---
_id: '13314'
abstract:
- lang: eng
text: The emergence of large-scale order in self-organized systems relies on local
interactions between individual components. During bacterial cell division, FtsZ—a
prokaryotic homologue of the eukaryotic protein tubulin—polymerizes into treadmilling
filaments that further organize into a cytoskeletal ring. In vitro, FtsZ filaments
can form dynamic chiral assemblies. However, how the active and passive properties
of individual filaments relate to these large-scale self-organized structures
remains poorly understood. Here we connect single-filament properties with the
mesoscopic scale by combining minimal active matter simulations and biochemical
reconstitution experiments. We show that the density and flexibility of active
chiral filaments define their global order. At intermediate densities, curved,
flexible filaments organize into chiral rings and polar bands. An effectively
nematic organization dominates for high densities and for straight, mutant filaments
with increased rigidity. Our predicted phase diagram quantitatively captures these
features, demonstrating how the flexibility, density and chirality of the active
filaments affect their collective behaviour. Our findings shed light on the fundamental
properties of active chiral matter and explain how treadmilling FtsZ filaments
organize during bacterial cell division.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
acknowledgement: 'This work was supported by the European Research Council through
grant ERC 2015-StG-679239 and by the Austrian Science Fund (FWF) StandAlone P34607
to M.L., B. P.M. was also supported by the Kanazawa University WPI- NanoLSI Bio-SPM
collaborative research program. Z.D. has received funding from Doctoral Programme
of the Austrian Academy of Sciences (OeAW): Grant agreement 26360. We thank Jan
Brugues (MPI CBG, Dresden, Germany), Andela Saric (ISTA, Klosterneuburg, Austria),
Daniel Pearce (Uni Geneva, Switzerland) for valuable scientific input and comments
on the manuscript. We are also thankful for the support by the Scientific Service
Units (SSU) of IST Austria through resources provided by the Imaging and Optics
Facility (IOF) and the Lab Support Facility (LSF).'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Zuzana
full_name: Dunajova, Zuzana
id: 4B39F286-F248-11E8-B48F-1D18A9856A87
last_name: Dunajova
- first_name: Batirtze
full_name: Prats Mateu, Batirtze
id: 299FE892-F248-11E8-B48F-1D18A9856A87
last_name: Prats Mateu
- first_name: Philipp
full_name: Radler, Philipp
id: 40136C2A-F248-11E8-B48F-1D18A9856A87
last_name: Radler
orcid: '0000-0001-9198-2182 '
- first_name: Keesiang
full_name: Lim, Keesiang
last_name: Lim
- first_name: Dörte
full_name: Brandis, Dörte
id: 21d64d35-f128-11eb-9611-b8bcca7a12fd
last_name: Brandis
- first_name: Philipp
full_name: Velicky, Philipp
id: 39BDC62C-F248-11E8-B48F-1D18A9856A87
last_name: Velicky
orcid: 0000-0002-2340-7431
- first_name: Johann G
full_name: Danzl, Johann G
id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
last_name: Danzl
orcid: 0000-0001-8559-3973
- first_name: Richard W.
full_name: Wong, Richard W.
last_name: Wong
- first_name: Jens
full_name: Elgeti, Jens
last_name: Elgeti
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Martin
full_name: Loose, Martin
id: 462D4284-F248-11E8-B48F-1D18A9856A87
last_name: Loose
orcid: 0000-0001-7309-9724
citation:
ama: Dunajova Z, Prats Mateu B, Radler P, et al. Chiral and nematic phases of flexible
active filaments. Nature Physics. 2023;19:1916-1926. doi:10.1038/s41567-023-02218-w
apa: Dunajova, Z., Prats Mateu, B., Radler, P., Lim, K., Brandis, D., Velicky, P.,
… Loose, M. (2023). Chiral and nematic phases of flexible active filaments. Nature
Physics. Springer Nature. https://doi.org/10.1038/s41567-023-02218-w
chicago: Dunajova, Zuzana, Batirtze Prats Mateu, Philipp Radler, Keesiang Lim, Dörte
Brandis, Philipp Velicky, Johann G Danzl, et al. “Chiral and Nematic Phases of
Flexible Active Filaments.” Nature Physics. Springer Nature, 2023. https://doi.org/10.1038/s41567-023-02218-w.
ieee: Z. Dunajova et al., “Chiral and nematic phases of flexible active filaments,”
Nature Physics, vol. 19. Springer Nature, pp. 1916–1926, 2023.
ista: Dunajova Z, Prats Mateu B, Radler P, Lim K, Brandis D, Velicky P, Danzl JG,
Wong RW, Elgeti J, Hannezo EB, Loose M. 2023. Chiral and nematic phases of flexible
active filaments. Nature Physics. 19, 1916–1926.
mla: Dunajova, Zuzana, et al. “Chiral and Nematic Phases of Flexible Active Filaments.”
Nature Physics, vol. 19, Springer Nature, 2023, pp. 1916–26, doi:10.1038/s41567-023-02218-w.
short: Z. Dunajova, B. Prats Mateu, P. Radler, K. Lim, D. Brandis, P. Velicky, J.G.
Danzl, R.W. Wong, J. Elgeti, E.B. Hannezo, M. Loose, Nature Physics 19 (2023)
1916–1926.
date_created: 2023-07-27T14:44:45Z
date_published: 2023-12-01T00:00:00Z
date_updated: 2024-02-21T12:19:08Z
day: '01'
ddc:
- '530'
department:
- _id: JoDa
- _id: EdHa
- _id: MaLo
- _id: GradSch
doi: 10.1038/s41567-023-02218-w
ec_funded: 1
external_id:
pmid:
- '38075437'
file:
- access_level: open_access
checksum: bc7673ca07d37309013a86166577b2f7
content_type: application/pdf
creator: dernst
date_created: 2024-01-30T14:28:30Z
date_updated: 2024-01-30T14:28:30Z
file_id: '14916'
file_name: 2023_NaturePhysics_Dunajova.pdf
file_size: 22471673
relation: main_file
success: 1
file_date_updated: 2024-01-30T14:28:30Z
has_accepted_license: '1'
intvolume: ' 19'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '12'
oa: 1
oa_version: Published Version
page: 1916-1926
pmid: 1
project:
- _id: 2595697A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '679239'
name: Self-Organization of the Bacterial Cell
- _id: fc38323b-9c52-11eb-aca3-ff8afb4a011d
grant_number: P34607
name: "Understanding bacterial cell division by in vitro\r\nreconstitution"
- _id: 34d75525-11ca-11ed-8bc3-89b6307fee9d
grant_number: '26360'
name: Motile active matter models of migrating cells and chiral filaments
publication: Nature Physics
publication_identifier:
eissn:
- 1745-2481
issn:
- 1745-2473
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '13116'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Chiral and nematic phases of flexible active filaments
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 19
year: '2023'
...
---
_id: '13315'
abstract:
- lang: eng
text: How do statistical dependencies in measurement noise influence high-dimensional
inference? To answer this, we study the paradigmatic spiked matrix model of principal
components analysis (PCA), where a rank-one matrix is corrupted by additive noise.
We go beyond the usual independence assumption on the noise entries, by drawing
the noise from a low-order polynomial orthogonal matrix ensemble. The resulting
noise correlations make the setting relevant for applications but analytically
challenging. We provide characterization of the Bayes optimal limits of inference
in this model. If the spike is rotation invariant, we show that standard spectral
PCA is optimal. However, for more general priors, both PCA and the existing approximate
message-passing algorithm (AMP) fall short of achieving the information-theoretic
limits, which we compute using the replica method from statistical physics. We
thus propose an AMP, inspired by the theory of adaptive Thouless–Anderson–Palmer
equations, which is empirically observed to saturate the conjectured theoretical
limit. This AMP comes with a rigorous state evolution analysis tracking its performance.
Although we focus on specific noise distributions, our methodology can be generalized
to a wide class of trace matrix ensembles at the cost of more involved expressions.
Finally, despite the seemingly strong assumption of rotation-invariant noise,
our theory empirically predicts algorithmic performance on real data, pointing
at strong universality properties.
acknowledgement: J.B. was funded by the European Union (ERC, CHORAL, project number
101039794). Views and opinions expressed are however those of the author(s) only
and do not necessarily reflect those of the European Union or the European Research
Council. Neither the European Union nor the granting authority can be held responsible
for them. M.M. was supported by the 2019 Lopez-Loreta Prize. We would like to thank
the reviewers for the insightful comments and, in particular, for suggesting the
BAMP-inspired denoisers leading to AMP-AP.
article_number: e2302028120
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Jean
full_name: Barbier, Jean
last_name: Barbier
- first_name: Francesco
full_name: Camilli, Francesco
last_name: Camilli
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
- first_name: Manuel
full_name: Sáenz, Manuel
last_name: Sáenz
citation:
ama: Barbier J, Camilli F, Mondelli M, Sáenz M. Fundamental limits in structured
principal component analysis and how to reach them. Proceedings of the National
Academy of Sciences of the United States of America. 2023;120(30). doi:10.1073/pnas.2302028120
apa: Barbier, J., Camilli, F., Mondelli, M., & Sáenz, M. (2023). Fundamental
limits in structured principal component analysis and how to reach them. Proceedings
of the National Academy of Sciences of the United States of America. National
Academy of Sciences. https://doi.org/10.1073/pnas.2302028120
chicago: Barbier, Jean, Francesco Camilli, Marco Mondelli, and Manuel Sáenz. “Fundamental
Limits in Structured Principal Component Analysis and How to Reach Them.” Proceedings
of the National Academy of Sciences of the United States of America. National
Academy of Sciences, 2023. https://doi.org/10.1073/pnas.2302028120.
ieee: J. Barbier, F. Camilli, M. Mondelli, and M. Sáenz, “Fundamental limits in
structured principal component analysis and how to reach them,” Proceedings
of the National Academy of Sciences of the United States of America, vol.
120, no. 30. National Academy of Sciences, 2023.
ista: Barbier J, Camilli F, Mondelli M, Sáenz M. 2023. Fundamental limits in structured
principal component analysis and how to reach them. Proceedings of the National
Academy of Sciences of the United States of America. 120(30), e2302028120.
mla: Barbier, Jean, et al. “Fundamental Limits in Structured Principal Component
Analysis and How to Reach Them.” Proceedings of the National Academy of Sciences
of the United States of America, vol. 120, no. 30, e2302028120, National Academy
of Sciences, 2023, doi:10.1073/pnas.2302028120.
short: J. Barbier, F. Camilli, M. Mondelli, M. Sáenz, Proceedings of the National
Academy of Sciences of the United States of America 120 (2023).
date_created: 2023-07-30T22:01:02Z
date_published: 2023-07-25T00:00:00Z
date_updated: 2024-09-10T13:03:18Z
day: '25'
ddc:
- '000'
department:
- _id: MaMo
doi: 10.1073/pnas.2302028120
external_id:
pmid:
- '37463204'
file:
- access_level: open_access
checksum: 1fc06228afdb3aa80cf8e7766bcf9dc5
content_type: application/pdf
creator: dernst
date_created: 2023-07-31T07:30:48Z
date_updated: 2023-07-31T07:30:48Z
file_id: '13323'
file_name: 2023_PNAS_Barbier.pdf
file_size: 995933
relation: main_file
success: 1
file_date_updated: 2023-07-31T07:30:48Z
has_accepted_license: '1'
intvolume: ' 120'
issue: '30'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
name: Prix Lopez-Loretta 2019 - Marco Mondelli
publication: Proceedings of the National Academy of Sciences of the United States
of America
publication_identifier:
eissn:
- 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/fcamilli95/Structured-PCA-
scopus_import: '1'
status: public
title: Fundamental limits in structured principal component analysis and how to reach
them
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 120
year: '2023'
...
---
_id: '13316'
abstract:
- lang: eng
text: Although budding yeast has been extensively used as a model organism for studying
organelle functions and intracellular vesicle trafficking, whether it possesses
an independent endocytic early/sorting compartment that sorts endocytic cargos
to the endo-lysosomal pathway or the recycling pathway has long been unclear.
