[{"abstract":[{"text":"Van der Holst and Pendavingh introduced a graph parameter σ, which coincides with the more famous Colin de Verdière graph parameter μ for small values. However, the definition of a is much more geometric/topological directly reflecting embeddability properties of the graph. They proved μ(G) ≤ σ(G) + 2 and conjectured σ(G) ≤ σ(G) for any graph G. We confirm this conjecture. As far as we know, this is the first topological upper bound on σ(G) which is, in general, tight.\r\nEquality between μ and σ does not hold in general as van der Holst and Pendavingh showed that there is a graph G with μ(G) ≤ 18 and σ(G) ≥ 20. We show that the gap appears at much smaller values, namely, we exhibit a graph H for which μ(H) ≥ 7 and σ(H) ≥ 8. We also prove that, in general, the gap can be large: The incidence graphs Hq of finite projective planes of order q satisfy μ(Hq) ∈ O(q3/2) and σ(Hq) ≥ q2.","lang":"eng"}],"doi":"10.1007/s00493-021-4443-7","author":[{"full_name":"Kaluza, Vojtech","last_name":"Kaluza","id":"21AE5134-9EAC-11EA-BEA2-D7BD3DDC885E","first_name":"Vojtech","orcid":"0000-0002-2512-8698"},{"orcid":"0000-0002-1191-6714","id":"38AC689C-F248-11E8-B48F-1D18A9856A87","first_name":"Martin","full_name":"Tancer, Martin","last_name":"Tancer"}],"title":"Even maps, the Colin de Verdière number and representations of graphs","_id":"10335","status":"public","acknowledgement":"V. K. gratefully acknowledges the support of Austrian Science Fund (FWF): P 30902-N35. This work was done mostly while he was employed at the University of Innsbruck. During the early stage of this research, V. K. was partially supported by Charles University project GAUK 926416. M. T. is supported by the grant no. 19-04113Y of the Czech Science Foundation(GA ˇCR) and partially supported by Charles University project UNCE/SCI/004.","publication_status":"published","publication_identifier":{"issn":["0209-9683"]},"oa_version":"Preprint","day":"01","citation":{"ista":"Kaluza V, Tancer M. 2022. Even maps, the Colin de Verdière number and representations of graphs. Combinatorica. 42, 1317–1345.","short":"V. Kaluza, M. Tancer, Combinatorica 42 (2022) 1317–1345.","ama":"Kaluza V, Tancer M. Even maps, the Colin de Verdière number and representations of graphs. Combinatorica. 2022;42:1317-1345. doi:10.1007/s00493-021-4443-7","ieee":"V. Kaluza and M. Tancer, “Even maps, the Colin de Verdière number and representations of graphs,” Combinatorica, vol. 42. Springer Nature, pp. 1317–1345, 2022.","apa":"Kaluza, V., & Tancer, M. (2022). Even maps, the Colin de Verdière number and representations of graphs. Combinatorica. Springer Nature. https://doi.org/10.1007/s00493-021-4443-7","mla":"Kaluza, Vojtech, and Martin Tancer. “Even Maps, the Colin de Verdière Number and Representations of Graphs.” Combinatorica, vol. 42, Springer Nature, 2022, pp. 1317–45, doi:10.1007/s00493-021-4443-7.","chicago":"Kaluza, Vojtech, and Martin Tancer. “Even Maps, the Colin de Verdière Number and Representations of Graphs.” Combinatorica. Springer Nature, 2022. https://doi.org/10.1007/s00493-021-4443-7."},"month":"12","ddc":["514","516"],"article_processing_charge":"No","volume":42,"arxiv":1,"year":"2022","oa":1,"article_type":"original","page":"1317-1345","publication":"Combinatorica","date_updated":"2023-08-02T06:43:27Z","external_id":{"isi":["000798210100003"],"arxiv":["1907.05055"]},"date_published":"2022-12-01T00:00:00Z","scopus_import":"1","date_created":"2021-11-25T13:49:16Z","department":[{"_id":"UlWa"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","isi":1,"language":[{"iso":"eng"}],"quality_controlled":"1","type":"journal_article","intvolume":" 42","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.1907.05055","open_access":"1"}],"publisher":"Springer Nature"},{"oa":1,"year":"2022","publication":"IEEE Transactions on Wireless Communications","date_updated":"2024-09-10T13:03:18Z","related_material":{"record":[{"status":"public","relation":"earlier_version","id":"10053"}]},"page":"3909-3920","article_type":"original","department":[{"_id":"MaMo"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"arxiv":["2012.13378"],"isi":["000809406400028"]},"date_published":"2022-06-01T00:00:00Z","date_created":"2021-11-28T23:01:29Z","scopus_import":"1","publisher":"Institute of Electrical and Electronics Engineers","intvolume":" 21","main_file_link":[{"url":"https://arxiv.org/abs/2012.13378","open_access":"1"}],"isi":1,"language":[{"iso":"eng"}],"quality_controlled":"1","type":"journal_article","title":"Parallelism versus latency in simplified successive-cancellation decoding of polar codes","author":[{"full_name":"Hashemi, Seyyed Ali","last_name":"Hashemi","first_name":"Seyyed Ali"},{"orcid":"0000-0002-3242-7020","id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco","full_name":"Mondelli, Marco","last_name":"Mondelli"},{"first_name":"Arman","full_name":"Fazeli, Arman","last_name":"Fazeli"},{"last_name":"Vardy","full_name":"Vardy, Alexander","first_name":"Alexander"},{"last_name":"Cioffi","full_name":"Cioffi, John","first_name":"John"},{"first_name":"Andrea","last_name":"Goldsmith","full_name":"Goldsmith, Andrea"}],"_id":"10364","abstract":[{"text":"This paper characterizes the latency of the simplified successive-cancellation (SSC) decoding scheme for polar codes under hardware resource constraints. In particular, when the number of processing elements P that can perform SSC decoding operations in parallel is limited, as is the case in practice, the latency of SSC decoding is O(N1-1/μ + N/P log2 log2 N/P), where N is the block length of the code and μ is the scaling exponent of the channel. Three direct consequences of this bound are presented. First, in a fully-parallel implementation where P = N/2, the latency of SSC decoding is O(N1-1/μ), which is sublinear in the block length. This recovers a result from our earlier work. Second, in a fully-serial implementation where P = 1, the latency of SSC decoding scales as O(N log2 log2 N). The multiplicative constant is also calculated: we show that the latency of SSC decoding when P = 1 is given by (2 + o(1))N log2 log2 N. Third, in a semi-parallel implementation, the smallest P that gives the same latency as that of the fully-parallel implementation is P = N1/μ. The tightness of our bound on SSC decoding latency and the applicability of the foregoing results is validated through extensive simulations.","lang":"eng"}],"issue":"6","doi":"10.1109/TWC.2021.3125626","publication_identifier":{"eissn":["1558-2248"],"issn":["1536-1276"]},"project":[{"_id":"059876FA-7A3F-11EA-A408-12923DDC885E","name":"Prix Lopez-Loretta 2019 - Marco Mondelli"}],"publication_status":"published","acknowledgement":"S. A. Hashemi is supported by a Postdoctoral Fellowship from the Natural Sciences and\r\nEngineering Research Council of Canada (NSERC) and by Huawei. M. Mondelli is partially\r\nsupported by the 2019 Lopez-Loreta Prize. A. Fazeli and A. Vardy were supported in part by\r\nthe National Science Foundation under Grant CCF-1764104.","status":"public","citation":{"apa":"Hashemi, S. A., Mondelli, M., Fazeli, A., Vardy, A., Cioffi, J., & Goldsmith, A. (2022). Parallelism versus latency in simplified successive-cancellation decoding of polar codes. IEEE Transactions on Wireless Communications. Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/TWC.2021.3125626","ieee":"S. A. Hashemi, M. Mondelli, A. Fazeli, A. Vardy, J. Cioffi, and A. Goldsmith, “Parallelism versus latency in simplified successive-cancellation decoding of polar codes,” IEEE Transactions on Wireless Communications, vol. 21, no. 6. Institute of Electrical and Electronics Engineers, pp. 3909–3920, 2022.","ama":"Hashemi SA, Mondelli M, Fazeli A, Vardy A, Cioffi J, Goldsmith A. Parallelism versus latency in simplified successive-cancellation decoding of polar codes. IEEE Transactions on Wireless Communications. 2022;21(6):3909-3920. doi:10.1109/TWC.2021.3125626","ista":"Hashemi SA, Mondelli M, Fazeli A, Vardy A, Cioffi J, Goldsmith A. 2022. Parallelism versus latency in simplified successive-cancellation decoding of polar codes. IEEE Transactions on Wireless Communications. 21(6), 3909–3920.","short":"S.A. Hashemi, M. Mondelli, A. Fazeli, A. Vardy, J. Cioffi, A. Goldsmith, IEEE Transactions on Wireless Communications 21 (2022) 3909–3920.","chicago":"Hashemi, Seyyed Ali, Marco Mondelli, Arman Fazeli, Alexander Vardy, John Cioffi, and Andrea Goldsmith. “Parallelism versus Latency in Simplified Successive-Cancellation Decoding of Polar Codes.” IEEE Transactions on Wireless Communications. Institute of Electrical and Electronics Engineers, 2022. https://doi.org/10.1109/TWC.2021.3125626.","mla":"Hashemi, Seyyed Ali, et al. “Parallelism versus Latency in Simplified Successive-Cancellation Decoding of Polar Codes.” IEEE Transactions on Wireless Communications, vol. 21, no. 6, Institute of Electrical and Electronics Engineers, 2022, pp. 3909–20, doi:10.1109/TWC.2021.3125626."