---
_id: '7236'
abstract:
- lang: eng
text: The biotic interactions hypothesis posits that biotic interactions are more
important drivers of adaptation closer to the equator, evidenced by “stronger”
contemporary interactions (e.g. greater interaction rates) and/or patterns of
trait evolution consistent with a history of stronger interactions. Support for
the hypothesis is mixed, but few studies span tropical and temperate regions while
experimentally controlling for evolutionary history. Here, we integrate field
observations and common garden experiments to quantify the relative importance
of pollination and herbivory in a pair of tropical‐temperate congeneric perennial
herbs. Phytolacca rivinoides and P. americana are pioneer species native to the
Neotropics and the eastern USA, respectively. We compared plant‐pollinator and
plant‐herbivore interactions between three tropical populations of P. rivinoides
from Costa Rica and three temperate populations of P. americana from its northern
range edge in Michigan and Ohio. For some metrics of interaction importance, we
also included three subtropical populations of P. americana from its southern
range edge in Florida. This approach confounds species and region but allows us,
uniquely, to measure complementary proxies of interaction importance across a
tropical‐temperate range in one system. To test the prediction that lower‐latitude
plants are more reliant on insect pollinators, we quantified floral display and
reward, insect visitation rates, and self‐pollination ability (autogamy). To test
the prediction that lower‐latitude plants experience more herbivore pressure,
we quantified herbivory rates, herbivore abundance, and leaf palatability. We
found evidence supporting the biotic interactions hypothesis for most comparisons
between P. rivinoides and north‐temperate P. americana (floral display, insect
visitation, autogamy, herbivory, herbivore abundance, and young‐leaf palatability).
Results for subtropical P. americana populations, however, were typically not
intermediate between P. rivinoides and north‐temperate P. americana, as would
be predicted by a linear latitudinal gradient in interaction importance. Subtropical
young‐leaf palatability was intermediate, but subtropical mature leaves were the
least palatable, and pollination‐related traits did not differ between temperate
and subtropical regions. These nonlinear patterns of interaction importance suggest
future work to relate interaction importance to climatic or biotic thresholds.
In sum, we found that the biotic interactions hypothesis was more consistently
supported at the larger spatial scale of our study.
article_number: e01397
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Carina
full_name: Baskett, Carina
id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
last_name: Baskett
orcid: 0000-0002-7354-8574
- first_name: Lucy
full_name: Schroeder, Lucy
last_name: Schroeder
- first_name: Marjorie G.
full_name: Weber, Marjorie G.
last_name: Weber
- first_name: Douglas W.
full_name: Schemske, Douglas W.
last_name: Schemske
citation:
ama: Baskett C, Schroeder L, Weber MG, Schemske DW. Multiple metrics of latitudinal
patterns in insect pollination and herbivory for a tropical‐temperate congener
pair. Ecological Monographs. 2020;90(1). doi:10.1002/ecm.1397
apa: Baskett, C., Schroeder, L., Weber, M. G., & Schemske, D. W. (2020). Multiple
metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate
congener pair. Ecological Monographs. Wiley. https://doi.org/10.1002/ecm.1397
chicago: Baskett, Carina, Lucy Schroeder, Marjorie G. Weber, and Douglas W. Schemske.
“Multiple Metrics of Latitudinal Patterns in Insect Pollination and Herbivory
for a Tropical‐temperate Congener Pair.” Ecological Monographs. Wiley,
2020. https://doi.org/10.1002/ecm.1397.
ieee: C. Baskett, L. Schroeder, M. G. Weber, and D. W. Schemske, “Multiple metrics
of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate
congener pair,” Ecological Monographs, vol. 90, no. 1. Wiley, 2020.
ista: Baskett C, Schroeder L, Weber MG, Schemske DW. 2020. Multiple metrics of latitudinal
patterns in insect pollination and herbivory for a tropical‐temperate congener
pair. Ecological Monographs. 90(1), e01397.
mla: Baskett, Carina, et al. “Multiple Metrics of Latitudinal Patterns in Insect
Pollination and Herbivory for a Tropical‐temperate Congener Pair.” Ecological
Monographs, vol. 90, no. 1, e01397, Wiley, 2020, doi:10.1002/ecm.1397.
short: C. Baskett, L. Schroeder, M.G. Weber, D.W. Schemske, Ecological Monographs
90 (2020).
date_created: 2020-01-07T12:47:07Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2023-09-05T15:43:19Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1002/ecm.1397
ec_funded: 1
external_id:
isi:
- '000508511600001'
file:
- access_level: open_access
checksum: ab8130c6e68101f5a091d05324c36f08
content_type: application/pdf
creator: dernst
date_created: 2020-02-10T08:18:14Z
date_updated: 2020-07-14T12:47:54Z
file_id: '7469'
file_name: 2020_EcologMono_Baskett.pdf
file_size: 537941
relation: main_file
file_date_updated: 2020-07-14T12:47:54Z
has_accepted_license: '1'
intvolume: ' 90'
isi: 1
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Ecological Monographs
publication_identifier:
eissn:
- 1557-7015
issn:
- 0012-9615
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multiple metrics of latitudinal patterns in insect pollination and herbivory
for a tropical‐temperate congener pair
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 90
year: '2020'
...
---
_id: '7253'
abstract:
- lang: eng
text: The cyclin-dependent kinase inhibitor p57KIP2 is encoded by the imprinted
Cdkn1c locus, exhibits maternal expression, and is essential for cerebral cortex
development. How Cdkn1c regulates corticogenesis is however not clear. To this
end we employ Mosaic Analysis with Double Markers (MADM) technology to genetically
dissect Cdkn1c gene function in corticogenesis at single cell resolution. We find
that the previously described growth-inhibitory Cdkn1c function is a non-cell-autonomous
one, acting on the whole organism. In contrast we reveal a growth-promoting cell-autonomous
Cdkn1c function which at the mechanistic level mediates radial glial progenitor
cell and nascent projection neuron survival. Strikingly, the growth-promoting
function of Cdkn1c is highly dosage sensitive but not subject to genomic imprinting.
Collectively, our results suggest that the Cdkn1c locus regulates cortical development
through distinct cell-autonomous and non-cell-autonomous mechanisms. More generally,
our study highlights the importance to probe the relative contributions of cell
intrinsic gene function and tissue-wide mechanisms to the overall phenotype.
acknowledged_ssus:
- _id: PreCl
article_number: '195'
article_processing_charge: No
article_type: original
author:
- first_name: Susanne
full_name: Laukoter, Susanne
id: 2D6B7A9A-F248-11E8-B48F-1D18A9856A87
last_name: Laukoter
orcid: 0000-0002-7903-3010
- first_name: Robert J
full_name: Beattie, Robert J
id: 2E26DF60-F248-11E8-B48F-1D18A9856A87
last_name: Beattie
orcid: 0000-0002-8483-8753
- first_name: Florian
full_name: Pauler, Florian
id: 48EA0138-F248-11E8-B48F-1D18A9856A87
last_name: Pauler
orcid: 0000-0002-7462-0048
- first_name: Nicole
full_name: Amberg, Nicole
id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
last_name: Amberg
orcid: 0000-0002-3183-8207
- first_name: Keiichi I.
full_name: Nakayama, Keiichi I.
last_name: Nakayama
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
citation:
ama: Laukoter S, Beattie RJ, Pauler F, Amberg N, Nakayama KI, Hippenmeyer S. Imprinted
Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex
development. Nature Communications. 2020;11. doi:10.1038/s41467-019-14077-2
apa: Laukoter, S., Beattie, R. J., Pauler, F., Amberg, N., Nakayama, K. I., &
Hippenmeyer, S. (2020). Imprinted Cdkn1c genomic locus cell-autonomously promotes
cell survival in cerebral cortex development. Nature Communications. Springer
Nature. https://doi.org/10.1038/s41467-019-14077-2
chicago: Laukoter, Susanne, Robert J Beattie, Florian Pauler, Nicole Amberg, Keiichi
I. Nakayama, and Simon Hippenmeyer. “Imprinted Cdkn1c Genomic Locus Cell-Autonomously
Promotes Cell Survival in Cerebral Cortex Development.” Nature Communications.
Springer Nature, 2020. https://doi.org/10.1038/s41467-019-14077-2.
ieee: S. Laukoter, R. J. Beattie, F. Pauler, N. Amberg, K. I. Nakayama, and S. Hippenmeyer,
“Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral
cortex development,” Nature Communications, vol. 11. Springer Nature, 2020.
ista: Laukoter S, Beattie RJ, Pauler F, Amberg N, Nakayama KI, Hippenmeyer S. 2020.
Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral
cortex development. Nature Communications. 11, 195.
mla: Laukoter, Susanne, et al. “Imprinted Cdkn1c Genomic Locus Cell-Autonomously
Promotes Cell Survival in Cerebral Cortex Development.” Nature Communications,
vol. 11, 195, Springer Nature, 2020, doi:10.1038/s41467-019-14077-2.
short: S. Laukoter, R.J. Beattie, F. Pauler, N. Amberg, K.I. Nakayama, S. Hippenmeyer,
Nature Communications 11 (2020).
date_created: 2020-01-11T10:42:48Z
date_published: 2020-01-10T00:00:00Z
date_updated: 2023-08-17T14:23:41Z
day: '10'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1038/s41467-019-14077-2
ec_funded: 1
external_id:
isi:
- '000551459000005'
file:
- access_level: open_access
checksum: ebf1ed522f4e0be8d94c939c1806a709
content_type: application/pdf
creator: dernst
date_created: 2020-01-13T07:42:31Z
date_updated: 2020-07-14T12:47:54Z
file_id: '7261'
file_name: 2020_NatureComm_Laukoter.pdf
file_size: 8063333
relation: main_file
file_date_updated: 2020-07-14T12:47:54Z
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 268F8446-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: T0101031
name: Role of Eed in neural stem cell lineage progression
- _id: 264E56E2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: M02416
name: Molecular Mechanisms Regulating Gliogenesis in the Cerebral Cortex
- _id: 260018B0-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '725780'
name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
- _id: 25D92700-B435-11E9-9278-68D0E5697425
grant_number: LS13-002
name: Mapping Cell-Type Specificity of the Genomic Imprintome in the Brain
publication: Nature Communications
publication_identifier:
issn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/new-function-for-potential-tumour-suppressor-in-brain-development/
scopus_import: '1'
status: public
title: Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in
cerebral cortex development
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2020'
...
---
_id: '7258'
abstract:
- lang: eng
text: Many flows encountered in nature and applications are characterized by a chaotic
motion known as turbulence. Turbulent flows generate intense friction with pipe
walls and are responsible for considerable amounts of energy losses at world scale.