The structure and properties of the endocytic early/sorting compartment differ
significantly between organisms; in plant cells, the trans-Golgi network (TGN)
serves this role, whereas in mammalian cells a separate intracellular structure
performs this function. The yeast syntaxin homolog Tlg2p, widely localizing to
the TGN and endosomal compartments, is presumed to act as a Q-SNARE for endocytic
vesicles, but which compartment is the direct target for endocytic vesicles remained
unanswered. Here we demonstrate by high-speed and high-resolution 4D imaging of
fluorescently labeled endocytic cargos that the Tlg2p-residing compartment within
the TGN functions as the early/sorting compartment. After arriving here, endocytic
cargos are recycled to the plasma membrane or transported to the yeast Rab5-residing
endosomal compartment through the pathway requiring the clathrin adaptors GGAs.
Interestingly, Gga2p predominantly localizes at the Tlg2p-residing compartment,
and the deletion of GGAs has little effect on another TGN region where Sec7p is
present but suppresses dynamics of the Tlg2-residing early/sorting compartment,
indicating that the Tlg2p- and Sec7p-residing regions are discrete entities in
the mutant. Thus, the Tlg2p-residing region seems to serve as an early/sorting
compartment and function independently of the Sec7p-residing region within the
TGN.
acknowledgement: 'This work was supported by JSPS KAKENHI grant #18K062291, and the
Takeda Science Foundation to JYT., as well as JSPS KAKENHI grant #19K065710, the
Takeda Science Foundation, and Life Science Foundation of Japan to JT.'
article_number: e84850
article_processing_charge: Yes
article_type: original
author:
- first_name: Junko Y.
full_name: Toshima, Junko Y.
last_name: Toshima
- first_name: Ayana
full_name: Tsukahara, Ayana
last_name: Tsukahara
- first_name: Makoto
full_name: Nagano, Makoto
last_name: Nagano
- first_name: Takuro
full_name: Tojima, Takuro
last_name: Tojima
- first_name: Daria E
full_name: Siekhaus, Daria E
id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
last_name: Siekhaus
orcid: 0000-0001-8323-8353
- first_name: Akihiko
full_name: Nakano, Akihiko
last_name: Nakano
- first_name: Jiro
full_name: Toshima, Jiro
last_name: Toshima
citation:
ama: Toshima JY, Tsukahara A, Nagano M, et al. The yeast endocytic early/sorting
compartment exists as an independent sub-compartment within the trans-Golgi network.
eLife. 2023;12. doi:10.7554/eLife.84850
apa: Toshima, J. Y., Tsukahara, A., Nagano, M., Tojima, T., Siekhaus, D. E., Nakano,
A., & Toshima, J. (2023). The yeast endocytic early/sorting compartment exists
as an independent sub-compartment within the trans-Golgi network. ELife.
eLife Sciences Publications. https://doi.org/10.7554/eLife.84850
chicago: Toshima, Junko Y., Ayana Tsukahara, Makoto Nagano, Takuro Tojima, Daria
E Siekhaus, Akihiko Nakano, and Jiro Toshima. “The Yeast Endocytic Early/Sorting
Compartment Exists as an Independent Sub-Compartment within the Trans-Golgi Network.”
ELife. eLife Sciences Publications, 2023. https://doi.org/10.7554/eLife.84850.
ieee: J. Y. Toshima et al., “The yeast endocytic early/sorting compartment
exists as an independent sub-compartment within the trans-Golgi network,” eLife,
vol. 12. eLife Sciences Publications, 2023.
ista: Toshima JY, Tsukahara A, Nagano M, Tojima T, Siekhaus DE, Nakano A, Toshima
J. 2023. The yeast endocytic early/sorting compartment exists as an independent
sub-compartment within the trans-Golgi network. eLife. 12, e84850.
mla: Toshima, Junko Y., et al. “The Yeast Endocytic Early/Sorting Compartment Exists
as an Independent Sub-Compartment within the Trans-Golgi Network.” ELife,
vol. 12, e84850, eLife Sciences Publications, 2023, doi:10.7554/eLife.84850.
short: J.Y. Toshima, A. Tsukahara, M. Nagano, T. Tojima, D.E. Siekhaus, A. Nakano,
J. Toshima, ELife 12 (2023).
date_created: 2023-07-30T22:01:02Z
date_published: 2023-07-21T00:00:00Z
date_updated: 2023-12-13T11:37:36Z
day: '21'
ddc:
- '570'
department:
- _id: DaSi
doi: 10.7554/eLife.84850
external_id:
isi:
- '001035372800001'
pmid:
- '37477116'
file:
- access_level: open_access
checksum: 2af111a00cf5e3a956f7f0fd13199b15
content_type: application/pdf
creator: dernst
date_created: 2023-07-31T07:43:00Z
date_updated: 2023-07-31T07:43:00Z
file_id: '13324'
file_name: 2023_eLife_Toshima.pdf
file_size: 11980913
relation: main_file
success: 1
file_date_updated: 2023-07-31T07:43:00Z
has_accepted_license: '1'
intvolume: ' 12'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
eissn:
- 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: The yeast endocytic early/sorting compartment exists as an independent sub-compartment
within the trans-Golgi network
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2023'
...
---
_id: '13317'
abstract:
- lang: eng
text: We prove the Eigenstate Thermalisation Hypothesis (ETH) for local observables
in a typical translation invariant system of quantum spins with L-body interactions,
where L is the number of spins. This mathematically verifies the observation first
made by Santos and Rigol (Phys Rev E 82(3):031130, 2010, https://doi.org/10.1103/PhysRevE.82.031130)
that the ETH may hold for systems with additional translational symmetries for
a naturally restricted class of observables. We also present numerical support
for the same phenomenon for Hamiltonians with local interaction.
acknowledgement: "LE, JH, and VR were supported by ERC Advanced Grant “RMTBeyond”
No. 101020331. SS was supported by KAKENHI Grant Number JP22J14935 from the Japan
Society for the Promotion of Science (JSPS) and Forefront Physics and Mathematics
Program to Drive Transformation (FoPM), a World-leading Innovative Graduate Study
(WINGS) Program, the University of Tokyo.\r\nOpen access funding provided by The
University of Tokyo."
article_number: '128'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Shoki
full_name: Sugimoto, Shoki
last_name: Sugimoto
- first_name: Sven Joscha
full_name: Henheik, Sven Joscha
id: 31d731d7-d235-11ea-ad11-b50331c8d7fb
last_name: Henheik
orcid: 0000-0003-1106-327X
- first_name: Volodymyr
full_name: Riabov, Volodymyr
id: 1949f904-edfb-11eb-afb5-e2dfddabb93b
last_name: Riabov
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
citation:
ama: Sugimoto S, Henheik SJ, Riabov V, Erdös L. Eigenstate thermalisation hypothesis
for translation invariant spin systems. Journal of Statistical Physics.
2023;190(7). doi:10.1007/s10955-023-03132-4
apa: Sugimoto, S., Henheik, S. J., Riabov, V., & Erdös, L. (2023). Eigenstate
thermalisation hypothesis for translation invariant spin systems. Journal of
Statistical Physics. Springer Nature. https://doi.org/10.1007/s10955-023-03132-4
chicago: Sugimoto, Shoki, Sven Joscha Henheik, Volodymyr Riabov, and László Erdös.
“Eigenstate Thermalisation Hypothesis for Translation Invariant Spin Systems.”
Journal of Statistical Physics. Springer Nature, 2023. https://doi.org/10.1007/s10955-023-03132-4.
ieee: S. Sugimoto, S. J. Henheik, V. Riabov, and L. Erdös, “Eigenstate thermalisation
hypothesis for translation invariant spin systems,” Journal of Statistical
Physics, vol. 190, no. 7. Springer Nature, 2023.
ista: Sugimoto S, Henheik SJ, Riabov V, Erdös L. 2023. Eigenstate thermalisation
hypothesis for translation invariant spin systems. Journal of Statistical Physics.
190(7), 128.
mla: Sugimoto, Shoki, et al. “Eigenstate Thermalisation Hypothesis for Translation
Invariant Spin Systems.” Journal of Statistical Physics, vol. 190, no.
7, 128, Springer Nature, 2023, doi:10.1007/s10955-023-03132-4.
short: S. Sugimoto, S.J. Henheik, V. Riabov, L. Erdös, Journal of Statistical Physics
190 (2023).
date_created: 2023-07-30T22:01:02Z
date_published: 2023-07-21T00:00:00Z
date_updated: 2023-12-13T11:38:44Z
day: '21'
ddc:
- '510'
- '530'
department:
- _id: LaEr
doi: 10.1007/s10955-023-03132-4
ec_funded: 1
external_id:
arxiv:
- '2304.04213'
isi:
- '001035677200002'
file:
- access_level: open_access
checksum: c2ef6b2aecfee1ad6d03fab620507c2c
content_type: application/pdf
creator: dernst
date_created: 2023-07-31T07:49:31Z
date_updated: 2023-07-31T07:49:31Z
file_id: '13325'
file_name: 2023_JourStatPhysics_Sugimoto.pdf
file_size: 612755
relation: main_file
success: 1
file_date_updated: 2023-07-31T07:49:31Z
has_accepted_license: '1'
intvolume: ' 190'
isi: 1
issue: '7'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
call_identifier: H2020
grant_number: '101020331'
name: Random matrices beyond Wigner-Dyson-Mehta
publication: Journal of Statistical Physics
publication_identifier:
eissn:
- 1572-9613
issn:
- 0022-4715
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Eigenstate thermalisation hypothesis for translation invariant spin systems
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 190
year: '2023'
...
---
_id: '13318'
abstract:
- lang: eng
text: Bohnenblust–Hille inequalities for Boolean cubes have been proven with dimension-free
constants that grow subexponentially in the degree (Defant et al. in Math Ann
374(1):653–680, 2019). Such inequalities have found great applications in learning
low-degree Boolean functions (Eskenazis and Ivanisvili in Proceedings of the 54th
annual ACM SIGACT symposium on theory of computing, pp 203–207, 2022). Motivated
by learning quantum observables, a qubit analogue of Bohnenblust–Hille inequality
for Boolean cubes was recently conjectured in Rouzé et al. (Quantum Talagrand,
KKL and Friedgut’s theorems and the learnability of quantum Boolean functions,
2022. arXiv preprint arXiv:2209.07279). The conjecture was resolved in Huang et
al. (Learning to predict arbitrary quantum processes, 2022. arXiv preprint arXiv:2210.14894).
In this paper, we give a new proof of these Bohnenblust–Hille inequalities for
qubit system with constants that are dimension-free and of exponential growth
in the degree. As a consequence, we obtain a junta theorem for low-degree polynomials.
Using similar ideas, we also study learning problems of low degree quantum observables
and Bohr’s radius phenomenon on quantum Boolean cubes.
acknowledgement: The research of A.V. is supported by NSF DMS-1900286, DMS-2154402
and by Hausdorff Center for Mathematics. H.Z. is supported by the Lise Meitner fellowship,
Austrian Science Fund (FWF) M3337. This work is partially supported by NSF DMS-1929284
while both authors were in residence at the Institute for Computational and Experimental
Research in Mathematics in Providence, RI, during the Harmonic Analysis and Convexity
program.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Alexander
full_name: Volberg, Alexander
last_name: Volberg
- first_name: Haonan
full_name: Zhang, Haonan
id: D8F41E38-9E66-11E9-A9E2-65C2E5697425
last_name: Zhang
citation:
ama: Volberg A, Zhang H. Noncommutative Bohnenblust–Hille inequalities. Mathematische
Annalen. 2023. doi:10.1007/s00208-023-02680-0
apa: Volberg, A., & Zhang, H. (2023). Noncommutative Bohnenblust–Hille inequalities.
Mathematische Annalen. Springer Nature. https://doi.org/10.1007/s00208-023-02680-0
chicago: Volberg, Alexander, and Haonan Zhang. “Noncommutative Bohnenblust–Hille
Inequalities.” Mathematische Annalen. Springer Nature, 2023. https://doi.org/10.1007/s00208-023-02680-0.
ieee: A. Volberg and H. Zhang, “Noncommutative Bohnenblust–Hille inequalities,”
Mathematische Annalen. Springer Nature, 2023.
ista: Volberg A, Zhang H. 2023. Noncommutative Bohnenblust–Hille inequalities. Mathematische
Annalen.
mla: Volberg, Alexander, and Haonan Zhang. “Noncommutative Bohnenblust–Hille Inequalities.”
