---
_id: '7593'
abstract:
- lang: eng
text: Heterozygous loss of human PAFAH1B1 (coding for LIS1) results in the disruption
of neurogenesis and neuronal migration via dysregulation of microtubule (MT) stability
and dynein motor function/localization that alters mitotic spindle orientation,
chromosomal segregation, and nuclear migration. Recently, human induced pluripotent
stem cell (iPSC) models revealed an important role for LIS1 in controlling the
length of terminal cell divisions of outer radial glial (oRG) progenitors, suggesting
cellular functions of LIS1 in regulating neural progenitor cell (NPC) daughter
cell separation. Here we examined the late mitotic stages NPCs in vivo and mouse
embryonic fibroblasts (MEFs) in vitro from Pafah1b1-deficient mutants. Pafah1b1-deficient
neocortical NPCs and MEFs similarly exhibited cleavage plane displacement with
mislocalization of furrow-associated markers, associated with actomyosin dysfunction
and cell membrane hyper-contractility. Thus, it suggests LIS1 acts as a key molecular
link connecting MTs/dynein and actomyosin, ensuring that cell membrane contractility
is tightly controlled to execute proper daughter cell separation.
article_number: '51512'
article_processing_charge: No
article_type: original
author:
- first_name: Hyang Mi
full_name: Moon, Hyang Mi
last_name: Moon
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
- first_name: Liqun
full_name: Luo, Liqun
last_name: Luo
- first_name: Anthony
full_name: Wynshaw-Boris, Anthony
last_name: Wynshaw-Boris
citation:
ama: Moon HM, Hippenmeyer S, Luo L, Wynshaw-Boris A. LIS1 determines cleavage plane
positioning by regulating actomyosin-mediated cell membrane contractility. eLife.
2020;9. doi:10.7554/elife.51512
apa: Moon, H. M., Hippenmeyer, S., Luo, L., & Wynshaw-Boris, A. (2020). LIS1
determines cleavage plane positioning by regulating actomyosin-mediated cell membrane
contractility. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.51512
chicago: Moon, Hyang Mi, Simon Hippenmeyer, Liqun Luo, and Anthony Wynshaw-Boris.
“LIS1 Determines Cleavage Plane Positioning by Regulating Actomyosin-Mediated
Cell Membrane Contractility.” ELife. eLife Sciences Publications, 2020.
https://doi.org/10.7554/elife.51512.
ieee: H. M. Moon, S. Hippenmeyer, L. Luo, and A. Wynshaw-Boris, “LIS1 determines
cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility,”
eLife, vol. 9. eLife Sciences Publications, 2020.
ista: Moon HM, Hippenmeyer S, Luo L, Wynshaw-Boris A. 2020. LIS1 determines cleavage
plane positioning by regulating actomyosin-mediated cell membrane contractility.
eLife. 9, 51512.
mla: Moon, Hyang Mi, et al. “LIS1 Determines Cleavage Plane Positioning by Regulating
Actomyosin-Mediated Cell Membrane Contractility.” ELife, vol. 9, 51512,
eLife Sciences Publications, 2020, doi:10.7554/elife.51512.
short: H.M. Moon, S. Hippenmeyer, L. Luo, A. Wynshaw-Boris, ELife 9 (2020).
date_created: 2020-03-20T13:16:41Z
date_published: 2020-03-11T00:00:00Z
date_updated: 2023-08-18T07:06:31Z
day: '11'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.7554/elife.51512
external_id:
isi:
- '000522835800001'
pmid:
- '32159512'
file:
- access_level: open_access
checksum: 396ceb2dd10b102ef4e699666b9342c3
content_type: application/pdf
creator: dernst
date_created: 2020-09-24T07:03:20Z
date_updated: 2020-09-24T07:03:20Z
file_id: '8567'
file_name: 2020_elife_Moon.pdf
file_size: 15089438
relation: main_file
success: 1
file_date_updated: 2020-09-24T07:03:20Z
has_accepted_license: '1'
intvolume: ' 9'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1101/751958
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
issn:
- 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: LIS1 determines cleavage plane positioning by regulating actomyosin-mediated
cell membrane contractility
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2020'
...
---
_id: '7594'
abstract:
- lang: eng
text: The concept of the entanglement between spin and orbital degrees of freedom
plays a crucial role in our understanding of various phases and exotic ground
states in a broad class of materials, including orbitally ordered materials and
spin liquids. We investigate how the spin-orbital entanglement in a Mott insulator
depends on the value of the spin-orbit coupling of the relativistic origin. To
this end, we numerically diagonalize a one-dimensional spin-orbital model with
Kugel-Khomskii exchange interactions between spins and orbitals on different sites
supplemented by the on-site spin-orbit coupling. In the regime of small spin-orbit
coupling with regard to the spin-orbital exchange, the ground state to a large
extent resembles the one obtained in the limit of vanishing spin-orbit coupling.
On the other hand, for large spin-orbit coupling the ground state can, depending
on the model parameters, either still show negligible spin-orbital entanglement
or evolve to a highly spin-orbitally-entangled phase with completely distinct
properties that are described by an effective XXZ model. The presented results
suggest that (i) the spin-orbital entanglement may be induced by large on-site
spin-orbit coupling, as found in the 5d transition metal oxides, such as the iridates;
(ii) for Mott insulators with weak spin-orbit coupling of Ising type, such as,
e.g., the alkali hyperoxides, the effects of the spin-orbit coupling on the ground
state can, in the first order of perturbation theory, be neglected.
article_number: '013353'
article_processing_charge: No
article_type: original
author:
- first_name: Dorota
full_name: Gotfryd, Dorota
last_name: Gotfryd
- first_name: Ekaterina
full_name: Paerschke, Ekaterina
id: 8275014E-6063-11E9-9B7F-6338E6697425
last_name: Paerschke
orcid: 0000-0003-0853-8182
- first_name: Jiri
full_name: Chaloupka, Jiri
last_name: Chaloupka
- first_name: Andrzej M.
full_name: Oles, Andrzej M.
last_name: Oles
- first_name: Krzysztof
full_name: Wohlfeld, Krzysztof
last_name: Wohlfeld
citation:
ama: Gotfryd D, Paerschke E, Chaloupka J, Oles AM, Wohlfeld K. How spin-orbital
entanglement depends on the spin-orbit coupling in a Mott insulator. Physical
Review Research. 2020;2(1). doi:10.1103/PhysRevResearch.2.013353
apa: Gotfryd, D., Paerschke, E., Chaloupka, J., Oles, A. M., & Wohlfeld, K.
(2020). How spin-orbital entanglement depends on the spin-orbit coupling in a
Mott insulator. Physical Review Research. American Physical Society. https://doi.org/10.1103/PhysRevResearch.2.013353
chicago: Gotfryd, Dorota, Ekaterina Paerschke, Jiri Chaloupka, Andrzej M. Oles,
and Krzysztof Wohlfeld. “How Spin-Orbital Entanglement Depends on the Spin-Orbit
Coupling in a Mott Insulator.” Physical Review Research. American Physical
Society, 2020. https://doi.org/10.1103/PhysRevResearch.2.013353.
ieee: D. Gotfryd, E. Paerschke, J. Chaloupka, A. M. Oles, and K. Wohlfeld, “How
spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator,”
Physical Review Research, vol. 2, no. 1. American Physical Society, 2020.
ista: Gotfryd D, Paerschke E, Chaloupka J, Oles AM, Wohlfeld K. 2020. How spin-orbital
entanglement depends on the spin-orbit coupling in a Mott insulator. Physical
Review Research. 2(1), 013353.
mla: Gotfryd, Dorota, et al. “How Spin-Orbital Entanglement Depends on the Spin-Orbit
Coupling in a Mott Insulator.” Physical Review Research, vol. 2, no. 1,
013353, American Physical Society, 2020, doi:10.1103/PhysRevResearch.2.013353.
short: D. Gotfryd, E. Paerschke, J. Chaloupka, A.M. Oles, K. Wohlfeld, Physical
Review Research 2 (2020).
date_created: 2020-03-20T15:21:10Z
date_published: 2020-03-20T00:00:00Z
date_updated: 2021-01-12T08:14:23Z
day: '20'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1103/PhysRevResearch.2.013353
ec_funded: 1
file:
- access_level: open_access
checksum: 1be551fd5f5583635076017d7391ffdc
content_type: application/pdf
creator: dernst
date_created: 2020-03-23T10:18:38Z
date_updated: 2020-07-14T12:48:00Z
file_id: '7610'
file_name: 2020_PhysRevResearch_Gotfryd.pdf
file_size: 1436735
relation: main_file
file_date_updated: 2020-07-14T12:48:00Z
has_accepted_license: '1'
intvolume: ' 2'
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Physical Review Research
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: How spin-orbital entanglement depends on the spin-orbit coupling in a Mott
insulator
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2020'
...
---
_id: '7600'
abstract:
- lang: eng
text: Directional intercellular transport of the phytohormone auxin mediated by
PIN FORMED (PIN) efflux carriers plays essential roles in both coordinating patterning
processes and integrating multiple external cues by rapidly redirecting auxin
fluxes. Multilevel regulations of PIN activity under internal and external cues
are complicated; however, the underlying molecular mechanism remains elusive.
Here we demonstrate that 3’-Phosphoinositide-Dependent Protein Kinase1 (PDK1),
which is conserved in plants and mammals, functions as a molecular hub integrating
the upstream lipid signalling and the downstream substrate activity through phosphorylation.