},"day":"01","month":"06","oa_version":"Preprint","arxiv":1,"volume":21,"article_processing_charge":"No"},{"oa":1,"year":"2022","publication":"Trends in Plant Science","date_updated":"2024-10-29T10:12:33Z","related_material":{"record":[{"id":"11626","status":"public","relation":"dissertation_contains"}]},"article_type":"original","page":"440-449","department":[{"_id":"JiFr"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"pmid":["34848141"],"isi":["000793707900005"]},"date_published":"2022-05-01T00:00:00Z","scopus_import":"1","date_created":"2021-12-05T23:01:43Z","intvolume":" 27","publisher":"Cell Press","isi":1,"type":"journal_article","language":[{"iso":"eng"}],"quality_controlled":"1","author":[{"id":"367EF8FA-F248-11E8-B48F-1D18A9856A87","first_name":"Lanxin","full_name":"Li, Lanxin","last_name":"Li","orcid":"0000-0002-5607-272X"},{"id":"35A03822-F248-11E8-B48F-1D18A9856A87","first_name":"Michelle C","full_name":"Gallei, Michelle C","last_name":"Gallei","orcid":"0000-0003-1286-7368"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiří","full_name":"Friml, Jiří","last_name":"Friml","orcid":"0000-0002-8302-7596"}],"title":"Bending to auxin: Fast acid growth for tropisms","_id":"10411","issue":"5","abstract":[{"lang":"eng","text":"The phytohormone auxin is the major growth regulator governing tropic responses including gravitropism. Auxin build-up at the lower side of stimulated shoots promotes cell expansion, whereas in roots it inhibits growth, leading to upward shoot bending and downward root bending, respectively. Yet it remains an enigma how the same signal can trigger such opposite cellular responses. In this review, we discuss several recent unexpected insights into the mechanisms underlying auxin regulation of growth, challenging several existing models. We focus on the divergent mechanisms of apoplastic pH regulation in shoots and roots revisiting the classical Acid Growth Theory and discuss coordinated involvement of multiple auxin signaling pathways. From this emerges a more comprehensive, updated picture how auxin regulates growth."}],"doi":"10.1016/j.tplants.2021.11.006","publication_identifier":{"issn":["1360-1385"]},"project":[{"call_identifier":"FWF","name":"Molecular mechanisms of endocytic cargo recognition in plants","grant_number":"I03630","_id":"26538374-B435-11E9-9278-68D0E5697425"},{"grant_number":"25351","_id":"26B4D67E-B435-11E9-9278-68D0E5697425","name":"A Case Study of Plant Growth Regulation: Molecular Mechanism of Auxin-mediated Rapid Growth Inhibition in Arabidopsis Root"}],"status":"public","acknowledgement":"The authors thank Alexandra Mally for editing the text. This work was supported by the Austrian Science Fund (FWF) I 3630-B25 to Jiří Friml and the DOC Fellowship of the Austrian Academy of Sciences to Lanxin Li. All figures were created with BioRender.com.","publication_status":"published","day":"01","citation":{"mla":"Li, Lanxin, et al. “Bending to Auxin: Fast Acid Growth for Tropisms.” Trends in Plant Science, vol. 27, no. 5, Cell Press, 2022, pp. 440–49, doi:10.1016/j.tplants.2021.11.006.","chicago":"Li, Lanxin, Michelle C Gallei, and Jiří Friml. “Bending to Auxin: Fast Acid Growth for Tropisms.” Trends in Plant Science. Cell Press, 2022. https://doi.org/10.1016/j.tplants.2021.11.006.","short":"L. Li, M.C. Gallei, J. Friml, Trends in Plant Science 27 (2022) 440–449.","ama":"Li L, Gallei MC, Friml J. Bending to auxin: Fast acid growth for tropisms. Trends in Plant Science. 2022;27(5):440-449. doi:10.1016/j.tplants.2021.11.006","ista":"Li L, Gallei MC, Friml J. 2022. Bending to auxin: Fast acid growth for tropisms. Trends in Plant Science. 27(5), 440–449.","ieee":"L. Li, M. C. Gallei, and J. Friml, “Bending to auxin: Fast acid growth for tropisms,” Trends in Plant Science, vol. 27, no. 5. Cell Press, pp. 440–449, 2022.","apa":"Li, L., Gallei, M. C., & Friml, J. (2022). Bending to auxin: Fast acid growth for tropisms. Trends in Plant Science. Cell Press. https://doi.org/10.1016/j.tplants.2021.11.006"},"pmid":1,"month":"05","ddc":["580"],"file_date_updated":"2023-11-02T17:00:03Z","oa_version":"Submitted Version","file":[{"date_created":"2023-11-02T17:00:03Z","file_id":"14480","file_size":805779,"creator":"amally","relation":"main_file","file_name":"Li Plants 2021_accepted.pdf","content_type":"application/pdf","checksum":"3d94980ee1ff6bec100dd813f6a921a6","access_level":"open_access","date_updated":"2023-11-02T17:00:03Z","success":1}],"has_accepted_license":"1","volume":27,"article_processing_charge":"No"},{"publication":"Topology and its Applications","date_updated":"2023-08-02T13:33:24Z","article_number":"107916","article_type":"original","year":"2022","publisher":"Elsevier","intvolume":" 309","isi":1,"quality_controlled":"1","type":"journal_article","language":[{"iso":"eng"}],"department":[{"_id":"HeEd"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000791838800012"]},"date_published":"2022-03-15T00:00:00Z","date_created":"2021-12-05T23:01:44Z","scopus_import":"1","publication_identifier":{"issn":["0166-8641"]},"acknowledgement":"Dedicated to the memory of Hans-Peter Künzi.","status":"public","publication_status":"published","title":"Generalized quasi-metric semilattices","author":[{"full_name":"Dikranjan, Dikran","last_name":"Dikranjan","first_name":"Dikran"},{"first_name":"Anna","full_name":"Giordano Bruno, Anna","last_name":"Giordano Bruno"},{"first_name":"Hans Peter","full_name":"Künzi, Hans Peter","last_name":"Künzi"},{"full_name":"Zava, Nicolò","last_name":"Zava","id":"c8b3499c-7a77-11eb-b046-aa368cbbf2ad","first_name":"Nicolò","orcid":"0000-0001-8686-1888"},{"first_name":"Daniele","last_name":"Toller","full_name":"Toller, Daniele"}],"_id":"10413","abstract":[{"text":"Motivated by the recent introduction of the intrinsic semilattice entropy, we study generalized quasi-metric semilattices and their categories. We investigate the relationship between these objects and generalized semivaluations, extending Nakamura and Schellekens' approach. Finally, we use this correspondence to compare the intrinsic semilattice entropy and the semigroup entropy induced in particular situations, like sets, torsion abelian groups and vector spaces.","lang":"eng"}],"doi":"10.1016/j.topol.2021.107916","volume":309,"article_processing_charge":"No","citation":{"ieee":"D. Dikranjan, A. Giordano Bruno, H. P. Künzi, N. Zava, and D. Toller, “Generalized quasi-metric semilattices,” Topology and its Applications, vol. 309. Elsevier, 2022.","apa":"Dikranjan, D., Giordano Bruno, A., Künzi, H. P., Zava, N., & Toller, D. (2022). Generalized quasi-metric semilattices. Topology and Its Applications. Elsevier. https://doi.org/10.1016/j.topol.2021.107916","ama":"Dikranjan D, Giordano Bruno A, Künzi HP, Zava N, Toller D. Generalized quasi-metric semilattices. Topology and its Applications. 2022;309. doi:10.1016/j.topol.2021.107916","short":"D. Dikranjan, A. Giordano Bruno, H.P. Künzi, N. Zava, D. Toller, Topology and Its Applications 309 (2022).","ista":"Dikranjan D, Giordano Bruno A, Künzi HP, Zava N, Toller D. 2022. Generalized quasi-metric semilattices. Topology and its Applications. 309, 107916.","mla":"Dikranjan, Dikran, et al. “Generalized Quasi-Metric Semilattices.” Topology and Its Applications, vol. 309, 107916, Elsevier, 2022, doi:10.1016/j.topol.2021.107916.","chicago":"Dikranjan, Dikran, Anna Giordano Bruno, Hans Peter Künzi, Nicolò Zava, and Daniele Toller. “Generalized Quasi-Metric Semilattices.” Topology and Its Applications. Elsevier, 2022. https://doi.org/10.1016/j.topol.2021.107916."},"day":"15","month":"03","oa_version":"None"},{"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"EdHa"},{"_id":"GaTk"}],"date_created":"2021-12-10T09:48:19Z","date_published":"2022-01-04T00:00:00Z","external_id":{"isi":["000740815400007"]},"intvolume":" 121","publisher":"Elsevier","quality_controlled":"1","type":"journal_article","language":[{"iso":"eng"}],"isi":1,"oa":1,"keyword":["Biophysics"],"year":"2022","date_updated":"2023-08-02T13:34:25Z","publication":"Biophysical Journal","article_type":"original","page":"P44-60","month":"01","ddc":["570"],"file_date_updated":"2022-07-29T10:17:10Z","day":"04","citation":{"apa":"Zisis, T., Brückner, D., Brandstätter, T., Siow, W. X., d’Alessandro, J., Vollmar, A. M., … Zahler, S. (2022). Disentangling cadherin-mediated cell-cell interactions in collective cancer cell migration. Biophysical Journal. Elsevier. https://doi.org/10.1016/j.bpj.2021.12.006","ieee":"T. Zisis et al., “Disentangling cadherin-mediated cell-cell interactions in collective cancer cell migration,” Biophysical Journal, vol. 121, no. 1. Elsevier, pp. P44-60, 2022.","ama":"Zisis T, Brückner D, Brandstätter T, et al. Disentangling cadherin-mediated cell-cell interactions in collective cancer cell migration. Biophysical Journal. 