The nature of turbulent friction and techniques aimed at reducing it have been
subject of extensive research over the last century, but no definite answer has
been found yet. In this thesis we show that in pipes at moderate turbulent Reynolds
numbers friction is better described by the power law first introduced by Blasius
and not by the Prandtl–von Kármán formula. At higher Reynolds numbers, large scale
motions gradually become more important in the flow and can be related to the
change in scaling of friction. Next, we present a series of new techniques that
can relaminarize turbulence by suppressing a key mechanism that regenerates it
at walls, the lift–up effect. In addition, we investigate the process of turbulence
decay in several experiments and discuss the drag reduction potential. Finally,
we examine the behavior of friction under pulsating conditions inspired by the
human heart cycle and we show that under such circumstances turbulent friction
can be reduced to produce energy savings.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Davide
full_name: Scarselli, Davide
id: 40315C30-F248-11E8-B48F-1D18A9856A87
last_name: Scarselli
orcid: 0000-0001-5227-4271
citation:
ama: Scarselli D. New approaches to reduce friction in turbulent pipe flow. 2020.
doi:10.15479/AT:ISTA:7258
apa: Scarselli, D. (2020). New approaches to reduce friction in turbulent pipe
flow. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:7258
chicago: Scarselli, Davide. “New Approaches to Reduce Friction in Turbulent Pipe
Flow.” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:7258.
ieee: D. Scarselli, “New approaches to reduce friction in turbulent pipe flow,”
Institute of Science and Technology Austria, 2020.
ista: Scarselli D. 2020. New approaches to reduce friction in turbulent pipe flow.
Institute of Science and Technology Austria.
mla: Scarselli, Davide. New Approaches to Reduce Friction in Turbulent Pipe Flow.
Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:7258.
short: D. Scarselli, New Approaches to Reduce Friction in Turbulent Pipe Flow, Institute
of Science and Technology Austria, 2020.
date_created: 2020-01-12T16:07:26Z
date_published: 2020-01-13T00:00:00Z
date_updated: 2023-09-15T12:20:08Z
day: '13'
ddc:
- '532'
degree_awarded: PhD
department:
- _id: BjHo
doi: 10.15479/AT:ISTA:7258
ec_funded: 1
file:
- access_level: closed
checksum: 4df1ab24e9896635106adde5a54615bf
content_type: application/zip
creator: dscarsel
date_created: 2020-01-12T15:57:14Z
date_updated: 2021-01-13T23:30:05Z
embargo_to: open_access
file_id: '7259'
file_name: 2020_Scarselli_Thesis.zip
file_size: 26640830
relation: source_file
- access_level: open_access
checksum: 48659ab98e3414293c7a721385c2fd1c
content_type: application/pdf
creator: dscarsel
date_created: 2020-01-12T15:56:14Z
date_updated: 2021-01-13T23:30:05Z
embargo: 2021-01-12
file_id: '7260'
file_name: 2020_Scarselli_Thesis.pdf
file_size: 8515844
relation: main_file
file_date_updated: 2021-01-13T23:30:05Z
has_accepted_license: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: None
page: '174'
project:
- _id: 25152F3A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '306589'
name: Decoding the complexity of turbulence at its origin
- _id: 25104D44-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '737549'
name: Eliminating turbulence in oil pipelines
- _id: 25136C54-B435-11E9-9278-68D0E5697425
grant_number: HO 4393/1-2
name: Experimental studies of the turbulence transition and transport processes
in turbulent Taylor-Couette currents
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '6228'
relation: part_of_dissertation
status: public
- id: '6486'
relation: part_of_dissertation
status: public
- id: '461'
relation: part_of_dissertation
status: public
- id: '422'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Björn
full_name: Hof, Björn
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
title: New approaches to reduce friction in turbulent pipe flow
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '7262'
abstract:
- lang: eng
text: Advances in shape-morphing materials, such as hydrogels, shape-memory polymers
and light-responsive polymers have enabled prescribing self-directed deformations
of initially flat geometries. However, most proposed solutions evolve towards
a target geometry without considering time-dependent actuation paths. To achieve
more complex geometries and avoid self-collisions, it is critical to encode a
spatial and temporal shape evolution within the initially flat shell. Recent realizations
of time-dependent morphing are limited to the actuation of few, discrete hinges
and cannot form doubly curved surfaces. Here, we demonstrate a method for encoding
temporal shape evolution in architected shells that assume complex shapes and
doubly curved geometries. The shells are non-periodic tessellations of pre-stressed
contractile unit cells that soften in water at rates prescribed locally by mesostructure
geometry. The ensuing midplane contraction is coupled to the formation of encoded
curvatures. We propose an inverse design tool based on a data-driven model for
unit cells’ temporal responses.
article_number: '237'
article_processing_charge: No
article_type: original
author:
- first_name: Ruslan
full_name: Guseinov, Ruslan
id: 3AB45EE2-F248-11E8-B48F-1D18A9856A87
last_name: Guseinov
orcid: 0000-0001-9819-5077
- first_name: Connor
full_name: McMahan, Connor
last_name: McMahan
- first_name: Jesus
full_name: Perez Rodriguez, Jesus
id: 2DC83906-F248-11E8-B48F-1D18A9856A87
last_name: Perez Rodriguez
- first_name: Chiara
full_name: Daraio, Chiara
last_name: Daraio
- first_name: Bernd
full_name: Bickel, Bernd
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
citation:
ama: Guseinov R, McMahan C, Perez Rodriguez J, Daraio C, Bickel B. Programming temporal
morphing of self-actuated shells. Nature Communications. 2020;11. doi:10.1038/s41467-019-14015-2
apa: Guseinov, R., McMahan, C., Perez Rodriguez, J., Daraio, C., & Bickel, B.
(2020). Programming temporal morphing of self-actuated shells. Nature Communications.
Springer Nature. https://doi.org/10.1038/s41467-019-14015-2
chicago: Guseinov, Ruslan, Connor McMahan, Jesus Perez Rodriguez, Chiara Daraio,
and Bernd Bickel. “Programming Temporal Morphing of Self-Actuated Shells.” Nature
Communications. Springer Nature, 2020. https://doi.org/10.1038/s41467-019-14015-2.
ieee: R. Guseinov, C. McMahan, J. Perez Rodriguez, C. Daraio, and B. Bickel, “Programming
temporal morphing of self-actuated shells,” Nature Communications, vol.
11. Springer Nature, 2020.
ista: Guseinov R, McMahan C, Perez Rodriguez J, Daraio C, Bickel B. 2020. Programming
temporal morphing of self-actuated shells. Nature Communications. 11, 237.
mla: Guseinov, Ruslan, et al. “Programming Temporal Morphing of Self-Actuated Shells.”
Nature Communications, vol. 11, 237, Springer Nature, 2020, doi:10.1038/s41467-019-14015-2.
short: R. Guseinov, C. McMahan, J. Perez Rodriguez, C. Daraio, B. Bickel, Nature
Communications 11 (2020).
date_created: 2020-01-13T16:54:26Z
date_published: 2020-01-13T00:00:00Z
date_updated: 2024-02-21T12:45:02Z
day: '13'
ddc:
- '000'
department:
- _id: BeBi
doi: 10.1038/s41467-019-14015-2
ec_funded: 1
external_id:
isi:
- '000511916800015'
file:
- access_level: open_access
checksum: 7db23fef2f4cda712f17f1004116ddff
content_type: application/pdf
creator: rguseino
date_created: 2020-01-15T14:35:34Z
date_updated: 2020-07-14T12:47:55Z
file_id: '7336'
file_name: 2020_NatureComm_Guseinov.pdf
file_size: 1315270
relation: main_file
file_date_updated: 2020-07-14T12:47:55Z
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
keyword:
- Design
- Synthesis and processing
- Mechanical engineering
- Polymers
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '715767'
name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
Modeling'
publication: Nature Communications
publication_identifier:
issn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/geometry-meets-time/
record:
- id: '8366'
relation: dissertation_contains
status: public
- id: '7154'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Programming temporal morphing of self-actuated shells
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2020'
...
---
_id: '7272'
abstract:
- lang: eng
text: "Many systems rely on optimistic concurrent search trees for multi-core scalability.
In principle, optimistic trees have a simple performance story: searches are read-only
and so run in parallel, with writes to shared memory occurring only when modifying
the data structure. However, this paper shows that in practice, obtaining the
full performance benefits of optimistic search trees is not so simple.\r\n\r\nWe
focus on optimistic binary search trees (BSTs) and perform a detailed performance
analysis of 10 state-of-the-art BSTs on large scale x86-64 hardware, using both
microbenchmarks and an in-memory database system. We find and explain significant
unexpected performance differences between BSTs with similar tree structure and
search implementations, which we trace to subtle performance-degrading interactions
of BSTs with systems software and hardware subsystems. We further derive a prescriptive
approach to avoid this performance degradation, as well as algorithmic insights
on optimistic BST design. Our work underlines the gap between the theory and practice
of multi-core performance, and calls for further research to help bridge this
gap."
article_processing_charge: No
author:
- first_name: Maya
full_name: Arbel-Raviv, Maya
last_name: Arbel-Raviv
- first_name: Trevor A
full_name: Brown, Trevor A
id: 3569F0A0-F248-11E8-B48F-1D18A9856A87
last_name: Brown
- first_name: Adam
full_name: Morrison, Adam
last_name: Morrison
citation:
ama: 'Arbel-Raviv M, Brown TA, Morrison A. Getting to the root of concurrent binary
search tree performance. In: Proceedings of the 2018 USENIX Annual Technical
Conference. USENIX Association; 2020:295-306.'
apa: 'Arbel-Raviv, M., Brown, T. A., & Morrison, A. (2020). Getting to the root
of concurrent binary search tree performance. In Proceedings of the 2018 USENIX
Annual Technical Conference (pp. 295–306). Boston, MA, United States: USENIX
Association.'
chicago: Arbel-Raviv, Maya, Trevor A Brown, and Adam Morrison. “Getting to the Root
of Concurrent Binary Search Tree Performance.” In Proceedings of the 2018 USENIX
Annual Technical Conference, 295–306. USENIX Association, 2020.
ieee: M. Arbel-Raviv, T. A. Brown, and A. Morrison, “Getting to the root of concurrent
binary search tree performance,” in Proceedings of the 2018 USENIX Annual Technical
Conference, Boston, MA, United States, 2020, pp. 295–306.
ista: 'Arbel-Raviv M, Brown TA, Morrison A. 2020. Getting to the root of concurrent
binary search tree performance. Proceedings of the 2018 USENIX Annual Technical
Conference. USENIX: Annual Technical Conference, 295–306.'
mla: Arbel-Raviv, Maya, et al. “Getting to the Root of Concurrent Binary Search
Tree Performance.” Proceedings of the 2018 USENIX Annual Technical Conference,
USENIX Association, 2020, pp. 295–306.
short: M. Arbel-Raviv, T.A. Brown, A. Morrison, in:, Proceedings of the 2018 USENIX
Annual Technical Conference, USENIX Association, 2020, pp. 295–306.
conference:
end_date: 2018-07-13
location: Boston, MA, United States
name: 'USENIX: Annual Technical Conference'
start_date: 2018-07-11
date_created: 2020-01-14T07:27:08Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2021-01-11T15:25:48Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.usenix.org/system/files/conference/atc18/atc18-arbel-raviv.pdf
month: '01'
oa: 1
oa_version: Published Version
page: 295-306
project:
- _id: 26450934-B435-11E9-9278-68D0E5697425
name: NSERC Postdoctoral fellowship
publication: Proceedings of the 2018 USENIX Annual Technical Conference
publication_identifier:
isbn:
- '9781939133021'
publication_status: published
publisher: USENIX Association
quality_controlled: '1'
scopus_import: '1'
status: public
title: Getting to the root of concurrent binary search tree performance
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7339'
abstract:
- lang: eng
text: Cytoskeletal filaments such as microtubules (MTs) and filamentous actin (F-actin)
dynamically support cell structure and functions. In central presynaptic terminals,
F-actin is expressed along the release edge and reportedly plays diverse functional
roles, but whether axonal MTs extend deep into terminals and play any physiological
role remains controversial. At the calyx of Held in rats of either sex, confocal
and high-resolution microscopy revealed that MTs enter deep into presynaptic terminal
swellings and partially colocalize with a subset of synaptic vesicles (SVs). Electrophysiological
analysis demonstrated that depolymerization of MTs specifically prolonged the
slow-recovery time component of EPSCs from short-term depression induced by a
train of high-frequency stimulation, whereas depolymerization of F-actin specifically
prolonged the fast-recovery component. In simultaneous presynaptic and postsynaptic
action potential recordings, depolymerization of MTs or F-actin significantly
impaired the fidelity of high-frequency neurotransmission. We conclude that MTs
and F-actin differentially contribute to slow and fast SV replenishment, thereby
maintaining high-frequency neurotransmission.