Genetic analysis uncovers that loss-of-function Arabidopsis mutant pdk1.1 pdk1.2
exhibits a plethora of abnormalities in organogenesis and growth, due to the defective
PIN-dependent auxin transport. Further cellular and biochemical analyses reveal
that PDK1 phosphorylates D6 Protein Kinase to facilitate its activity towards
PIN proteins. Our studies establish a lipid-dependent phosphorylation cascade
connecting membrane composition-based cellular signalling with plant growth and
patterning by regulating morphogenetic auxin fluxes.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
article_processing_charge: No
article_type: original
author:
- first_name: Shutang
full_name: Tan, Shutang
id: 2DE75584-F248-11E8-B48F-1D18A9856A87
last_name: Tan
orcid: 0000-0002-0471-8285
- first_name: Xixi
full_name: Zhang, Xixi
id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
last_name: Zhang
orcid: 0000-0001-7048-4627
- first_name: Wei
full_name: Kong, Wei
last_name: Kong
- first_name: Xiao-Li
full_name: Yang, Xiao-Li
last_name: Yang
- first_name: Gergely
full_name: Molnar, Gergely
id: 34F1AF46-F248-11E8-B48F-1D18A9856A87
last_name: Molnar
- first_name: Zuzana
full_name: Vondráková, Zuzana
last_name: Vondráková
- first_name: Roberta
full_name: Filepová, Roberta
last_name: Filepová
- first_name: Jan
full_name: Petrášek, Jan
last_name: Petrášek
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Hong-Wei
full_name: Xue, Hong-Wei
last_name: Xue
citation:
ama: Tan S, Zhang X, Kong W, et al. The lipid code-dependent phosphoswitch PDK1–D6PK
activates PIN-mediated auxin efflux in Arabidopsis. Nature Plants. 2020;6:556-569.
doi:10.1038/s41477-020-0648-9
apa: Tan, S., Zhang, X., Kong, W., Yang, X.-L., Molnar, G., Vondráková, Z., … Xue,
H.-W. (2020). The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated
auxin efflux in Arabidopsis. Nature Plants. Springer Nature. https://doi.org/10.1038/s41477-020-0648-9
chicago: Tan, Shutang, Xixi Zhang, Wei Kong, Xiao-Li Yang, Gergely Molnar, Zuzana
Vondráková, Roberta Filepová, Jan Petrášek, Jiří Friml, and Hong-Wei Xue. “The
Lipid Code-Dependent Phosphoswitch PDK1–D6PK Activates PIN-Mediated Auxin Efflux
in Arabidopsis.” Nature Plants. Springer Nature, 2020. https://doi.org/10.1038/s41477-020-0648-9.
ieee: S. Tan et al., “The lipid code-dependent phosphoswitch PDK1–D6PK activates
PIN-mediated auxin efflux in Arabidopsis,” Nature Plants, vol. 6. Springer
Nature, pp. 556–569, 2020.
ista: Tan S, Zhang X, Kong W, Yang X-L, Molnar G, Vondráková Z, Filepová R, Petrášek
J, Friml J, Xue H-W. 2020. The lipid code-dependent phosphoswitch PDK1–D6PK activates
PIN-mediated auxin efflux in Arabidopsis. Nature Plants. 6, 556–569.
mla: Tan, Shutang, et al. “The Lipid Code-Dependent Phosphoswitch PDK1–D6PK Activates
PIN-Mediated Auxin Efflux in Arabidopsis.” Nature Plants, vol. 6, Springer
Nature, 2020, pp. 556–69, doi:10.1038/s41477-020-0648-9.
short: S. Tan, X. Zhang, W. Kong, X.-L. Yang, G. Molnar, Z. Vondráková, R. Filepová,
J. Petrášek, J. Friml, H.-W. Xue, Nature Plants 6 (2020) 556–569.
date_created: 2020-03-21T16:34:16Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2023-08-18T07:05:57Z
day: '01'
department:
- _id: JiFr
doi: 10.1038/s41477-020-0648-9
ec_funded: 1
external_id:
isi:
- '000531787500006'
pmid:
- '32393881'
intvolume: ' 6'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1101/755504
month: '05'
oa: 1
oa_version: Preprint
page: 556-569
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 256FEF10-B435-11E9-9278-68D0E5697425
grant_number: 723-2015
name: Long Term Fellowship
publication: Nature Plants
publication_identifier:
eissn:
- '20550278'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- relation: erratum
url: https://doi.org/10.1038/s41477-020-0719-y
scopus_import: '1'
status: public
title: The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin
efflux in Arabidopsis
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 6
year: '2020'
...
---
_id: '7601'
abstract:
- lang: eng
text: Plasmodesmata (PD) are crucial structures for intercellular communication
in multicellular plants with remorins being their crucial plant-specific structural
and functional constituents. The PD biogenesis is an intriguing but poorly understood
process. By expressing an Arabidopsis remorin protein in mammalian cells, we have
reconstituted a PD-like filamentous structure, termed remorin filament (RF), connecting
neighboring cells physically and physiologically. Notably, RFs are capable of
transporting macromolecules intercellularly, in a way similar to plant PD. With
further super-resolution microscopic analysis and biochemical characterization,
we found that RFs are also composed of actin filaments, forming the core skeleton
structure, aligned with the remorin protein. This unique heterologous filamentous
structure might explain the molecular mechanism for remorin function as well as
PD construction. Furthermore, remorin protein exhibits a specific distribution
manner in the plasma membrane in mammalian cells, representing a lipid nanodomain,
depending on its lipid modification status. Our studies not only provide crucial
insights into the mechanism of PD biogenesis, but also uncovers unsuspected fundamental
mechanistic and evolutionary links between intercellular communication systems
of plants and animals.
article_processing_charge: No
author:
- first_name: Zhuang
full_name: Wei, Zhuang
last_name: Wei
- first_name: Shutang
full_name: Tan, Shutang
id: 2DE75584-F248-11E8-B48F-1D18A9856A87
last_name: Tan
orcid: 0000-0002-0471-8285
- first_name: Tao
full_name: Liu, Tao
last_name: Liu
- first_name: Yuan
full_name: Wu, Yuan
last_name: Wu
- first_name: Ji-Gang
full_name: Lei, Ji-Gang
last_name: Lei
- first_name: ZhengJun
full_name: Chen, ZhengJun
last_name: Chen
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Hong-Wei
full_name: Xue, Hong-Wei
last_name: Xue
- first_name: Kan
full_name: Liao, Kan
last_name: Liao
citation:
ama: Wei Z, Tan S, Liu T, et al. Plasmodesmata-like intercellular connections by
plant remorin in animal cells. bioRxiv. 2020. doi:10.1101/791137
apa: Wei, Z., Tan, S., Liu, T., Wu, Y., Lei, J.-G., Chen, Z., … Liao, K. (2020).
Plasmodesmata-like intercellular connections by plant remorin in animal cells.
bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/791137
chicago: Wei, Zhuang, Shutang Tan, Tao Liu, Yuan Wu, Ji-Gang Lei, ZhengJun Chen,
Jiří Friml, Hong-Wei Xue, and Kan Liao. “Plasmodesmata-like Intercellular Connections
by Plant Remorin in Animal Cells.” BioRxiv. Cold Spring Harbor Laboratory,
2020. https://doi.org/10.1101/791137.
ieee: Z. Wei et al., “Plasmodesmata-like intercellular connections by plant
remorin in animal cells,” bioRxiv. Cold Spring Harbor Laboratory, 2020.
ista: Wei Z, Tan S, Liu T, Wu Y, Lei J-G, Chen Z, Friml J, Xue H-W, Liao K. 2020.
Plasmodesmata-like intercellular connections by plant remorin in animal cells.
bioRxiv, 10.1101/791137.
mla: Wei, Zhuang, et al. “Plasmodesmata-like Intercellular Connections by Plant
Remorin in Animal Cells.” BioRxiv, Cold Spring Harbor Laboratory, 2020,
doi:10.1101/791137.
short: Z. Wei, S. Tan, T. Liu, Y. Wu, J.-G. Lei, Z. Chen, J. Friml, H.-W. Xue, K.
Liao, BioRxiv (2020).
date_created: 2020-03-21T16:34:42Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2021-01-12T08:14:26Z
day: '19'
department:
- _id: JiFr
doi: 10.1101/791137
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1101/791137
month: '02'
oa: 1
oa_version: Preprint
page: '22'
publication: bioRxiv
publication_status: published
publisher: Cold Spring Harbor Laboratory
status: public
title: Plasmodesmata-like intercellular connections by plant remorin in animal cells
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7603'
abstract:
- lang: eng
text: Plants are exposed to a variety of abiotic and biotic stresses that may result
in DNA damage. Endogenous processes - such as DNA replication, DNA recombination,
respiration, or photosynthesis - are also a threat to DNA integrity. It is therefore
essential to understand the strategies plants have developed for DNA damage detection,
signaling, and repair. Alternative splicing (AS) is a key post-transcriptional
process with a role in regulation of gene expression. Recent studies demonstrate
that the majority of intron-containing genes in plants are alternatively spliced,
highlighting the importance of AS in plant development and stress response. Not
only does AS ensure a versatile proteome and influence the abundance and availability
of proteins greatly, it has also emerged as an important player in the DNA damage
response (DDR) in animals. Despite extensive studies of DDR carried out in plants,
its regulation at the level of AS has not been comprehensively addressed. Here,
we provide some insights into the interplay between AS and DDR in plants.
article_number: '91'
article_processing_charge: No
article_type: original
author:
- first_name: Barbara Anna
full_name: Nimeth, Barbara Anna
last_name: Nimeth
- first_name: Stefan
full_name: Riegler, Stefan
id: FF6018E0-D806-11E9-8E43-0B14E6697425
last_name: Riegler
orcid: 0000-0003-3413-1343
- first_name: Maria
full_name: Kalyna, Maria
last_name: Kalyna
citation:
ama: Nimeth BA, Riegler S, Kalyna M. Alternative splicing and DNA damage response
in plants. Frontiers in Plant Science. 2020;11. doi:10.3389/fpls.2020.00091
apa: Nimeth, B. A., Riegler, S., & Kalyna, M. (2020). Alternative splicing and
DNA damage response in plants. Frontiers in Plant Science. Frontiers. https://doi.org/10.3389/fpls.2020.00091
chicago: Nimeth, Barbara Anna, Stefan Riegler, and Maria Kalyna. “Alternative Splicing
and DNA Damage Response in Plants.” Frontiers in Plant Science. Frontiers,
2020. https://doi.org/10.3389/fpls.2020.00091.
ieee: B. A. Nimeth, S. Riegler, and M. Kalyna, “Alternative splicing and DNA damage
response in plants,” Frontiers in Plant Science, vol. 11. Frontiers, 2020.
ista: Nimeth BA, Riegler S, Kalyna M. 2020. Alternative splicing and DNA damage
response in plants. Frontiers in Plant Science. 11, 91.
mla: Nimeth, Barbara Anna, et al. “Alternative Splicing and DNA Damage Response
in Plants.” Frontiers in Plant Science, vol. 11, 91, Frontiers, 2020, doi:10.3389/fpls.2020.00091.
short: B.A. Nimeth, S. Riegler, M. Kalyna, Frontiers in Plant Science 11 (2020).
date_created: 2020-03-22T23:00:46Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2023-08-18T07:05:18Z
day: '19'
ddc:
- '580'
department:
- _id: FyKo
doi: 10.3389/fpls.2020.00091
external_id:
isi:
- '000518903600001'
file:
- access_level: open_access
checksum: 57c37209f7b6712ced86c0f11b2be74e
content_type: application/pdf
creator: dernst
date_created: 2020-03-23T09:03:40Z
date_updated: 2020-07-14T12:48:01Z
file_id: '7607'
file_name: 2020_FrontiersPlants_Nimeth.pdf
file_size: 507414
relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: Frontiers in Plant Science
publication_identifier:
eissn:
- 1664462X
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Alternative splicing and DNA damage response in plants
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2020'
...