Mathematische Annalen, Springer Nature, 2023, doi:10.1007/s00208-023-02680-0.
short: A. Volberg, H. Zhang, Mathematische Annalen (2023).
date_created: 2023-07-30T22:01:03Z
date_published: 2023-07-24T00:00:00Z
date_updated: 2023-12-13T11:36:20Z
day: '24'
department:
- _id: JaMa
doi: 10.1007/s00208-023-02680-0
external_id:
arxiv:
- '2210.14468'
isi:
- '001035665500001'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1007/s00208-023-02680-0
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: eb958bca-77a9-11ec-83b8-c565cb50d8d6
grant_number: M03337
name: Curvature-dimension in noncommutative analysis
publication: Mathematische Annalen
publication_identifier:
eissn:
- 1432-1807
issn:
- 0025-5831
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Noncommutative Bohnenblust–Hille inequalities
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '13319'
abstract:
- lang: eng
text: We prove that the generator of the L2 implementation of a KMS-symmetric quantum
Markov semigroup can be expressed as the square of a derivation with values in
a Hilbert bimodule, extending earlier results by Cipriani and Sauvageot for tracially
symmetric semigroups and the second-named author for GNS-symmetric semigroups.
This result hinges on the introduction of a new completely positive map on the
algebra of bounded operators on the GNS Hilbert space. This transformation maps
symmetric Markov operators to symmetric Markov operators and is essential to obtain
the required inner product on the Hilbert bimodule.
acknowledgement: The authors are grateful to Martijn Caspers for helpful comments
on a preliminary version of this manuscript. M. V. was supported by the NWO Vidi
grant VI.Vidi.192.018 ‘Non-commutative harmonic analysis and rigidity of operator
algebras’. M. W. was funded by the Austrian Science Fund (FWF) under the Esprit
Programme [ESP 156]. For the purpose of Open Access, the authors have applied a
CC BY public copyright licence to any Author Accepted Manuscript (AAM) version arising
from this submission. Open access funding provided by Austrian Science Fund (FWF).
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Matthijs
full_name: Vernooij, Matthijs
last_name: Vernooij
- first_name: Melchior
full_name: Wirth, Melchior
id: 88644358-0A0E-11EA-8FA5-49A33DDC885E
last_name: Wirth
orcid: 0000-0002-0519-4241
citation:
ama: Vernooij M, Wirth M. Derivations and KMS-symmetric quantum Markov semigroups.
Communications in Mathematical Physics. 2023;403:381-416. doi:10.1007/s00220-023-04795-6
apa: Vernooij, M., & Wirth, M. (2023). Derivations and KMS-symmetric quantum
Markov semigroups. Communications in Mathematical Physics. Springer Nature.
https://doi.org/10.1007/s00220-023-04795-6
chicago: Vernooij, Matthijs, and Melchior Wirth. “Derivations and KMS-Symmetric
Quantum Markov Semigroups.” Communications in Mathematical Physics. Springer
Nature, 2023. https://doi.org/10.1007/s00220-023-04795-6.
ieee: M. Vernooij and M. Wirth, “Derivations and KMS-symmetric quantum Markov semigroups,”
Communications in Mathematical Physics, vol. 403. Springer Nature, pp.
381–416, 2023.
ista: Vernooij M, Wirth M. 2023. Derivations and KMS-symmetric quantum Markov semigroups.
Communications in Mathematical Physics. 403, 381–416.
mla: Vernooij, Matthijs, and Melchior Wirth. “Derivations and KMS-Symmetric Quantum
Markov Semigroups.” Communications in Mathematical Physics, vol. 403, Springer
Nature, 2023, pp. 381–416, doi:10.1007/s00220-023-04795-6.
short: M. Vernooij, M. Wirth, Communications in Mathematical Physics 403 (2023)
381–416.
date_created: 2023-07-30T22:01:03Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2024-01-30T12:16:32Z
day: '01'
ddc:
- '510'
department:
- _id: JaMa
doi: 10.1007/s00220-023-04795-6
external_id:
arxiv:
- '2303.15949'
isi:
- '001033655400002'
file:
- access_level: open_access
checksum: cca204e81891270216a0c84eb8bcd398
content_type: application/pdf
creator: dernst
date_created: 2024-01-30T12:15:11Z
date_updated: 2024-01-30T12:15:11Z
file_id: '14905'
file_name: 2023_CommMathPhysics_Vernooij.pdf
file_size: 481209
relation: main_file
success: 1
file_date_updated: 2024-01-30T12:15:11Z
has_accepted_license: '1'
intvolume: ' 403'
isi: 1
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 381-416
project:
- _id: 34c6ea2d-11ca-11ed-8bc3-c04f3c502833
grant_number: ESP156_N
name: Gradient flow techniques for quantum Markov semigroups
publication: Communications in Mathematical Physics
publication_identifier:
eissn:
- 1432-0916
issn:
- 0010-3616
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Derivations and KMS-symmetric quantum Markov semigroups
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 403
year: '2023'
...
---
_id: '13321'
abstract:
- lang: eng
text: We consider the problem of reconstructing the signal and the hidden variables
from observations coming from a multi-layer network with rotationally invariant
weight matrices. The multi-layer structure models inference from deep generative
priors, and the rotational invariance imposed on the weights generalizes the i.i.d.
Gaussian assumption by allowing for a complex correlation structure, which is
typical in applications. In this work, we present a new class of approximate message
passing (AMP) algorithms and give a state evolution recursion which precisely
characterizes their performance in the large system limit. In contrast with the
existing multi-layer VAMP (ML-VAMP) approach, our proposed AMP – dubbed multilayer
rotationally invariant generalized AMP (ML-RI-GAMP) – provides a natural generalization
beyond Gaussian designs, in the sense that it recovers the existing Gaussian AMP
as a special case. Furthermore, ML-RI-GAMP exhibits a significantly lower complexity
than ML-VAMP, as the computationally intensive singular value decomposition is
replaced by an estimation of the moments of the design matrices. Finally, our
numerical results show that this complexity gain comes at little to no cost in
the performance of the algorithm.
acknowledgement: Marco Mondelli was partially supported by the 2019 Lopez-Loreta prize.
article_processing_charge: No
arxiv: 1
author:
- first_name: Yizhou
full_name: Xu, Yizhou
last_name: Xu
- first_name: Tian Qi
full_name: Hou, Tian Qi
last_name: Hou
- first_name: Shan Suo
full_name: Liang, Shan Suo
last_name: Liang
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
citation:
ama: 'Xu Y, Hou TQ, Liang SS, Mondelli M. Approximate message passing for multi-layer
estimation in rotationally invariant models. In: 2023 IEEE Information Theory
Workshop. Institute of Electrical and Electronics Engineers; 2023:294-298.
doi:10.1109/ITW55543.2023.10160238'
apa: 'Xu, Y., Hou, T. Q., Liang, S. S., & Mondelli, M. (2023). Approximate message
passing for multi-layer estimation in rotationally invariant models. In 2023
IEEE Information Theory Workshop (pp. 294–298). Saint-Malo, France: Institute
of Electrical and Electronics Engineers. https://doi.org/10.1109/ITW55543.2023.10160238'
chicago: Xu, Yizhou, Tian Qi Hou, Shan Suo Liang, and Marco Mondelli. “Approximate
Message Passing for Multi-Layer Estimation in Rotationally Invariant Models.”
In 2023 IEEE Information Theory Workshop, 294–98. Institute of Electrical
and Electronics Engineers, 2023. https://doi.org/10.1109/ITW55543.2023.10160238.
ieee: Y. Xu, T. Q. Hou, S. S. Liang, and M. Mondelli, “Approximate message passing
for multi-layer estimation in rotationally invariant models,” in 2023 IEEE
Information Theory Workshop, Saint-Malo, France, 2023, pp. 294–298.
ista: 'Xu Y, Hou TQ, Liang SS, Mondelli M. 2023. Approximate message passing for
multi-layer estimation in rotationally invariant models. 2023 IEEE Information
Theory Workshop. ITW: Information Theory Workshop, 294–298.'
mla: Xu, Yizhou, et al. “Approximate Message Passing for Multi-Layer Estimation
in Rotationally Invariant Models.” 2023 IEEE Information Theory Workshop,
Institute of Electrical and Electronics Engineers, 2023, pp. 294–98, doi:10.1109/ITW55543.2023.10160238.
short: Y. Xu, T.Q. Hou, S.S. Liang, M. Mondelli, in:, 2023 IEEE Information Theory
Workshop, Institute of Electrical and Electronics Engineers, 2023, pp. 294–298.
conference:
end_date: 2023-04-28
location: Saint-Malo, France
name: 'ITW: Information Theory Workshop'
start_date: 2023-04-23
date_created: 2023-07-30T22:01:04Z
date_published: 2023-05-01T00:00:00Z
date_updated: 2024-09-10T13:03:19Z
day: '01'
department:
- _id: MaMo
doi: 10.1109/ITW55543.2023.10160238
external_id:
arxiv:
- '2212.01572'
isi:
- '001031733100053'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2212.01572
month: '05'
oa: 1
oa_version: Preprint
page: 294-298
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
name: Prix Lopez-Loretta 2019 - Marco Mondelli
publication: 2023 IEEE Information Theory Workshop
publication_identifier:
eissn:
- 2475-4218
isbn:
- '9798350301496'
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Approximate message passing for multi-layer estimation in rotationally invariant
models
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '13331'
abstract:
- lang: eng
text: "The extension of extremal combinatorics to the setting of exterior algebra
is a work\r\nin progress that gained attention recently. In this thesis, we study
the combinatorial structure of exterior algebra by introducing a dictionary that
translates the notions from the set systems into the framework of exterior algebra.
We show both generalizations of celebrated Erdös--Ko--Rado theorem and Hilton--Milner
theorem to the setting of exterior algebra in the simplest non-trivial case of
two-forms.\r\n"
alternative_title:
- ISTA Master's Thesis
article_processing_charge: No
author:
- first_name: Seyda
full_name: Köse, Seyda
id: 8ba3170d-dc85-11ea-9058-c4251c96a6eb
last_name: Köse
citation:
ama: Köse S. Exterior algebra and combinatorics. 2023. doi:10.15479/at:ista:13331
apa: Köse, S. (2023). Exterior algebra and combinatorics. Institute of Science
and Technology Austria. https://doi.org/10.15479/at:ista:13331
chicago: Köse, Seyda. “Exterior Algebra and Combinatorics.” Institute of Science
and Technology Austria, 2023. https://doi.org/10.15479/at:ista:13331.
ieee: S. Köse, “Exterior algebra and combinatorics,” Institute of Science and Technology
Austria, 2023.
ista: Köse S. 2023. Exterior algebra and combinatorics. Institute of Science and
Technology Austria.
mla: Köse, Seyda. Exterior Algebra and Combinatorics. Institute of Science
and Technology Austria, 2023, doi:10.15479/at:ista:13331.
short: S. Köse, Exterior Algebra and Combinatorics, Institute of Science and Technology
Austria, 2023.
date_created: 2023-07-31T10:20:55Z
date_published: 2023-07-31T00:00:00Z
date_updated: 2023-10-04T11:54:56Z
day: '31'
ddc:
- '510'
- '516'
degree_awarded: MS
department:
- _id: GradSch
- _id: UlWa
doi: 10.15479/at:ista:13331
file:
- access_level: closed
checksum: 96ee518d796d02af71395622c45de03c
content_type: application/x-zip-compressed
creator: skoese
date_created: 2023-07-31T10:16:32Z
date_updated: 2023-07-31T10:16:32Z
file_id: '13333'
file_name: Exterior Algebra and Combinatorics.zip
file_size: 28684
relation: source_file
- access_level: open_access
checksum: f610f4713f88bc477de576aaa46b114e
content_type: application/pdf
creator: skoese
date_created: 2023-08-03T15:28:55Z
date_updated: 2023-08-03T15:28:55Z
file_id: '13480'
file_name: thesis-pdfa.pdf
file_size: 4953418
relation: main_file
success: 1
file_date_updated: 2023-08-03T15:28:55Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '26'
publication_identifier:
issn:
- 2791-4585
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '12680'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Uli
full_name: Wagner, Uli
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
title: Exterior algebra and combinatorics
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2023'
...