article_processing_charge: No
article_type: original
author:
- first_name: Lashmi
full_name: Piriya Ananda Babu, Lashmi
last_name: Piriya Ananda Babu
- first_name: Han Ying
full_name: Wang, Han Ying
last_name: Wang
- first_name: Kohgaku
full_name: Eguchi, Kohgaku
id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
last_name: Eguchi
orcid: 0000-0002-6170-2546
- first_name: Laurent
full_name: Guillaud, Laurent
last_name: Guillaud
- first_name: Tomoyuki
full_name: Takahashi, Tomoyuki
last_name: Takahashi
citation:
ama: Piriya Ananda Babu L, Wang HY, Eguchi K, Guillaud L, Takahashi T. Microtubule
and actin differentially regulate synaptic vesicle cycling to maintain high-frequency
neurotransmission. Journal of neuroscience. 2020;40(1):131-142. doi:10.1523/JNEUROSCI.1571-19.2019
apa: Piriya Ananda Babu, L., Wang, H. Y., Eguchi, K., Guillaud, L., & Takahashi,
T. (2020). Microtubule and actin differentially regulate synaptic vesicle cycling
to maintain high-frequency neurotransmission. Journal of Neuroscience.
Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.1571-19.2019
chicago: Piriya Ananda Babu, Lashmi, Han Ying Wang, Kohgaku Eguchi, Laurent Guillaud,
and Tomoyuki Takahashi. “Microtubule and Actin Differentially Regulate Synaptic
Vesicle Cycling to Maintain High-Frequency Neurotransmission.” Journal of Neuroscience.
Society for Neuroscience, 2020. https://doi.org/10.1523/JNEUROSCI.1571-19.2019.
ieee: L. Piriya Ananda Babu, H. Y. Wang, K. Eguchi, L. Guillaud, and T. Takahashi,
“Microtubule and actin differentially regulate synaptic vesicle cycling to maintain
high-frequency neurotransmission,” Journal of neuroscience, vol. 40, no.
1. Society for Neuroscience, pp. 131–142, 2020.
ista: Piriya Ananda Babu L, Wang HY, Eguchi K, Guillaud L, Takahashi T. 2020. Microtubule
and actin differentially regulate synaptic vesicle cycling to maintain high-frequency
neurotransmission. Journal of neuroscience. 40(1), 131–142.
mla: Piriya Ananda Babu, Lashmi, et al. “Microtubule and Actin Differentially Regulate
Synaptic Vesicle Cycling to Maintain High-Frequency Neurotransmission.” Journal
of Neuroscience, vol. 40, no. 1, Society for Neuroscience, 2020, pp. 131–42,
doi:10.1523/JNEUROSCI.1571-19.2019.
short: L. Piriya Ananda Babu, H.Y. Wang, K. Eguchi, L. Guillaud, T. Takahashi, Journal
of Neuroscience 40 (2020) 131–142.
date_created: 2020-01-19T23:00:38Z
date_published: 2020-01-02T00:00:00Z
date_updated: 2023-08-17T14:25:23Z
day: '02'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1523/JNEUROSCI.1571-19.2019
external_id:
isi:
- '000505167600013'
pmid:
- '31767677'
file:
- access_level: open_access
checksum: 92f5e8a47f454fc131fb94cd7f106e60
content_type: application/pdf
creator: dernst
date_created: 2020-01-20T14:44:10Z
date_updated: 2020-07-14T12:47:56Z
file_id: '7345'
file_name: 2020_JourNeuroscience_Piriya.pdf
file_size: 4460781
relation: main_file
file_date_updated: 2020-07-14T12:47:56Z
has_accepted_license: '1'
intvolume: ' 40'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 131-142
pmid: 1
publication: Journal of neuroscience
publication_identifier:
eissn:
- '15292401'
publication_status: published
publisher: Society for Neuroscience
quality_controlled: '1'
scopus_import: '1'
status: public
title: Microtubule and actin differentially regulate synaptic vesicle cycling to maintain
high-frequency neurotransmission
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 40
year: '2020'
...
---
_id: '7343'
abstract:
- lang: eng
text: Coinfections with multiple pathogens can result in complex within‐host dynamics
affecting virulence and transmission. While multiple infections are intensively
studied in solitary hosts, it is so far unresolved how social host interactions
interfere with pathogen competition, and if this depends on coinfection diversity.
We studied how the collective disease defences of ants – their social immunity
– influence pathogen competition in coinfections of same or different fungal pathogen
species. Social immunity reduced virulence for all pathogen combinations, but
interfered with spore production only in different‐species coinfections. Here,
it decreased overall pathogen sporulation success while increasing co‐sporulation
on individual cadavers and maintaining a higher pathogen diversity at the community
level. Mathematical modelling revealed that host sanitary care alone can modulate
competitive outcomes between pathogens, giving advantage to fast‐germinating,
thus less grooming‐sensitive ones. Host social interactions can hence modulate
infection dynamics in coinfected group members, thereby altering pathogen communities
at the host level and population level.
acknowledged_ssus:
- _id: LifeSc
acknowledgement: "We thank Bernhardt Steinwender and Jorgen Eilenberg for the fungal
strains, Xavier Espadaler, Mireia Diaz, Christiane Wanke, Lumi Viljakainen and the
Social Immunity Team at IST Austria, for help with ant collection, and Wanda Gorecka
and Gertraud Stift of the IST Austria Life Science Facility for technical support.
We are thankful to Dieter Ebert for input at all stages of the project, Roger Mundry
for statistical advice, Hinrich Schulenburg, Paul Schmid-Hempel, Yuko\r\nUlrich
and Joachim Kurtz for project discussion, Bor Kavcic for advice on growth curves,
Marcus Roper for advice on modelling work and comments on the manuscript, as well
as Marjon de Vos, Weini Huang and the Social Immunity Team for comments on the manuscript.\r\nThis
study was funded by the German Research Foundation (DFG) within the Priority Programme
1399 Host-parasite Coevolution (CR 118/3 to S.C.) and the People Programme\r\n(Marie
Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013)
under REA grant agreement no 291734 (ISTFELLOW to B.M.). "
article_processing_charge: Yes (via OA deal)
article_type: letter_note
author:
- first_name: Barbara
full_name: Milutinovic, Barbara
id: 2CDC32B8-F248-11E8-B48F-1D18A9856A87
last_name: Milutinovic
orcid: 0000-0002-8214-4758
- first_name: Miriam
full_name: Stock, Miriam
id: 42462816-F248-11E8-B48F-1D18A9856A87
last_name: Stock
- first_name: Anna V
full_name: Grasse, Anna V
id: 406F989C-F248-11E8-B48F-1D18A9856A87
last_name: Grasse
- first_name: Elisabeth
full_name: Naderlinger, Elisabeth
id: 31757262-F248-11E8-B48F-1D18A9856A87
last_name: Naderlinger
- first_name: Christian
full_name: Hilbe, Christian
id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
last_name: Hilbe
orcid: 0000-0001-5116-955X
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. Social
immunity modulates competition between coinfecting pathogens. Ecology Letters.
2020;23(3):565-574. doi:10.1111/ele.13458
apa: Milutinovic, B., Stock, M., Grasse, A. V., Naderlinger, E., Hilbe, C., &
Cremer, S. (2020). Social immunity modulates competition between coinfecting pathogens.
Ecology Letters. Wiley. https://doi.org/10.1111/ele.13458
chicago: Milutinovic, Barbara, Miriam Stock, Anna V Grasse, Elisabeth Naderlinger,
Christian Hilbe, and Sylvia Cremer. “Social Immunity Modulates Competition between
Coinfecting Pathogens.” Ecology Letters. Wiley, 2020. https://doi.org/10.1111/ele.13458.
ieee: B. Milutinovic, M. Stock, A. V. Grasse, E. Naderlinger, C. Hilbe, and S. Cremer,
“Social immunity modulates competition between coinfecting pathogens,” Ecology
Letters, vol. 23, no. 3. Wiley, pp. 565–574, 2020.
ista: Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. 2020.
Social immunity modulates competition between coinfecting pathogens. Ecology Letters.
23(3), 565–574.
mla: Milutinovic, Barbara, et al. “Social Immunity Modulates Competition between
Coinfecting Pathogens.” Ecology Letters, vol. 23, no. 3, Wiley, 2020, pp.
565–74, doi:10.1111/ele.13458.
short: B. Milutinovic, M. Stock, A.V. Grasse, E. Naderlinger, C. Hilbe, S. Cremer,
Ecology Letters 23 (2020) 565–574.
date_created: 2020-01-20T13:32:12Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2023-09-05T16:04:49Z
day: '01'
ddc:
- '570'
department:
- _id: SyCr
- _id: KrCh
doi: 10.1111/ele.13458
ec_funded: 1
external_id:
isi:
- '000507515900001'
file:
- access_level: open_access
checksum: 0cd8be386fa219db02845b7c3991ce04
content_type: application/pdf
creator: dernst
date_created: 2020-11-19T11:27:10Z
date_updated: 2020-11-19T11:27:10Z
file_id: '8776'
file_name: 2020_EcologyLetters_Milutinovic.pdf
file_size: 561749
relation: main_file
success: 1
file_date_updated: 2020-11-19T11:27:10Z
has_accepted_license: '1'
intvolume: ' 23'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 565-574
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
- _id: 25DAF0B2-B435-11E9-9278-68D0E5697425
grant_number: CR-118/3-1
name: Host-Parasite Coevolution
publication: Ecology Letters
publication_identifier:
eissn:
- 1461-0248
issn:
- 1461-023X
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/social-ants-shapes-disease-outcome/
record:
- id: '13060'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Social immunity modulates competition between coinfecting pathogens
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 23
year: '2020'
...
---
_id: '7346'
abstract:
- lang: eng
text: 'The Price of Anarchy (PoA) is a well-established game-theoretic concept to
shed light on coordination issues arising in open distributed systems. Leaving
agents to selfishly optimize comes with the risk of ending up in sub-optimal states
(in terms of performance and/or costs), compared to a centralized system design.
