata</i>.
    IST Austria; 2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-144-v1-1">10.15479/AT:IST-2013-144-v1-1</a>
  apa: Chatterjee, K., Ibsen-Jensen, R., &#38; Majumdar, R. (2013). <i>Edit distance
    for timed automata</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2013-144-v1-1">https://doi.org/10.15479/AT:IST-2013-144-v1-1</a>
  chicago: Chatterjee, Krishnendu, Rasmus Ibsen-Jensen, and Rupak Majumdar. <i>Edit
    Distance for Timed Automata</i>. IST Austria, 2013. <a href="https://doi.org/10.15479/AT:IST-2013-144-v1-1">https://doi.org/10.15479/AT:IST-2013-144-v1-1</a>.
  ieee: K. Chatterjee, R. Ibsen-Jensen, and R. Majumdar, <i>Edit distance for timed
    automata</i>. IST Austria, 2013.
  ista: Chatterjee K, Ibsen-Jensen R, Majumdar R. 2013. Edit distance for timed automata,
    IST Austria, 12p.
  mla: Chatterjee, Krishnendu, et al. <i>Edit Distance for Timed Automata</i>. IST
    Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-144-v1-1">10.15479/AT:IST-2013-144-v1-1</a>.
  short: K. Chatterjee, R. Ibsen-Jensen, R. Majumdar, Edit Distance for Timed Automata,
    IST Austria, 2013.
date_created: 2018-12-12T11:39:10Z
date_published: 2013-10-30T00:00:00Z
date_updated: 2023-02-23T10:33:18Z
day: '30'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2013-144-v1-1
file:
- access_level: open_access
  checksum: 0f7633081ba8299c543322f0ad08571f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:08Z
  date_updated: 2020-07-14T12:46:46Z
  file_id: '5469'
  file_name: IST-2013-144-v1+1_main.pdf
  file_size: 336377
  relation: main_file
file_date_updated: 2020-07-14T12:46:46Z
has_accepted_license: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: '12'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '144'
related_material:
  record:
  - id: '2216'
    relation: later_version
    status: public
status: public
title: Edit distance for timed automata
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5410'
abstract:
- lang: eng
  text: "Board games, like Tic-Tac-Toe and CONNECT-4, play an important role not only
    in development of mathematical and logical skills, but also in emotional and social
    development. In this paper, we address the problem of generating targeted starting
    positions for such games. This can facilitate new approaches for bringing novice
    players to mastery, and also leads to discovery of interesting game variants.
    \r\nOur approach generates starting states of varying hardness levels for player
    1 in a two-player board game, given rules of the board game, the desired number
    of steps required for player 1 to win, and the expertise levels of the two players.
    Our approach leverages symbolic methods and iterative simulation to efficiently
    search the extremely large state space. We present experimental results that include
    discovery of states of varying hardness levels for several simple grid-based board
    games. Also, the presence of such states for standard game variants like Tic-Tac-Toe
    on board size 4x4 opens up new games to be played that have not been played for
    ages since the default start state is heavily biased. "
alternative_title:
- IST Austria Technical Report
author:
- first_name: Umair
  full_name: Ahmed, Umair
  last_name: Ahmed
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Sumit
  full_name: Gulwani, Sumit
  last_name: Gulwani
citation:
  ama: Ahmed U, Chatterjee K, Gulwani S. <i>Automatic Generation of Alternative Starting
    Positions for Traditional Board Games</i>. IST Austria; 2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-146-v1-1">10.15479/AT:IST-2013-146-v1-1</a>
  apa: Ahmed, U., Chatterjee, K., &#38; Gulwani, S. (2013). <i>Automatic generation
    of alternative starting positions for traditional board games</i>. IST Austria.
    <a href="https://doi.org/10.15479/AT:IST-2013-146-v1-1">https://doi.org/10.15479/AT:IST-2013-146-v1-1</a>
  chicago: Ahmed, Umair, Krishnendu Chatterjee, and Sumit Gulwani. <i>Automatic Generation
    of Alternative Starting Positions for Traditional Board Games</i>. IST Austria,
    2013. <a href="https://doi.org/10.15479/AT:IST-2013-146-v1-1">https://doi.org/10.15479/AT:IST-2013-146-v1-1</a>.
  ieee: U. Ahmed, K. Chatterjee, and S. Gulwani, <i>Automatic generation of alternative
    starting positions for traditional board games</i>. IST Austria, 2013.
  ista: Ahmed U, Chatterjee K, Gulwani S. 2013. Automatic generation of alternative
    starting positions for traditional board games, IST Austria, 13p.
  mla: Ahmed, Umair, et al. <i>Automatic Generation of Alternative Starting Positions
    for Traditional Board Games</i>. IST Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-146-v1-1">10.15479/AT:IST-2013-146-v1-1</a>.