---
_id: '7605'
abstract:
- lang: eng
text: 'Union-Find (or Disjoint-Set Union) is one of the fundamental problems in
computer science; it has been well-studied from both theoretical and practical
perspectives in the sequential case. Recently, there has been mounting interest
in analyzing this problem in the concurrent scenario, and several asymptotically-efficient
algorithms have been proposed. Yet, to date, there is very little known about
the practical performance of concurrent Union-Find. This work addresses this gap.
We evaluate and analyze the performance of several concurrent Union-Find algorithms
and optimization strategies across a wide range of platforms (Intel, AMD, and
ARM) and workloads (social, random, and road networks, as well as integrations
into more complex algorithms). We first observe that, due to the limited computational
cost, the number of induced cache misses is the critical determining factor for
the performance of existing algorithms. We introduce new techniques to reduce
this cost by storing node priorities implicitly and by using plain reads and writes
in a way that does not affect the correctness of the algorithms. Finally, we show
that Union-Find implementations are an interesting application for Transactional
Memory (TM): one of the fastest algorithm variants we discovered is a sequential
one that uses coarse-grained locking with the lock elision optimization to reduce
synchronization cost and increase scalability. '
alternative_title:
- LIPIcs
article_processing_charge: No
arxiv: 1
author:
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
- first_name: Alexander
full_name: Fedorov, Alexander
last_name: Fedorov
- first_name: Nikita
full_name: Koval, Nikita
id: 2F4DB10C-F248-11E8-B48F-1D18A9856A87
last_name: Koval
citation:
ama: 'Alistarh D-A, Fedorov A, Koval N. In search of the fastest concurrent union-find
algorithm. In: 23rd International Conference on Principles of Distributed Systems.
Vol 153. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2020:15:1-15:16. doi:10.4230/LIPIcs.OPODIS.2019.15'
apa: 'Alistarh, D.-A., Fedorov, A., & Koval, N. (2020). In search of the fastest
concurrent union-find algorithm. In 23rd International Conference on Principles
of Distributed Systems (Vol. 153, p. 15:1-15:16). Neuchatal, Switzerland:
Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.OPODIS.2019.15'
chicago: Alistarh, Dan-Adrian, Alexander Fedorov, and Nikita Koval. “In Search of
the Fastest Concurrent Union-Find Algorithm.” In 23rd International Conference
on Principles of Distributed Systems, 153:15:1-15:16. Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2020. https://doi.org/10.4230/LIPIcs.OPODIS.2019.15.
ieee: D.-A. Alistarh, A. Fedorov, and N. Koval, “In search of the fastest concurrent
union-find algorithm,” in 23rd International Conference on Principles of Distributed
Systems, Neuchatal, Switzerland, 2020, vol. 153, p. 15:1-15:16.
ista: 'Alistarh D-A, Fedorov A, Koval N. 2020. In search of the fastest concurrent
union-find algorithm. 23rd International Conference on Principles of Distributed
Systems. OPODIS: International Conference on Principles of Distributed Systems,
LIPIcs, vol. 153, 15:1-15:16.'
mla: Alistarh, Dan-Adrian, et al. “In Search of the Fastest Concurrent Union-Find
Algorithm.” 23rd International Conference on Principles of Distributed Systems,
vol. 153, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020, p. 15:1-15:16,
doi:10.4230/LIPIcs.OPODIS.2019.15.
short: D.-A. Alistarh, A. Fedorov, N. Koval, in:, 23rd International Conference
on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2020, p. 15:1-15:16.
conference:
end_date: 2019-12-19
location: Neuchatal, Switzerland
name: 'OPODIS: International Conference on Principles of Distributed Systems'
start_date: 2019-12-17
date_created: 2020-03-22T23:00:46Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2023-02-23T13:12:12Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
doi: 10.4230/LIPIcs.OPODIS.2019.15
external_id:
arxiv:
- '1911.06347'
file:
- access_level: open_access
checksum: d66f07ecb609d9f02433e39f80a447e9
content_type: application/pdf
creator: dernst
date_created: 2020-03-23T09:22:48Z
date_updated: 2020-07-14T12:48:01Z
file_id: '7609'
file_name: 2019_LIPIcs_Alistarh.pdf
file_size: 13074131
relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: ' 153'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 15:1-15:16
publication: 23rd International Conference on Principles of Distributed Systems
publication_identifier:
isbn:
- '9783959771337'
issn:
- '18688969'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: In search of the fastest concurrent union-find algorithm
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
short: CC BY (3.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 153
year: '2020'
...
---
_id: '7611'
abstract:
- lang: eng
text: We consider a system of N bosons in the limit N→∞, interacting through singular
potentials. For initial data exhibiting Bose–Einstein condensation, the many-body
time evolution is well approximated through a quadratic fluctuation dynamics around
a cubic nonlinear Schrödinger equation of the condensate wave function. We show
that these fluctuations satisfy a (multi-variate) central limit theorem.
acknowledgement: "Simone Rademacher acknowledges partial support from the NCCR SwissMAP.
This project has received\r\nfunding from the European Union’s Horizon 2020 research
and innovation program under the Marie\r\nSkłodowska-Curie Grant Agreement No. 754411.\r\nOpen
access funding provided by Institute of Science and Technology (IST Austria).\r\nS.R.
would like to thank Benjamin Schlein for many fruitful discussions."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Simone Anna Elvira
full_name: Rademacher, Simone Anna Elvira
id: 856966FE-A408-11E9-977E-802DE6697425
last_name: Rademacher
orcid: 0000-0001-5059-4466
citation:
ama: Rademacher SAE. Central limit theorem for Bose gases interacting through singular
potentials. Letters in Mathematical Physics. 2020;110:2143-2174. doi:10.1007/s11005-020-01286-w
apa: Rademacher, S. A. E. (2020). Central limit theorem for Bose gases interacting
through singular potentials. Letters in Mathematical Physics. Springer
Nature. https://doi.org/10.1007/s11005-020-01286-w
chicago: Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting
through Singular Potentials.” Letters in Mathematical Physics. Springer
Nature, 2020. https://doi.org/10.1007/s11005-020-01286-w.
ieee: S. A. E. Rademacher, “Central limit theorem for Bose gases interacting through
singular potentials,” Letters in Mathematical Physics, vol. 110. Springer
Nature, pp. 2143–2174, 2020.
ista: Rademacher SAE. 2020. Central limit theorem for Bose gases interacting through
singular potentials. Letters in Mathematical Physics. 110, 2143–2174.
mla: Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting
through Singular Potentials.” Letters in Mathematical Physics, vol. 110,
Springer Nature, 2020, pp. 2143–74, doi:10.1007/s11005-020-01286-w.
short: S.A.E. Rademacher, Letters in Mathematical Physics 110 (2020) 2143–2174.
date_created: 2020-03-23T11:11:47Z
date_published: 2020-03-12T00:00:00Z
date_updated: 2023-09-05T15:14:50Z
day: '12'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s11005-020-01286-w
ec_funded: 1
external_id:
isi:
- '000551556000006'
file:
- access_level: open_access
checksum: 3bdd41f10ad947b67a45b98f507a7d4a
content_type: application/pdf
creator: dernst
date_created: 2020-11-20T12:04:26Z
date_updated: 2020-11-20T12:04:26Z
file_id: '8784'
file_name: 2020_LettersMathPhysics_Rademacher.pdf
file_size: 478683
relation: main_file
success: 1
file_date_updated: 2020-11-20T12:04:26Z
has_accepted_license: '1'
intvolume: ' 110'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 2143-2174
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Letters in Mathematical Physics
publication_identifier:
eissn:
- 1573-0530
issn:
- 0377-9017
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Central limit theorem for Bose gases interacting through singular potentials
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 110
year: '2020'
...
---
_id: '7618'
abstract:
- lang: eng
text: 'This short note aims to study quantum Hellinger distances investigated recently
by Bhatia et al. (Lett Math Phys 109:1777–1804, 2019) with a particular emphasis
on barycenters. We introduce the family of generalized quantum Hellinger divergences
that are of the form ϕ(A,B)=Tr((1−c)A+cB−AσB), where σ is an arbitrary Kubo–Ando
mean, and c∈(0,1) is the weight of σ. We note that these divergences belong to
the family of maximal quantum f-divergences, and hence are jointly convex, and
satisfy the data processing inequality. We derive a characterization of the barycenter
of finitely many positive definite operators for these generalized quantum Hellinger
divergences. We note that the characterization of the barycenter as the weighted
multivariate 1/2-power mean, that was claimed in Bhatia et al. (2019), is true
in the case of commuting operators, but it is not correct in the general case. '
acknowledgement: "J. Pitrik was supported by the Hungarian Academy of Sciences Lendület-Momentum
Grant for Quantum\r\nInformation Theory, No. 96 141, and by the Hungarian National
Research, Development and Innovation\r\nOffice (NKFIH) via Grants Nos. K119442,
K124152 and KH129601. D. Virosztek was supported by the\r\nISTFELLOW program of
the Institute of Science and Technology Austria (Project Code IC1027FELL01),\r\nby
the European Union’s Horizon 2020 research and innovation program under the Marie\r\nSklodowska-Curie
Grant Agreement No. 846294, and partially supported by the Hungarian National\r\nResearch,
Development and Innovation Office (NKFIH) via Grants Nos. K124152 and KH129601.\r\nWe
are grateful to Milán Mosonyi for drawing our attention to Ref.’s [6,14,15,17,\r\n20,21],
for comments on earlier versions of this paper, and for several discussions on the
topic. We are\r\nalso grateful to Miklós Pálfia for several discussions; to László
Erdös for his essential suggestions on the\r\nstructure and highlights of this paper,
and for his comments on earlier versions; and to the anonymous\r\nreferee for his/her
valuable comments and suggestions."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jozsef
full_name: Pitrik, Jozsef
last_name: Pitrik
- first_name: Daniel
full_name: Virosztek, Daniel
id: 48DB45DA-F248-11E8-B48F-1D18A9856A87
last_name: Virosztek
orcid: 0000-0003-1109-5511
citation:
ama: Pitrik J, Virosztek D. Quantum Hellinger distances revisited. Letters in
Mathematical Physics. 2020;110(8):2039-2052. doi:10.1007/s11005-020-01282-0
apa: Pitrik, J., & Virosztek, D. (2020). Quantum Hellinger distances revisited.
Letters in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s11005-020-01282-0
chicago: Pitrik, Jozsef, and Daniel Virosztek. “Quantum Hellinger Distances Revisited.”