However, the PoA relies on strong assumptions about agents'' rationality (e.g.,
resources and information) and interactions, whereas in many distributed systems
agents interact locally with bounded resources. They do so repeatedly over time
(in contrast to "one-shot games"), and their strategies may evolve. Using a more
realistic evolutionary game model, this paper introduces a realized evolutionary
Price of Anarchy (ePoA). The ePoA allows an exploration of equilibrium selection
in dynamic distributed systems with multiple equilibria, based on local interactions
of simple memoryless agents. Considering a fundamental game related to virus propagation
on networks, we present analytical bounds on the ePoA in basic network topologies
and for different strategy update dynamics. In particular, deriving stationary
distributions of the stochastic evolutionary process, we find that the Nash equilibria
are not always the most abundant states, and that different processes can feature
significant off-equilibrium behavior, leading to a significantly higher ePoA compared
to the PoA studied traditionally in the literature. '
alternative_title:
- LIPIcs
article_number: '21'
article_processing_charge: No
arxiv: 1
author:
- first_name: Laura
full_name: Schmid, Laura
id: 38B437DE-F248-11E8-B48F-1D18A9856A87
last_name: Schmid
orcid: 0000-0002-6978-7329
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Stefan
full_name: Schmid, Stefan
last_name: Schmid
citation:
ama: 'Schmid L, Chatterjee K, Schmid S. The evolutionary price of anarchy: Locally
bounded agents in a dynamic virus game. In: Proceedings of the 23rd International
Conference on Principles of Distributed Systems. Vol 153. Schloss Dagstuhl
- Leibniz-Zentrum für Informatik; 2020. doi:10.4230/LIPIcs.OPODIS.2019.21'
apa: 'Schmid, L., Chatterjee, K., & Schmid, S. (2020). The evolutionary price
of anarchy: Locally bounded agents in a dynamic virus game. In Proceedings
of the 23rd International Conference on Principles of Distributed Systems
(Vol. 153). Neuchâtel, Switzerland: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
https://doi.org/10.4230/LIPIcs.OPODIS.2019.21'
chicago: 'Schmid, Laura, Krishnendu Chatterjee, and Stefan Schmid. “The Evolutionary
Price of Anarchy: Locally Bounded Agents in a Dynamic Virus Game.” In Proceedings
of the 23rd International Conference on Principles of Distributed Systems,
Vol. 153. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020. https://doi.org/10.4230/LIPIcs.OPODIS.2019.21.'
ieee: 'L. Schmid, K. Chatterjee, and S. Schmid, “The evolutionary price of anarchy:
Locally bounded agents in a dynamic virus game,” in Proceedings of the 23rd
International Conference on Principles of Distributed Systems, Neuchâtel,
Switzerland, 2020, vol. 153.'
ista: 'Schmid L, Chatterjee K, Schmid S. 2020. The evolutionary price of anarchy:
Locally bounded agents in a dynamic virus game. Proceedings of the 23rd International
Conference on Principles of Distributed Systems. OPODIS: International Conference
on Principles of Distributed Systems, LIPIcs, vol. 153, 21.'
mla: 'Schmid, Laura, et al. “The Evolutionary Price of Anarchy: Locally Bounded
Agents in a Dynamic Virus Game.” Proceedings of the 23rd International Conference
on Principles of Distributed Systems, vol. 153, 21, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2020, doi:10.4230/LIPIcs.OPODIS.2019.21.'
short: L. Schmid, K. Chatterjee, S. Schmid, in:, Proceedings of the 23rd International
Conference on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2020.
conference:
end_date: 2019-12-19
location: Neuchâtel, Switzerland
name: 'OPODIS: International Conference on Principles of Distributed Systems'
start_date: 2019-12-17
date_created: 2020-01-21T16:00:26Z
date_published: 2020-02-10T00:00:00Z
date_updated: 2023-02-23T13:05:49Z
day: '10'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.OPODIS.2019.21
external_id:
arxiv:
- '1906.00110'
file:
- access_level: open_access
checksum: 9a91916ac2c21ab42458fcda39ef0b8d
content_type: application/pdf
creator: dernst
date_created: 2020-03-23T09:14:06Z
date_updated: 2020-07-14T12:47:56Z
file_id: '7608'
file_name: 2019_LIPIcS_Schmid.pdf
file_size: 630752
relation: main_file
file_date_updated: 2020-07-14T12:47:56Z
has_accepted_license: '1'
intvolume: ' 153'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Preprint
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
publication: Proceedings of the 23rd International Conference on Principles of Distributed
Systems
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The evolutionary price of anarchy: Locally bounded agents in a dynamic virus
game'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 153
year: '2020'
...
---
_id: '7348'
abstract:
- lang: eng
text: 'The monitoring of event frequencies can be used to recognize behavioral anomalies,
to identify trends, and to deduce or discard hypotheses about the underlying system.
For example, the performance of a web server may be monitored based on the ratio
of the total count of requests from the least and most active clients. Exact frequency
monitoring, however, can be prohibitively expensive; in the above example it would
require as many counters as there are clients. In this paper, we propose the efficient
probabilistic monitoring of common frequency properties, including the mode (i.e.,
the most common event) and the median of an event sequence. We define a logic
to express composite frequency properties as a combination of atomic frequency
properties. Our main contribution is an algorithm that, under suitable probabilistic
assumptions, can be used to monitor these important frequency properties with
four counters, independent of the number of different events. Our algorithm samples
longer and longer subwords of an infinite event sequence. We prove the almost-sure
convergence of our algorithm by generalizing ergodic theory from increasing-length
prefixes to increasing-length subwords of an infinite sequence. A similar algorithm
could be used to learn a connected Markov chain of a given structure from observing
its outputs, to arbitrary precision, for a given confidence. '
alternative_title:
- LIPIcs
article_number: '20'
article_processing_charge: No
arxiv: 1
author:
- first_name: Thomas
full_name: Ferrere, Thomas
id: 40960E6E-F248-11E8-B48F-1D18A9856A87
last_name: Ferrere
orcid: 0000-0001-5199-3143
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Bernhard
full_name: Kragl, Bernhard
id: 320FC952-F248-11E8-B48F-1D18A9856A87
last_name: Kragl
orcid: 0000-0001-7745-9117
citation:
ama: 'Ferrere T, Henzinger TA, Kragl B. Monitoring event frequencies. In: 28th
EACSL Annual Conference on Computer Science Logic. Vol 152. Schloss Dagstuhl
- Leibniz-Zentrum für Informatik; 2020. doi:10.4230/LIPIcs.CSL.2020.20'
apa: 'Ferrere, T., Henzinger, T. A., & Kragl, B. (2020). Monitoring event frequencies.
In 28th EACSL Annual Conference on Computer Science Logic (Vol. 152). Barcelona,
Spain: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CSL.2020.20'
chicago: Ferrere, Thomas, Thomas A Henzinger, and Bernhard Kragl. “Monitoring Event
Frequencies.” In 28th EACSL Annual Conference on Computer Science Logic,
Vol. 152. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020. https://doi.org/10.4230/LIPIcs.CSL.2020.20.
ieee: T. Ferrere, T. A. Henzinger, and B. Kragl, “Monitoring event frequencies,”
in 28th EACSL Annual Conference on Computer Science Logic, Barcelona, Spain,
2020, vol. 152.
ista: 'Ferrere T, Henzinger TA, Kragl B. 2020. Monitoring event frequencies. 28th
EACSL Annual Conference on Computer Science Logic. CSL: Computer Science Logic,
LIPIcs, vol. 152, 20.'
mla: Ferrere, Thomas, et al. “Monitoring Event Frequencies.” 28th EACSL Annual
Conference on Computer Science Logic, vol. 152, 20, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2020, doi:10.4230/LIPIcs.CSL.2020.20.
short: T. Ferrere, T.A. Henzinger, B. Kragl, in:, 28th EACSL Annual Conference on
Computer Science Logic, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020.
conference:
end_date: 2020-01-16
location: Barcelona, Spain
name: 'CSL: Computer Science Logic'
start_date: 2020-01-13
date_created: 2020-01-21T11:22:21Z
date_published: 2020-01-15T00:00:00Z
date_updated: 2021-01-12T08:13:12Z
day: '15'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.4230/LIPIcs.CSL.2020.20
external_id:
arxiv:
- '1910.06097'
file:
- access_level: open_access
checksum: b9a691d658d075c6369d3304d17fb818
content_type: application/pdf
creator: bkragl
date_created: 2020-01-21T11:21:04Z
date_updated: 2020-07-14T12:47:56Z
file_id: '7349'
file_name: main.pdf
file_size: 617206
relation: main_file
file_date_updated: 2020-07-14T12:47:56Z
has_accepted_license: '1'
intvolume: ' 152'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 25F2ACDE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11402-N23
name: Rigorous Systems Engineering
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z211
name: The Wittgenstein Prize
publication: 28th EACSL Annual Conference on Computer Science Logic
publication_identifier:
isbn:
- '9783959771320'
issn:
- 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: 1
status: public
title: Monitoring event frequencies
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 152
year: '2020'
...
---
_id: '7350'
abstract:
- lang: eng
text: The ability to sense environmental temperature and to coordinate growth and
development accordingly, is critical to the reproductive success of plants. Flowering
time is regulated at the level of gene expression by a complex network of factors
that integrate environmental and developmental cues. One of the main players,
involved in modulating flowering time in response to changes in ambient temperature
is FLOWERING LOCUS M (FLM). FLM transcripts can undergo extensive alternative
splicing producing multiple variants, of which FLM-β and FLM-δ are the most representative.
While FLM-β codes for the flowering repressor FLM protein, translation of FLM-δ
has the opposite effect on flowering. Here we show that the cyclin-dependent kinase
G2 (CDKG2), together with its cognate cyclin, CYCLYN L1 (CYCL1) affects the alternative
splicing of FLM, balancing the levels of FLM-β and FLM-δ across the ambient temperature
range. In the absence of the CDKG2/CYCL1 complex, FLM-β expression is reduced
while FLM-δ is increased in a temperature dependent manner and these changes are
associated with an early flowering phenotype in the cdkg2 mutant lines. In addition,
we found that transcript variants retaining the full FLM intron 1 are sequestered
in the cell nucleus. Strikingly, FLM intron 1 splicing is also regulated by CDKG2/CYCL1.
Our results provide evidence that temperature and CDKs regulate the alternative
splicing of FLM, contributing to flowering time definition.
article_number: '1680'
article_processing_charge: No
article_type: original
author:
- first_name: Candida
full_name: Nibau, Candida
last_name: Nibau
- first_name: Marçal
full_name: Gallemi, Marçal
id: 460C6802-F248-11E8-B48F-1D18A9856A87
last_name: Gallemi
orcid: 0000-0003-4675-6893
- first_name: Despoina
full_name: Dadarou, Despoina
last_name: Dadarou
- first_name: John H.
full_name: Doonan, John H.
last_name: Doonan
- first_name: Nicola
full_name: Cavallari, Nicola
id: 457160E6-F248-11E8-B48F-1D18A9856A87
last_name: Cavallari
citation:
ama: Nibau C, Gallemi M, Dadarou D, Doonan JH, Cavallari N. Thermo-sensitive alternative
splicing of FLOWERING LOCUS M is modulated by cyclin-dependent kinase G2. Frontiers
in Plant Science. 2020;10. doi:10.3389/fpls.2019.01680
apa: Nibau, C., Gallemi, M., Dadarou, D., Doonan, J. H., & Cavallari, N. (2020).