2022;121(1):P44-60. doi:10.1016/j.bpj.2021.12.006","short":"T. Zisis, D. Brückner, T. Brandstätter, W.X. Siow, J. d’Alessandro, A.M. Vollmar, C.P. Broedersz, S. Zahler, Biophysical Journal 121 (2022) P44-60.","ista":"Zisis T, Brückner D, Brandstätter T, Siow WX, d’Alessandro J, Vollmar AM, Broedersz CP, Zahler S. 2022. Disentangling cadherin-mediated cell-cell interactions in collective cancer cell migration. Biophysical Journal. 121(1), P44-60.","mla":"Zisis, Themistoklis, et al. “Disentangling Cadherin-Mediated Cell-Cell Interactions in Collective Cancer Cell Migration.” Biophysical Journal, vol. 121, no. 1, Elsevier, 2022, pp. P44-60, doi:10.1016/j.bpj.2021.12.006.","chicago":"Zisis, Themistoklis, David Brückner, Tom Brandstätter, Wei Xiong Siow, Joseph d’Alessandro, Angelika M. Vollmar, Chase P. Broedersz, and Stefan Zahler. “Disentangling Cadherin-Mediated Cell-Cell Interactions in Collective Cancer Cell Migration.” Biophysical Journal. Elsevier, 2022. https://doi.org/10.1016/j.bpj.2021.12.006."},"oa_version":"Published Version","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","file":[{"date_created":"2022-07-29T10:17:10Z","file_id":"11697","creator":"dernst","relation":"main_file","file_size":4475504,"file_name":"2022_BiophysicalJour_Zisis.pdf","checksum":"1aa7c3478e0c8256b973b632efd1f6b4","content_type":"application/pdf","access_level":"open_access","date_updated":"2022-07-29T10:17:10Z","success":1}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"volume":121,"article_processing_charge":"No","has_accepted_license":"1","_id":"10530","author":[{"last_name":"Zisis","full_name":"Zisis, Themistoklis","first_name":"Themistoklis"},{"orcid":"0000-0001-7205-2975","last_name":"Brückner","full_name":"Brückner, David","first_name":"David","id":"e1e86031-6537-11eb-953a-f7ab92be508d"},{"full_name":"Brandstätter, Tom","last_name":"Brandstätter","first_name":"Tom"},{"last_name":"Siow","full_name":"Siow, Wei Xiong","first_name":"Wei Xiong"},{"first_name":"Joseph","last_name":"d’Alessandro","full_name":"d’Alessandro, Joseph"},{"first_name":"Angelika M.","last_name":"Vollmar","full_name":"Vollmar, Angelika M."},{"full_name":"Broedersz, Chase P.","last_name":"Broedersz","first_name":"Chase P."},{"last_name":"Zahler","full_name":"Zahler, Stefan","first_name":"Stefan"}],"title":"Disentangling cadherin-mediated cell-cell interactions in collective cancer cell migration","doi":"10.1016/j.bpj.2021.12.006","issue":"1","abstract":[{"lang":"eng","text":"Cell dispersion from a confined area is fundamental in a number of biological processes,\r\nincluding cancer metastasis. To date, a quantitative understanding of the interplay of single\r\ncell motility, cell proliferation, and intercellular contacts remains elusive. In particular, the role\r\nof E- and N-Cadherin junctions, central components of intercellular contacts, is still\r\ncontroversial. Combining theoretical modeling with in vitro observations, we investigate the\r\ncollective spreading behavior of colonies of human cancer cells (T24). The spreading of these\r\ncolonies is driven by stochastic single-cell migration with frequent transient cell-cell contacts.\r\nWe find that inhibition of E- and N-Cadherin junctions decreases colony spreading and average\r\nspreading velocities, without affecting the strength of correlations in spreading velocities of\r\nneighboring cells. Based on a biophysical simulation model for cell migration, we show that the\r\nbehavioral changes upon disruption of these junctions can be explained by reduced repulsive\r\nexcluded volume interactions between cells. This suggests that in cancer cell migration,\r\ncadherin-based intercellular contacts sharpen cell boundaries leading to repulsive rather than\r\ncohesive interactions between cells, thereby promoting efficient cell spreading during collective\r\nmigration.\r\n"}],"project":[{"_id":"9B861AAC-BA93-11EA-9121-9846C619BF3A","name":"NOMIS Fellowship Program"}],"publication_identifier":{"issn":["0006-3495"]},"status":"public","publication_status":"published","acknowledgement":"Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - Project-ID 201269156 - SFB 1032 (Projects B8 and B12). D.B.B. is supported in part by a DFG fellowship within the Graduate School of Quantitative Biosciences Munich (QBM) and by the Joachim Herz Stiftung."},{"external_id":{"arxiv":["2012.03792 "],"isi":["000762768000006"]},"date_published":"2022-01-04T00:00:00Z","scopus_import":"1","date_created":"2021-12-16T12:08:56Z","department":[{"_id":"JuFi"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","isi":1,"language":[{"iso":"eng"}],"type":"journal_article","quality_controlled":"1","main_file_link":[{"url":"https://arxiv.org/abs/2012.03792","open_access":"1"}],"intvolume":" 54","publisher":"Society for Industrial and Applied Mathematics","year":"2022","keyword":["Energy-Reaction-Diffusion Systems","Cross Diffusion","Global-In-Time Existence of Weak/Renormalised Solutions","Entropy Method","Onsager System","Soret/Dufour Effect"],"oa":1,"article_type":"original","page":"220-267","publication":"SIAM Journal on Mathematical Analysis","date_updated":"2023-08-02T13:37:03Z","oa_version":"Preprint","day":"04","citation":{"mla":"Fischer, Julian L., et al. “Global Existence Analysis of Energy-Reaction-Diffusion Systems.” SIAM Journal on Mathematical Analysis, vol. 54, no. 1, Society for Industrial and Applied Mathematics, 2022, pp. 220–67, doi:10.1137/20M1387237.","chicago":"Fischer, Julian L, Katharina Hopf, Michael Kniely, and Alexander Mielke. “Global Existence Analysis of Energy-Reaction-Diffusion Systems.” SIAM Journal on Mathematical Analysis. Society for Industrial and Applied Mathematics, 2022. https://doi.org/10.1137/20M1387237.","ieee":"J. L. Fischer, K. Hopf, M. Kniely, and A. Mielke, “Global existence analysis of energy-reaction-diffusion systems,” SIAM Journal on Mathematical Analysis, vol. 54, no. 1. Society for Industrial and Applied Mathematics, pp. 220–267, 2022.","apa":"Fischer, J. L., Hopf, K., Kniely, M., & Mielke, A. (2022). Global existence analysis of energy-reaction-diffusion systems. SIAM Journal on Mathematical Analysis. Society for Industrial and Applied Mathematics. https://doi.org/10.1137/20M1387237","ama":"Fischer JL, Hopf K, Kniely M, Mielke A. Global existence analysis of energy-reaction-diffusion systems. SIAM Journal on Mathematical Analysis. 2022;54(1):220-267. doi:10.1137/20M1387237","short":"J.L. Fischer, K. Hopf, M. Kniely, A. Mielke, SIAM Journal on Mathematical Analysis 54 (2022) 220–267.","ista":"Fischer JL, Hopf K, Kniely M, Mielke A. 2022. Global existence analysis of energy-reaction-diffusion systems. SIAM Journal on Mathematical Analysis. 54(1), 220–267."},"month":"01","volume":54,"article_processing_charge":"No","arxiv":1,"issue":"1","abstract":[{"text":"We establish global-in-time existence results for thermodynamically consistent reaction-(cross-)diffusion systems coupled to an equation describing heat transfer. Our main interest is to model species-dependent diffusivities,\r\nwhile at the same time ensuring thermodynamic consistency. A key difficulty of the non-isothermal case lies in the intrinsic presence of cross-diffusion type phenomena like the Soret and the Dufour effect: due to the temperature/energy dependence of the thermodynamic equilibria, a nonvanishing temperature gradient may drive a concentration flux even in a situation with constant concentrations; likewise, a nonvanishing concentration gradient may drive a heat flux even in a case of spatially constant temperature. We use time discretisation and regularisation techniques and derive a priori estimates based on a suitable entropy and the associated entropy production. Renormalised solutions are used in cases where non-integrable diffusion fluxes or reaction terms appear.","lang":"eng"}],"doi":"10.1137/20M1387237","author":[{"orcid":"0000-0002-0479-558X","full_name":"Fischer, Julian L","last_name":"Fischer","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","first_name":"Julian L"},{"first_name":"Katharina","last_name":"Hopf","full_name":"Hopf, Katharina"},{"first_name":"Michael","id":"2CA2C08C-F248-11E8-B48F-1D18A9856A87","last_name":"Kniely","full_name":"Kniely, Michael","orcid":"0000-0001-5645-4333"},{"first_name":"Alexander","last_name":"Mielke","full_name":"Mielke, Alexander"}],"title":"Global existence analysis of energy-reaction-diffusion systems","_id":"10547","publication_status":"published","status":"public","acknowledgement":"M.K. gratefully acknowledges the hospitality of WIAS Berlin, where a major part of the project was carried out. The research stay of M.K. at WIAS Berlin was funded by the Austrian Federal Ministry of Education, Science and Research through a research fellowship for graduates of a promotio sub auspiciis. The research of A.M. has been partially supported by