Letters in Mathematical Physics. Springer Nature, 2020. https://doi.org/10.1007/s11005-020-01282-0.
ieee: J. Pitrik and D. Virosztek, “Quantum Hellinger distances revisited,” Letters
in Mathematical Physics, vol. 110, no. 8. Springer Nature, pp. 2039–2052,
2020.
ista: Pitrik J, Virosztek D. 2020. Quantum Hellinger distances revisited. Letters
in Mathematical Physics. 110(8), 2039–2052.
mla: Pitrik, Jozsef, and Daniel Virosztek. “Quantum Hellinger Distances Revisited.”
Letters in Mathematical Physics, vol. 110, no. 8, Springer Nature, 2020,
pp. 2039–52, doi:10.1007/s11005-020-01282-0.
short: J. Pitrik, D. Virosztek, Letters in Mathematical Physics 110 (2020) 2039–2052.
date_created: 2020-03-25T15:57:48Z
date_published: 2020-08-01T00:00:00Z
date_updated: 2023-08-18T10:17:26Z
day: '01'
department:
- _id: LaEr
doi: 10.1007/s11005-020-01282-0
ec_funded: 1
external_id:
arxiv:
- '1903.10455'
isi:
- '000551556000002'
intvolume: ' 110'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1903.10455
month: '08'
oa: 1
oa_version: Preprint
page: 2039-2052
project:
- _id: 26A455A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '846294'
name: Geometric study of Wasserstein spaces and free probability
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: Letters in Mathematical Physics
publication_identifier:
eissn:
- 1573-0530
issn:
- 0377-9017
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantum Hellinger distances revisited
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 110
year: '2020'
...
---
_id: '7619'
abstract:
- lang: eng
text: Cell polarity is a fundamental feature of all multicellular organisms. In
plants, prominent cell polarity markers are PIN auxin transporters crucial for
plant development. To identify novel components involved in cell polarity establishment
and maintenance, we carried out a forward genetic screening with PIN2:PIN1-HA;pin2
Arabidopsis plants, which ectopically express predominantly basally localized
PIN1 in the root epidermal cells leading to agravitropic root growth. From the
screen, we identified the regulator of PIN polarity 12 (repp12) mutation, which
restored gravitropic root growth and caused PIN1-HA polarity switch from basal
to apical side of root epidermal cells. Complementation experiments established
the repp12 causative mutation as an amino acid substitution in Aminophospholipid
ATPase3 (ALA3), a phospholipid flippase with predicted function in vesicle formation.
ala3 T-DNA mutants show defects in many auxin-regulated processes, in asymmetric
auxin distribution and in PIN trafficking. Analysis of quintuple and sextuple
mutants confirmed a crucial role of ALA proteins in regulating plant development
and in PIN trafficking and polarity. Genetic and physical interaction studies
revealed that ALA3 functions together with GNOM and BIG3 ARF GEFs. Taken together,
our results identified ALA3 flippase as an important interactor and regulator
of ARF GEF functioning in PIN polarity, trafficking and auxin-mediated development.
acknowledged_ssus:
- _id: Bio
article_processing_charge: No
article_type: original
author:
- first_name: Xixi
full_name: Zhang, Xixi
id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
last_name: Zhang
orcid: 0000-0001-7048-4627
- first_name: Maciek
full_name: Adamowski, Maciek
id: 45F536D2-F248-11E8-B48F-1D18A9856A87
last_name: Adamowski
orcid: 0000-0001-6463-5257
- first_name: Petra
full_name: Marhavá, Petra
id: 44E59624-F248-11E8-B48F-1D18A9856A87
last_name: Marhavá
- first_name: Shutang
full_name: Tan, Shutang
id: 2DE75584-F248-11E8-B48F-1D18A9856A87
last_name: Tan
orcid: 0000-0002-0471-8285
- first_name: Yuzhou
full_name: Zhang, Yuzhou
id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
last_name: Zhang
orcid: 0000-0003-2627-6956
- first_name: Lesia
full_name: Rodriguez Solovey, Lesia
id: 3922B506-F248-11E8-B48F-1D18A9856A87
last_name: Rodriguez Solovey
orcid: 0000-0002-7244-7237
- first_name: Marta
full_name: Zwiewka, Marta
last_name: Zwiewka
- first_name: Vendula
full_name: Pukyšová, Vendula
last_name: Pukyšová
- first_name: Adrià Sans
full_name: Sánchez, Adrià Sans
last_name: Sánchez
- first_name: Vivek Kumar
full_name: Raxwal, Vivek Kumar
last_name: Raxwal
- first_name: Christian S.
full_name: Hardtke, Christian S.
last_name: Hardtke
- first_name: Tomasz
full_name: Nodzynski, Tomasz
last_name: Nodzynski
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Zhang X, Adamowski M, Marhavá P, et al. Arabidopsis flippases cooperate with
ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin
transporters. The Plant Cell. 2020;32(5):1644-1664. doi:10.1105/tpc.19.00869
apa: Zhang, X., Adamowski, M., Marhavá, P., Tan, S., Zhang, Y., Rodriguez Solovey,
L., … Friml, J. (2020). Arabidopsis flippases cooperate with ARF GTPase exchange
factors to regulate the trafficking and polarity of PIN auxin transporters. The
Plant Cell. American Society of Plant Biologists. https://doi.org/10.1105/tpc.19.00869
chicago: Zhang, Xixi, Maciek Adamowski, Petra Marhavá, Shutang Tan, Yuzhou Zhang,
Lesia Rodriguez Solovey, Marta Zwiewka, et al. “Arabidopsis Flippases Cooperate
with ARF GTPase Exchange Factors to Regulate the Trafficking and Polarity of PIN
Auxin Transporters.” The Plant Cell. American Society of Plant Biologists,
2020. https://doi.org/10.1105/tpc.19.00869.
ieee: X. Zhang et al., “Arabidopsis flippases cooperate with ARF GTPase exchange
factors to regulate the trafficking and polarity of PIN auxin transporters,” The
Plant Cell, vol. 32, no. 5. American Society of Plant Biologists, pp. 1644–1664,
2020.
ista: Zhang X, Adamowski M, Marhavá P, Tan S, Zhang Y, Rodriguez Solovey L, Zwiewka
M, Pukyšová V, Sánchez AS, Raxwal VK, Hardtke CS, Nodzynski T, Friml J. 2020.
Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the
trafficking and polarity of PIN auxin transporters. The Plant Cell. 32(5), 1644–1664.
mla: Zhang, Xixi, et al. “Arabidopsis Flippases Cooperate with ARF GTPase Exchange
Factors to Regulate the Trafficking and Polarity of PIN Auxin Transporters.” The
Plant Cell, vol. 32, no. 5, American Society of Plant Biologists, 2020, pp.
1644–64, doi:10.1105/tpc.19.00869.
short: X. Zhang, M. Adamowski, P. Marhavá, S. Tan, Y. Zhang, L. Rodriguez Solovey,
M. Zwiewka, V. Pukyšová, A.S. Sánchez, V.K. Raxwal, C.S. Hardtke, T. Nodzynski,
J. Friml, The Plant Cell 32 (2020) 1644–1664.
date_created: 2020-03-28T07:39:22Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2023-09-05T12:21:06Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.19.00869
ec_funded: 1
external_id:
isi:
- '000545741500030'
pmid:
- '32193204'
intvolume: ' 32'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1105/tpc.19.00869
month: '05'
oa: 1
oa_version: Published Version
page: 1644-1664
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I03630
name: Molecular mechanisms of endocytic cargo recognition in plants
publication: The Plant Cell
publication_identifier:
eissn:
- 1532-298X
issn:
- 1040-4651
publication_status: published
publisher: American Society of Plant Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate
the trafficking and polarity of PIN auxin transporters
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 32
year: '2020'
...
---
_id: '7622'
abstract:
- lang: eng
text: The International Young Physicists' Tournament (IYPT) continued in 2018 in
Beijing, China and 2019 in Warsaw, Poland with its 31st and 32nd editions. The
IYPT is a modern scientific competition for teams of high school students, also
known as the Physics World Cup. It involves long-term theoretical and experimental
work focused on solving 17 publicly announced open-ended problems in teams of
five. On top of that, teams have to present their solutions in front of other
teams and a scientific jury, and get opposed and reviewed by their peers. Here
we present a brief information about the competition with a specific focus on
one of the IYPT 2018 tasks, the 'Ring Oiler'. This seemingly simple mechanical
problem appeared to be of such a complexity that even the dozens of participating
teams and jurying scientists were not able to solve all of its subtleties.
article_number: '034001'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Martin
full_name: Plesch, Martin
last_name: Plesch
- first_name: Samuel
full_name: Plesník, Samuel
last_name: Plesník
- first_name: Natalia
full_name: Ruzickova, Natalia
id: D2761128-D73D-11E9-A1BF-BA0DE6697425
last_name: Ruzickova
citation:
ama: Plesch M, Plesník S, Ruzickova N. The IYPT and the “Ring Oiler” problem. European
Journal of Physics. 2020;41(3). doi:10.1088/1361-6404/ab6414
apa: Plesch, M., Plesník, S., & Ruzickova, N. (2020). The IYPT and the “Ring
Oiler” problem. European Journal of Physics. IOP Publishing. https://doi.org/10.1088/1361-6404/ab6414
chicago: Plesch, Martin, Samuel Plesník, and Natalia Ruzickova. “The IYPT and the
‘Ring Oiler’ Problem.” European Journal of Physics. IOP Publishing, 2020.
https://doi.org/10.1088/1361-6404/ab6414.
ieee: M. Plesch, S. Plesník, and N. Ruzickova, “The IYPT and the ‘Ring Oiler’ problem,”
European Journal of Physics, vol. 41, no. 3. IOP Publishing, 2020.
ista: Plesch M, Plesník S, Ruzickova N. 2020. The IYPT and the ‘Ring Oiler’ problem.
European Journal of Physics. 41(3), 034001.
mla: Plesch, Martin, et al. “The IYPT and the ‘Ring Oiler’ Problem.” European
Journal of Physics, vol. 41, no. 3, 034001, IOP Publishing, 2020, doi:10.1088/1361-6404/ab6414.
short: M. Plesch, S. Plesník, N. Ruzickova, European Journal of Physics 41 (2020).
date_created: 2020-03-31T11:25:04Z
date_published: 2020-02-24T00:00:00Z
date_updated: 2023-08-18T10:18:29Z
day: '24'
ddc:
- '530'
department:
- _id: FyKo
doi: 10.1088/1361-6404/ab6414
external_id:
arxiv:
- '1910.03290'
isi:
- '000537425400001'
file:
- access_level: open_access
checksum: 47dda164e33b6c0c6c3ed14aad298376
content_type: application/pdf
creator: dernst
date_created: 2020-04-06T08:53:53Z
date_updated: 2020-07-14T12:48:01Z
file_id: '7641'
file_name: 2020_EuropJourPhysics_Plesch.pdf
file_size: 1533672
relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: ' 41'
isi: 1
issue: '3'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: European Journal of Physics
publication_identifier:
eissn:
- '13616404'
issn:
- '01430807'
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: The IYPT and the 'Ring Oiler' problem
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 41
year: '2020'
...