Thermo-sensitive alternative splicing of FLOWERING LOCUS M is modulated by cyclin-dependent
kinase G2. Frontiers in Plant Science. Frontiers Media. https://doi.org/10.3389/fpls.2019.01680
chicago: Nibau, Candida, Marçal Gallemi, Despoina Dadarou, John H. Doonan, and Nicola
Cavallari. “Thermo-Sensitive Alternative Splicing of FLOWERING LOCUS M Is Modulated
by Cyclin-Dependent Kinase G2.” Frontiers in Plant Science. Frontiers Media,
2020. https://doi.org/10.3389/fpls.2019.01680.
ieee: C. Nibau, M. Gallemi, D. Dadarou, J. H. Doonan, and N. Cavallari, “Thermo-sensitive
alternative splicing of FLOWERING LOCUS M is modulated by cyclin-dependent kinase
G2,” Frontiers in Plant Science, vol. 10. Frontiers Media, 2020.
ista: Nibau C, Gallemi M, Dadarou D, Doonan JH, Cavallari N. 2020. Thermo-sensitive
alternative splicing of FLOWERING LOCUS M is modulated by cyclin-dependent kinase
G2. Frontiers in Plant Science. 10, 1680.
mla: Nibau, Candida, et al. “Thermo-Sensitive Alternative Splicing of FLOWERING
LOCUS M Is Modulated by Cyclin-Dependent Kinase G2.” Frontiers in Plant Science,
vol. 10, 1680, Frontiers Media, 2020, doi:10.3389/fpls.2019.01680.
short: C. Nibau, M. Gallemi, D. Dadarou, J.H. Doonan, N. Cavallari, Frontiers in
Plant Science 10 (2020).
date_created: 2020-01-22T15:23:57Z
date_published: 2020-01-22T00:00:00Z
date_updated: 2023-08-17T14:21:45Z
day: '22'
ddc:
- '580'
department:
- _id: EvBe
doi: 10.3389/fpls.2019.01680
external_id:
isi:
- '000511376000001'
file:
- access_level: open_access
checksum: d1f92e60a713fbd15097ce895e5c7ccb
content_type: application/pdf
creator: dernst
date_created: 2020-01-27T09:07:02Z
date_updated: 2020-07-14T12:47:56Z
file_id: '7366'
file_name: 2020_FrontiersPlantScience_Nibau.pdf
file_size: 1951438
relation: main_file
file_date_updated: 2020-07-14T12:47:56Z
has_accepted_license: '1'
intvolume: ' 10'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
publication: Frontiers in Plant Science
publication_identifier:
issn:
- 1664-462X
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: Thermo-sensitive alternative splicing of FLOWERING LOCUS M is modulated by
cyclin-dependent kinase G2
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 10
year: '2020'
...
---
_id: '7364'
abstract:
- lang: eng
text: We present nsCouette, a highly scalable software tool to solve the Navier–Stokes
equations for incompressible fluid flow between differentially heated and independently
rotating, concentric cylinders. It is based on a pseudospectral spatial discretization
and dynamic time-stepping. It is implemented in modern Fortran with a hybrid MPI-OpenMP
parallelization scheme and thus designed to compute turbulent flows at high Reynolds
and Rayleigh numbers. An additional GPU implementation (C-CUDA) for intermediate
problem sizes and a version for pipe flow (nsPipe) are also provided.
article_number: '100395'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jose M
full_name: Lopez Alonso, Jose M
id: 40770848-F248-11E8-B48F-1D18A9856A87
last_name: Lopez Alonso
orcid: 0000-0002-0384-2022
- first_name: Daniel
full_name: Feldmann, Daniel
last_name: Feldmann
- first_name: Markus
full_name: Rampp, Markus
last_name: Rampp
- first_name: Alberto
full_name: Vela-Martín, Alberto
last_name: Vela-Martín
- first_name: Liang
full_name: Shi, Liang
id: 374A3F1A-F248-11E8-B48F-1D18A9856A87
last_name: Shi
- first_name: Marc
full_name: Avila, Marc
last_name: Avila
citation:
ama: Lopez Alonso JM, Feldmann D, Rampp M, Vela-Martín A, Shi L, Avila M. nsCouette
– A high-performance code for direct numerical simulations of turbulent Taylor–Couette
flow. SoftwareX. 2020;11. doi:10.1016/j.softx.2019.100395
apa: Lopez Alonso, J. M., Feldmann, D., Rampp, M., Vela-Martín, A., Shi, L., &
Avila, M. (2020). nsCouette – A high-performance code for direct numerical simulations
of turbulent Taylor–Couette flow. SoftwareX. Elsevier. https://doi.org/10.1016/j.softx.2019.100395
chicago: Lopez Alonso, Jose M, Daniel Feldmann, Markus Rampp, Alberto Vela-Martín,
Liang Shi, and Marc Avila. “NsCouette – A High-Performance Code for Direct Numerical
Simulations of Turbulent Taylor–Couette Flow.” SoftwareX. Elsevier, 2020.
https://doi.org/10.1016/j.softx.2019.100395.
ieee: J. M. Lopez Alonso, D. Feldmann, M. Rampp, A. Vela-Martín, L. Shi, and M.
Avila, “nsCouette – A high-performance code for direct numerical simulations of
turbulent Taylor–Couette flow,” SoftwareX, vol. 11. Elsevier, 2020.
ista: Lopez Alonso JM, Feldmann D, Rampp M, Vela-Martín A, Shi L, Avila M. 2020.
nsCouette – A high-performance code for direct numerical simulations of turbulent
Taylor–Couette flow. SoftwareX. 11, 100395.
mla: Lopez Alonso, Jose M., et al. “NsCouette – A High-Performance Code for Direct
Numerical Simulations of Turbulent Taylor–Couette Flow.” SoftwareX, vol.
11, 100395, Elsevier, 2020, doi:10.1016/j.softx.2019.100395.
short: J.M. Lopez Alonso, D. Feldmann, M. Rampp, A. Vela-Martín, L. Shi, M. Avila,
SoftwareX 11 (2020).
date_created: 2020-01-26T23:00:35Z
date_published: 2020-01-17T00:00:00Z
date_updated: 2023-08-17T14:29:59Z
day: '17'
ddc:
- '000'
department:
- _id: BjHo
doi: 10.1016/j.softx.2019.100395
external_id:
arxiv:
- '1908.00587'
isi:
- '000552271200011'
file:
- access_level: open_access
checksum: 2af1a1a3cc33557b345145276f221668
content_type: application/pdf
creator: dernst
date_created: 2020-01-27T07:32:46Z
date_updated: 2020-07-14T12:47:56Z
file_id: '7365'
file_name: 2020_SoftwareX_Lopez.pdf
file_size: 679707
relation: main_file
file_date_updated: 2020-07-14T12:47:56Z
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '01'
oa: 1
oa_version: Published Version
publication: SoftwareX
publication_identifier:
eissn:
- '23527110'
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: nsCouette – A high-performance code for direct numerical simulations of turbulent
Taylor–Couette flow
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2020'
...
---
_id: '7369'
abstract:
- lang: eng
text: Neuronal responses to complex stimuli and tasks can encompass a wide range
of time scales. Understanding these responses requires measures that characterize
how the information on these response patterns are represented across multiple
temporal resolutions. In this paper we propose a metric – which we call multiscale
relevance (MSR) – to capture the dynamical variability of the activity of single
neurons across different time scales. The MSR is a non-parametric, fully featureless
indicator in that it uses only the time stamps of the firing activity without
resorting to any a priori covariate or invoking any specific structure in the
tuning curve for neural activity. When applied to neural data from the mEC and
from the ADn and PoS regions of freely-behaving rodents, we found that neurons
having low MSR tend to have low mutual information and low firing sparsity across
the correlates that are believed to be encoded by the region of the brain where
the recordings were made. In addition, neurons with high MSR contain significant
information on spatial navigation and allow to decode spatial position or head
direction as efficiently as those neurons whose firing activity has high mutual
information with the covariate to be decoded and significantly better than the
set of neurons with high local variations in their interspike intervals. Given
these results, we propose that the MSR can be used as a measure to rank and select
neurons for their information content without the need to appeal to any a priori
covariate.
acknowledgement: This research was supported by the Kavli Foundation and the Centre
of Excellence scheme of the Research Council of Norway (Centre for Neural Computation).
RJC is currently receiving funding from the European Union’s Horizon 2020 research
and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Ryan J
full_name: Cubero, Ryan J
id: 850B2E12-9CD4-11E9-837F-E719E6697425
last_name: Cubero
orcid: 0000-0003-0002-1867
- first_name: Matteo
full_name: Marsili, Matteo
last_name: Marsili
- first_name: Yasser
full_name: Roudi, Yasser
last_name: Roudi
citation:
ama: Cubero RJ, Marsili M, Roudi Y. Multiscale relevance and informative encoding
in neuronal spike trains. Journal of Computational Neuroscience. 2020;48:85-102.
doi:10.1007/s10827-020-00740-x
apa: Cubero, R. J., Marsili, M., & Roudi, Y. (2020). Multiscale relevance and
informative encoding in neuronal spike trains. Journal of Computational Neuroscience.
Springer Nature. https://doi.org/10.1007/s10827-020-00740-x
chicago: Cubero, Ryan J, Matteo Marsili, and Yasser Roudi. “Multiscale Relevance
and Informative Encoding in Neuronal Spike Trains.” Journal of Computational
Neuroscience. Springer Nature, 2020. https://doi.org/10.1007/s10827-020-00740-x.
ieee: R. J. Cubero, M. Marsili, and Y. Roudi, “Multiscale relevance and informative
encoding in neuronal spike trains,” Journal of Computational Neuroscience,
vol. 48. Springer Nature, pp. 85–102, 2020.
ista: Cubero RJ, Marsili M, Roudi Y. 2020. Multiscale relevance and informative
encoding in neuronal spike trains. Journal of Computational Neuroscience. 48,
85–102.
mla: Cubero, Ryan J., et al. “Multiscale Relevance and Informative Encoding in Neuronal
Spike Trains.” Journal of Computational Neuroscience, vol. 48, Springer
Nature, 2020, pp. 85–102, doi:10.1007/s10827-020-00740-x.
short: R.J. Cubero, M. Marsili, Y. Roudi, Journal of Computational Neuroscience
48 (2020) 85–102.
date_created: 2020-01-28T10:34:00Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2023-08-17T14:35:22Z
day: '01'
ddc:
- '004'
- '519'
- '570'
department:
- _id: SaSi
doi: 10.1007/s10827-020-00740-x
ec_funded: 1
external_id:
isi:
- '000515321800006'
file:
- access_level: open_access
checksum: 036e9451d6cd0c190ad25791bf82393b
content_type: application/pdf
creator: rcubero
date_created: 2020-01-28T09:31:09Z
date_updated: 2020-07-14T12:47:56Z
file_id: '7380'
file_name: 10827_2020_740_MOESM1_ESM.pdf
file_size: 1941355
relation: supplementary_material
- access_level: open_access
checksum: 4dd8b1fd4b54486f79d82ac7b2a412b2
content_type: application/pdf
creator: rcubero
date_created: 2020-01-28T09:31:09Z
date_updated: 2020-07-14T12:47:56Z
file_id: '7381'
file_name: Cubero2020_Article_MultiscaleRelevanceAndInformat.pdf
file_size: 3257880
relation: main_file
file_date_updated: 2020-07-14T12:47:56Z
has_accepted_license: '1'
intvolume: ' 48'
isi: 1
keyword:
- Time series analysis
- Multiple time scale analysis
- Spike train data
- Information theory
- Bayesian decoding
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 85-102
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Journal of Computational Neuroscience
publication_identifier:
eissn:
- 1573-6873
issn:
- 0929-5313
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multiscale relevance and informative encoding in neuronal spike trains
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 48
year: '2020'
...