Deutsche Forschungsgemeinschaft (DFG) through the Collaborative Research Center SFB 1114 “Scaling Cascades in Complex Systems” (Project no. 235221301), Subproject C05 “Effective models for materials and interfaces with multiple scales”. J.F. and A.M. are grateful for the hospitality of the Erwin Schrödinger Institute in Vienna, where some ideas for this work have been developed. The authors are grateful to two anonymous referees for several helpful comments, in particular for the short proof of estimate (2.7).","publication_identifier":{"issn":["0036-1410"]}},{"date_published":"2022-04-28T00:00:00Z","external_id":{"isi":["000791003700011"],"arxiv":["1910.04088"]},"date_created":"2021-12-16T12:10:16Z","scopus_import":"1","department":[{"_id":"JuFi"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","isi":1,"language":[{"iso":"eng"}],"type":"journal_article","quality_controlled":"1","publisher":"Institute of Mathematical Statistics","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1910.04088"}],"intvolume":" 32","year":"2022","oa":1,"page":"1179-1209","article_type":"original","publication":"Annals of applied probability","date_updated":"2023-08-02T13:35:06Z","oa_version":"Preprint","citation":{"ista":"Duerinckx M, Fischer JL, Gloria A. 2022. Scaling limit of the homogenization commutator for Gaussian coefficient fields. Annals of applied probability. 32(2), 1179–1209.","ama":"Duerinckx M, Fischer JL, Gloria A. Scaling limit of the homogenization commutator for Gaussian coefficient fields. Annals of applied probability. 2022;32(2):1179-1209. doi:10.1214/21-AAP1705","short":"M. Duerinckx, J.L. Fischer, A. Gloria, Annals of Applied Probability 32 (2022) 1179–1209.","ieee":"M. Duerinckx, J. L. Fischer, and A. Gloria, “Scaling limit of the homogenization commutator for Gaussian coefficient fields,” Annals of applied probability, vol. 32, no. 2. Institute of Mathematical Statistics, pp. 1179–1209, 2022.","apa":"Duerinckx, M., Fischer, J. L., & Gloria, A. (2022). Scaling limit of the homogenization commutator for Gaussian coefficient fields. Annals of Applied Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/21-AAP1705","mla":"Duerinckx, Mitia, et al. “Scaling Limit of the Homogenization Commutator for Gaussian Coefficient Fields.” Annals of Applied Probability, vol. 32, no. 2, Institute of Mathematical Statistics, 2022, pp. 1179–209, doi:10.1214/21-AAP1705.","chicago":"Duerinckx, Mitia, Julian L Fischer, and Antoine Gloria. “Scaling Limit of the Homogenization Commutator for Gaussian Coefficient Fields.” Annals of Applied Probability. Institute of Mathematical Statistics, 2022. https://doi.org/10.1214/21-AAP1705."},"day":"28","month":"04","article_processing_charge":"No","volume":32,"arxiv":1,"abstract":[{"lang":"eng","text":"Consider a linear elliptic partial differential equation in divergence form with a random coefficient field. The solution operator displays fluctuations around its expectation. The recently developed pathwise theory of fluctuations in stochastic homogenization reduces the characterization of these fluctuations to those of the so-called standard homogenization commutator. In this contribution, we investigate the scaling limit of this key quantity: starting\r\nfrom a Gaussian-like coefficient field with possibly strong correlations, we establish the convergence of the rescaled commutator to a fractional Gaussian field, depending on the decay of correlations of the coefficient field, and we\r\ninvestigate the (non)degeneracy of the limit. This extends to general dimension $d\\ge1$ previous results so far limited to dimension $d=1$, and to the continuum setting with strong correlations recent results in the discrete iid case."}],"issue":"2","doi":"10.1214/21-AAP1705","title":"Scaling limit of the homogenization commutator for Gaussian coefficient fields","author":[{"first_name":"Mitia","full_name":"Duerinckx, Mitia","last_name":"Duerinckx"},{"orcid":"0000-0002-0479-558X","first_name":"Julian L","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","last_name":"Fischer","full_name":"Fischer, Julian L"},{"full_name":"Gloria, Antoine","last_name":"Gloria","first_name":"Antoine"}],"_id":"10548","acknowledgement":"The authors thank Ivan Nourdin and Felix Otto for inspiring discussions. The work of MD is financially supported by the CNRS-Momentum program. Financial support of AG is acknowledged from the European Research Council under the European Community’s Seventh Framework Programme (FP7/2014-2019 Grant Agreement QUANTHOM 335410).","publication_status":"published","status":"public","publication_identifier":{"issn":["1050-5164"]}},{"license":"https://creativecommons.org/licenses/by/4.0/","oa_version":"Published Version","citation":{"mla":"Mysliwy, Krzysztof, and Robert Seiringer. “Polaron Models with Regular Interactions at Strong Coupling.” Journal of Statistical Physics, vol. 186, no. 1, 5, Springer Nature, 2022, doi:10.1007/s10955-021-02851-w.","chicago":"Mysliwy, Krzysztof, and Robert Seiringer. “Polaron Models with Regular Interactions at Strong Coupling.” Journal of Statistical Physics. Springer Nature, 2022. https://doi.org/10.1007/s10955-021-02851-w.","ama":"Mysliwy K, Seiringer R. Polaron models with regular interactions at strong coupling. Journal of Statistical Physics. 2022;186(1). doi:10.1007/s10955-021-02851-w","short":"K. Mysliwy, R. Seiringer, Journal of Statistical Physics 186 (2022).","ista":"Mysliwy K, Seiringer R. 2022. Polaron models with regular interactions at strong coupling. Journal of Statistical Physics. 186(1), 5.","apa":"Mysliwy, K., & Seiringer, R. (2022). Polaron models with regular interactions at strong coupling. Journal of Statistical Physics. Springer Nature. https://doi.org/10.1007/s10955-021-02851-w","ieee":"K. Mysliwy and R. Seiringer, “Polaron models with regular interactions at strong coupling,” Journal of Statistical Physics, vol. 186, no. 1. Springer Nature, 2022."},"day":"01","ddc":["530"],"file_date_updated":"2022-02-02T14:24:41Z","month":"01","has_accepted_license":"1","volume":186,"article_processing_charge":"Yes (via OA deal)","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"arxiv":1,"file":[{"file_id":"10716","date_created":"2022-02-02T14:24:41Z","file_name":"2022_JournalStatPhys_Myśliwy.pdf","creator":"cchlebak","relation":"main_file","file_size":434957,"success":1,"date_updated":"2022-02-02T14:24:41Z","access_level":"open_access","checksum":"da03f6d293c4b9802091bce9471b1d29","content_type":"application/pdf"}],"abstract":[{"text":"We study a class of polaron-type Hamiltonians with sufficiently regular form factor in the interaction term. We investigate the strong-coupling limit of the model, and prove suitable bounds on the ground state energy as a function of the total momentum of the system. These bounds agree with the semiclassical approximation to leading order. The latter corresponds here to the situation when the particle undergoes harmonic motion in a potential well whose frequency is determined by the corresponding Pekar functional. We show that for all such models the effective mass diverges in the strong coupling limit, in all spatial dimensions. Moreover, for the case when the phonon dispersion relation grows at least linearly with momentum, the bounds result in an asymptotic formula for the effective mass quotient, a quantity generalizing the usual notion of the effective mass. This asymptotic form agrees with the semiclassical Landau–Pekar formula and can be regarded as the first rigorous confirmation, in a slightly weaker sense than usually considered, of the validity of the semiclassical formula for the effective mass.","lang":"eng"}],"issue":"1","doi":"10.1007/s10955-021-02851-w","title":"Polaron models with regular interactions at strong coupling","author":[{"full_name":"Mysliwy, Krzysztof","last_name":"Mysliwy","id":"316457FC-F248-11E8-B48F-1D18A9856A87","first_name":"Krzysztof"},{"first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","last_name":"Seiringer","full_name":"Seiringer, Robert","orcid":"0000-0002-6781-0521"}],"_id":"10564","publication_status":"published","status":"public","acknowledgement":"Financial support through the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme Grant Agreement No. 694227 (R.S.) and the Maria Skłodowska-Curie Grant Agreement No. 665386 (K.M.) is gratefully acknowledged. Open access funding provided by Institute of Science and Technology (IST Austria).","ec_funded":1,"publication_identifier":{"eissn":["1572-9613"],"issn":["0022-4715"]},"project":[{"call_identifier":"H2020","name":"Analysis of quantum many-body systems","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","grant_number":"694227"},{"name":"International IST Doctoral