---
_id: '13336'
article_processing_charge: No
author:
- first_name: Maria
full_name: Kleshnina, Maria
id: 4E21749C-F248-11E8-B48F-1D18A9856A87
last_name: Kleshnina
citation:
ama: 'Kleshnina M. kleshnina/stochgames_info: The effect of environmental information
on evolution of cooperation in stochastic games. 2023. doi:10.5281/ZENODO.8059564'
apa: 'Kleshnina, M. (2023). kleshnina/stochgames_info: The effect of environmental
information on evolution of cooperation in stochastic games. Zenodo. https://doi.org/10.5281/ZENODO.8059564'
chicago: 'Kleshnina, Maria. “Kleshnina/Stochgames_info: The Effect of Environmental
Information on Evolution of Cooperation in Stochastic Games.” Zenodo, 2023. https://doi.org/10.5281/ZENODO.8059564.'
ieee: 'M. Kleshnina, “kleshnina/stochgames_info: The effect of environmental information
on evolution of cooperation in stochastic games.” Zenodo, 2023.'
ista: 'Kleshnina M. 2023. kleshnina/stochgames_info: The effect of environmental
information on evolution of cooperation in stochastic games, Zenodo, 10.5281/ZENODO.8059564.'
mla: 'Kleshnina, Maria. Kleshnina/Stochgames_info: The Effect of Environmental
Information on Evolution of Cooperation in Stochastic Games. Zenodo, 2023,
doi:10.5281/ZENODO.8059564.'
short: M. Kleshnina, (2023).
date_created: 2023-07-31T11:30:46Z
date_published: 2023-06-20T00:00:00Z
date_updated: 2025-07-14T09:09:53Z
day: '20'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.5281/ZENODO.8059564
main_file_link:
- open_access: '1'
url: https://doi.org/10.5281/zenodo.8059564
month: '06'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
record:
- id: '13258'
relation: used_in_publication
status: public
status: public
title: 'kleshnina/stochgames_info: The effect of environmental information on evolution
of cooperation in stochastic games'
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '13340'
abstract:
- lang: eng
text: Photoisomerization of azobenzenes from their stable E isomer to the metastable
Z state is the basis of numerous applications of these molecules. However, this
reaction typically requires ultraviolet light, which limits applicability. In
this study, we introduce disequilibration by sensitization under confinement (DESC),
a supramolecular approach to induce the E-to-Z isomerization by using light of
a desired color, including red. DESC relies on a combination of a macrocyclic
host and a photosensitizer, which act together to selectively bind and sensitize
E-azobenzenes for isomerization. The Z isomer lacks strong affinity for and is
expelled from the host, which can then convert additional E-azobenzenes to the
Z state. In this way, the host–photosensitizer complex converts photon energy
into chemical energy in the form of out-of-equilibrium photostationary states,
including ones that cannot be accessed through direct photoexcitation.
acknowledgement: We acknowledge funding from the European Union’s Horizon 2020 Research
and Innovation Program [European Research Council grants 820008 (Ra.K.) and 101045223
(A.P.) and Marie Skłodowska-Curie grants 812868 (J.G.) and 101022777 (T.-P.R.)],
the Academy of Finland [Center of Excellence Programme LIBER grant 346107 (A.P.),
Flagship Programme PREIN grant 320165 (A.P.), and Postdoctoral Researcher grant
340103 (T.-P.R.)], Zuckerman STEM Leadership Program Fellowship (J.R.C.), President’s
PhD Scholarship (M.O.), and the EPSRC [Established Career Fellowship grant EP/R00188X/1
(M.J.F.)].
article_processing_charge: No
article_type: original
author:
- first_name: Julius
full_name: Gemen, Julius
last_name: Gemen
- first_name: Jonathan R.
full_name: Church, Jonathan R.
last_name: Church
- first_name: Tero-Petri
full_name: Ruoko, Tero-Petri
last_name: Ruoko
- first_name: Nikita
full_name: Durandin, Nikita
last_name: Durandin
- first_name: Michał J.
full_name: Białek, Michał J.
last_name: Białek
- first_name: Maren
full_name: Weissenfels, Maren
last_name: Weissenfels
- first_name: Moran
full_name: Feller, Moran
last_name: Feller
- first_name: Miri
full_name: Kazes, Miri
last_name: Kazes
- first_name: Veniamin A.
full_name: Borin, Veniamin A.
last_name: Borin
- first_name: Magdalena
full_name: Odaybat, Magdalena
last_name: Odaybat
- first_name: Rishir
full_name: Kalepu, Rishir
last_name: Kalepu
- first_name: Yael
full_name: Diskin-Posner, Yael
last_name: Diskin-Posner
- first_name: Dan
full_name: Oron, Dan
last_name: Oron
- first_name: Matthew J.
full_name: Fuchter, Matthew J.
last_name: Fuchter
- first_name: Arri
full_name: Priimagi, Arri
last_name: Priimagi
- first_name: Igor
full_name: Schapiro, Igor
last_name: Schapiro
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
citation:
ama: Gemen J, Church JR, Ruoko T-P, et al. Disequilibrating azoarenes by visible-light
sensitization under confinement. Science. 2023;381(6664):1357-1363. doi:10.1126/science.adh9059
apa: Gemen, J., Church, J. R., Ruoko, T.-P., Durandin, N., Białek, M. J., Weissenfels,
M., … Klajn, R. (2023). Disequilibrating azoarenes by visible-light sensitization
under confinement. Science. American Association for the Advancement of
Science. https://doi.org/10.1126/science.adh9059
chicago: Gemen, Julius, Jonathan R. Church, Tero-Petri Ruoko, Nikita Durandin, Michał
J. Białek, Maren Weissenfels, Moran Feller, et al. “Disequilibrating Azoarenes
by Visible-Light Sensitization under Confinement.” Science. American Association
for the Advancement of Science, 2023. https://doi.org/10.1126/science.adh9059.
ieee: J. Gemen et al., “Disequilibrating azoarenes by visible-light sensitization
under confinement,” Science, vol. 381, no. 6664. American Association for
the Advancement of Science, pp. 1357–1363, 2023.
ista: Gemen J, Church JR, Ruoko T-P, Durandin N, Białek MJ, Weissenfels M, Feller
M, Kazes M, Borin VA, Odaybat M, Kalepu R, Diskin-Posner Y, Oron D, Fuchter MJ,
Priimagi A, Schapiro I, Klajn R. 2023. Disequilibrating azoarenes by visible-light
sensitization under confinement. Science. 381(6664), 1357–1363.
mla: Gemen, Julius, et al. “Disequilibrating Azoarenes by Visible-Light Sensitization
under Confinement.” Science, vol. 381, no. 6664, American Association for
the Advancement of Science, 2023, pp. 1357–63, doi:10.1126/science.adh9059.
short: J. Gemen, J.R. Church, T.-P. Ruoko, N. Durandin, M.J. Białek, M. Weissenfels,
M. Feller, M. Kazes, V.A. Borin, M. Odaybat, R. Kalepu, Y. Diskin-Posner, D. Oron,
M.J. Fuchter, A. Priimagi, I. Schapiro, R. Klajn, Science 381 (2023) 1357–1363.
date_created: 2023-08-01T08:26:15Z
date_published: 2023-09-22T00:00:00Z
date_updated: 2023-10-03T08:11:26Z
day: '22'
department:
- _id: RaKl
doi: 10.1126/science.adh9059
intvolume: ' 381'
issue: '6664'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.26434/chemrxiv-2023-gq2h0
month: '09'
oa: 1
oa_version: Preprint
page: 1357-1363
publication: Science
publication_identifier:
eissn:
- 1095-9203
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Disequilibrating azoarenes by visible-light sensitization under confinement
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 381
year: '2023'
...
---
_id: '13342'
abstract:
- lang: eng
text: Motile cells moving in multicellular organisms encounter microenvironments
of locally heterogeneous mechanochemical composition. Individual compositional
parameters like chemotactic signals, adhesiveness, and pore sizes are well known
to be sensed by motile cells, providing individual guidance cues for cellular
pathfinding. However, motile cells encounter diverse mechanochemical signals at
the same time, raising the question of how cells respond to locally diverse and
potentially competing signals on their migration routes. Here, we reveal that
motile amoeboid cells require nuclear repositioning, termed nucleokinesis, for
adaptive pathfinding in heterogeneous mechanochemical microenvironments. Using
mammalian immune cells and the amoebaDictyostelium discoideum,
we discover that frequent, rapid and long-distance nucleokinesis is a basic component
of amoeboid pathfinding, enabling cells to reorientate quickly between locally
competing cues. Amoeboid nucleokinesis comprises a two-step cell polarity switch
and is driven by myosin II-forces, sliding the nucleus from a ‘losing’ to the
‘winning’ leading edge to re-adjust the nuclear to the cellular path. Impaired
nucleokinesis distorts fast path adaptions and causes cellular arrest in the microenvironment.
Our findings establish that nucleokinesis is required for amoeboid cell navigation.
Given that motile single-cell amoebae, many immune cells, and some cancer cells
utilize an amoeboid migration strategy, these results suggest that amoeboid nucleokinesis
underlies cellular navigation during unicellular biology, immunity, and disease.
acknowledgement: We thank Christoph Mayr and Bingzhi Wang for initial experiments
on amoeboid nucleokinesis, Ana-Maria Lennon-Duménil and Aline Yatim for bone marrow
from MyoIIA-Flox*CD11c-Cre mice, Michael Sixt and Aglaja Kopf for EMTB-mCherry,
EB3-mCherry, Lifeact-GFP, Lfc knockout, and Myh9-GFP expressing HoxB8 cells, Malte
Benjamin Braun, Mauricio Ruiz, and Madeleine T. Schmitt for critical reading of
the manuscript, and the Core Facility Bioimaging, the Core Facility Flow Cytometry,
and the Animal Core Facility of the Biomedical Center (BMC) for excellent support.
This study was supported by the Peter Hans Hofschneider Professorship of the foundation
“Stiftung Experimentelle Biomedizin” (to JR), the LMU Institutional Strategy LMU-Excellent
within the framework of the German Excellence Initiative (to JR), and the Deutsche
Forschungsgemeinschaft (DFG; German Research Foundation; SFB914 project A12, to
JR), and the CZI grant DAF2020-225401 (https://doi.org/10.37921/120055ratwvi) from
the Chan Zuckerberg Initiative DAF (to RH; an advised fund of Silicon Valley Community
Foundation (funder https://doi.org/10.13039/100014989)). Open Access funding enabled
and organized by Projekt DEAL.
article_number: e114557
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Janina
full_name: Kroll, Janina
last_name: Kroll
- first_name: Robert
full_name: Hauschild, Robert
id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
last_name: Hauschild
orcid: 0000-0001-9843-3522
- first_name: Arthur
full_name: Kuznetcov, Arthur
last_name: Kuznetcov
- first_name: Kasia
full_name: Stefanowski, Kasia
last_name: Stefanowski
- first_name: Monika D.
full_name: Hermann, Monika D.
last_name: Hermann
- first_name: Jack
full_name: Merrin, Jack
id: 4515C308-F248-11E8-B48F-1D18A9856A87
last_name: Merrin
orcid: 0000-0001-5145-4609
- first_name: Lubuna B
full_name: Shafeek, Lubuna B
id: 3CD37A82-F248-11E8-B48F-1D18A9856A87
last_name: Shafeek
orcid: 0000-0001-7180-6050
- first_name: Annette
full_name: Müller-Taubenberger, Annette
last_name: Müller-Taubenberger
- first_name: Jörg
full_name: Renkawitz, Jörg
id: 3F0587C8-F248-11E8-B48F-1D18A9856A87
last_name: Renkawitz
orcid: 0000-0003-2856-3369
citation:
ama: Kroll J, Hauschild R, Kuznetcov A, et al. Adaptive pathfinding by nucleokinesis
during amoeboid migration. EMBO Journal. 2023. doi:10.15252/embj.2023114557
apa: Kroll, J., Hauschild, R., Kuznetcov, A., Stefanowski, K., Hermann, M. D., Merrin,
J., … Renkawitz, J. (2023). Adaptive pathfinding by nucleokinesis during amoeboid
migration. EMBO Journal. Embo Press. https://doi.org/10.15252/embj.2023114557
chicago: Kroll, Janina, Robert Hauschild, Arthur Kuznetcov, Kasia Stefanowski, Monika
D. Hermann, Jack Merrin, Lubuna B Shafeek, Annette Müller-Taubenberger, and Jörg
Renkawitz. “Adaptive Pathfinding by Nucleokinesis during Amoeboid Migration.”