---
_id: '7383'
abstract:
- lang: eng
text: Organisms cope with change by employing transcriptional regulators. However,
when faced with rare environments, the evolution of transcriptional regulators
and their promoters may be too slow. We ask whether the intrinsic instability
of gene duplication and amplification provides a generic alternative to canonical
gene regulation. By real-time monitoring of gene copy number mutations in E. coli,
we show that gene duplications and amplifications enable adaptation to fluctuating
environments by rapidly generating copy number, and hence expression level, polymorphism.
This ‘amplification-mediated gene expression tuning’ occurs on timescales similar
to canonical gene regulation and can deal with rapid environmental changes. Mathematical
modeling shows that amplifications also tune gene expression in stochastic environments
where transcription factor-based schemes are hard to evolve or maintain. The fleeting
nature of gene amplifications gives rise to a generic population-level mechanism
that relies on genetic heterogeneity to rapidly tune expression of any gene, without
leaving any genomic signature.
article_processing_charge: No
author:
- first_name: Rok
full_name: Grah, Rok
id: 483E70DE-F248-11E8-B48F-1D18A9856A87
last_name: Grah
orcid: 0000-0003-2539-3560
citation:
ama: 'Grah R. Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level
Gene Expression regulation. 2020. doi:10.15479/AT:ISTA:7383'
apa: 'Grah, R. (2020). Matlab scripts for the Paper: Gene Amplification as a Form
of Population-Level Gene Expression regulation. Institute of Science and Technology
Austria. https://doi.org/10.15479/AT:ISTA:7383'
chicago: 'Grah, Rok. “Matlab Scripts for the Paper: Gene Amplification as a Form
of Population-Level Gene Expression Regulation.” Institute of Science and Technology
Austria, 2020. https://doi.org/10.15479/AT:ISTA:7383.'
ieee: 'R. Grah, “Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level
Gene Expression regulation.” Institute of Science and Technology Austria, 2020.'
ista: 'Grah R. 2020. Matlab scripts for the Paper: Gene Amplification as a Form
of Population-Level Gene Expression regulation, Institute of Science and Technology
Austria, 10.15479/AT:ISTA:7383.'
mla: 'Grah, Rok. Matlab Scripts for the Paper: Gene Amplification as a Form of
Population-Level Gene Expression Regulation. Institute of Science and Technology
Austria, 2020, doi:10.15479/AT:ISTA:7383.'
short: R. Grah, (2020).
contributor:
- contributor_type: project_leader
first_name: Calin C
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
date_created: 2020-01-28T10:41:49Z
date_published: 2020-01-28T00:00:00Z
date_updated: 2024-02-21T12:42:31Z
day: '28'
department:
- _id: CaGu
- _id: GaTk
doi: 10.15479/AT:ISTA:7383
file:
- access_level: open_access
checksum: 9d292cf5207b3829225f44c044cdb3fd
content_type: application/zip
creator: rgrah
date_created: 2020-01-28T10:39:40Z
date_updated: 2020-07-14T12:47:57Z
file_id: '7384'
file_name: Scripts.zip
file_size: 73363365
relation: main_file
- access_level: open_access
checksum: 4076ceab32ef588cc233802bab24c1ab
content_type: text/plain
creator: rgrah
date_created: 2020-01-28T10:39:30Z
date_updated: 2020-07-14T12:47:57Z
file_id: '7385'
file_name: READ_ME_MAIN.txt
file_size: 962
relation: main_file
file_date_updated: 2020-07-14T12:47:57Z
has_accepted_license: '1'
keyword:
- Matlab scripts
- analysis of microfluidics
- mathematical model
month: '01'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '7652'
relation: used_in_publication
status: public
status: public
title: 'Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level
Gene Expression regulation'
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7387'
abstract:
- lang: eng
text: Most bacteria accomplish cell division with the help of a dynamic protein
complex called the divisome, which spans the cell envelope in the plane of division.
Assembly and activation of this machinery are coordinated by the tubulin-related
GTPase FtsZ, which was found to form treadmilling filaments on supported bilayers
in vitro1, as well as in live cells, in which filaments circle around the cell
division site2,3. Treadmilling of FtsZ is thought to actively move proteins around
the division septum, thereby distributing peptidoglycan synthesis and coordinating
the inward growth of the septum to form the new poles of the daughter cells4.
However, the molecular mechanisms underlying this function are largely unknown.
Here, to study how FtsZ polymerization dynamics are coupled to downstream proteins,
we reconstituted part of the bacterial cell division machinery using its purified
components FtsZ, FtsA and truncated transmembrane proteins essential for cell
division. We found that the membrane-bound cytosolic peptides of FtsN and FtsQ
co-migrated with treadmilling FtsZ–FtsA filaments, but despite their directed
collective behaviour, individual peptides showed random motion and transient confinement.
Our work suggests that divisome proteins follow treadmilling FtsZ filaments by
a diffusion-and-capture mechanism, which can give rise to a moving zone of signalling
activity at the division site.
acknowledgement: We acknowledge members of the Loose laboratory at IST Austria for
helpful discussions—in particular, P. Caldas for help with the treadmilling analysis,
M. Jimenez, A. Raso and N. Ropero for providing Alexa Fluor 488- and Alexa Fluor
647-labelled FtsA for the MST and analytical ultracentrifugation experiments. We
thank C. You for providing the DODA-tris-NTA phospholipids, as well as J. Piehler
and C. Richter (Department of Biology, University of Osnabruck, Germany) for the
SLIMfast single-molecule tracking software and help with the confinement analysis.
We thank J. Errington and H. Murray (both at Newcastle University, UK) for critical
reading of the manuscript, and J. Brugués (MPI-CBG and MPI-PKS, Dresden, Germany)
for help with the MATLAB programming and reading of the manuscript. This work was
supported by the European Research Council through grant ERC-2015-StG-679239 to
M.L. and grants HFSP LT 000824/2016-L4 and EMBO ALTF 1163-2015 to N.B., a grant
from the Ministry of Economy and Competitiveness of the Spanish Government (BFU2016-75471-C2-1-P)
to C.A. and G.R., and a Wellcome Trust Senior Investigator award (101824/Z/13/Z)
and a grant from the BBSRC (BB/R017409/1) to W.V.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Natalia S.
full_name: Baranova, Natalia S.
id: 38661662-F248-11E8-B48F-1D18A9856A87
last_name: Baranova
orcid: 0000-0002-3086-9124
- first_name: Philipp
full_name: Radler, Philipp
id: 40136C2A-F248-11E8-B48F-1D18A9856A87
last_name: Radler
orcid: '0000-0001-9198-2182 '
- first_name: Víctor M.
full_name: Hernández-Rocamora, Víctor M.
last_name: Hernández-Rocamora
- first_name: Carlos
full_name: Alfonso, Carlos
last_name: Alfonso
- first_name: Maria D
full_name: Lopez Pelegrin, Maria D
id: 319AA9CE-F248-11E8-B48F-1D18A9856A87
last_name: Lopez Pelegrin
- first_name: Germán
full_name: Rivas, Germán
last_name: Rivas
- first_name: Waldemar
full_name: Vollmer, Waldemar
last_name: Vollmer
- first_name: Martin
full_name: Loose, Martin
id: 462D4284-F248-11E8-B48F-1D18A9856A87
last_name: Loose
orcid: 0000-0001-7309-9724
citation:
ama: Baranova NS, Radler P, Hernández-Rocamora VM, et al. Diffusion and capture
permits dynamic coupling between treadmilling FtsZ filaments and cell division
proteins. Nature Microbiology. 2020;5:407-417. doi:10.1038/s41564-019-0657-5
apa: Baranova, N. S., Radler, P., Hernández-Rocamora, V. M., Alfonso, C., Lopez
Pelegrin, M. D., Rivas, G., … Loose, M. (2020). Diffusion and capture permits
dynamic coupling between treadmilling FtsZ filaments and cell division proteins.
Nature Microbiology. Springer Nature. https://doi.org/10.1038/s41564-019-0657-5
chicago: Baranova, Natalia S., Philipp Radler, Víctor M. Hernández-Rocamora, Carlos
Alfonso, Maria D Lopez Pelegrin, Germán Rivas, Waldemar Vollmer, and Martin Loose.
“Diffusion and Capture Permits Dynamic Coupling between Treadmilling FtsZ Filaments
and Cell Division Proteins.” Nature Microbiology. Springer Nature, 2020.
https://doi.org/10.1038/s41564-019-0657-5.
ieee: N. S. Baranova et al., “Diffusion and capture permits dynamic coupling
between treadmilling FtsZ filaments and cell division proteins,” Nature Microbiology,
vol. 5. Springer Nature, pp. 407–417, 2020.
ista: Baranova NS, Radler P, Hernández-Rocamora VM, Alfonso C, Lopez Pelegrin MD,
Rivas G, Vollmer W, Loose M. 2020. Diffusion and capture permits dynamic coupling
between treadmilling FtsZ filaments and cell division proteins. Nature Microbiology.
5, 407–417.
mla: Baranova, Natalia S., et al. “Diffusion and Capture Permits Dynamic Coupling
between Treadmilling FtsZ Filaments and Cell Division Proteins.” Nature Microbiology,
vol. 5, Springer Nature, 2020, pp. 407–17, doi:10.1038/s41564-019-0657-5.
short: N.S. Baranova, P. Radler, V.M. Hernández-Rocamora, C. Alfonso, M.D. Lopez
Pelegrin, G. Rivas, W. Vollmer, M. Loose, Nature Microbiology 5 (2020) 407–417.
date_created: 2020-01-28T16:14:41Z
date_published: 2020-01-20T00:00:00Z
date_updated: 2023-10-06T12:22:38Z
day: '20'
department:
- _id: MaLo
doi: 10.1038/s41564-019-0657-5
ec_funded: 1
external_id:
isi:
- '000508584700007'
pmid:
- '31959972'
intvolume: ' 5'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://europepmc.org/article/PMC/7048620
month: '01'
oa: 1
oa_version: Submitted Version
page: 407-417
pmid: 1
project:
- _id: 2595697A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '679239'
name: Self-Organization of the Bacterial Cell
- _id: 259B655A-B435-11E9-9278-68D0E5697425
grant_number: LT000824/2016
name: Reconstitution of bacterial cell wall sythesis
- _id: 2596EAB6-B435-11E9-9278-68D0E5697425
grant_number: ALTF 2015-1163
name: Synthesis of bacterial cell wall
publication: Nature Microbiology
publication_identifier:
issn:
- 2058-5276
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/little-cell-big-cover-story/
record:
- id: '14280'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Diffusion and capture permits dynamic coupling between treadmilling FtsZ filaments
and cell division proteins
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 5
year: '2020'
...
---
_id: '7388'
abstract:
- lang: eng
text: We give a Wong-Zakai type characterisation of the solutions of quasilinear
heat equations driven by space-time white noise in 1 + 1 dimensions. In order
to show that the renormalisation counterterms are local in the solution, a careful
arrangement of a few hundred terms is required. The main tool in this computation
is a general ‘integration by parts’ formula that provides a number of linear identities
for the renormalisation constants.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Mate
full_name: Gerencser, Mate
id: 44ECEDF2-F248-11E8-B48F-1D18A9856A87
last_name: Gerencser
citation:
ama: Gerencser M. Nondivergence form quasilinear heat equations driven by space-time
white noise. Annales de l’Institut Henri Poincaré C, Analyse non linéaire.