Program","call_identifier":"H2020","grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"date_published":"2022-01-01T00:00:00Z","external_id":{"arxiv":["2106.09328"],"isi":["000726275600001"]},"date_created":"2021-12-19T23:01:32Z","scopus_import":"1","department":[{"_id":"RoSe"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","isi":1,"type":"journal_article","language":[{"iso":"eng"}],"quality_controlled":"1","publisher":"Springer Nature","intvolume":" 186","year":"2022","oa":1,"related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"11473"}]},"article_number":"5","article_type":"original","publication":"Journal of Statistical Physics","date_updated":"2023-09-07T13:43:51Z"},{"article_number":"133837","article_type":"original","date_updated":"2023-10-03T10:14:34Z","publication":"Chemical Engineering Journal","year":"2022","oa":1,"language":[{"iso":"eng"}],"type":"journal_article","quality_controlled":"1","isi":1,"publisher":"Elsevier","main_file_link":[{"open_access":"1","url":"https://ddd.uab.cat/pub/artpub/2022/270830/10.1016j.cej.2021.133837.pdf"}],"intvolume":" 433","date_created":"2021-12-19T23:01:33Z","scopus_import":"1","date_published":"2022-04-01T00:00:00Z","external_id":{"isi":["000773425200006"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"MaIb"}],"ec_funded":1,"publication_status":"published","status":"public","acknowledgement":"This work was supported by the European Regional Development Funds. MYL, YZ, DWY and KX thank the China Scholarship Council for scholarship support. YL acknowledges funding from the European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 754411 and the funding for scientific research startup of Hefei University of Technology (No. 13020-03712021049). MI acknowledges funding from IST Austria and the Werner Siemens Foundation. CC acknowledges funding from the FWF “Lise Meitner Fellowship” grant agreement M 2889-N. TZ has received funding from the CSC-UAB PhD scholarship program. ICN2 acknowledges funding from Generalitat de Catalunya 2017 SGR 327. ICN2 thanks support from the project NANOGEN (PID2020-116093RB-C43), funded by MCIN/ AEI/10.13039/501100011033/. ICN2 is supported by the Severo Ochoa program from Spanish MINECO (Grant No. SEV-2017-0706) and is funded by the CERCA Programme / Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat Autònoma de Barcelona Materials Science PhD program.","project":[{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"name":"Bottom-up Engineering for Thermoelectric Applications","_id":"9B8804FC-BA93-11EA-9121-9846C619BF3A","grant_number":"M02889"},{"_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A","name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery"}],"publication_identifier":{"issn":["1385-8947"]},"doi":"10.1016/j.cej.2021.133837","abstract":[{"text":"A versatile, scalable, room temperature and surfactant-free route for the synthesis of metal chalcogenide nanoparticles in aqueous solution is detailed here for the production of PbS and Cu-doped PbS nanoparticles. Subsequently, nanoparticles are annealed in a reducing atmosphere to remove surface oxide, and consolidated into dense polycrystalline materials by means of spark plasma sintering. By characterizing the transport properties of the sintered material, we observe the annealing step and the incorporation of Cu to play a key role in promoting the thermoelectric performance of PbS. The presence of Cu allows improving the electrical conductivity by increasing the charge carrier concentration and simultaneously maintaining a large charge carrier mobility, which overall translates into record power factors at ambient temperature, 2.3 mWm-1K−2. Simultaneously, the lattice thermal conductivity decreases with the introduction of Cu, leading to a record high ZT = 0.37 at room temperature and ZT = 1.22 at 773 K. Besides, a record average ZTave = 0.76 is demonstrated in the temperature range 320–773 K for n-type Pb0.955Cu0.045S.","lang":"eng"}],"_id":"10566","title":"Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application","author":[{"full_name":"Li, Mengyao","last_name":"Li","first_name":"Mengyao"},{"full_name":"Liu, Yu","last_name":"Liu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","first_name":"Yu","orcid":"0000-0001-7313-6740"},{"last_name":"Zhang","full_name":"Zhang, Yu","first_name":"Yu"},{"orcid":"0000-0002-9515-4277","full_name":"Chang, Cheng","last_name":"Chang","id":"9E331C2E-9F27-11E9-AE48-5033E6697425","first_name":"Cheng"},{"first_name":"Ting","full_name":"Zhang, Ting","last_name":"Zhang"},{"last_name":"Yang","full_name":"Yang, Dawei","first_name":"Dawei"},{"first_name":"Ke","last_name":"Xiao","full_name":"Xiao, Ke"},{"first_name":"Jordi","last_name":"Arbiol","full_name":"Arbiol, Jordi"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","full_name":"Ibáñez, Maria","last_name":"Ibáñez","orcid":"0000-0001-5013-2843"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"}],"article_processing_charge":"No","volume":433,"oa_version":"Submitted Version","month":"04","citation":{"ieee":"M. Li et al., “Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application,” Chemical Engineering Journal, vol. 433. Elsevier, 2022.","apa":"Li, M., Liu, Y., Zhang, Y., Chang, C., Zhang, T., Yang, D., … Cabot, A. (2022). Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application. Chemical Engineering Journal. Elsevier. https://doi.org/10.1016/j.cej.2021.133837","short":"M. Li, Y. Liu, Y. Zhang, C. Chang, T. Zhang, D. Yang, K. Xiao, J. Arbiol, M. Ibáñez, A. Cabot, Chemical Engineering Journal 433 (2022).","ista":"Li M, Liu Y, Zhang Y, Chang C, Zhang T, Yang D, Xiao K, Arbiol J, Ibáñez M, Cabot A. 2022. Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application. Chemical Engineering Journal. 433, 133837.","ama":"Li M, Liu Y, Zhang Y, et al. Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application. Chemical Engineering Journal. 2022;433. doi:10.1016/j.cej.2021.133837","chicago":"Li, Mengyao, Yu Liu, Yu Zhang, Cheng Chang, Ting Zhang, Dawei Yang, Ke Xiao, Jordi Arbiol, Maria Ibáñez, and Andreu Cabot. “Room Temperature Aqueous-Based Synthesis of Copper-Doped Lead Sulfide Nanoparticles for Thermoelectric Application.” Chemical Engineering Journal. Elsevier, 2022. https://doi.org/10.1016/j.cej.2021.133837.","mla":"Li, Mengyao, et al. “Room Temperature Aqueous-Based Synthesis of Copper-Doped Lead Sulfide Nanoparticles for Thermoelectric Application.” Chemical Engineering Journal, vol. 433, 133837, Elsevier, 2022, doi:10.1016/j.cej.2021.133837."},"day":"01"},{"article_type":"original","page":"104-119","publication":"Plant & Cell Physiology","date_updated":"2023-08-02T13:40:43Z","year":"2022","keyword":["flavonols","MAX2","rac-Gr24","RNA-seq","root development","transcriptional regulation"],"oa":1,"isi":1,"language":[{"iso":"eng"}],"type":"journal_article","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1093/pcp/pcab149"}],"intvolume":" 63","publisher":"Oxford University Press","date_published":"2022-01-21T00:00:00Z","external_id":{"pmid":["34791413"],"isi":["000877899400009"]},"scopus_import":"1","date_created":"2021-12-28T11:44:18Z","department":[{"_id":"JiFr"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","acknowledgement":"The authors thank Ralf Stracke (Bielefeld University, Bielefeld, Germany) for providing the myb mutants and their colleagues Bert De Rybel for the tmo5t;mo5l1 double mutant, Boris Parizot for tips on the RNA-seq analysis, Veronique Storme for statistical help on both the RNA-seq and lateral root density, and Martine De Cock for help in preparing the manuscript.","publication_status":"published","status":"public","publication_identifier":{"eissn":["1471-9053"],"issn":["0032-0781"]},"issue":"1","abstract":[{"text":"The synthetic strigolactone (SL) analog, rac-GR24, has been instrumental in studying the role of SLs as well as karrikins because it activates the receptors DWARF14 (D14) and KARRIKIN INSENSITIVE 2 (KAI2) of their signaling pathways, respectively. Treatment with rac-GR24 modifies the root architecture at different levels, such as decreasing the lateral root density (LRD), while promoting root hair elongation or flavonol accumulation. Previously, we have shown that the flavonol biosynthesis is transcriptionally activated in the root by rac-GR24 treatment, but, thus far, the molecular players involved in that response have remained unknown. To get an in-depth insight into the changes that occur after the compound is perceived by the roots, we compared the root transcriptomes of the wild type and the more axillary growth2 (max2) mutant, affected in both SL and karrikin signaling pathways, with and without rac-GR24 treatment. Quantitative reverse transcription (qRT)-PCR, reporter line analysis and mutant phenotyping indicated that the flavonol response and the root hair elongation are controlled by the ELONGATED HYPOCOTYL 5 (HY5) and MYB12 transcription factors, but HY5, in contrast to MYB12, affects the LRD as well. Furthermore, we identified the