EMBO Journal. Embo Press, 2023. https://doi.org/10.15252/embj.2023114557.
ieee: J. Kroll et al., “Adaptive pathfinding by nucleokinesis during amoeboid
migration,” EMBO Journal. Embo Press, 2023.
ista: Kroll J, Hauschild R, Kuznetcov A, Stefanowski K, Hermann MD, Merrin J, Shafeek
LB, Müller-Taubenberger A, Renkawitz J. 2023. Adaptive pathfinding by nucleokinesis
during amoeboid migration. EMBO Journal., e114557.
mla: Kroll, Janina, et al. “Adaptive Pathfinding by Nucleokinesis during Amoeboid
Migration.” EMBO Journal, e114557, Embo Press, 2023, doi:10.15252/embj.2023114557.
short: J. Kroll, R. Hauschild, A. Kuznetcov, K. Stefanowski, M.D. Hermann, J. Merrin,
L.B. Shafeek, A. Müller-Taubenberger, J. Renkawitz, EMBO Journal (2023).
date_created: 2023-08-01T08:59:06Z
date_published: 2023-11-21T00:00:00Z
date_updated: 2023-11-27T08:47:45Z
day: '21'
ddc:
- '570'
department:
- _id: NanoFab
- _id: Bio
doi: 10.15252/embj.2023114557
external_id:
pmid:
- '37987147'
file:
- access_level: open_access
checksum: 6261d0041c7e8d284c39712c40079730
content_type: application/pdf
creator: dernst
date_created: 2023-11-27T08:45:56Z
date_updated: 2023-11-27T08:45:56Z
file_id: '14611'
file_name: 2023_EmboJournal_Kroll.pdf
file_size: 4862497
relation: main_file
success: 1
file_date_updated: 2023-11-27T08:45:56Z
has_accepted_license: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
publication: EMBO Journal
publication_identifier:
eissn:
- 1460-2075
issn:
- 0261-4189
publication_status: published
publisher: Embo Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Adaptive pathfinding by nucleokinesis during amoeboid migration
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '13443'
abstract:
- lang: eng
text: 'The ages of solar-like stars have been at the center of many studies such
as exoplanet characterization or Galactic-archeology. While ages are usually computed
from stellar evolution models, relations linking ages to other stellar properties,
such as rotation and magnetic activity, have been investigated. With the large
catalog of 55,232 rotation periods, Prot, and photometric magnetic activity index,
Sph from Kepler data, we have the opportunity to look for such magneto-gyro-chronology
relations. Stellar ages are obtained with two stellar evolution codes that include
treatment of angular momentum evolution, hence using Prot as input in addition
to classical atmospheric parameters. We explore two different ways of predicting
stellar ages on three subsamples with spectroscopic observations: solar analogs,
late-F and G dwarfs, and K dwarfs. We first perform a Bayesian analysis to derive
relations between Sph and ages between 1 and 5 Gyr, and other stellar properties.
For late-F and G dwarfs, and K dwarfs, the multivariate regression favors the
model with Prot and Sph with median differences of 0.1% and 0.2%, respectively.
We also apply Machine Learning techniques with a Random Forest algorithm to predict
ages up to 14 Gyr with the same set of input parameters. For late-F, G and K dwarfs
together, predicted ages are on average within 5.3% of the model ages and improve
to 3.1% when including Prot. These are very promising results for a quick age
estimation for solar-like stars with photometric observations, especially with
current and future space missions.'
acknowledgement: 'This paper includes data collected by the Kepler mission and obtained
from the MAST data archive at the Space Telescope Science Institute (STScI). Funding
for the Kepler mission is provided by the NASA Science Mission Directorate. STScI
is operated by the Association of Universities for Research in Astronomy, Inc.,
under NASA contract NAS 5–26555. We acknowledge that this research was supported
in part by the National Science Foundation under grant No. NSF PHY-1748958. S.M.
acknowledges support from the Spanish Ministry of Science and Innovation (MICINN)
with the Ramón y Cajal fellowship No. RYC-2015-17697, the grant No. PID2019-107061GB-C66,
and through AEI under the Severo Ochoa Centres of Excellence Programme 2020–2023
(CEX2019-000920-S). S.M. and D.G.R. acknowledge support from the Spanish Ministry
of Science and Innovation (MICINN) with the grant No. PID2019-107187GB-I00. Z.R.C.
acknowledges support from National Aeronautics and Space Administration via the
TESS Guest Investigator Program (grant No. 80NSSC18K18584). The work presented here
was partially supported by the NASA grant NNX17AF27G. A.R.G.S. acknowledges the
support by FCT through national funds and by FEDER through COMPETE2020 by the following
grants: UIDB/04434/2020 and UIDP/04434/2020. A.R.G.S. is supported by FCT through
the work contract No. 2020.02480.CEECIND/CP1631/CT0001. R.A.G., L.A., and S.N.B.
acknowledge the support from PLATO and GOLF CNES grants. S.N.B. acknowledges support
from PLATO ASI-INAF agreement No. 2015-019-R.1-2018.'
article_number: '131'
article_processing_charge: Yes
article_type: original
author:
- first_name: Savita
full_name: Mathur, Savita
last_name: Mathur
- first_name: Zachary R.
full_name: Claytor, Zachary R.
last_name: Claytor
- first_name: Ângela R. G.
full_name: Santos, Ângela R. G.
last_name: Santos
- first_name: Rafael A.
full_name: García, Rafael A.
last_name: García
- first_name: Louis
full_name: Amard, Louis
last_name: Amard
- first_name: Lisa Annabelle
full_name: Bugnet, Lisa Annabelle
id: d9edb345-f866-11ec-9b37-d119b5234501
last_name: Bugnet
orcid: 0000-0003-0142-4000
- first_name: Enrico
full_name: Corsaro, Enrico
last_name: Corsaro
- first_name: Alfio
full_name: Bonanno, Alfio
last_name: Bonanno
- first_name: Sylvain N.
full_name: Breton, Sylvain N.
last_name: Breton
- first_name: Diego
full_name: Godoy-Rivera, Diego
last_name: Godoy-Rivera
- first_name: Marc H.
full_name: Pinsonneault, Marc H.
last_name: Pinsonneault
- first_name: Jennifer
full_name: van Saders, Jennifer
last_name: van Saders
citation:
ama: Mathur S, Claytor ZR, Santos ÂRG, et al. Magnetic activity evolution of solar-like
stars. I. Sph–age relation derived from Kepler observations. The Astrophysical
Journal. 2023;952(2). doi:10.3847/1538-4357/acd118
apa: Mathur, S., Claytor, Z. R., Santos, Â. R. G., García, R. A., Amard, L., Bugnet,
L. A., … van Saders, J. (2023). Magnetic activity evolution of solar-like stars.
I. Sph–age relation derived from Kepler observations. The Astrophysical Journal.
American Astronomical Society. https://doi.org/10.3847/1538-4357/acd118
chicago: Mathur, Savita, Zachary R. Claytor, Ângela R. G. Santos, Rafael A. García,
Louis Amard, Lisa Annabelle Bugnet, Enrico Corsaro, et al. “Magnetic Activity
Evolution of Solar-like Stars. I. Sph–Age Relation Derived from Kepler Observations.”
The Astrophysical Journal. American Astronomical Society, 2023. https://doi.org/10.3847/1538-4357/acd118.
ieee: S. Mathur et al., “Magnetic activity evolution of solar-like stars.
I. Sph–age relation derived from Kepler observations,” The Astrophysical Journal,
vol. 952, no. 2. American Astronomical Society, 2023.
ista: Mathur S, Claytor ZR, Santos ÂRG, García RA, Amard L, Bugnet LA, Corsaro E,
Bonanno A, Breton SN, Godoy-Rivera D, Pinsonneault MH, van Saders J. 2023. Magnetic
activity evolution of solar-like stars. I. Sph–age relation derived from Kepler
observations. The Astrophysical Journal. 952(2), 131.
mla: Mathur, Savita, et al. “Magnetic Activity Evolution of Solar-like Stars. I.
Sph–Age Relation Derived from Kepler Observations.” The Astrophysical Journal,
vol. 952, no. 2, 131, American Astronomical Society, 2023, doi:10.3847/1538-4357/acd118.
short: S. Mathur, Z.R. Claytor, Â.R.G. Santos, R.A. García, L. Amard, L.A. Bugnet,
E. Corsaro, A. Bonanno, S.N. Breton, D. Godoy-Rivera, M.H. Pinsonneault, J. van
Saders, The Astrophysical Journal 952 (2023).
date_created: 2023-08-01T14:19:16Z
date_published: 2023-08-01T00:00:00Z
date_updated: 2023-12-13T12:00:15Z
day: '01'
ddc:
- '520'
department:
- _id: LiBu
doi: 10.3847/1538-4357/acd118
external_id:
isi:
- '001034185700001'
file:
- access_level: open_access
checksum: f12452834d7ed6748dbf5ace18af4723
content_type: application/pdf
creator: dernst
date_created: 2023-08-02T07:42:26Z
date_updated: 2023-08-02T07:42:26Z
file_id: '13448'
file_name: 2023_AstrophysicalJour_Mathur.pdf
file_size: 4192386
relation: main_file
success: 1
file_date_updated: 2023-08-02T07:42:26Z
has_accepted_license: '1'
intvolume: ' 952'
isi: 1
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
eissn:
- 1538-4357
issn:
- 0004-637X
publication_status: published
publisher: American Astronomical Society
quality_controlled: '1'
status: public
title: Magnetic activity evolution of solar-like stars. I. Sph–age relation derived
from Kepler observations
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 952
year: '2023'
...
---
_id: '13447'
abstract:
- lang: eng
text: Asteroseismology has transformed stellar astrophysics. Red giant asteroseismology
is a prime example, with oscillation periods and amplitudes that are readily detectable
with time-domain space-based telescopes. These oscillations can be used to infer
masses, ages and radii for large numbers of stars, providing unique constraints
on stellar populations in our galaxy. The cadence, duration, and spatial resolution
of the Roman galactic bulge time-domain survey (GBTDS) are well-suited for asteroseismology
and will probe an important population not studied by prior missions. We identify
photometric precision as a key requirement for realizing the potential of asteroseismology
with Roman. A precision of 1 mmag per 15-min cadence or better for saturated stars
will enable detections of the populous red clump star population in the Galactic
bulge. If the survey efficiency is better than expected, we argue for repeat observations
of the same fields to improve photometric precision, or covering additional fields
to expand the stellar population reach if the photometric precision for saturated
stars is better than 1 mmag. Asteroseismology is relatively insensitive to the
timing of the observations during the mission, and the prime red clump targets
can be observed in a single 70 day campaign in any given field. Complementary
stellar characterization, particularly astrometry tied to the Gaia system, will
also dramatically expand the diagnostic power of asteroseismology. We also highlight
synergies to Roman GBTDS exoplanet science using transits and microlensing.
article_number: '2307.03237'
article_processing_charge: No
arxiv: 1
author:
- first_name: Daniel
full_name: Huber, Daniel
last_name: Huber
- first_name: Marc
full_name: Pinsonneault, Marc
last_name: Pinsonneault
- first_name: Paul
full_name: Beck, Paul
last_name: Beck
- first_name: Timothy R.
full_name: Bedding, Timothy R.
last_name: Bedding
- first_name: Joss Bland-Hawthorn
full_name: Joss Bland-Hawthorn, Joss Bland-Hawthorn
last_name: Joss Bland-Hawthorn
- first_name: Sylvain N.
full_name: Breton, Sylvain N.
last_name: Breton
- first_name: Lisa Annabelle
full_name: Bugnet, Lisa Annabelle
id: d9edb345-f866-11ec-9b37-d119b5234501
last_name: Bugnet
orcid: 0000-0003-0142-4000
- first_name: William J.
full_name: Chaplin, William J.
last_name: Chaplin
- first_name: Rafael A.
full_name: Garcia, Rafael A.
last_name: Garcia
- first_name: Samuel K.
full_name: Grunblatt, Samuel K.
last_name: Grunblatt
- first_name: Joyce A.
full_name: Guzik, Joyce A.