---
_id: '7623'
abstract:
- lang: eng
text: A two-dimensional mathematical model for cells migrating without adhesion
capabilities is presented and analyzed. Cells are represented by their cortex,
which is modeled as an elastic curve, subject to an internal pressure force. Net
polymerization or depolymerization in the cortex is modeled via local addition
or removal of material, driving a cortical flow. The model takes the form of a
fully nonlinear degenerate parabolic system. An existence analysis is carried
out by adapting ideas from the theory of gradient flows. Numerical simulations
show that these simple rules can account for the behavior observed in experiments,
suggesting a possible mechanical mechanism for adhesion-independent motility.
acknowledgement: This work has been supported by the Vienna Science and Technology
Fund, Grant no. LS13-029. G.J. and C.S. also acknowledge support by the Austrian
Science Fund, Grants no. W1245, F 65, and W1261, as well as by the Fondation Sciences
Mathématiques de Paris, and by Paris-Sciences-et-Lettres.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Gaspard
full_name: Jankowiak, Gaspard
last_name: Jankowiak
- first_name: Diane
full_name: Peurichard, Diane
last_name: Peurichard
- first_name: Anne
full_name: Reversat, Anne
id: 35B76592-F248-11E8-B48F-1D18A9856A87
last_name: Reversat
orcid: 0000-0003-0666-8928
- first_name: Christian
full_name: Schmeiser, Christian
last_name: Schmeiser
- first_name: Michael K
full_name: Sixt, Michael K
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
citation:
ama: Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. Modeling adhesion-independent
cell migration. Mathematical Models and Methods in Applied Sciences. 2020;30(3):513-537.
doi:10.1142/S021820252050013X
apa: Jankowiak, G., Peurichard, D., Reversat, A., Schmeiser, C., & Sixt, M.
K. (2020). Modeling adhesion-independent cell migration. Mathematical Models
and Methods in Applied Sciences. World Scientific. https://doi.org/10.1142/S021820252050013X
chicago: Jankowiak, Gaspard, Diane Peurichard, Anne Reversat, Christian Schmeiser,
and Michael K Sixt. “Modeling Adhesion-Independent Cell Migration.” Mathematical
Models and Methods in Applied Sciences. World Scientific, 2020. https://doi.org/10.1142/S021820252050013X.
ieee: G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, and M. K. Sixt, “Modeling
adhesion-independent cell migration,” Mathematical Models and Methods in Applied
Sciences, vol. 30, no. 3. World Scientific, pp. 513–537, 2020.
ista: Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. 2020. Modeling
adhesion-independent cell migration. Mathematical Models and Methods in Applied
Sciences. 30(3), 513–537.
mla: Jankowiak, Gaspard, et al. “Modeling Adhesion-Independent Cell Migration.”
Mathematical Models and Methods in Applied Sciences, vol. 30, no. 3, World
Scientific, 2020, pp. 513–37, doi:10.1142/S021820252050013X.
short: G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, M.K. Sixt, Mathematical
Models and Methods in Applied Sciences 30 (2020) 513–537.
date_created: 2020-03-31T11:25:05Z
date_published: 2020-03-18T00:00:00Z
date_updated: 2023-08-18T10:18:56Z
day: '18'
department:
- _id: MiSi
doi: 10.1142/S021820252050013X
external_id:
arxiv:
- '1903.09426'
isi:
- '000525349900003'
intvolume: ' 30'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1903.09426
month: '03'
oa: 1
oa_version: Preprint
page: 513-537
project:
- _id: 25AD6156-B435-11E9-9278-68D0E5697425
grant_number: LS13-029
name: Modeling of Polarization and Motility of Leukocytes in Three-Dimensional Environments
publication: Mathematical Models and Methods in Applied Sciences
publication_identifier:
issn:
- '02182025'
publication_status: published
publisher: World Scientific
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modeling adhesion-independent cell migration
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 30
year: '2020'
...
---
_id: '7629'
abstract:
- lang: eng
text: "This thesis is based on three main topics: In the first part, we study convergence
of discrete gradient flow structures associated with regular finite-volume discretisations
of Fokker-Planck equations. We show evolutionary I convergence of the discrete
gradient flows to the L2-Wasserstein gradient flow corresponding to the solution
of a Fokker-Planck\r\nequation in arbitrary dimension d >= 1. Along the argument,
we prove Mosco- and I-convergence results for discrete energy functionals, which
are of independent interest for convergence of equivalent gradient flow structures
in Hilbert spaces.\r\nThe second part investigates L2-Wasserstein flows on metric
graph. The starting point is a Benamou-Brenier formula for the L2-Wasserstein
distance, which is proved via a regularisation scheme for solutions of the continuity
equation, adapted to the peculiar geometric structure of metric graphs. Based
on those results, we show that the L2-Wasserstein space over a metric graph admits
a gradient flow which may be identified as a solution of a Fokker-Planck equation.\r\nIn
the third part, we focus again on the discrete gradient flows, already encountered
in the first part. We propose a variational structure which extends the gradient
flow structure to Markov chains violating the detailed-balance conditions. Using
this structure, we characterise contraction estimates for the discrete heat flow
in terms of convexity of\r\ncorresponding path-dependent energy functionals. In
addition, we use this approach to derive several functional inequalities for said
functionals."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Dominik L
full_name: Forkert, Dominik L
id: 35C79D68-F248-11E8-B48F-1D18A9856A87
last_name: Forkert
citation:
ama: Forkert DL. Gradient flows in spaces of probability measures for finite-volume
schemes, metric graphs and non-reversible Markov chains. 2020. doi:10.15479/AT:ISTA:7629
apa: Forkert, D. L. (2020). Gradient flows in spaces of probability measures
for finite-volume schemes, metric graphs and non-reversible Markov chains.
Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:7629
chicago: Forkert, Dominik L. “Gradient Flows in Spaces of Probability Measures for
Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains.” Institute
of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:7629.
ieee: D. L. Forkert, “Gradient flows in spaces of probability measures for finite-volume
schemes, metric graphs and non-reversible Markov chains,” Institute of Science
and Technology Austria, 2020.
ista: Forkert DL. 2020. Gradient flows in spaces of probability measures for finite-volume
schemes, metric graphs and non-reversible Markov chains. Institute of Science
and Technology Austria.
mla: Forkert, Dominik L. Gradient Flows in Spaces of Probability Measures for
Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains. Institute
of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:7629.
short: D.L. Forkert, Gradient Flows in Spaces of Probability Measures for Finite-Volume
Schemes, Metric Graphs and Non-Reversible Markov Chains, Institute of Science
and Technology Austria, 2020.
date_created: 2020-04-02T06:40:23Z
date_published: 2020-03-31T00:00:00Z
date_updated: 2023-09-07T13:03:12Z
day: '31'
ddc:
- '510'
degree_awarded: PhD
department:
- _id: JaMa
doi: 10.15479/AT:ISTA:7629
ec_funded: 1
file:
- access_level: open_access
checksum: c814a1a6195269ca6fe48b0dca45ae8a
content_type: application/pdf
creator: dernst
date_created: 2020-04-14T10:47:59Z
date_updated: 2020-07-14T12:48:01Z
file_id: '7657'
file_name: Thesis_Forkert_PDFA.pdf
file_size: 3297129
relation: main_file
- access_level: closed
checksum: ceafb53f923d1b5bdf14b2b0f22e4a81
content_type: application/x-zip-compressed
creator: dernst
date_created: 2020-04-14T10:47:59Z
date_updated: 2020-07-14T12:48:01Z
file_id: '7658'
file_name: Thesis_Forkert_source.zip
file_size: 1063908
relation: source_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '154'
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Jan
full_name: Maas, Jan
id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
last_name: Maas
orcid: 0000-0002-0845-1338
title: Gradient flows in spaces of probability measures for finite-volume schemes,
metric graphs and non-reversible Markov chains
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '7632'
abstract:
- lang: eng
text: The posterior parietal cortex (PPC) and frontal motor areas comprise a cortical
network supporting goal-directed behaviour, with functions including sensorimotor
transformations and decision making. In primates, this network links performed
and observed actions via mirror neurons, which fire both when individuals perform
an action and when they observe the same action performed by a conspecific. Mirror
neurons are believed to be important for social learning, but it is not known
whether mirror-like neurons occur in similar networks in other social species,
such as rodents, or if they can be measured in such models using paradigms where
observers passively view a demonstrator. Therefore, we imaged Ca2+ responses in
PPC and secondary motor cortex (M2) while mice performed and observed pellet-reaching
and wheel-running tasks, and found that cell populations in both areas robustly
encoded several naturalistic behaviours. However, neural responses to the same
set of observed actions were absent, although we verified that observer mice were
attentive to performers and that PPC neurons responded reliably to visual cues.
Statistical modelling also indicated that executed actions outperformed observed
actions in predicting neural responses. These results raise the possibility that
sensorimotor action recognition in rodents could take place outside of the parieto-frontal
circuit, and underscore that detecting socially-driven neural coding depends critically
on the species and behavioural paradigm used.
article_number: '5559'
article_processing_charge: No
article_type: original
author:
- first_name: Tuce
full_name: Tombaz, Tuce
last_name: Tombaz
- first_name: Benjamin A.
full_name: Dunn, Benjamin A.
last_name: Dunn
- first_name: Karoline
full_name: Hovde, Karoline
last_name: Hovde
- first_name: Ryan J
full_name: Cubero, Ryan J
id: 850B2E12-9CD4-11E9-837F-E719E6697425
last_name: Cubero
orcid: 0000-0003-0002-1867
- first_name: Bartul
full_name: Mimica, Bartul
last_name: Mimica
- first_name: Pranav
full_name: Mamidanna, Pranav
last_name: Mamidanna
- first_name: Yasser
full_name: Roudi, Yasser
last_name: Roudi
- first_name: Jonathan R.
full_name: Whitlock, Jonathan R.
last_name: Whitlock
citation:
ama: Tombaz T, Dunn BA, Hovde K, et al. Action representation in the mouse parieto-frontal
network. Scientific reports. 2020;10(1). doi:10.1038/s41598-020-62089-6
apa: Tombaz, T., Dunn, B. A., Hovde, K., Cubero, R. J., Mimica, B., Mamidanna, P.,
… Whitlock, J. R. (2020). Action representation in the mouse parieto-frontal network.