transcription factors TARGET OF MONOPTEROS 5 (TMO5) and TMO5 LIKE1 as negative and the Mediator complex as positive regulators of the rac-GR24 effect on LRD. Altogether, hereby, we get closer toward understanding the molecular mechanisms that underlay the rac-GR24 responses in the root.","lang":"eng"}],"doi":"10.1093/pcp/pcab149","author":[{"first_name":"Sylwia","last_name":"Struk","full_name":"Struk, Sylwia"},{"last_name":"Braem","full_name":"Braem, Lukas","first_name":"Lukas"},{"last_name":"Matthys","full_name":"Matthys, Cedrick","first_name":"Cedrick"},{"last_name":"Walton","full_name":"Walton, Alan","first_name":"Alan"},{"first_name":"Nick","full_name":"Vangheluwe, Nick","last_name":"Vangheluwe"},{"full_name":"Van Praet, Stan","last_name":"Van Praet","first_name":"Stan"},{"last_name":"Jiang","full_name":"Jiang, Lingxiang","first_name":"Lingxiang"},{"id":"3028BD74-F248-11E8-B48F-1D18A9856A87","first_name":"Pawel","full_name":"Baster, Pawel","last_name":"Baster"},{"first_name":"Carolien","full_name":"De Cuyper, Carolien","last_name":"De Cuyper"},{"first_name":"Francois-Didier","full_name":"Boyer, Francois-Didier","last_name":"Boyer"},{"last_name":"Stes","full_name":"Stes, Elisabeth","first_name":"Elisabeth"},{"last_name":"Beeckman","full_name":"Beeckman, Tom","first_name":"Tom"},{"first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596"},{"first_name":"Kris","full_name":"Gevaert, Kris","last_name":"Gevaert"},{"first_name":"Sofie","last_name":"Goormachtig","full_name":"Goormachtig, Sofie"}],"title":"Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density","_id":"10583","article_processing_charge":"No","volume":63,"oa_version":"Published Version","day":"21","citation":{"ama":"Struk S, Braem L, Matthys C, et al. Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density. Plant & Cell Physiology. 2022;63(1):104-119. doi:10.1093/pcp/pcab149","ista":"Struk S, Braem L, Matthys C, Walton A, Vangheluwe N, Van Praet S, Jiang L, Baster P, De Cuyper C, Boyer F-D, Stes E, Beeckman T, Friml J, Gevaert K, Goormachtig S. 2022. Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density. Plant & Cell Physiology. 63(1), 104–119.","short":"S. Struk, L. Braem, C. Matthys, A. Walton, N. Vangheluwe, S. Van Praet, L. Jiang, P. Baster, C. De Cuyper, F.-D. Boyer, E. Stes, T. Beeckman, J. Friml, K. Gevaert, S. Goormachtig, Plant & Cell Physiology 63 (2022) 104–119.","apa":"Struk, S., Braem, L., Matthys, C., Walton, A., Vangheluwe, N., Van Praet, S., … Goormachtig, S. (2022). Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density. Plant & Cell Physiology. Oxford University Press. https://doi.org/10.1093/pcp/pcab149","ieee":"S. Struk et al., “Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density,” Plant & Cell Physiology, vol. 63, no. 1. Oxford University Press, pp. 104–119, 2022.","mla":"Struk, Sylwia, et al. “Transcriptional Analysis in the Arabidopsis Roots Reveals New Regulators That Link Rac-GR24 Treatment with Changes in Flavonol Accumulation, Root Hair Elongation and Lateral Root Density.” Plant & Cell Physiology, vol. 63, no. 1, Oxford University Press, 2022, pp. 104–19, doi:10.1093/pcp/pcab149.","chicago":"Struk, Sylwia, Lukas Braem, Cedrick Matthys, Alan Walton, Nick Vangheluwe, Stan Van Praet, Lingxiang Jiang, et al. “Transcriptional Analysis in the Arabidopsis Roots Reveals New Regulators That Link Rac-GR24 Treatment with Changes in Flavonol Accumulation, Root Hair Elongation and Lateral Root Density.” Plant & Cell Physiology. Oxford University Press, 2022. https://doi.org/10.1093/pcp/pcab149."},"pmid":1,"month":"01"},{"file":[{"content_type":"application/pdf","checksum":"5d062cae3f1acb251cacb21021724c4e","access_level":"open_access","date_updated":"2022-01-03T13:43:01Z","success":1,"relation":"main_file","creator":"alisjak","file_size":5370675,"file_name":"2021_Micromachines_Singh.pdf","date_created":"2022-01-03T13:43:01Z","file_id":"10601"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"Yes","volume":13,"has_accepted_license":"1","month":"01","file_date_updated":"2022-01-03T13:43:01Z","ddc":["620"],"day":"01","citation":{"ieee":"J. S. Nirwan et al., “Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials,” Micromachines, vol. 13, no. 1. MDPI, 2022.","apa":"Nirwan, J. S., Lou, S., Hussain, S., Nauman, M., Hussain, T., Conway, B. R., & Ghori, M. U. (2022). Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials. Micromachines. MDPI. https://doi.org/10.3390/mi13010017","short":"J.S. Nirwan, S. Lou, S. Hussain, M. Nauman, T. Hussain, B.R. Conway, M.U. Ghori, Micromachines 13 (2022).","ista":"Nirwan JS, Lou S, Hussain S, Nauman M, Hussain T, Conway BR, Ghori MU. 2022. Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials. Micromachines. 13(1), 17.","ama":"Nirwan JS, Lou S, Hussain S, et al. Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials. Micromachines. 2022;13(1). doi:10.3390/mi13010017","mla":"Nirwan, Jorabar Singh, et al. “Electrically Tunable Lens (ETL) - Based Variable Focus Imaging System for Parametric Surface Texture Analysis of Materials.” Micromachines, vol. 13, no. 1, 17, MDPI, 2022, doi:10.3390/mi13010017.","chicago":"Nirwan, Jorabar Singh, Shan Lou, Saqib Hussain, Muhammad Nauman, Tariq Hussain, Barbara R. Conway, and Muhammad Usman Ghori. “Electrically Tunable Lens (ETL) - Based Variable Focus Imaging System for Parametric Surface Texture Analysis of Materials.” Micromachines. MDPI, 2022. https://doi.org/10.3390/mi13010017."},"oa_version":"Published Version","publication_identifier":{"eissn":["2072-666X"]},"publication_status":"published","acknowledgement":"The authors acknowledge the financial assistance provided by the University of Huddersfield.","status":"public","_id":"10584","author":[{"first_name":"Jorabar Singh","full_name":"Nirwan, Jorabar Singh","last_name":"Nirwan"},{"last_name":"Lou","full_name":"Lou, Shan","first_name":"Shan"},{"first_name":"Saqib","full_name":"Hussain, Saqib","last_name":"Hussain"},{"id":"32c21954-2022-11eb-9d5f-af9f93c24e71","first_name":"Muhammad","full_name":"Nauman, Muhammad","last_name":"Nauman","orcid":"0000-0002-2111-4846"},{"first_name":"Tariq","last_name":"Hussain","full_name":"Hussain, Tariq"},{"full_name":"Conway, Barbara R.","last_name":"Conway","first_name":"Barbara R."},{"first_name":"Muhammad Usman","last_name":"Ghori","full_name":"Ghori, Muhammad Usman"}],"title":"Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials","doi":"10.3390/mi13010017","issue":"1","abstract":[{"lang":"eng","text":"Electrically tunable lenses (ETLs) are those with the ability to alter their optical power in response to an electric signal. This feature allows such systems to not only image the areas of interest but also obtain spatial depth perception (depth of field, DOF). The aim of the present study was to develop an ETL-based imaging system for quantitative surface analysis. Firstly, the system was calibrated to achieve high depth resolution, warranting the accurate measurement of the depth and to account for and correct any influences from external factors on the ETL. This was completed using the Tenengrad operator which effectively identified the plane of best focus as demonstrated by the linear relationship between the control current applied to the ETL and the height at which the optical system focuses. The system was then employed to measure amplitude, spatial, hybrid, and volume surface texture parameters of a model material (pharmaceutical dosage form) which were validated against the parameters obtained using a previously validated surface texture analysis technique, optical profilometry. There were no statistically significant differences between the surface texture parameters measured by the techniques, highlighting the potential application of ETL-based imaging systems as an easily adaptable and low-cost alternative surface texture analysis technique to conventional microscopy techniques"}],"intvolume":" 13","publisher":"MDPI","quality_controlled":"1","language":[{"iso":"eng"}],"type":"journal_article","isi":1,"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"KiMo"}],"scopus_import":"1","date_created":"2022-01-02T23:01:33Z","external_id":{"isi":["000758547200001"]},"date_published":"2022-01-01T00:00:00Z","date_updated":"2023-08-09T10:16:10Z","publication":"Micromachines","article_type":"original","article_number":"17","oa":1,"keyword":["surface texture","electrically tunable lens","materials","hypromellose","surface topography","surface roughness","pharmaceutical tablet","variable focus imaging"],"year":"2022"},{"oa_version":"Submitted Version","month":"05","citation":{"ama":"Balazs D, Erkan ND, Quien M, Hanrath T. Inkjet printing of epitaxially connected nanocrystal superlattices. Nano Research. 2022;15(5):4536–4543. doi:10.1007/s12274-021-4022-7","ista":"Balazs D, Erkan ND, Quien M, Hanrath T. 2022. Inkjet printing of epitaxially connected nanocrystal superlattices. Nano Research. 