2020;37(3):663-682. doi:10.1016/j.anihpc.2020.01.003
apa: Gerencser, M. (2020). Nondivergence form quasilinear heat equations driven
by space-time white noise. Annales de l’Institut Henri Poincaré C, Analyse
Non Linéaire. Elsevier. https://doi.org/10.1016/j.anihpc.2020.01.003
chicago: Gerencser, Mate. “Nondivergence Form Quasilinear Heat Equations Driven
by Space-Time White Noise.” Annales de l’Institut Henri Poincaré C, Analyse
Non Linéaire. Elsevier, 2020. https://doi.org/10.1016/j.anihpc.2020.01.003.
ieee: M. Gerencser, “Nondivergence form quasilinear heat equations driven by space-time
white noise,” Annales de l’Institut Henri Poincaré C, Analyse non linéaire,
vol. 37, no. 3. Elsevier, pp. 663–682, 2020.
ista: Gerencser M. 2020. Nondivergence form quasilinear heat equations driven by
space-time white noise. Annales de l’Institut Henri Poincaré C, Analyse non linéaire.
37(3), 663–682.
mla: Gerencser, Mate. “Nondivergence Form Quasilinear Heat Equations Driven by Space-Time
White Noise.” Annales de l’Institut Henri Poincaré C, Analyse Non Linéaire,
vol. 37, no. 3, Elsevier, 2020, pp. 663–82, doi:10.1016/j.anihpc.2020.01.003.
short: M. Gerencser, Annales de l’Institut Henri Poincaré C, Analyse Non Linéaire
37 (2020) 663–682.
date_created: 2020-01-29T09:39:41Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2023-08-17T14:35:46Z
day: '01'
department:
- _id: JaMa
doi: 10.1016/j.anihpc.2020.01.003
external_id:
arxiv:
- '1902.07635'
isi:
- '000531049800007'
intvolume: ' 37'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1902.07635
month: '05'
oa: 1
oa_version: Preprint
page: 663-682
publication: Annales de l'Institut Henri Poincaré C, Analyse non linéaire
publication_identifier:
issn:
- 0294-1449
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nondivergence form quasilinear heat equations driven by space-time white noise
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 37
year: '2020'
...
---
_id: '7389'
abstract:
- lang: eng
text: "Recently Kloeckner described the structure of the isometry group of the quadratic
Wasserstein space W_2(R^n). It turned out that the case of the real line is exceptional
in the sense that there exists an exotic isometry flow. Following this line of
investigation, we compute Isom(W_p(R)), the isometry group of the Wasserstein
space\r\nW_p(R) for all p \\in [1,\\infty) \\setminus {2}. We show that W_2(R)
is also exceptional regarding the\r\nparameter p: W_p(R) is isometrically rigid
if and only if p is not equal to 2. Regarding the underlying\r\nspace, we prove
that the exceptionality of p = 2 disappears if we replace R by the compact\r\ninterval
[0,1]. Surprisingly, in that case, W_p([0,1]) is isometrically rigid if and only
if\r\np is not equal to 1. Moreover, W_1([0,1]) admits isometries that split mass,
and Isom(W_1([0,1]))\r\ncannot be embedded into Isom(W_1(R))."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Gyorgy Pal
full_name: Geher, Gyorgy Pal
last_name: Geher
- first_name: Tamas
full_name: Titkos, Tamas
last_name: Titkos
- first_name: Daniel
full_name: Virosztek, Daniel
id: 48DB45DA-F248-11E8-B48F-1D18A9856A87
last_name: Virosztek
orcid: 0000-0003-1109-5511
citation:
ama: Geher GP, Titkos T, Virosztek D. Isometric study of Wasserstein spaces - the
real line. Transactions of the American Mathematical Society. 2020;373(8):5855-5883.
doi:10.1090/tran/8113
apa: Geher, G. P., Titkos, T., & Virosztek, D. (2020). Isometric study of Wasserstein
spaces - the real line. Transactions of the American Mathematical Society.
American Mathematical Society. https://doi.org/10.1090/tran/8113
chicago: Geher, Gyorgy Pal, Tamas Titkos, and Daniel Virosztek. “Isometric Study
of Wasserstein Spaces - the Real Line.” Transactions of the American Mathematical
Society. American Mathematical Society, 2020. https://doi.org/10.1090/tran/8113.
ieee: G. P. Geher, T. Titkos, and D. Virosztek, “Isometric study of Wasserstein
spaces - the real line,” Transactions of the American Mathematical Society,
vol. 373, no. 8. American Mathematical Society, pp. 5855–5883, 2020.
ista: Geher GP, Titkos T, Virosztek D. 2020. Isometric study of Wasserstein spaces
- the real line. Transactions of the American Mathematical Society. 373(8), 5855–5883.
mla: Geher, Gyorgy Pal, et al. “Isometric Study of Wasserstein Spaces - the Real
Line.” Transactions of the American Mathematical Society, vol. 373, no.
8, American Mathematical Society, 2020, pp. 5855–83, doi:10.1090/tran/8113.
short: G.P. Geher, T. Titkos, D. Virosztek, Transactions of the American Mathematical
Society 373 (2020) 5855–5883.
date_created: 2020-01-29T10:20:46Z
date_published: 2020-08-01T00:00:00Z
date_updated: 2023-08-17T14:31:03Z
day: '01'
ddc:
- '515'
department:
- _id: LaEr
doi: 10.1090/tran/8113
ec_funded: 1
external_id:
arxiv:
- '2002.00859'
isi:
- '000551418100018'
intvolume: ' 373'
isi: 1
issue: '8'
keyword:
- Wasserstein space
- isometric embeddings
- isometric rigidity
- exotic isometry flow
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2002.00859
month: '08'
oa: 1
oa_version: Preprint
page: 5855-5883
project:
- _id: 26A455A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '846294'
name: Geometric study of Wasserstein spaces and free probability
publication: Transactions of the American Mathematical Society
publication_identifier:
eissn:
- '10886850'
issn:
- '00029947'
publication_status: published
publisher: American Mathematical Society
quality_controlled: '1'
status: public
title: Isometric study of Wasserstein spaces - the real line
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 373
year: '2020'
...
---
_id: '74'
abstract:
- lang: eng
text: "We study the Gromov waist in the sense of t-neighborhoods for measures in
the Euclidean space, motivated by the famous theorem of Gromov about
\ the waist of radially symmetric Gaussian measures. In particular, it turns
our possible to extend Gromov’s original result to the case of not necessarily
\ radially symmetric Gaussian measure. We also provide examples of measures
having no t-neighborhood waist property, including a rather wide class\r\nof compactly
supported radially symmetric measures and their maps into the Euclidean space
of dimension at least 2.\r\nWe use a simpler form of Gromov’s pancake argument
\ to produce some estimates of t-neighborhoods of (weighted) volume-critical
submanifolds in the spirit of the waist theorems, including neighborhoods of algebraic
manifolds in the complex projective space. In the appendix of this paper we provide
for reader’s convenience a more detailed explanation of the Caffarelli theorem
that we use to handle not necessarily radially symmetric Gaussian\r\nmeasures."
article_processing_charge: No
arxiv: 1
author:
- first_name: Arseniy
full_name: Akopyan, Arseniy
id: 430D2C90-F248-11E8-B48F-1D18A9856A87
last_name: Akopyan
orcid: 0000-0002-2548-617X
- first_name: Roman
full_name: Karasev, Roman
last_name: Karasev
citation:
ama: 'Akopyan A, Karasev R. Gromov’s waist of non-radial Gaussian measures and radial
non-Gaussian measures. In: Klartag B, Milman E, eds. Geometric Aspects of Functional
Analysis. Vol 2256. LNM. Springer Nature; 2020:1-27. doi:10.1007/978-3-030-36020-7_1'
apa: Akopyan, A., & Karasev, R. (2020). Gromov’s waist of non-radial Gaussian
measures and radial non-Gaussian measures. In B. Klartag & E. Milman (Eds.),
Geometric Aspects of Functional Analysis (Vol. 2256, pp. 1–27). Springer
Nature. https://doi.org/10.1007/978-3-030-36020-7_1
chicago: Akopyan, Arseniy, and Roman Karasev. “Gromov’s Waist of Non-Radial Gaussian
Measures and Radial Non-Gaussian Measures.” In Geometric Aspects of Functional
Analysis, edited by Bo’az Klartag and Emanuel Milman, 2256:1–27. LNM. Springer
Nature, 2020. https://doi.org/10.1007/978-3-030-36020-7_1.
ieee: A. Akopyan and R. Karasev, “Gromov’s waist of non-radial Gaussian measures
and radial non-Gaussian measures,” in Geometric Aspects of Functional Analysis,
vol. 2256, B. Klartag and E. Milman, Eds. Springer Nature, 2020, pp. 1–27.
ista: 'Akopyan A, Karasev R. 2020.Gromov’s waist of non-radial Gaussian measures
and radial non-Gaussian measures. In: Geometric Aspects of Functional Analysis.
vol. 2256, 1–27.'
mla: Akopyan, Arseniy, and Roman Karasev. “Gromov’s Waist of Non-Radial Gaussian
Measures and Radial Non-Gaussian Measures.” Geometric Aspects of Functional
Analysis, edited by Bo’az Klartag and Emanuel Milman, vol. 2256, Springer
Nature, 2020, pp. 1–27, doi:10.1007/978-3-030-36020-7_1.
short: A. Akopyan, R. Karasev, in:, B. Klartag, E. Milman (Eds.), Geometric Aspects
of Functional Analysis, Springer Nature, 2020, pp. 1–27.
date_created: 2018-12-11T11:44:29Z
date_published: 2020-06-21T00:00:00Z
date_updated: 2023-08-17T13:48:31Z
day: '21'
department:
- _id: HeEd
- _id: JaMa
doi: 10.1007/978-3-030-36020-7_1
ec_funded: 1
editor:
- first_name: Bo'az
full_name: Klartag, Bo'az
last_name: Klartag
- first_name: Emanuel
full_name: Milman, Emanuel
last_name: Milman
external_id:
arxiv:
- '1808.07350'
isi:
- '000557689300003'
intvolume: ' 2256'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1808.07350
month: '06'
oa: 1
oa_version: Preprint
page: 1-27
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
publication: Geometric Aspects of Functional Analysis
publication_identifier:
eisbn:
- '9783030360207'
eissn:
- '16179692'
isbn:
- '9783030360191'
issn:
- '00758434'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: LNM
status: public
title: Gromov's waist of non-radial Gaussian measures and radial non-Gaussian measures
type: book_chapter
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 2256
year: '2020'
...