Scientific Reports. Springer Nature. https://doi.org/10.1038/s41598-020-62089-6
chicago: Tombaz, Tuce, Benjamin A. Dunn, Karoline Hovde, Ryan J Cubero, Bartul Mimica,
Pranav Mamidanna, Yasser Roudi, and Jonathan R. Whitlock. “Action Representation
in the Mouse Parieto-Frontal Network.” Scientific Reports. Springer Nature,
2020. https://doi.org/10.1038/s41598-020-62089-6.
ieee: T. Tombaz et al., “Action representation in the mouse parieto-frontal
network,” Scientific reports, vol. 10, no. 1. Springer Nature, 2020.
ista: Tombaz T, Dunn BA, Hovde K, Cubero RJ, Mimica B, Mamidanna P, Roudi Y, Whitlock
JR. 2020. Action representation in the mouse parieto-frontal network. Scientific
reports. 10(1), 5559.
mla: Tombaz, Tuce, et al. “Action Representation in the Mouse Parieto-Frontal Network.”
Scientific Reports, vol. 10, no. 1, 5559, Springer Nature, 2020, doi:10.1038/s41598-020-62089-6.
short: T. Tombaz, B.A. Dunn, K. Hovde, R.J. Cubero, B. Mimica, P. Mamidanna, Y.
Roudi, J.R. Whitlock, Scientific Reports 10 (2020).
date_created: 2020-04-05T22:00:47Z
date_published: 2020-03-27T00:00:00Z
date_updated: 2023-08-18T10:25:13Z
day: '27'
ddc:
- '570'
department:
- _id: SaSi
doi: 10.1038/s41598-020-62089-6
external_id:
isi:
- '000560406800007'
file:
- access_level: open_access
checksum: e6cfaaaf7986532132934400038b824a
content_type: application/pdf
creator: dernst
date_created: 2020-04-06T10:44:23Z
date_updated: 2020-07-14T12:48:01Z
file_id: '7644'
file_name: 2020_ScientificReports_Tombaz.pdf
file_size: 2621249
relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: ' 10'
isi: 1
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Scientific reports
publication_identifier:
eissn:
- '20452322'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Action representation in the mouse parieto-frontal network
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 10
year: '2020'
...
---
_id: '7634'
abstract:
- lang: eng
text: Assemblies of colloidal semiconductor nanocrystals (NCs) in the form of thin
solid films leverage the size-dependent quantum confinement properties and the
wet chemical methods vital for the development of the emerging solution-processable
electronics, photonics, and optoelectronics technologies. The ability to control
the charge carrier transport in the colloidal NC assemblies is fundamental for
altering their electronic and optical properties for the desired applications.
Here we demonstrate a strategy to render the solids of narrow-bandgap NC assemblies
exclusively electron-transporting by creating a type-II heterojunction via shelling.
Electronic transport of molecularly cross-linked PbTe@PbS core@shell NC assemblies
is measured using both a conventional solid gate transistor and an electric-double-layer
transistor, as well as compared with those of core-only PbTe NCs. In contrast
to the ambipolar characteristics demonstrated by many narrow-bandgap NCs, the
core@shell NCs exhibit exclusive n-type transport, i.e., drastically suppressed
contribution of holes to the overall transport. The PbS shell that forms a type-II
heterojunction assists the selective carrier transport by heavy doping of electrons
into the PbTe-core conduction level and simultaneously strongly localizes the
holes within the NC core valence level. This strongly enhanced n-type transport
makes these core@shell NCs suitable for applications where ambipolar characteristics
should be actively suppressed, in particular, for thermoelectric and electron-transporting
layers in photovoltaic devices.
acknowledgement: This work is partly supported by Grants-in-Aid for Scientific Research
by Young Scientist A (KAKENHI Wakate-A) No. JP17H04802, Grants-in-Aid for Scientific
Research No. JP19H05602 from the Japan Society for the Promotion of Science, and
RIKEN Incentive Research Grant (Shoreikadai) 2016. M.V.K. and M.I. acknowledge financial
support from the European Union (EU) via FP7 ERC Starting Grant 2012 (Project NANOSOLID,
GA No. 306733) and ETH Zurich via ETH career seed grant (SEED-18 16-2). Support
from Cambridge Display Technology, Ltd., and Sumitomo Chemical Company is also acknowledged.
We thank Mrs. T. Kikitsu and Dr. D. Hashizume (RIKEN-CEMS) for access to the transmission
electron microscope facility.
article_processing_charge: No
article_type: original
author:
- first_name: Retno
full_name: Miranti, Retno
last_name: Miranti
- first_name: Daiki
full_name: Shin, Daiki
last_name: Shin
- first_name: Ricky Dwi
full_name: Septianto, Ricky Dwi
last_name: Septianto
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Maksym V.
full_name: Kovalenko, Maksym V.
last_name: Kovalenko
- first_name: Nobuhiro
full_name: Matsushita, Nobuhiro
last_name: Matsushita
- first_name: Yoshihiro
full_name: Iwasa, Yoshihiro
last_name: Iwasa
- first_name: Satria Zulkarnaen
full_name: Bisri, Satria Zulkarnaen
last_name: Bisri
citation:
ama: Miranti R, Shin D, Septianto RD, et al. Exclusive electron transport in Core@Shell
PbTe@PbS colloidal semiconductor nanocrystal assemblies. ACS Nano. 2020;14(3):3242-3250.
doi:10.1021/acsnano.9b08687
apa: Miranti, R., Shin, D., Septianto, R. D., Ibáñez, M., Kovalenko, M. V., Matsushita,
N., … Bisri, S. Z. (2020). Exclusive electron transport in Core@Shell PbTe@PbS
colloidal semiconductor nanocrystal assemblies. ACS Nano. American Chemical
Society. https://doi.org/10.1021/acsnano.9b08687
chicago: Miranti, Retno, Daiki Shin, Ricky Dwi Septianto, Maria Ibáñez, Maksym V.
Kovalenko, Nobuhiro Matsushita, Yoshihiro Iwasa, and Satria Zulkarnaen Bisri.
“Exclusive Electron Transport in Core@Shell PbTe@PbS Colloidal Semiconductor Nanocrystal
Assemblies.” ACS Nano. American Chemical Society, 2020. https://doi.org/10.1021/acsnano.9b08687.
ieee: R. Miranti et al., “Exclusive electron transport in Core@Shell PbTe@PbS
colloidal semiconductor nanocrystal assemblies,” ACS Nano, vol. 14, no.
3. American Chemical Society, pp. 3242–3250, 2020.
ista: Miranti R, Shin D, Septianto RD, Ibáñez M, Kovalenko MV, Matsushita N, Iwasa
Y, Bisri SZ. 2020. Exclusive electron transport in Core@Shell PbTe@PbS colloidal
semiconductor nanocrystal assemblies. ACS Nano. 14(3), 3242–3250.
mla: Miranti, Retno, et al. “Exclusive Electron Transport in Core@Shell PbTe@PbS
Colloidal Semiconductor Nanocrystal Assemblies.” ACS Nano, vol. 14, no.
3, American Chemical Society, 2020, pp. 3242–50, doi:10.1021/acsnano.9b08687.
short: R. Miranti, D. Shin, R.D. Septianto, M. Ibáñez, M.V. Kovalenko, N. Matsushita,
Y. Iwasa, S.Z. Bisri, ACS Nano 14 (2020) 3242–3250.
date_created: 2020-04-05T22:00:48Z
date_published: 2020-03-24T00:00:00Z
date_updated: 2023-08-18T10:25:40Z
day: '24'
department:
- _id: MaIb
doi: 10.1021/acsnano.9b08687
external_id:
isi:
- '000526301400057'
pmid:
- '32073817'
intvolume: ' 14'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa_version: None
page: 3242-3250
pmid: 1
publication: ACS Nano
publication_identifier:
eissn:
- 1936-086X
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor
nanocrystal assemblies
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2020'
...
---
_id: '7635'
abstract:
- lang: eng
text: Concurrent programming can be notoriously complex and error-prone. Programming
bugs can arise from a variety of sources, such as operation re-reordering, or
incomplete understanding of the memory model. A variety of formal and model checking
methods have been developed to address this fundamental difficulty. While technically
interesting, existing academic methods are still hard to apply to the large codebases
typical of industrial deployments, which limits their practical impact.
article_processing_charge: No
author:
- first_name: Nikita
full_name: Koval, Nikita
id: 2F4DB10C-F248-11E8-B48F-1D18A9856A87
last_name: Koval
- first_name: Mariia
full_name: Sokolova, Mariia
id: 26217AE4-77FF-11EA-8101-AD24D49E41F4
last_name: Sokolova
- first_name: Alexander
full_name: Fedorov, Alexander
last_name: Fedorov
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
- first_name: Dmitry
full_name: Tsitelov, Dmitry
last_name: Tsitelov
citation:
ama: 'Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. Testing concurrency
on the JVM with Lincheck. In: Proceedings of the ACM SIGPLAN Symposium on Principles
and Practice of Parallel Programming, PPOPP. Association for Computing Machinery;
2020:423-424. doi:10.1145/3332466.3374503'
apa: 'Koval, N., Sokolova, M., Fedorov, A., Alistarh, D.-A., & Tsitelov, D.
(2020). Testing concurrency on the JVM with Lincheck. In Proceedings of the
ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP
(pp. 423–424). San Diego, CA, United States: Association for Computing Machinery.
https://doi.org/10.1145/3332466.3374503'
chicago: Koval, Nikita, Mariia Sokolova, Alexander Fedorov, Dan-Adrian Alistarh,
and Dmitry Tsitelov. “Testing Concurrency on the JVM with Lincheck.” In Proceedings
of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
PPOPP, 423–24. Association for Computing Machinery, 2020. https://doi.org/10.1145/3332466.3374503.
ieee: N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, and D. Tsitelov, “Testing
concurrency on the JVM with Lincheck,” in Proceedings of the ACM SIGPLAN Symposium
on Principles and Practice of Parallel Programming, PPOPP, San Diego, CA,
United States, 2020, pp. 423–424.
ista: 'Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. 2020. Testing concurrency
on the JVM with Lincheck. Proceedings of the ACM SIGPLAN Symposium on Principles
and Practice of Parallel Programming, PPOPP. PPOPP: Principles and Practice of
Parallel Programming, 423–424.'
mla: Koval, Nikita, et al. “Testing Concurrency on the JVM with Lincheck.” Proceedings
of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
PPOPP, Association for Computing Machinery, 2020, pp. 423–24, doi:10.1145/3332466.3374503.
short: N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, D. Tsitelov, in:, Proceedings
of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
PPOPP, Association for Computing Machinery, 2020, pp. 423–424.
conference:
end_date: 2020-02-26
location: San Diego, CA, United States
name: 'PPOPP: Principles and Practice of Parallel Programming'
start_date: 2020-02-22
date_created: 2020-04-05T22:00:48Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2024-02-28T12:53:46Z
day: '19'
department:
- _id: DaAl
doi: 10.1145/3332466.3374503
language:
- iso: eng
month: '02'
oa_version: None
page: 423-424
publication: Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of
Parallel Programming, PPOPP
publication_identifier:
isbn:
- '9781450368186'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Testing concurrency on the JVM with Lincheck
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7636'
abstract:
- lang: eng
text: "Balanced search trees typically use key comparisons to guide their operations,
and achieve logarithmic running time. By relying on numerical properties of the
keys, interpolation search achieves lower search complexity and better performance.