15(5), 4536–4543.","short":"D. Balazs, N.D. Erkan, M. Quien, T. Hanrath, Nano Research 15 (2022) 4536–4543.","ieee":"D. Balazs, N. D. Erkan, M. Quien, and T. Hanrath, “Inkjet printing of epitaxially connected nanocrystal superlattices,” Nano Research, vol. 15, no. 5. Springer Nature, pp. 4536–4543, 2022.","apa":"Balazs, D., Erkan, N. D., Quien, M., & Hanrath, T. (2022). Inkjet printing of epitaxially connected nanocrystal superlattices. Nano Research. Springer Nature. https://doi.org/10.1007/s12274-021-4022-7","chicago":"Balazs, Daniel, N. Deniz Erkan, Michelle Quien, and Tobias Hanrath. “Inkjet Printing of Epitaxially Connected Nanocrystal Superlattices.” Nano Research. Springer Nature, 2022. https://doi.org/10.1007/s12274-021-4022-7.","mla":"Balazs, Daniel, et al. “Inkjet Printing of Epitaxially Connected Nanocrystal Superlattices.” Nano Research, vol. 15, no. 5, Springer Nature, 2022, pp. 4536–4543, doi:10.1007/s12274-021-4022-7."},"day":"01","volume":15,"article_processing_charge":"No","doi":"10.1007/s12274-021-4022-7","abstract":[{"lang":"eng","text":"Access to a blossoming library of colloidal nanomaterials provides building blocks for complex assembled materials. The journey to bring these prospects to fruition stands to benefit from the application of advanced processing methods. Epitaxially connected nanocrystal (or quantum dot) superlattices present a captivating model system for mesocrystals with intriguing emergent properties. The conventional processing approach to creating these materials involves assembling and attaching the constituent nanocrystals at the interface between two immiscible fluids. Processing small liquid volumes of the colloidal nanocrystal solution involves several complexities arising from the concurrent spreading, evaporation, assembly, and attachment. The ability of inkjet printers to deliver small (typically picoliter) liquid volumes with precise positioning is attractive to advance fundamental insights into the processing science, and thereby potentially enable new routes to incorporate the epitaxially connected superlattices into technology platforms. In this study, we identified the processing window of opportunity, including nanocrystal ink formulation and printing approach to enable delivery of colloidal nanocrystals from an inkjet nozzle onto the surface of a sessile droplet of the immiscible subphase. We demonstrate how inkjet printing can be scaled-down to enable the fabrication of epitaxially connected superlattices on patterned sub-millimeter droplets. We anticipate that insights from this work will spur on future advances to enable more mechanistic insights into the assembly processes and new avenues to create high-fidelity superlattices."}],"issue":"5","_id":"10587","title":"Inkjet printing of epitaxially connected nanocrystal superlattices","author":[{"last_name":"Balazs","full_name":"Balazs, Daniel","first_name":"Daniel","id":"302BADF6-85FC-11EA-9E3B-B9493DDC885E","orcid":"0000-0001-7597-043X"},{"first_name":"N. Deniz","full_name":"Erkan, N. Deniz","last_name":"Erkan"},{"first_name":"Michelle","last_name":"Quien","full_name":"Quien, Michelle"},{"first_name":"Tobias","last_name":"Hanrath","full_name":"Hanrath, Tobias"}],"publication_status":"published","acknowledgement":"This project was supported by the US Department of Energy through award (No. DE-SC0018026). The work was performed in part at the Cornell NanoScale Facility, a member of the National Nanotechnology Coordinated Infrastructure (NNCI), which is supported by the National Science Foundation (No. NNCI-1542081) and in part at the Cornell Center for Materials Research with funding from the NSF MRSEC program (No. DMR-1719875). The authors thank Beth Rhodes for the technical assistance with inkjet printing, and E. Peretz and Q. Wen for the early exploratory experiments.","status":"public","publication_identifier":{"issn":["1998-0124"],"eissn":["1998-0000"]},"date_created":"2022-01-02T23:01:34Z","scopus_import":"1","external_id":{"isi":["000735340300001"]},"date_published":"2022-05-01T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"MaIb"}],"quality_controlled":"1","type":"journal_article","language":[{"iso":"eng"}],"isi":1,"publisher":"Springer Nature","main_file_link":[{"url":"https://www.osti.gov/biblio/1837946","open_access":"1"}],"intvolume":" 15","keyword":["interfacial assembly","colloidal nanocrystal","superlattice","inkjet printing"],"year":"2022","oa":1,"page":"4536–4543","article_type":"original","date_updated":"2023-08-02T13:47:21Z","publication":"Nano Research"},{"abstract":[{"text":"We prove the Sobolev-to-Lipschitz property for metric measure spaces satisfying the quasi curvature-dimension condition recently introduced in Milman (Commun Pure Appl Math, to appear). We provide several applications to properties of the corresponding heat semigroup. In particular, under the additional assumption of infinitesimal Hilbertianity, we show the Varadhan short-time asymptotics for the heat semigroup with respect to the distance, and prove the irreducibility of the heat semigroup. These results apply in particular to large classes of (ideal) sub-Riemannian manifolds.","lang":"eng"}],"doi":"10.1007/s00208-021-02331-2","author":[{"last_name":"Dello Schiavo","full_name":"Dello Schiavo, Lorenzo","first_name":"Lorenzo","id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","orcid":"0000-0002-9881-6870"},{"full_name":"Suzuki, Kohei","last_name":"Suzuki","first_name":"Kohei"}],"title":"Sobolev-to-Lipschitz property on QCD- spaces and applications","_id":"10588","publication_status":"published","status":"public","acknowledgement":"The authors are grateful to Dr. Bang-Xian Han for helpful discussions on the Sobolev-to-Lipschitz property on metric measure spaces, and to Professor Kazuhiro Kuwae, Professor Emanuel Milman, Dr. Giorgio Stefani, and Dr. Gioacchino Antonelli for reading a preliminary version of this work and for their valuable comments and suggestions. Finally, they wish to express their gratitude to two anonymous Reviewers whose suggestions improved the presentation of this work.\r\n\r\nL.D.S. gratefully acknowledges funding of his position by the Austrian Science Fund (FWF) grant F65, and by the European Research Council (ERC, grant No. 716117, awarded to Prof. Dr. Jan Maas).\r\n\r\nK.S. gratefully acknowledges funding by: the JSPS Overseas Research Fellowships, Grant Nr. 290142; World Premier International Research Center Initiative (WPI), MEXT, Japan; JSPS Grant-in-Aid for Scientific Research on Innovative Areas “Discrete Geometric Analysis for Materials Design”, Grant Number 17H06465; and the Alexander von Humboldt Stiftung, Humboldt-Forschungsstipendium.","ec_funded":1,"publication_identifier":{"eissn":["1432-1807"],"issn":["0025-5831"]},"project":[{"_id":"256E75B8-B435-11E9-9278-68D0E5697425","grant_number":"716117","name":"Optimal Transport and Stochastic Dynamics","call_identifier":"H2020"},{"name":"Taming Complexity in Partial Differential Systems","grant_number":"F6504","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"oa_version":"Published Version","day":"01","citation":{"chicago":"Dello Schiavo, Lorenzo, and Kohei Suzuki. “Sobolev-to-Lipschitz Property on QCD- Spaces and Applications.” Mathematische Annalen. Springer Nature, 2022. https://doi.org/10.1007/s00208-021-02331-2.","mla":"Dello Schiavo, Lorenzo, and Kohei Suzuki. “Sobolev-to-Lipschitz Property on QCD- Spaces and Applications.” Mathematische Annalen, vol. 384, Springer Nature, 2022, pp. 1815–32, doi:10.1007/s00208-021-02331-2.","short":"L. Dello Schiavo, K. Suzuki, Mathematische Annalen 384 (2022) 1815–1832.","ama":"Dello Schiavo L, Suzuki K. Sobolev-to-Lipschitz property on QCD- spaces and applications. Mathematische Annalen. 2022;384:1815-1832. doi:10.1007/s00208-021-02331-2","ista":"Dello Schiavo L, Suzuki K. 2022. Sobolev-to-Lipschitz property on QCD- spaces and applications. Mathematische Annalen. 384, 1815–1832.","apa":"Dello Schiavo, L., & Suzuki, K. (2022). Sobolev-to-Lipschitz property on QCD- spaces and applications. Mathematische Annalen. Springer Nature. https://doi.org/10.1007/s00208-021-02331-2","ieee":"L. Dello Schiavo and K. Suzuki, “Sobolev-to-Lipschitz property on QCD- spaces and applications,” Mathematische Annalen, vol. 384. Springer Nature, pp. 1815–1832, 2022."