  short: U. Ahmed, K. Chatterjee, S. Gulwani, Automatic Generation of Alternative
    Starting Positions for Traditional Board Games, IST Austria, 2013.
date_created: 2018-12-12T11:39:10Z
date_published: 2013-12-03T00:00:00Z
date_updated: 2023-02-23T10:00:50Z
day: '03'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2013-146-v1-1
file:
- access_level: open_access
  checksum: 409f3aaaf1184e4057b89cbb449dac80
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:06Z
  date_updated: 2020-07-14T12:46:46Z
  file_id: '5528'
  file_name: IST-2013-146-v1+1_main.pdf
  file_size: 818189
  relation: main_file
file_date_updated: 2020-07-14T12:46:46Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: '13'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '146'
related_material:
  record:
  - id: '1481'
    relation: later_version
    status: public
status: public
title: Automatic generation of alternative starting positions for traditional board
  games
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5747'
article_processing_charge: No
author:
- first_name: Cezara
  full_name: Dragoi, Cezara
  id: 2B2B5ED0-F248-11E8-B48F-1D18A9856A87
  last_name: Dragoi
- first_name: Ashutosh
  full_name: Gupta, Ashutosh
  id: 335E5684-F248-11E8-B48F-1D18A9856A87
  last_name: Gupta
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
citation:
  ama: 'Dragoi C, Gupta A, Henzinger TA. Automatic Linearizability Proofs of Concurrent
    Objects with Cooperating Updates. In: <i>Computer Aided Verification</i>. Vol
    8044. CAV. Berlin, Heidelberg: Springer Berlin Heidelberg; 2013:174-190. doi:<a
    href="https://doi.org/10.1007/978-3-642-39799-8_11">10.1007/978-3-642-39799-8_11</a>'
  apa: 'Dragoi, C., Gupta, A., &#38; Henzinger, T. A. (2013). Automatic Linearizability
    Proofs of Concurrent Objects with Cooperating Updates. In <i>Computer Aided Verification</i>
    (Vol. 8044, pp. 174–190). Berlin, Heidelberg: Springer Berlin Heidelberg. <a href="https://doi.org/10.1007/978-3-642-39799-8_11">https://doi.org/10.1007/978-3-642-39799-8_11</a>'
  chicago: 'Dragoi, Cezara, Ashutosh Gupta, and Thomas A Henzinger. “Automatic Linearizability
    Proofs of Concurrent Objects with Cooperating Updates.” In <i>Computer Aided Verification</i>,
    8044:174–90. CAV. Berlin, Heidelberg: Springer Berlin Heidelberg, 2013. <a href="https://doi.org/10.1007/978-3-642-39799-8_11">https://doi.org/10.1007/978-3-642-39799-8_11</a>.'
  ieee: 'C. Dragoi, A. Gupta, and T. A. Henzinger, “Automatic Linearizability Proofs
    of Concurrent Objects with Cooperating Updates,” in <i>Computer Aided Verification</i>,
    vol. 8044, Berlin, Heidelberg: Springer Berlin Heidelberg, 2013, pp. 174–190.'
  ista: 'Dragoi C, Gupta A, Henzinger TA. 2013.Automatic Linearizability Proofs of
    Concurrent Objects with Cooperating Updates. In: Computer Aided Verification.
    vol. 8044, 174–190.'
  mla: Dragoi, Cezara, et al. “Automatic Linearizability Proofs of Concurrent Objects
    with Cooperating Updates.” <i>Computer Aided Verification</i>, vol. 8044, Springer
    Berlin Heidelberg, 2013, pp. 174–90, doi:<a href="https://doi.org/10.1007/978-3-642-39799-8_11">10.1007/978-3-642-39799-8_11</a>.
  short: C. Dragoi, A. Gupta, T.A. Henzinger, in:, Computer Aided Verification, Springer
    Berlin Heidelberg, Berlin, Heidelberg, 2013, pp. 174–190.
conference:
  end_date: 2013-07-19
  location: Saint Petersburg, Russia
  name: CAV 2013
  start_date: 2013-07-13
date_created: 2018-12-18T13:10:21Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2023-09-05T14:16:07Z
ddc:
- '005'
department:
- _id: ToHe
doi: 10.1007/978-3-642-39799-8_11
ec_funded: 1
file:
- access_level: open_access
  checksum: a901cc6b71db08b61c0d4c0cbacc6287
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-18T13:13:33Z
  date_updated: 2020-07-14T12:47:10Z
  file_id: '5748'
  file_name: 2013_CAV_Dragoi.pdf
  file_size: 236480
  relation: main_file
file_date_updated: 2020-07-14T12:47:10Z
has_accepted_license: '1'
intvolume: '      8044'
language:
- iso: eng
oa: 1
oa_version: None
page: 174-190
place: Berlin, Heidelberg
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication: Computer Aided Verification
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783642397981'
  - '9783642397998'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Berlin Heidelberg
pubrep_id: '195'
quality_controlled: '1'
scopus_import: '1'
series_title: CAV
status: public
title: Automatic Linearizability Proofs of Concurrent Objects with Cooperating Updates
type: book_chapter
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 8044
year: '2013'
...