---
_id: '7410'
abstract:
- lang: eng
text: 'Epiboly is a conserved gastrulation movement describing the thinning and
spreading of a sheet or multi-layer of cells. The zebrafish embryo has emerged
as a vital model system to address the cellular and molecular mechanisms that
drive epiboly. In the zebrafish embryo, the blastoderm, consisting of a simple
squamous epithelium (the enveloping layer) and an underlying mass of deep cells,
as well as a yolk nuclear syncytium (the yolk syncytial layer) undergo epiboly
to internalize the yolk cell during gastrulation. The major events during zebrafish
epiboly are: expansion of the enveloping layer and the internal yolk syncytial
layer, reduction and removal of the yolk membrane ahead of the advancing blastoderm
margin and deep cell rearrangements between the enveloping layer and yolk syncytial
layer to thin the blastoderm. Here, work addressing the cellular and molecular
mechanisms as well as the sources of the mechanical forces that underlie these
events is reviewed. The contribution of recent findings to the current model of
epiboly as well as open questions and future prospects are also discussed.'
article_processing_charge: No
author:
- first_name: Ashley E.E.
full_name: Bruce, Ashley E.E.
last_name: Bruce
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
citation:
ama: 'Bruce AEE, Heisenberg C-PJ. Mechanisms of zebrafish epiboly: A current view.
In: Solnica-Krezel L, ed. Gastrulation: From Embryonic Pattern to Form.
Vol 136. Current Topics in Developmental Biology. Elsevier; 2020:319-341. doi:10.1016/bs.ctdb.2019.07.001'
apa: 'Bruce, A. E. E., & Heisenberg, C.-P. J. (2020). Mechanisms of zebrafish
epiboly: A current view. In L. Solnica-Krezel (Ed.), Gastrulation: From Embryonic
Pattern to Form (Vol. 136, pp. 319–341). Elsevier. https://doi.org/10.1016/bs.ctdb.2019.07.001'
chicago: 'Bruce, Ashley E.E., and Carl-Philipp J Heisenberg. “Mechanisms of Zebrafish
Epiboly: A Current View.” In Gastrulation: From Embryonic Pattern to Form,
edited by Lilianna Solnica-Krezel, 136:319–41. Current Topics in Developmental
Biology. Elsevier, 2020. https://doi.org/10.1016/bs.ctdb.2019.07.001.'
ieee: 'A. E. E. Bruce and C.-P. J. Heisenberg, “Mechanisms of zebrafish epiboly:
A current view,” in Gastrulation: From Embryonic Pattern to Form, vol.
136, L. Solnica-Krezel, Ed. Elsevier, 2020, pp. 319–341.'
ista: 'Bruce AEE, Heisenberg C-PJ. 2020.Mechanisms of zebrafish epiboly: A current
view. In: Gastrulation: From Embryonic Pattern to Form. vol. 136, 319–341.'
mla: 'Bruce, Ashley E. E., and Carl-Philipp J. Heisenberg. “Mechanisms of Zebrafish
Epiboly: A Current View.” Gastrulation: From Embryonic Pattern to Form,
edited by Lilianna Solnica-Krezel, vol. 136, Elsevier, 2020, pp. 319–41, doi:10.1016/bs.ctdb.2019.07.001.'
short: 'A.E.E. Bruce, C.-P.J. Heisenberg, in:, L. Solnica-Krezel (Ed.), Gastrulation:
From Embryonic Pattern to Form, Elsevier, 2020, pp. 319–341.'
date_created: 2020-01-30T09:24:06Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2024-02-22T13:23:09Z
day: '01'
department:
- _id: CaHe
doi: 10.1016/bs.ctdb.2019.07.001
editor:
- first_name: 'Lilianna '
full_name: 'Solnica-Krezel, Lilianna '
last_name: Solnica-Krezel
external_id:
isi:
- '000611830600012'
intvolume: ' 136'
isi: 1
language:
- iso: eng
month: '01'
oa_version: None
page: 319-341
publication: 'Gastrulation: From Embryonic Pattern to Form'
publication_identifier:
isbn:
- '9780128127988'
issn:
- 0070-2153
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
series_title: Current Topics in Developmental Biology
status: public
title: 'Mechanisms of zebrafish epiboly: A current view'
type: book_chapter
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 136
year: '2020'
...
---
_id: '7416'
abstract:
- lang: eng
text: Earlier, we demonstrated that transcript levels of METAL TOLERANCE PROTEIN2
(MTP2) and of HEAVY METAL ATPase2 (HMA2) increase strongly in roots of Arabidopsis
upon prolonged zinc (Zn) deficiency and respond to shoot physiological Zn status,
and not to the local Zn status in roots. This provided evidence for shoot-to-root
communication in the acclimation of plants to Zn deficiency. Zn-deficient soils
limit both the yield and quality of agricultural crops and can result in clinically
relevant nutritional Zn deficiency in human populations. Implementing Zn deficiency
during cultivation of the model plant Arabidopsis thaliana on agar-solidified
media is difficult because trace element contaminations are present in almost
all commercially available agars. Here, we demonstrate root morphological acclimations
to Zn deficiency on agar-solidified medium following the effective removal of
contaminants. These advancements allow reproducible phenotyping toward understanding
fundamental plant responses to deficiencies of Zn and other essential trace elements.
article_number: '1687175'
article_processing_charge: No
article_type: original
author:
- first_name: Scott A
full_name: Sinclair, Scott A
id: 2D99FE6A-F248-11E8-B48F-1D18A9856A87
last_name: Sinclair
orcid: 0000-0002-4566-0593
- first_name: U.
full_name: Krämer, U.
last_name: Krämer
citation:
ama: Sinclair SA, Krämer U. Generation of effective zinc-deficient agar-solidified
media allows identification of root morphology changes in response to zinc limitation.
Plant Signaling & Behavior. 2020;15(1). doi:10.1080/15592324.2019.1687175
apa: Sinclair, S. A., & Krämer, U. (2020). Generation of effective zinc-deficient
agar-solidified media allows identification of root morphology changes in response
to zinc limitation. Plant Signaling & Behavior. Taylor & Francis.
https://doi.org/10.1080/15592324.2019.1687175
chicago: Sinclair, Scott A, and U. Krämer. “Generation of Effective Zinc-Deficient
Agar-Solidified Media Allows Identification of Root Morphology Changes in Response
to Zinc Limitation.” Plant Signaling & Behavior. Taylor & Francis,
2020. https://doi.org/10.1080/15592324.2019.1687175.
ieee: S. A. Sinclair and U. Krämer, “Generation of effective zinc-deficient agar-solidified
media allows identification of root morphology changes in response to zinc limitation,”
Plant Signaling & Behavior, vol. 15, no. 1. Taylor & Francis, 2020.
ista: Sinclair SA, Krämer U. 2020. Generation of effective zinc-deficient agar-solidified
media allows identification of root morphology changes in response to zinc limitation.
Plant Signaling & Behavior. 15(1), 1687175.
mla: Sinclair, Scott A., and U. Krämer. “Generation of Effective Zinc-Deficient
Agar-Solidified Media Allows Identification of Root Morphology Changes in Response
to Zinc Limitation.” Plant Signaling & Behavior, vol. 15, no. 1, 1687175,
Taylor & Francis, 2020, doi:10.1080/15592324.2019.1687175.
short: S.A. Sinclair, U. Krämer, Plant Signaling & Behavior 15 (2020).
date_created: 2020-01-30T10:12:04Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2023-10-17T09:01:48Z
day: '01'
department:
- _id: JiFr
doi: 10.1080/15592324.2019.1687175
external_id:
isi:
- '000494909300001'
pmid:
- '31696764'
intvolume: ' 15'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7012054
month: '01'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: Plant Signaling & Behavior
publication_identifier:
issn:
- 1559-2324
publication_status: published
publisher: Taylor & Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: Generation of effective zinc-deficient agar-solidified media allows identification
of root morphology changes in response to zinc limitation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2020'
...
---
_id: '7417'
abstract:
- lang: eng
text: Previously, we reported that the allelic de-etiolated by zinc (dez) and trichome
birefringence (tbr) mutants exhibit photomorphogenic development in the dark,
which is enhanced by high Zn. TRICHOME BIREFRINGENCE-LIKE proteins had been implicated
in transferring acetyl groups to various hemicelluloses. Pectin O-acetylation
levels were lower in dark-grown dez seedlings than in the wild type. We observed
Zn-enhanced photomorphogenesis in the dark also in the reduced wall acetylation
2 (rwa2-3) mutant, which exhibits lowered O-acetylation levels of cell wall macromolecules
including pectins and xyloglucans, supporting a role for cell wall macromolecule
O-acetylation in the photomorphogenic phenotypes of rwa2-3 and dez. Application
of very short oligogalacturonides (vsOGs) restored skotomorphogenesis in dark-grown
dez and rwa2-3. Here we demonstrate that in dez, O-acetylation of non-pectin cell
wall components, notably of xyloglucan, is enhanced. Our results highlight the
complexity of cell wall homeostasis and indicate against an influence of xyloglucan
O-acetylation on light-dependent seedling development.
article_number: e1687185
article_processing_charge: No
article_type: original
author:
- first_name: Scott A
full_name: Sinclair, Scott A
id: 2D99FE6A-F248-11E8-B48F-1D18A9856A87
last_name: Sinclair
orcid: 0000-0002-4566-0593
- first_name: S.
full_name: Gille, S.
last_name: Gille
- first_name: M.
full_name: Pauly, M.
last_name: Pauly
- first_name: U.
full_name: Krämer, U.
last_name: Krämer
citation:
ama: Sinclair SA, Gille S, Pauly M, Krämer U. Regulation of acetylation of plant
cell wall components is complex and responds to external stimuli. Plant Signaling
& Behavior. 2020;15(1). doi:10.1080/15592324.2019.1687185
apa: Sinclair, S. A., Gille, S., Pauly, M., & Krämer, U. (2020). Regulation
of acetylation of plant cell wall components is complex and responds to external
stimuli. Plant Signaling & Behavior. Informa UK Limited. https://doi.org/10.1080/15592324.2019.1687185
chicago: Sinclair, Scott A, S. Gille, M. Pauly, and U. Krämer. “Regulation of Acetylation
of Plant Cell Wall Components Is Complex and Responds to External Stimuli.” Plant
Signaling & Behavior. Informa UK Limited, 2020. https://doi.org/10.1080/15592324.2019.1687185.
ieee: S. A. Sinclair, S. Gille, M. Pauly, and U. Krämer, “Regulation of acetylation
of plant cell wall components is complex and responds to external stimuli,” Plant
Signaling & Behavior, vol. 15, no. 1. Informa UK Limited, 2020.
ista: Sinclair SA, Gille S, Pauly M, Krämer U. 2020. Regulation of acetylation of
plant cell wall components is complex and responds to external stimuli. Plant
Signaling & Behavior. 15(1), e1687185.
mla: Sinclair, Scott A., et al. “Regulation of Acetylation of Plant Cell Wall Components
Is Complex and Responds to External Stimuli.” Plant Signaling & Behavior,
vol. 15, no. 1, e1687185, Informa UK Limited, 2020, doi:10.1080/15592324.2019.1687185.
short: S.A. Sinclair, S. Gille, M. Pauly, U. Krämer, Plant Signaling & Behavior
15 (2020).
date_created: 2020-01-30T10:14:14Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2023-09-06T15:23:04Z
day: '01'
department:
- _id: JiFr
doi: 10.1080/15592324.2019.1687185
external_id:
isi:
- '000494907500001'
pmid:
- '31696770'
intvolume: ' 15'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7012154
month: '01'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: Plant Signaling & Behavior
publication_identifier:
issn:
- 1559-2324
publication_status: published
publisher: Informa UK Limited
quality_controlled: '1'
scopus_import: '1'
status: public
title: Regulation of acetylation of plant cell wall components is complex and responds
to external stimuli
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 15
year: '2020'
...