last_name: Guzik
- first_name: Saskia
full_name: Hekker, Saskia
last_name: Hekker
- first_name: Steven D.
full_name: Kawaler, Steven D.
last_name: Kawaler
- first_name: Stephane
full_name: Mathis, Stephane
last_name: Mathis
- first_name: Savita
full_name: Mathur, Savita
last_name: Mathur
- first_name: Travis
full_name: Metcalfe, Travis
last_name: Metcalfe
- first_name: Benoit
full_name: Mosser, Benoit
last_name: Mosser
- first_name: Melissa K.
full_name: Ness, Melissa K.
last_name: Ness
- first_name: Anthony L.
full_name: Piro, Anthony L.
last_name: Piro
- first_name: Aldo
full_name: Serenelli, Aldo
last_name: Serenelli
- first_name: Sanjib
full_name: Sharma, Sanjib
last_name: Sharma
- first_name: David R.
full_name: Soderblom, David R.
last_name: Soderblom
- first_name: Keivan G.
full_name: Stassun, Keivan G.
last_name: Stassun
- first_name: Dennis
full_name: Stello, Dennis
last_name: Stello
- first_name: Jamie
full_name: Tayar, Jamie
last_name: Tayar
- first_name: Gerard T. van
full_name: Belle, Gerard T. van
last_name: Belle
- first_name: Joel C.
full_name: Zinn, Joel C.
last_name: Zinn
citation:
ama: Huber D, Pinsonneault M, Beck P, et al. Asteroseismology with the Roman galactic
bulge time-domain survey. arXiv. doi:10.48550/arXiv.2307.03237
apa: Huber, D., Pinsonneault, M., Beck, P., Bedding, T. R., Joss Bland-Hawthorn,
J. B.-H., Breton, S. N., … Zinn, J. C. (n.d.). Asteroseismology with the Roman
galactic bulge time-domain survey. arXiv. https://doi.org/10.48550/arXiv.2307.03237
chicago: Huber, Daniel, Marc Pinsonneault, Paul Beck, Timothy R. Bedding, Joss Bland-Hawthorn
Joss Bland-Hawthorn, Sylvain N. Breton, Lisa Annabelle Bugnet, et al. “Asteroseismology
with the Roman Galactic Bulge Time-Domain Survey.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2307.03237.
ieee: D. Huber et al., “Asteroseismology with the Roman galactic bulge time-domain
survey,” arXiv. .
ista: Huber D, Pinsonneault M, Beck P, Bedding TR, Joss Bland-Hawthorn JB-H, Breton
SN, Bugnet LA, Chaplin WJ, Garcia RA, Grunblatt SK, Guzik JA, Hekker S, Kawaler
SD, Mathis S, Mathur S, Metcalfe T, Mosser B, Ness MK, Piro AL, Serenelli A, Sharma
S, Soderblom DR, Stassun KG, Stello D, Tayar J, Belle GT van, Zinn JC. Asteroseismology
with the Roman galactic bulge time-domain survey. arXiv, 2307.03237.
mla: Huber, Daniel, et al. “Asteroseismology with the Roman Galactic Bulge Time-Domain
Survey.” ArXiv, 2307.03237, doi:10.48550/arXiv.2307.03237.
short: D. Huber, M. Pinsonneault, P. Beck, T.R. Bedding, J.B.-H. Joss Bland-Hawthorn,
S.N. Breton, L.A. Bugnet, W.J. Chaplin, R.A. Garcia, S.K. Grunblatt, J.A. Guzik,
S. Hekker, S.D. Kawaler, S. Mathis, S. Mathur, T. Metcalfe, B. Mosser, M.K. Ness,
A.L. Piro, A. Serenelli, S. Sharma, D.R. Soderblom, K.G. Stassun, D. Stello, J.
Tayar, G.T. van Belle, J.C. Zinn, ArXiv (n.d.).
date_created: 2023-08-02T07:30:43Z
date_published: 2023-07-06T00:00:00Z
date_updated: 2023-08-02T07:36:00Z
day: '06'
department:
- _id: LiBu
doi: 10.48550/arXiv.2307.03237
external_id:
arxiv:
- '2307.03237'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2307.03237
month: '07'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: Asteroseismology with the Roman galactic bulge time-domain survey
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '13963'
abstract:
- lang: eng
text: The many-body localization (MBL) proximity effect is an intriguing phenomenon
where a thermal bath localizes due to the interaction with a disordered system.
The interplay of thermal and nonergodic behavior in these systems gives rise to
a rich phase diagram, whose exploration is an active field of research. In this
paper, we study a bosonic Hubbard model featuring two particle species representing
the bath and the disordered system. Using state-of-the-art numerical techniques,
we investigate the dynamics of the model in different regimes, based on which
we obtain a tentative phase diagram as a function of coupling strength and bath
size. When the bath is composed of a single particle, we observe clear signatures
of a transition from an MBL proximity effect to a delocalized phase. Increasing
the bath size, however, its thermalizing effect becomes stronger and eventually
the whole system delocalizes in the range of moderate interaction strengths studied.
In this regime, we characterize particle transport, revealing diffusive behavior
of the originally localized bosons.
acknowledgement: "We thank A. A. Michailidis and A. Mirlin for insightful discussions.
P.B., M.L., and M.S. acknowledge support by the European Research Council (ERC)
under the European Union’s Horizon 2020 research and innovation program (Grant Agreement
No. 850899). D.A. was\r\nsupported by the European Research Council (ERC) under
the European Union’s Horizon 2020 research and innovation program (Grant Agreement
No. 864597) and by the Swiss National Science Foundation. P.B., M.L., and M.S. acknowledge
PRACE for awarding us access to Joliot-Curie at GENCI@CEA, France, where the TEBD
simulations were performed. The TEBD simulations were performed using the ITensor
library [60]."
article_number: '054201'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Pietro
full_name: Brighi, Pietro
id: 4115AF5C-F248-11E8-B48F-1D18A9856A87
last_name: Brighi
orcid: 0000-0002-7969-2729
- first_name: Marko
full_name: Ljubotina, Marko
id: F75EE9BE-5C90-11EA-905D-16643DDC885E
last_name: Ljubotina
- first_name: Dmitry A.
full_name: Abanin, Dmitry A.
last_name: Abanin
- first_name: Maksym
full_name: Serbyn, Maksym
id: 47809E7E-F248-11E8-B48F-1D18A9856A87
last_name: Serbyn
orcid: 0000-0002-2399-5827
citation:
ama: Brighi P, Ljubotina M, Abanin DA, Serbyn M. Many-body localization proximity
effect in a two-species bosonic Hubbard model. Physical Review B. 2023;108(5).
doi:10.1103/physrevb.108.054201
apa: Brighi, P., Ljubotina, M., Abanin, D. A., & Serbyn, M. (2023). Many-body
localization proximity effect in a two-species bosonic Hubbard model. Physical
Review B. American Physical Society. https://doi.org/10.1103/physrevb.108.054201
chicago: Brighi, Pietro, Marko Ljubotina, Dmitry A. Abanin, and Maksym Serbyn. “Many-Body
Localization Proximity Effect in a Two-Species Bosonic Hubbard Model.” Physical
Review B. American Physical Society, 2023. https://doi.org/10.1103/physrevb.108.054201.
ieee: P. Brighi, M. Ljubotina, D. A. Abanin, and M. Serbyn, “Many-body localization
proximity effect in a two-species bosonic Hubbard model,” Physical Review B,
vol. 108, no. 5. American Physical Society, 2023.
ista: Brighi P, Ljubotina M, Abanin DA, Serbyn M. 2023. Many-body localization proximity
effect in a two-species bosonic Hubbard model. Physical Review B. 108(5), 054201.
mla: Brighi, Pietro, et al. “Many-Body Localization Proximity Effect in a Two-Species
Bosonic Hubbard Model.” Physical Review B, vol. 108, no. 5, 054201, American
Physical Society, 2023, doi:10.1103/physrevb.108.054201.
short: P. Brighi, M. Ljubotina, D.A. Abanin, M. Serbyn, Physical Review B 108 (2023).
date_created: 2023-08-05T18:25:22Z
date_published: 2023-08-01T00:00:00Z
date_updated: 2023-08-07T09:51:39Z
day: '01'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1103/physrevb.108.054201
ec_funded: 1
external_id:
arxiv:
- '2303.16876'
file:
- access_level: open_access
checksum: f763000339b5fd543c14377109920690
content_type: application/pdf
creator: dernst
date_created: 2023-08-07T09:48:08Z
date_updated: 2023-08-07T09:48:08Z
file_id: '13981'
file_name: 2023_PhysRevB_Brighi.pdf
file_size: 3051398
relation: main_file
success: 1
file_date_updated: 2023-08-07T09:48:08Z
has_accepted_license: '1'
intvolume: ' 108'
issue: '5'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 23841C26-32DE-11EA-91FC-C7463DDC885E
call_identifier: H2020
grant_number: '850899'
name: 'Non-Ergodic Quantum Matter: Universality, Dynamics and Control'
publication: Physical Review B
publication_identifier:
eissn:
- 2469-9969
issn:
- 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Many-body localization proximity effect in a two-species bosonic Hubbard model
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 108
year: '2023'
...
---
_id: '13965'
abstract:
- lang: eng
text: Many modes and mechanisms of epigenetic inheritance have been elucidated in
eukaryotes. Most of them are relatively short-term, generally not exceeding one
or a few organismal generations. However, emerging evidence indicates that one
mechanism, cytosine DNA methylation, can mediate epigenetic inheritance over much
longer timescales, which are mostly or completely inaccessible in the laboratory.
Here we discuss the evidence for, and mechanisms and implications of, such long-term
epigenetic inheritance. We argue that compelling evidence supports the long-term
epigenetic inheritance of gene body methylation, at least in the model angiosperm
Arabidopsis thaliana, and that variation in such methylation can therefore serve
as an epigenetic basis for phenotypic variation in natural populations.
article_number: '102087'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Elizabeth
full_name: Hollwey, Elizabeth
id: b8c4f54b-e484-11eb-8fdc-a54df64ef6dd
last_name: Hollwey
- first_name: Amy
full_name: Briffa, Amy
last_name: Briffa
- first_name: Martin
full_name: Howard, Martin
last_name: Howard
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
citation:
ama: Hollwey E, Briffa A, Howard M, Zilberman D. Concepts, mechanisms and implications
of long-term epigenetic inheritance. Current Opinion in Genetics and Development.
2023;81(8). doi:10.1016/j.gde.2023.102087
apa: Hollwey, E., Briffa, A., Howard, M., & Zilberman, D. (2023). Concepts,
mechanisms and implications of long-term epigenetic inheritance. Current Opinion
in Genetics and Development. Elsevier. https://doi.org/10.1016/j.gde.2023.102087
chicago: Hollwey, Elizabeth, Amy Briffa, Martin Howard, and Daniel Zilberman. “Concepts,
Mechanisms and Implications of Long-Term Epigenetic Inheritance.” Current Opinion
in Genetics and Development. Elsevier, 2023. https://doi.org/10.1016/j.gde.2023.102087.
ieee: E. Hollwey, A. Briffa, M. Howard, and D. Zilberman, “Concepts, mechanisms
and implications of long-term epigenetic inheritance,” Current Opinion in Genetics
and Development, vol. 81, no. 8. Elsevier, 2023.
ista: Hollwey E, Briffa A, Howard M, Zilberman D. 2023. Concepts, mechanisms and
implications of long-term epigenetic inheritance. Current Opinion in Genetics
and Development. 81(8), 102087.
mla: Hollwey, Elizabeth, et al. “Concepts, Mechanisms and Implications of Long-Term
Epigenetic Inheritance.” Current Opinion in Genetics and Development, vol.