---
_id: '6440'
abstract:
- lang: eng
  text: In order to guarantee that each method of a data structure updates the logical
    state exactly once, al-most all non-blocking implementations employ Compare-And-Swap
    (CAS) based synchronization. For FIFO  queue  implementations  this  translates  into  concurrent  enqueue  or  dequeue  methods
    competing among themselves to update the same variable, the tail or the head,
    respectively, leading to high contention and poor scalability. Recent non-blocking
    queue implementations try to alleviate high contentionby increasing the number
    of contention points, all the while using CAS-based synchronization. Furthermore,
    obtaining a wait-free implementation with competition is achieved by additional
    synchronization which leads to further degradation of performance.In this paper
    we formalize the notion of competitiveness of a synchronizing statement which
    can beused as a measure for the scalability of concurrent implementations.  We
    present a new queue implementation, the Speculative Pairing (SP) queue, which,
    as we show, decreases competitiveness by using Fetch-And-Increment (FAI) instead
    of CAS. We prove that the SP queue is linearizable and lock-free.We also show
    that replacing CAS with FAI leads to wait-freedom for dequeue methods without
    an adverse effect on performance.  In fact, our experiments suggest that the SP
    queue can perform and scale better than the state-of-the-art queue implementations.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Hannes
  full_name: Payer, Hannes
  last_name: Payer
- first_name: Ali
  full_name: Sezgin, Ali
  id: 4C7638DA-F248-11E8-B48F-1D18A9856A87
  last_name: Sezgin
citation:
  ama: Henzinger TA, Payer H, Sezgin A. <i>Replacing Competition with Cooperation
    to Achieve Scalable Lock-Free FIFO Queues </i>. IST Austria; 2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-124-v1-1">10.15479/AT:IST-2013-124-v1-1</a>
  apa: Henzinger, T. A., Payer, H., &#38; Sezgin, A. (2013). <i>Replacing competition
    with cooperation to achieve scalable lock-free FIFO queues </i>. IST Austria.
    <a href="https://doi.org/10.15479/AT:IST-2013-124-v1-1">https://doi.org/10.15479/AT:IST-2013-124-v1-1</a>
  chicago: Henzinger, Thomas A, Hannes Payer, and Ali Sezgin. <i>Replacing Competition
    with Cooperation to Achieve Scalable Lock-Free FIFO Queues </i>. IST Austria,
    2013. <a href="https://doi.org/10.15479/AT:IST-2013-124-v1-1">https://doi.org/10.15479/AT:IST-2013-124-v1-1</a>.
  ieee: T. A. Henzinger, H. Payer, and A. Sezgin, <i>Replacing competition with cooperation
    to achieve scalable lock-free FIFO queues </i>. IST Austria, 2013.
  ista: Henzinger TA, Payer H, Sezgin A. 2013. Replacing competition with cooperation
    to achieve scalable lock-free FIFO queues , IST Austria, 23p.
  mla: Henzinger, Thomas A., et al. <i>Replacing Competition with Cooperation to Achieve
    Scalable Lock-Free FIFO Queues </i>. IST Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-124-v1-1">10.15479/AT:IST-2013-124-v1-1</a>.
  short: T.A. Henzinger, H. Payer, A. Sezgin, Replacing Competition with Cooperation
    to Achieve Scalable Lock-Free FIFO Queues , IST Austria, 2013.
date_created: 2019-05-13T14:13:27Z
date_published: 2013-06-13T00:00:00Z
date_updated: 2020-07-14T23:06:19Z
day: '13'
ddc:
- '000'
- '005'
department:
- _id: ToHe
doi: 10.15479/AT:IST-2013-124-v1-1
file:
- access_level: open_access
  checksum: a219ba4eada6cd62befed52262ee15d4
  content_type: application/pdf
  creator: dernst
  date_created: 2019-05-13T14:11:39Z
  date_updated: 2020-07-14T12:47:30Z
  file_id: '6441'
  file_name: 2013_TechRep_Henzinger.pdf
  file_size: 549684
  relation: main_file
file_date_updated: 2020-07-14T12:47:30Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: '23'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '124'
status: public
title: 'Replacing competition with cooperation to achieve scalable lock-free FIFO
  queues '
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