Although interpolation-based data structures were investigated in the past, their
non-blocking concurrent variants have received very little attention so far.\r\nIn
this paper, we propose the first non-blocking implementation of the classic interpolation
search tree (IST) data structure. For arbitrary key distributions, the data structure
ensures worst-case O(log n + p) amortized time for search, insertion and deletion
traversals. When the input key distributions are smooth, lookups run in expected
O(log log n + p) time, and insertion and deletion run in expected amortized O(log
log n + p) time, where p is a bound on the number of threads. To improve the scalability
of concurrent insertion and deletion, we propose a novel parallel rebuilding technique,
which should be of independent interest.\r\nWe evaluate whether the theoretical
improvements translate to practice by implementing the concurrent interpolation
search tree, and benchmarking it on uniform and nonuniform key distributions,
for dataset sizes in the millions to billions of keys. Relative to the state-of-the-art
concurrent data structures, the concurrent interpolation search tree achieves
performance improvements of up to 15% under high update rates, and of up to 50%
under moderate update rates. Further, ISTs exhibit up to 2X less cache-misses,
and consume 1.2 -- 2.6X less memory compared to the next best alternative on typical
dataset sizes. We find that the results are surprisingly robust to distributional
skew, which suggests that our data structure can be a promising alternative to
classic concurrent search structures."
acknowledgement: "This project has received funding from the European Research Council
(ERC) under the European Union Horizon 2020 research and innovation program, grant
agreement No 805223, ERC Starting Grant ScaleML. We acknowledge the support of the
Natural Sciences and\r\nEngineering Research Council of Canada (NSERC). "
article_processing_charge: No
author:
- first_name: Trevor A
full_name: Brown, Trevor A
id: 3569F0A0-F248-11E8-B48F-1D18A9856A87
last_name: Brown
- first_name: Aleksandar
full_name: Prokopec, Aleksandar
last_name: Prokopec
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
citation:
ama: 'Brown TA, Prokopec A, Alistarh D-A. Non-blocking interpolation search trees
with doubly-logarithmic running time. In: Proceedings of the ACM SIGPLAN Symposium
on Principles and Practice of Parallel Programming. Association for Computing
Machinery; 2020:276-291. doi:10.1145/3332466.3374542'
apa: 'Brown, T. A., Prokopec, A., & Alistarh, D.-A. (2020). Non-blocking interpolation
search trees with doubly-logarithmic running time. In Proceedings of the ACM
SIGPLAN Symposium on Principles and Practice of Parallel Programming (pp.
276–291). San Diego, CA, United States: Association for Computing Machinery. https://doi.org/10.1145/3332466.3374542'
chicago: Brown, Trevor A, Aleksandar Prokopec, and Dan-Adrian Alistarh. “Non-Blocking
Interpolation Search Trees with Doubly-Logarithmic Running Time.” In Proceedings
of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
276–91. Association for Computing Machinery, 2020. https://doi.org/10.1145/3332466.3374542.
ieee: T. A. Brown, A. Prokopec, and D.-A. Alistarh, “Non-blocking interpolation
search trees with doubly-logarithmic running time,” in Proceedings of the ACM
SIGPLAN Symposium on Principles and Practice of Parallel Programming, San
Diego, CA, United States, 2020, pp. 276–291.
ista: 'Brown TA, Prokopec A, Alistarh D-A. 2020. Non-blocking interpolation search
trees with doubly-logarithmic running time. Proceedings of the ACM SIGPLAN Symposium
on Principles and Practice of Parallel Programming. PPOPP: Principles and Practice
of Parallel Programming, 276–291.'
mla: Brown, Trevor A., et al. “Non-Blocking Interpolation Search Trees with Doubly-Logarithmic
Running Time.” Proceedings of the ACM SIGPLAN Symposium on Principles and Practice
of Parallel Programming, Association for Computing Machinery, 2020, pp. 276–91,
doi:10.1145/3332466.3374542.
short: T.A. Brown, A. Prokopec, D.-A. Alistarh, in:, Proceedings of the ACM SIGPLAN
Symposium on Principles and Practice of Parallel Programming, Association for
Computing Machinery, 2020, pp. 276–291.
conference:
end_date: 2020-02-26
location: San Diego, CA, United States
name: 'PPOPP: Principles and Practice of Parallel Programming'
start_date: 2020-02-22
date_created: 2020-04-05T22:00:49Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2024-02-28T12:55:14Z
day: '19'
department:
- _id: DaAl
doi: 10.1145/3332466.3374542
ec_funded: 1
external_id:
isi:
- '000564476500020'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1145/3332466.3374542
month: '02'
oa: 1
oa_version: Published Version
page: 276-291
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '805223'
name: Elastic Coordination for Scalable Machine Learning
publication: Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of
Parallel Programming
publication_identifier:
isbn:
- '9781450368186'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Non-blocking interpolation search trees with doubly-logarithmic running time
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7637'
abstract:
- lang: eng
text: The evolution of finitely many particles obeying Langevin dynamics is described
by Dean–Kawasaki equations, a class of stochastic equations featuring a non-Lipschitz
multiplicative noise in divergence form. We derive a regularised Dean–Kawasaki
model based on second order Langevin dynamics by analysing a system of particles
interacting via a pairwise potential. Key tools of our analysis are the propagation
of chaos and Simon's compactness criterion. The model we obtain is a small-noise
stochastic perturbation of the undamped McKean–Vlasov equation. We also provide
a high-probability result for existence and uniqueness for our model.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Federico
full_name: Cornalba, Federico
id: 2CEB641C-A400-11E9-A717-D712E6697425
last_name: Cornalba
orcid: 0000-0002-6269-5149
- first_name: Tony
full_name: Shardlow, Tony
last_name: Shardlow
- first_name: Johannes
full_name: Zimmer, Johannes
last_name: Zimmer
citation:
ama: Cornalba F, Shardlow T, Zimmer J. From weakly interacting particles to a regularised
Dean-Kawasaki model. Nonlinearity. 2020;33(2):864-891. doi:10.1088/1361-6544/ab5174
apa: Cornalba, F., Shardlow, T., & Zimmer, J. (2020). From weakly interacting
particles to a regularised Dean-Kawasaki model. Nonlinearity. IOP Publishing.
https://doi.org/10.1088/1361-6544/ab5174
chicago: Cornalba, Federico, Tony Shardlow, and Johannes Zimmer. “From Weakly Interacting
Particles to a Regularised Dean-Kawasaki Model.” Nonlinearity. IOP Publishing,
2020. https://doi.org/10.1088/1361-6544/ab5174.
ieee: F. Cornalba, T. Shardlow, and J. Zimmer, “From weakly interacting particles
to a regularised Dean-Kawasaki model,” Nonlinearity, vol. 33, no. 2. IOP
Publishing, pp. 864–891, 2020.
ista: Cornalba F, Shardlow T, Zimmer J. 2020. From weakly interacting particles
to a regularised Dean-Kawasaki model. Nonlinearity. 33(2), 864–891.
mla: Cornalba, Federico, et al. “From Weakly Interacting Particles to a Regularised
Dean-Kawasaki Model.” Nonlinearity, vol. 33, no. 2, IOP Publishing, 2020,
pp. 864–91, doi:10.1088/1361-6544/ab5174.
short: F. Cornalba, T. Shardlow, J. Zimmer, Nonlinearity 33 (2020) 864–891.
date_created: 2020-04-05T22:00:49Z
date_published: 2020-01-10T00:00:00Z
date_updated: 2023-08-18T10:26:07Z
day: '10'
department:
- _id: JuFi
doi: 10.1088/1361-6544/ab5174
external_id:
arxiv:
- '1811.06448'
isi:
- '000508175400001'
intvolume: ' 33'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1811.06448
month: '01'
oa: 1
oa_version: Preprint
page: 864-891
publication: Nonlinearity
publication_identifier:
eissn:
- '13616544'
issn:
- '09517715'
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: From weakly interacting particles to a regularised Dean-Kawasaki model
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 33
year: '2020'
...
---
_id: '7638'
abstract:
- lang: eng
text: Following on from our recent work, we investigate a stochastic approach to
non-equilibrium quantum spin systems. We show how the method can be applied to
a variety of physical observables and for different initial conditions. We provide
exact formulae of broad applicability for the time-dependence of expectation values
and correlation functions following a quantum quench in terms of averages over
classical stochastic processes. We further explore the behavior of the classical
stochastic variables in the presence of dynamical quantum phase transitions, including
results for their distributions and correlation functions. We provide details
on the numerical solution of the associated stochastic differential equations,
and examine the growth of fluctuations in the classical description. We discuss
the strengths and limitations of the current implementation of the stochastic
approach and the potential for further development.
article_number: '013106'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Stefano
full_name: De Nicola, Stefano
id: 42832B76-F248-11E8-B48F-1D18A9856A87
last_name: De Nicola
orcid: 0000-0002-4842-6671
- first_name: B.
full_name: Doyon, B.
last_name: Doyon
- first_name: M. J.
full_name: Bhaseen, M. J.
last_name: Bhaseen
citation:
ama: 'De Nicola S, Doyon B, Bhaseen MJ. Non-equilibrium quantum spin dynamics from
classical stochastic processes. Journal of Statistical Mechanics: Theory and
Experiment. 2020;2020(1). doi:10.1088/1742-5468/ab6093'
apa: 'De Nicola, S., Doyon, B., & Bhaseen, M. J. (2020). Non-equilibrium quantum
spin dynamics from classical stochastic processes. Journal of Statistical Mechanics:
Theory and Experiment. IOP Publishing. https://doi.org/10.1088/1742-5468/ab6093'
chicago: 'De Nicola, Stefano, B. Doyon, and M. J. Bhaseen. “Non-Equilibrium Quantum
Spin Dynamics from Classical Stochastic Processes.” Journal of Statistical
Mechanics: Theory and Experiment. IOP Publishing, 2020. https://doi.org/10.1088/1742-5468/ab6093.'