81, no. 8, 102087, Elsevier, 2023, doi:10.1016/j.gde.2023.102087.
short: E. Hollwey, A. Briffa, M. Howard, D. Zilberman, Current Opinion in Genetics
and Development 81 (2023).
date_created: 2023-08-06T22:01:10Z
date_published: 2023-08-01T00:00:00Z
date_updated: 2023-12-13T12:05:31Z
day: '01'
ddc:
- '570'
department:
- _id: DaZi
doi: 10.1016/j.gde.2023.102087
external_id:
isi:
- '001047020200001'
pmid:
- '37441873'
file:
- access_level: open_access
checksum: a294cd9506b80ed6ef218ef44ed32765
content_type: application/pdf
creator: dernst
date_created: 2023-08-07T08:32:26Z
date_updated: 2023-08-07T08:32:26Z
file_id: '13980'
file_name: 2023_CurrentOpinionGenetics_Hollwey.pdf
file_size: 2568632
relation: main_file
success: 1
file_date_updated: 2023-08-07T08:32:26Z
has_accepted_license: '1'
intvolume: ' 81'
isi: 1
issue: '8'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Current Opinion in Genetics and Development
publication_identifier:
eissn:
- 1879-0380
issn:
- 0959-437X
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Concepts, mechanisms and implications of long-term epigenetic inheritance
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 81
year: '2023'
...
---
_id: '13966'
abstract:
- lang: eng
text: We present a low-scaling diagrammatic Monte Carlo approach to molecular correlation
energies. Using combinatorial graph theory to encode many-body Hugenholtz diagrams,
we sample the Møller-Plesset (MPn) perturbation series, obtaining accurate correlation
energies up to n=5, with quadratic scaling in the number of basis functions. Our
technique reduces the computational complexity of the molecular many-fermion correlation
problem, opening up the possibility of low-scaling, accurate stochastic computations
for a wide class of many-body systems described by Hugenholtz diagrams.
acknowledgement: We acknowledge stimulating discussions with Sergey Varganov, Artur
Izmaylov, Jacek Kłos, Piotr Żuchowski, Dominika Zgid, Nikolay Prokof'ev, Boris Svistunov,
Robert Parrish, and Andreas Heßelmann. G.B. and Q.P.H. acknowledge support from
the Austrian Science Fund (FWF) under Projects No. M2641-N27 and No. M2751. M.L.
acknowledges support by the FWF under Project No. P29902-N27, and by the European
Research Council (ERC) Starting Grant No. 801770 (ANGULON). T.V.T. was supported
by the NSF CAREER award No. PHY-2045681. This work is supported by the German Research
Foundation (DFG) under Germany's Excellence Strategy EXC2181/1-390900948 (the Heidelberg
STRUCTURES Excellence Cluster). The authors acknowledge support by the state of
Baden-Württemberg through bwHPC.
article_number: '045115'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Giacomo
full_name: Bighin, Giacomo
id: 4CA96FD4-F248-11E8-B48F-1D18A9856A87
last_name: Bighin
orcid: 0000-0001-8823-9777
- first_name: Quoc P
full_name: Ho, Quoc P
id: 3DD82E3C-F248-11E8-B48F-1D18A9856A87
last_name: Ho
orcid: 0000-0001-6889-1418
- first_name: Mikhail
full_name: Lemeshko, Mikhail
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
- first_name: T. V.
full_name: Tscherbul, T. V.
last_name: Tscherbul
citation:
ama: 'Bighin G, Ho QP, Lemeshko M, Tscherbul TV. Diagrammatic Monte Carlo for electronic
correlation in molecules: High-order many-body perturbation theory with low scaling.
Physical Review B. 2023;108(4). doi:10.1103/PhysRevB.108.045115'
apa: 'Bighin, G., Ho, Q. P., Lemeshko, M., & Tscherbul, T. V. (2023). Diagrammatic
Monte Carlo for electronic correlation in molecules: High-order many-body perturbation
theory with low scaling. Physical Review B. American Physical Society.
https://doi.org/10.1103/PhysRevB.108.045115'
chicago: 'Bighin, Giacomo, Quoc P Ho, Mikhail Lemeshko, and T. V. Tscherbul. “Diagrammatic
Monte Carlo for Electronic Correlation in Molecules: High-Order Many-Body Perturbation
Theory with Low Scaling.” Physical Review B. American Physical Society,
2023. https://doi.org/10.1103/PhysRevB.108.045115.'
ieee: 'G. Bighin, Q. P. Ho, M. Lemeshko, and T. V. Tscherbul, “Diagrammatic Monte
Carlo for electronic correlation in molecules: High-order many-body perturbation
theory with low scaling,” Physical Review B, vol. 108, no. 4. American
Physical Society, 2023.'
ista: 'Bighin G, Ho QP, Lemeshko M, Tscherbul TV. 2023. Diagrammatic Monte Carlo
for electronic correlation in molecules: High-order many-body perturbation theory
with low scaling. Physical Review B. 108(4), 045115.'
mla: 'Bighin, Giacomo, et al. “Diagrammatic Monte Carlo for Electronic Correlation
in Molecules: High-Order Many-Body Perturbation Theory with Low Scaling.” Physical
Review B, vol. 108, no. 4, 045115, American Physical Society, 2023, doi:10.1103/PhysRevB.108.045115.'
short: G. Bighin, Q.P. Ho, M. Lemeshko, T.V. Tscherbul, Physical Review B 108 (2023).
date_created: 2023-08-06T22:01:10Z
date_published: 2023-07-15T00:00:00Z
date_updated: 2024-08-07T07:16:52Z
day: '15'
department:
- _id: MiLe
- _id: TaHa
doi: 10.1103/PhysRevB.108.045115
ec_funded: 1
external_id:
arxiv:
- '2203.12666'
intvolume: ' 108'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2203.12666
month: '07'
oa: 1
oa_version: Preprint
project:
- _id: 26986C82-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: M02641
name: A path-integral approach to composite impurities
- _id: 26B96266-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: M02751
name: Algebro-Geometric Applications of Factorization Homology
- _id: 26031614-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P29902
name: Quantum rotations in the presence of a many-body environment
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '801770'
name: 'Angulon: physics and applications of a new quasiparticle'
publication: Physical Review B
publication_identifier:
eissn:
- 2469-9969
issn:
- 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Diagrammatic Monte Carlo for electronic correlation in molecules: High-order
many-body perturbation theory with low scaling'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 108
year: '2023'
...
---
_id: '13967'
abstract:
- lang: eng
text: 'A classic solution technique for Markov decision processes (MDP) and stochastic
games (SG) is value iteration (VI). Due to its good practical performance, this
approximative approach is typically preferred over exact techniques, even though
no practical bounds on the imprecision of the result could be given until recently.
As a consequence, even the most used model checkers could return arbitrarily wrong
results. Over the past decade, different works derived stopping criteria, indicating
when the precision reaches the desired level, for various settings, in particular
MDP with reachability, total reward, and mean payoff, and SG with reachability.In
this paper, we provide the first stopping criteria for VI on SG with total reward
and mean payoff, yielding the first anytime algorithms in these settings. To this
end, we provide the solution in two flavours: First through a reduction to the
MDP case and second directly on SG. The former is simpler and automatically utilizes
any advances on MDP. The latter allows for more local computations, heading towards
better practical efficiency.Our solution unifies the previously mentioned approaches
for MDP and SG and their underlying ideas. To achieve this, we isolate objective-specific
subroutines as well as identify objective-independent concepts. These structural
concepts, while surprisingly simple, form the very essence of the unified solution.'
acknowledgement: This research was funded in part by DFG projects 383882557 “SUV”
and 427755713 “GOPro”.
article_processing_charge: No
arxiv: 1
author:
- first_name: Jan
full_name: Kretinsky, Jan
id: 44CEF464-F248-11E8-B48F-1D18A9856A87
last_name: Kretinsky
orcid: 0000-0002-8122-2881
- first_name: Tobias
full_name: Meggendorfer, Tobias
id: b21b0c15-30a2-11eb-80dc-f13ca25802e1
last_name: Meggendorfer
orcid: 0000-0002-1712-2165
- first_name: Maximilian
full_name: Weininger, Maximilian
id: 02ab0197-cc70-11ed-ab61-918e71f56881
last_name: Weininger
citation:
ama: 'Kretinsky J, Meggendorfer T, Weininger M. Stopping criteria for value iteration
on stochastic games with quantitative objectives. In: 38th Annual ACM/IEEE
Symposium on Logic in Computer Science. Vol 2023. Institute of Electrical
and Electronics Engineers; 2023. doi:10.1109/LICS56636.2023.10175771'
apa: 'Kretinsky, J., Meggendorfer, T., & Weininger, M. (2023). Stopping criteria
for value iteration on stochastic games with quantitative objectives. In 38th
Annual ACM/IEEE Symposium on Logic in Computer Science (Vol. 2023). Boston,
MA, United States: Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/LICS56636.2023.10175771'
chicago: Kretinsky, Jan, Tobias Meggendorfer, and Maximilian Weininger. “Stopping
Criteria for Value Iteration on Stochastic Games with Quantitative Objectives.”
In 38th Annual ACM/IEEE Symposium on Logic in Computer Science, Vol. 2023.
Institute of Electrical and Electronics Engineers, 2023. https://doi.org/10.1109/LICS56636.2023.10175771.
ieee: J. Kretinsky, T. Meggendorfer, and M. Weininger, “Stopping criteria for value
iteration on stochastic games with quantitative objectives,” in 38th Annual
ACM/IEEE Symposium on Logic in Computer Science, Boston, MA, United States,
2023, vol. 2023.
ista: 'Kretinsky J, Meggendorfer T, Weininger M. 2023. Stopping criteria for value
iteration on stochastic games with quantitative objectives. 38th Annual ACM/IEEE
Symposium on Logic in Computer Science. LICS: Symposium on Logic in Computer Science
vol. 2023.'
mla: Kretinsky, Jan, et al. “Stopping Criteria for Value Iteration on Stochastic
Games with Quantitative Objectives.” 38th Annual ACM/IEEE Symposium on Logic
in Computer Science, vol. 2023, Institute of Electrical and Electronics Engineers,
2023, doi:10.1109/LICS56636.2023.10175771.
short: J. Kretinsky, T. Meggendorfer, M. Weininger, in:, 38th Annual ACM/IEEE Symposium
on Logic in Computer Science, Institute of Electrical and Electronics Engineers,
2023.
conference:
end_date: 2023-06-29
location: Boston, MA, United States
name: 'LICS: Symposium on Logic in Computer Science'
start_date: 2023-06-26
date_created: 2023-08-06T22:01:10Z
date_published: 2023-07-01T00:00:00Z
date_updated: 2023-12-13T12:06:10Z
day: '01'
department:
- _id: KrCh
doi: 10.1109/LICS56636.2023.10175771
external_id:
arxiv:
- '2304.09930'
isi:
- '001036707700042'
intvolume: ' 2023'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2304.09930
month: '07'
oa: 1
oa_version: Preprint
publication: 38th Annual ACM/IEEE Symposium on Logic in Computer Science
publication_identifier:
isbn:
- '9798350335873'
issn:
- 1043-6871
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Stopping criteria for value iteration on stochastic games with quantitative
objectives
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2023
year: '2023'
...
---
_id: '13968'
abstract:
- lang: eng
text: The use of multimodal readout mechanisms next to label-free real-time monitoring
of biomolecular interactions can provide valuable insight into surface-based reaction
mechanisms. To this end, the combination of an electrolyte-gated field-effect
transistor (EG-FET) with a fiber optic-coupled surface plasmon resonance (FO-SPR)
probe serving as gate electrode has been investigated to deconvolute surface mass
and charge density variations associated to surface reactions. However, applying
an electrochemical potential on such gold-coated FO-SPR gate electrodes can induce
gradual morphological changes of the thin gold film, leading to an irreversible
blue-shift of the SPR wavelength and a substantial signal drift. We show that
mild annealing leads to optical and electronic signal stabilization (20-fold lower
signal drift than as-sputtered fiber optic gates) and improved overall analytical
performance characteristics. The thermal treatment prevents morphological changes
of the thin gold-film occurring during operation, hence providing reliable and
stable data immediately upon gate voltage application. Thus, the readout output
of both transducing principles, the optical FO-SPR and electronic EG-FET, stays
constant throughout the whole sensing time-window and the long-term effect of
thermal treatment is also improved, providing stable signals even after 1 year
of storage. Annealing should therefore be considered a necessary modification
for applying fiber optic gate electrodes in real-time multimodal investigations
of surface reactions at the solid-liquid interface.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: "This project has received funding from the European Union’s Horizon
2020 Research and Innovation Programme under the Marie Skłodowska-Curie grant agreement
No. 813863–BORGES. We further thank the office of the Federal Government of Lower
Austria, K3-Group–Culture, Science and Education, for their financial support as
part of the project “Responsive Wound Dressing”. We gratefully acknowledge the financial
support from the Austrian Research Promotion Agency (FFG; 888067).\r\nWe thank the
Electron Microscopy Facility at IST Austria for their support with sputter coating
the FO tips and Bernhard Pichler from AIT for software development to facilitate
data evaluation."
article_number: '1202132'
article_processing_charge: Yes
article_type: original
author:
- first_name: Roger
full_name: Hasler, Roger
last_name: Hasler
- first_name: Marie Helene
full_name: Steger-Polt, Marie Helene
last_name: Steger-Polt
- first_name: Ciril
full_name: Reiner-Rozman, Ciril
last_name: Reiner-Rozman
- first_name: Stefan
full_name: Fossati, Stefan
last_name: Fossati
- first_name: Seungho
full_name: Lee, Seungho
id: BB243B88-D767-11E9-B658-BC13E6697425
last_name: Lee
orcid: 0000-0002-6962-8598
- first_name: Patrik
full_name: Aspermair, Patrik
last_name: Aspermair
- first_name: Christoph
full_name: Kleber, Christoph
last_name: Kleber
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Jakub
full_name: Dostalek, Jakub
last_name: Dostalek
- first_name: Wolfgang
full_name: Knoll, Wolfgang
last_name: Knoll
citation:
ama: 'Hasler R, Steger-Polt MH, Reiner-Rozman C, et al. Optical and electronic signal
stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time
dual-mode biosensing. Frontiers in Physics. 2023;11. doi:10.3389/fphy.2023.1202132'
apa: 'Hasler, R., Steger-Polt, M. H., Reiner-Rozman, C., Fossati, S., Lee, S., Aspermair,
P., … Knoll, W. (2023). Optical and electronic signal stabilization of plasmonic
fiber optic gate electrodes: Towards improved real-time dual-mode biosensing.
Frontiers in Physics. Frontiers. https://doi.org/10.3389/fphy.2023.1202132'
chicago: 'Hasler, Roger, Marie Helene Steger-Polt, Ciril Reiner-Rozman, Stefan Fossati,
Seungho Lee, Patrik Aspermair, Christoph Kleber, Maria Ibáñez, Jakub Dostalek,
and Wolfgang Knoll. “Optical and Electronic Signal Stabilization of Plasmonic
Fiber Optic Gate Electrodes: Towards Improved Real-Time Dual-Mode Biosensing.”
Frontiers in Physics. Frontiers, 2023. https://doi.org/10.3389/fphy.2023.1202132.'
ieee: 'R. Hasler et al., “Optical and electronic signal stabilization of
plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing,”
Frontiers in Physics, vol. 11. Frontiers, 2023.'
ista: 'Hasler R, Steger-Polt MH, Reiner-Rozman C, Fossati S, Lee S, Aspermair P,
Kleber C, Ibáñez M, Dostalek J, Knoll W. 2023. Optical and electronic signal stabilization
of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode
biosensing. Frontiers in Physics. 11, 1202132.'
mla: 'Hasler, Roger, et al. “Optical and Electronic Signal Stabilization of Plasmonic
Fiber Optic Gate Electrodes: Towards Improved Real-Time Dual-Mode Biosensing.”
Frontiers in Physics, vol. 11, 1202132, Frontiers, 2023, doi:10.3389/fphy.2023.1202132.'
short: R. Hasler, M.H. Steger-Polt, C. Reiner-Rozman, S. Fossati, S. Lee, P. Aspermair,
C. Kleber, M. Ibáñez, J. Dostalek, W. Knoll, Frontiers in Physics 11 (2023).
date_created: 2023-08-06T22:01:11Z
date_published: 2023-07-14T00:00:00Z
date_updated: 2023-12-13T12:04:10Z
day: '14'
ddc:
- '530'
department:
- _id: MaIb
doi: 10.3389/fphy.2023.1202132
external_id:
isi:
- '001038636400001'
file:
- access_level: open_access
checksum: fb36dda665e57bab006a000bf0faacd5
content_type: application/pdf
creator: dernst
date_created: 2023-08-07T07:48:11Z
date_updated: 2023-08-07T07:48:11Z
file_id: '13978'
file_name: 2023_FrontiersPhysics_Hasler.pdf
file_size: 2421758
relation: main_file
success: 1
file_date_updated: 2023-08-07T07:48:11Z
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Frontiers in Physics
publication_identifier:
eissn:
- 2296-424X
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Optical and electronic signal stabilization of plasmonic fiber optic gate
electrodes: Towards improved real-time dual-mode biosensing'
tmp:
image: /images/cc_by.png
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type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2023'
...
---
_id: '13969'
abstract:
- lang: eng
text: "Bundling crossings is a strategy which can enhance the readability\r\nof
graph drawings. In this paper we consider good drawings, i.e., we require that\r\nany
two edges have at most one common point which can be a common vertex or a\r\ncrossing.
Our main result is that there is a polynomial-time algorithm to compute an\r\n8-approximation
of the bundled crossing number of a good drawing with no toothed\r\nhole. In general
the number of toothed holes has to be added to the 8-approximation.\r\nIn the
special case of circular drawings the approximation factor is 8, this improves\r\nupon
the 10-approximation of Fink et al. [14]. Our approach also works with the same\r\napproximation
factor for families of pseudosegments, i.e., curves intersecting at most\r\nonce.
We also show how to compute a 9/2-approximation when the intersection graph of\r\nthe
pseudosegments is bipartite and has no toothed hole."
acknowledgement: This work was initiated during the Workshop on Geometric Graphs in
November 2019 in Strobl, Austria. We would like to thank Oswin Aichholzer, Fabian
Klute, Man-Kwun Chiu, Martin Balko, Pavel Valtr for their avid discussions during
the workshop. The first author has received funding from the European Union’s Horizon
2020 research and innovation programme under the Marie Sk lodowska-Curie grant agreement
No 754411. The second author has been supported by the German Research Foundation
DFG Project FE 340/12-1. An extended abstract of this paper has been published in
the proceedings of WALCOM 2022 in the Springer LNCS series, vol. 13174, pages 383–395.
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Alan M
full_name: Arroyo Guevara, Alan M
id: 3207FDC6-F248-11E8-B48F-1D18A9856A87
last_name: Arroyo Guevara
orcid: 0000-0003-2401-8670
- first_name: Stefan
full_name: Felsner, Stefan
last_name: Felsner
citation:
ama: Arroyo Guevara AM, Felsner S. Approximating the bundled crossing number. Journal
of Graph Algorithms and Applications. 2023;27(6):433-457. doi:10.7155/jgaa.00629
apa: Arroyo Guevara, A. M., & Felsner, S. (2023). Approximating the bundled
crossing number. Journal of Graph Algorithms and Applications. Brown University.
https://doi.org/10.7155/jgaa.00629
chicago: Arroyo Guevara, Alan M, and Stefan Felsner. “Approximating the Bundled
Crossing Number.” Journal of Graph Algorithms and Applications. Brown University,
2023. https://doi.org/10.7155/jgaa.00629.
ieee: A. M. Arroyo Guevara and S. Felsner, “Approximating the bundled crossing number,”
Journal of Graph Algorithms and Applications, vol. 27, no. 6. Brown University,
pp. 433–457, 2023.
ista: Arroyo Guevara AM, Felsner S. 2023. Approximating the bundled crossing number.
Journal of Graph Algorithms and Applications. 27(6), 433–457.
mla: Arroyo Guevara, Alan M., and Stefan Felsner. “Approximating the Bundled Crossing
Number.” Journal of Graph Algorithms and Applications, vol. 27, no. 6,
Brown University, 2023, pp. 433–57, doi:10.7155/jgaa.00629.
short: A.M. Arroyo Guevara, S. Felsner, Journal of Graph Algorithms and Applications
27 (2023) 433–457.
date_created: 2023-08-06T22:01:11Z
date_published: 2023-07-01T00:00:00Z
date_updated: 2023-09-25T10:56:10Z
day: '01'
ddc:
- '510'
department:
- _id: UlWa
doi: 10.7155/jgaa.00629
ec_funded: 1
external_id:
arxiv:
- '2109.14892'
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creator: dernst
date_created: 2023-08-07T08:00:48Z
date_updated: 2023-08-07T08:00:48Z
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file_name: 2023_JourGraphAlgorithms_Arroyo.pdf
file_size: 865774
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month: '07'
oa: 1
oa_version: Published Version
page: 433-457
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Journal of Graph Algorithms and Applications
publication_identifier:
issn:
- 1526-1719
publication_status: published
publisher: Brown University
quality_controlled: '1'
related_material:
record:
- id: '11185'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: Approximating the bundled crossing number
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 27
year: '2023'
...
---
_id: '13970'
article_processing_charge: No
article_type: original
author:
- first_name: Amiera
full_name: Madani, Amiera
last_name: Madani
- first_name: Eric T.
full_name: Sletten, Eric T.
last_name: Sletten
- first_name: Cristian
full_name: Cavedon, Cristian
last_name: Cavedon
- first_name: Peter H.
full_name: Seeberger, Peter H.
last_name: Seeberger
- first_name: Bartholomäus
full_name: Pieber, Bartholomäus
id: 93e5e5b2-0da6-11ed-8a41-af589a024726
last_name: Pieber
orcid: 0000-0001-8689-388X
citation:
ama: Madani A, Sletten ET, Cavedon C, Seeberger PH, Pieber B. Visible-light-mediated
oxidative debenzylation of 3-O-Benzyl-1,2:5,6-di-O-isopropylidene-α-D-glucofuranose.
Organic Syntheses. 2023;100:271-286. doi:10.15227/orgsyn.100.0271
apa: Madani, A., Sletten, E. T., Cavedon, C., Seeberger, P. H., & Pieber, B.
(2023). Visible-light-mediated oxidative debenzylation of 3-O-Benzyl-1,2:5,6-di-O-isopropylidene-α-D-glucofuranose.
Organic Syntheses. Organic Syntheses. https://doi.org/10.15227/orgsyn.100.0271
chicago: Madani, Amiera, Eric T. Sletten, Cristian Cavedon, Peter H. Seeberger,
and Bartholomäus Pieber. “Visible-Light-Mediated Oxidative Debenzylation of 3-O-Benzyl-1,2:5,6-Di-O-Isopropylidene-α-D-Glucofuranose.”
Organic Syntheses. Organic Syntheses, 2023. https://doi.org/10.15227/orgsyn.100.0271.
ieee: A. Madani, E. T. Sletten, C. Cavedon, P. H. Seeberger, and B. Pieber, “Visible-light-mediated
oxidative debenzylation of 3-O-Benzyl-1,2:5,6-di-O-isopropylidene-α-D-glucofuranose,”
Organic Syntheses, vol. 100. Organic Syntheses, pp. 271–286, 2023.
ista: Madani A, Sletten ET, Cavedon C, Seeberger PH, Pieber B. 2023. Visible-light-mediated
oxidative debenzylation of 3-O-Benzyl-1,2:5,6-di-O-isopropylidene-α-D-glucofuranose.
Organic Syntheses. 100, 271–286.
mla: Madani, Amiera, et al. “Visible-Light-Mediated Oxidative Debenzylation of 3-O-Benzyl-1,2:5,6-Di-O-Isopropylidene-α-D-Glucofuranose.”
Organic Syntheses, vol. 100, Organic Syntheses, 2023, pp. 271–86, doi:10.15227/orgsyn.100.0271.
short: A. Madani, E.T. Sletten, C. Cavedon, P.H. Seeberger, B. Pieber, Organic Syntheses
100 (2023) 271–286.
date_created: 2023-08-06T22:01:11Z
date_published: 2023-07-01T00:00:00Z
date_updated: 2023-08-07T08:21:45Z
day: '01'
department:
- _id: BaPi
doi: 10.15227/orgsyn.100.0271
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language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.15227/orgsyn.100.0271
month: '07'
oa: 1
oa_version: Published Version
page: 271-286
publication: Organic Syntheses
publication_identifier:
eissn:
- 2333-3553
issn:
- 0078-6209
publication_status: published
publisher: Organic Syntheses
quality_controlled: '1'
scopus_import: '1'
status: public
title: Visible-light-mediated oxidative debenzylation of 3-O-Benzyl-1,2:5,6-di-O-isopropylidene-α-D-glucofuranose
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 100
year: '2023'
...