ieee: 'S. De Nicola, B. Doyon, and M. J. Bhaseen, “Non-equilibrium quantum spin
dynamics from classical stochastic processes,” Journal of Statistical Mechanics:
Theory and Experiment, vol. 2020, no. 1. IOP Publishing, 2020.'
ista: 'De Nicola S, Doyon B, Bhaseen MJ. 2020. Non-equilibrium quantum spin dynamics
from classical stochastic processes. Journal of Statistical Mechanics: Theory
and Experiment. 2020(1), 013106.'
mla: 'De Nicola, Stefano, et al. “Non-Equilibrium Quantum Spin Dynamics from Classical
Stochastic Processes.” Journal of Statistical Mechanics: Theory and Experiment,
vol. 2020, no. 1, 013106, IOP Publishing, 2020, doi:10.1088/1742-5468/ab6093.'
short: 'S. De Nicola, B. Doyon, M.J. Bhaseen, Journal of Statistical Mechanics:
Theory and Experiment 2020 (2020).'
date_created: 2020-04-05T22:00:50Z
date_published: 2020-01-22T00:00:00Z
date_updated: 2023-08-18T10:27:15Z
day: '22'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1088/1742-5468/ab6093
ec_funded: 1
external_id:
arxiv:
- '1909.13142'
isi:
- '000520187500001'
file:
- access_level: open_access
checksum: 4030e683c15d30b7b4794ec7dc1b6537
content_type: application/pdf
creator: dernst
date_created: 2020-04-06T13:15:49Z
date_updated: 2020-07-14T12:48:01Z
file_id: '7648'
file_name: 2020_JournStatisticalMech_DeNicola.pdf
file_size: 3159026
relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: ' 2020'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: 'Journal of Statistical Mechanics: Theory and Experiment'
publication_identifier:
eissn:
- '17425468'
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Non-equilibrium quantum spin dynamics from classical stochastic processes
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 2020
year: '2020'
...
---
_id: '7643'
acknowledgement: 'This work was supported by the European Research Council under the
European Union’s Horizon 2020 research and innovation Programme (ERC grant agreement
number 742985), and the Austrian Science Fund (FWF, grant number I 3630-B25) to
JF. HH is supported by the China Scholarship Council (CSC scholarship). '
article_processing_charge: No
article_type: letter_note
author:
- first_name: Huibin
full_name: Han, Huibin
id: 31435098-F248-11E8-B48F-1D18A9856A87
last_name: Han
- first_name: Hana
full_name: Rakusova, Hana
id: 4CAAA450-78D2-11EA-8E57-B40A396E08BA
last_name: Rakusova
- first_name: Inge
full_name: Verstraeten, Inge
id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
last_name: Verstraeten
orcid: 0000-0001-7241-2328
- first_name: Yuzhou
full_name: Zhang, Yuzhou
id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
last_name: Zhang
orcid: 0000-0003-2627-6956
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Han H, Rakusova H, Verstraeten I, Zhang Y, Friml J. SCF TIR1/AFB auxin signaling
for bending termination during shoot gravitropism. Plant Physiology. 2020;183(5):37-40.
doi:10.1104/pp.20.00212
apa: Han, H., Rakusova, H., Verstraeten, I., Zhang, Y., & Friml, J. (2020).
SCF TIR1/AFB auxin signaling for bending termination during shoot gravitropism.
Plant Physiology. American Society of Plant Biologists. https://doi.org/10.1104/pp.20.00212
chicago: Han, Huibin, Hana Rakusova, Inge Verstraeten, Yuzhou Zhang, and Jiří Friml.
“SCF TIR1/AFB Auxin Signaling for Bending Termination during Shoot Gravitropism.”
Plant Physiology. American Society of Plant Biologists, 2020. https://doi.org/10.1104/pp.20.00212.
ieee: H. Han, H. Rakusova, I. Verstraeten, Y. Zhang, and J. Friml, “SCF TIR1/AFB
auxin signaling for bending termination during shoot gravitropism,” Plant Physiology,
vol. 183, no. 5. American Society of Plant Biologists, pp. 37–40, 2020.
ista: Han H, Rakusova H, Verstraeten I, Zhang Y, Friml J. 2020. SCF TIR1/AFB auxin
signaling for bending termination during shoot gravitropism. Plant Physiology.
183(5), 37–40.
mla: Han, Huibin, et al. “SCF TIR1/AFB Auxin Signaling for Bending Termination during
Shoot Gravitropism.” Plant Physiology, vol. 183, no. 5, American Society
of Plant Biologists, 2020, pp. 37–40, doi:10.1104/pp.20.00212.
short: H. Han, H. Rakusova, I. Verstraeten, Y. Zhang, J. Friml, Plant Physiology
183 (2020) 37–40.
date_created: 2020-04-06T10:06:40Z
date_published: 2020-05-08T00:00:00Z
date_updated: 2023-09-07T13:13:04Z
day: '08'
department:
- _id: JiFr
doi: 10.1104/pp.20.00212
ec_funded: 1
external_id:
isi:
- '000536641800018'
pmid:
- '32107280'
intvolume: ' 183'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1104/pp.20.00212
month: '05'
oa: 1
oa_version: Published Version
page: 37-40
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I03630
name: Molecular mechanisms of endocytic cargo recognition in plants
publication: Plant Physiology
publication_identifier:
eissn:
- 1532-2548
issn:
- 0032-0889
publication_status: published
publisher: American Society of Plant Biologists
quality_controlled: '1'
related_material:
record:
- id: '8589'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: SCF TIR1/AFB auxin signaling for bending termination during shoot gravitropism
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 183
year: '2020'
...
---
_id: '7646'
abstract:
- lang: eng
text: In plant cells, environmental stressors promote changes in connectivity between
the cortical ER and the PM. Although this process is tightly regulated in space
and time, the molecular signals and structural components mediating these changes
in inter-organelle communication are only starting to be characterized. In this
report, we confirm the presence of a putative tethering complex containing the
synaptotagmins 1 and 5 (SYT1 and SYT5) and the Ca2+ and lipid binding protein
1 (CLB1/SYT7). This complex is enriched at ER-PM contact sites (EPCS), have slow
responses to changes in extracellular Ca2+, and display severe cytoskeleton-dependent
rearrangements in response to the trivalent lanthanum (La3+) and gadolinium (Gd3+)
rare earth elements (REEs). Although REEs are generally used as non-selective
cation channel blockers at the PM, here we show that the slow internalization
of REEs into the cytosol underlies the activation of the Ca2+/Calmodulin intracellular
signaling, the accumulation of phosphatidylinositol-4-phosphate (PI4P) at the
PM, and the cytoskeleton-dependent rearrangement of the SYT1/SYT5 EPCS complexes.
We propose that the observed EPCS rearrangements act as a slow adaptive response
to sustained stress conditions, and that this process involves the accumulation
of stress-specific phosphoinositides species at the PM.
article_processing_charge: No
article_type: original
author:
- first_name: E
full_name: Lee, E
last_name: Lee
- first_name: B
full_name: Vila Nova Santana, B
last_name: Vila Nova Santana
- first_name: E
full_name: Samuels, E
last_name: Samuels
- first_name: F
full_name: Benitez-Fuente, F
last_name: Benitez-Fuente
- first_name: E
full_name: Corsi, E
last_name: Corsi
- first_name: MA
full_name: Botella, MA
last_name: Botella
- first_name: J
full_name: Perez-Sancho, J
last_name: Perez-Sancho
- first_name: S
full_name: Vanneste, S
last_name: Vanneste
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: A
full_name: Macho, A
last_name: Macho
- first_name: A
full_name: Alves Azevedo, A
last_name: Alves Azevedo
- first_name: A
full_name: Rosado, A
last_name: Rosado
citation:
ama: Lee E, Vila Nova Santana B, Samuels E, et al. Rare earth elements induce cytoskeleton-dependent
and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in
Arabidopsis. Journal of Experimental Botany. 2020;71(14):3986–3998. doi:10.1093/jxb/eraa138
apa: Lee, E., Vila Nova Santana, B., Samuels, E., Benitez-Fuente, F., Corsi, E.,
Botella, M., … Rosado, A. (2020). Rare earth elements induce cytoskeleton-dependent
and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in
Arabidopsis. Journal of Experimental Botany. Oxford University Press. https://doi.org/10.1093/jxb/eraa138
chicago: Lee, E, B Vila Nova Santana, E Samuels, F Benitez-Fuente, E Corsi, MA Botella,
J Perez-Sancho, et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and
PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.”
Journal of Experimental Botany. Oxford University Press, 2020. https://doi.org/10.1093/jxb/eraa138.
ieee: E. Lee et al., “Rare earth elements induce cytoskeleton-dependent and
PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis,”
Journal of Experimental Botany, vol. 71, no. 14. Oxford University Press,
pp. 3986–3998, 2020.
ista: Lee E, Vila Nova Santana B, Samuels E, Benitez-Fuente F, Corsi E, Botella
M, Perez-Sancho J, Vanneste S, Friml J, Macho A, Alves Azevedo A, Rosado A. 2020.
Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement
of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. Journal of Experimental
Botany. 71(14), 3986–3998.
mla: Lee, E., et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated
Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” Journal
of Experimental Botany, vol. 71, no. 14, Oxford University Press, 2020, pp.
3986–3998, doi:10.1093/jxb/eraa138.
short: E. Lee, B. Vila Nova Santana, E. Samuels, F. Benitez-Fuente, E. Corsi, M.
Botella, J. Perez-Sancho, S. Vanneste, J. Friml, A. Macho, A. Alves Azevedo, A.
Rosado, Journal of Experimental Botany 71 (2020) 3986–3998.
date_created: 2020-04-06T10:57:08Z
date_published: 2020-07-06T00:00:00Z
date_updated: 2023-08-18T10:27:52Z
day: '06'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1093/jxb/eraa138
external_id:
isi:
- '000553125400007'
pmid:
- '32179893'
file:
- access_level: open_access
checksum: b06aaaa93dc41896da805fe4b75cf3a1
content_type: application/pdf
creator: dernst
date_created: 2020-10-06T07:41:35Z
date_updated: 2020-10-06T07:41:35Z
file_id: '8613'
file_name: 2020_JourExperimBotany_Lee.pdf
file_size: 1916031
relation: main_file
success: 1
file_date_updated: 2020-10-06T07:41:35Z
has_accepted_license: '1'
intvolume: ' 71'
isi: 1
issue: '14'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 3986–3998
pmid: 1
publication: Journal of Experimental Botany
publication_identifier:
eissn:
- 1460-2431
issn:
- 0022-0957
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement
of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 71
year: '2020'
...