},"file_date_updated":"2022-01-03T11:08:31Z","ddc":["510"],"month":"12","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","volume":384,"file":[{"date_created":"2022-01-03T11:08:31Z","file_id":"10596","checksum":"2593abbf195e38efa93b6006b1e90eb1","content_type":"application/pdf","access_level":"open_access","date_updated":"2022-01-03T11:08:31Z","success":1,"file_size":410090,"relation":"main_file","creator":"alisjak","file_name":"2021_MathAnn_DelloSchiavo.pdf"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"arxiv":1,"year":"2022","keyword":["quasi curvature-dimension condition","sub-riemannian geometry","Sobolev-to-Lipschitz property","Varadhan short-time asymptotics"],"oa":1,"article_type":"original","page":"1815-1832","publication":"Mathematische Annalen","date_updated":"2023-08-02T13:39:05Z","date_published":"2022-12-01T00:00:00Z","external_id":{"isi":["000734150200001"],"arxiv":["2110.05137"]},"scopus_import":"1","date_created":"2022-01-02T23:01:35Z","department":[{"_id":"JaMa"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","isi":1,"quality_controlled":"1","language":[{"iso":"eng"}],"type":"journal_article","intvolume":" 384","publisher":"Springer Nature"},{"publication_status":"published","status":"public","publication_identifier":{"issn":["1745-2473"],"eissn":["1745-2481"]},"doi":"10.1038/s41567-021-01459-x","abstract":[{"lang":"eng","text":"Superconducting devices ubiquitously have an excess of broken Cooper pairs, which can hamper their performance. It is widely believed that external radiation is responsible but a study now suggests there must be an additional, unknown source."}],"_id":"10589","author":[{"first_name":"Andrew P","id":"4AD6785A-F248-11E8-B48F-1D18A9856A87","last_name":"Higginbotham","full_name":"Higginbotham, Andrew P","orcid":"0000-0003-2607-2363"}],"title":"A secret source","volume":18,"article_processing_charge":"No","oa_version":"None","month":"02","day":"01","citation":{"ista":"Higginbotham AP. 2022. A secret source. Nature Physics. 18, 126.","ama":"Higginbotham AP. A secret source. Nature Physics. 2022;18:126. doi:10.1038/s41567-021-01459-x","short":"A.P. Higginbotham, Nature Physics 18 (2022) 126.","apa":"Higginbotham, A. P. (2022). A secret source. Nature Physics. Springer Nature. https://doi.org/10.1038/s41567-021-01459-x","ieee":"A. P. Higginbotham, “A secret source,” Nature Physics, vol. 18. Springer Nature, p. 126, 2022.","mla":"Higginbotham, Andrew P. “A Secret Source.” Nature Physics, vol. 18, Springer Nature, 2022, p. 126, doi:10.1038/s41567-021-01459-x.","chicago":"Higginbotham, Andrew P. “A Secret Source.” Nature Physics. Springer Nature, 2022. https://doi.org/10.1038/s41567-021-01459-x."},"article_type":"letter_note","page":"126","date_updated":"2023-08-02T13:43:11Z","publication":"Nature Physics","keyword":["superconducting devices","superconducting properties and materials"],"year":"2022","quality_controlled":"1","type":"journal_article","language":[{"iso":"eng"}],"isi":1,"intvolume":" 18","publisher":"Springer Nature","scopus_import":"1","date_created":"2022-01-02T23:01:35Z","external_id":{"isi":["000733431000007"]},"date_published":"2022-02-01T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"AnHi"}]},{"title":"Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap","author":[{"last_name":"Henheik","full_name":"Henheik, Sven Joscha","first_name":"Sven Joscha","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","orcid":"0000-0003-1106-327X"},{"full_name":"Teufel, Stefan","last_name":"Teufel","first_name":"Stefan"}],"_id":"10600","abstract":[{"text":"We show that recent results on adiabatic theory for interacting gapped many-body systems on finite lattices remain valid in the thermodynamic limit. More precisely, we prove a generalized super-adiabatic theorem for the automorphism group describing the infinite volume dynamics on the quasi-local algebra of observables. The key assumption is the existence of a sequence of gapped finite volume Hamiltonians, which generates the same infinite volume dynamics in the thermodynamic limit. Our adiabatic theorem also holds for certain perturbations of gapped ground states that close the spectral gap (so it is also an adiabatic theorem for resonances and, in this sense, “generalized”), and it provides an adiabatic approximation to all orders in the adiabatic parameter (a property often called “super-adiabatic”). In addition to the existing results for finite lattices, we also perform a resummation of the adiabatic expansion and allow for observables that are not strictly local. Finally, as an application, we prove the validity of linear and higher order response theory for our class of perturbations for infinite systems. While we consider the result and its proof as new and interesting in itself, we also lay the foundation for the proof of an adiabatic theorem for systems with a gap only in the bulk, which will be presented in a follow-up article.","lang":"eng"}],"issue":"1","doi":"10.1063/5.0051632","publication_identifier":{"issn":["0022-2488"],"eissn":["1089-7658"]},"project":[{"grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d","name":"Random matrices beyond Wigner-Dyson-Mehta","call_identifier":"H2020"}],"publication_status":"published","acknowledgement":"J.H. acknowledges partial financial support from ERC Advanced Grant “RMTBeyond” No. 101020331.","status":"public","ec_funded":1,"citation":{"ieee":"S. J. Henheik and S. Teufel, “Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap,” Journal of Mathematical Physics, vol. 63, no. 1. AIP Publishing, 2022.","apa":"Henheik, S. J., & Teufel, S. (2022). Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap. Journal of Mathematical Physics. AIP Publishing. https://doi.org/10.1063/5.0051632","short":"S.J. Henheik, S. Teufel, Journal of Mathematical Physics 63 (2022).","ista":"Henheik SJ, Teufel S. 2022. Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap. Journal of Mathematical Physics. 63(1), 011901.","ama":"Henheik SJ, Teufel S. Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap. Journal of Mathematical Physics. 2022;63(1). doi:10.1063/5.0051632","chicago":"Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic Limit: Systems with a Uniform Gap.” Journal of Mathematical Physics. AIP Publishing, 2022. https://doi.org/10.1063/5.0051632.","mla":"Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic Limit: Systems with a Uniform Gap.” Journal of Mathematical Physics, vol. 63, no. 1, 011901, AIP Publishing, 2022, doi:10.1063/5.0051632."},"day":"03","month":"01","oa_version":"Preprint","arxiv":1,"volume":63,"article_processing_charge":"No","oa":1,"year":"2022","keyword":["mathematical physics","statistical and nonlinear physics"],"publication":"Journal of Mathematical Physics","date_updated":"2023-08-02T13:44:32Z","article_number":"011901","article_type":"original","department":[{"_id":"GradSch"},{"_id":"LaEr"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"arxiv":["2012.15238"],"isi":["000739446000009"]},"date_published":"2022-01-03T00:00:00Z","date_created":"2022-01-03T12:19:48Z","publisher":"AIP Publishing","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2012.15238"}],"intvolume":" 63","isi":1,"type":"journal_article","language":[{"iso":"eng"}],"quality_controlled":"1"},{"author":[{"orcid":"0000-0002-8122-2881","last_name":"Kretinsky","full_name":"Kretinsky, Jan","first_name":"Jan","id":"44CEF464-F248-11E8-B48F-1D18A9856A87"},{"id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","first_name":"Tobias","full_name":"Meggendorfer, Tobias","last_name":"Meggendorfer","orcid":"0000-0002-1712-2165"},{"last_name":"Waldmann","full_name":"Waldmann, Clara","first_name":"Clara"},{"full_name":"Weininger, Maximilian","last_name":"Weininger","first_name":"Maximilian"}],"title":"Index appearance record with preorders","_id":"10602","abstract":[{"lang":"eng","text":"Transforming ω-automata into parity automata is traditionally done using appearance records. We present an efficient variant of this idea, tailored to Rabin automata, and several optimizations applicable to all appearance records. We compare the methods experimentally and show that our method produces significantly smaller automata than previous approaches."}],"doi":"10.1007/s00236-021-00412-y","publication_identifier":{"issn":["0001-5903"],"eissn":["1432-0525"]},"project":[{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"publication_status":"published","status":"public","acknowledgement":"This work is partially funded by the German Research Foundation (DFG) projects Verified Model Checkers (No. 317422601) and Statistical Unbounded Verification (No. 383882557), and the Alexander von Humboldt Foundation with funds from the German Federal Ministry of Education and Research. It is an extended version of [21], including all proofs together with further explanations and examples. Moreover, we provide a new, more efficient construction based on (total) preorders, unifying previous optimizations. Experiments are performed with a new, performant implementation, comparing our approach to the current state of the art.","day":"01","citation":{"ama":"Kretinsky J, Meggendorfer T, Waldmann C, Weininger M. Index appearance record with preorders. Acta Informatica. 2022;59:585-618. doi:10.1007/s00236-021-00412-y","ista":"Kretinsky J, Meggendorfer T, Waldmann C, Weininger M. 2022. Index appearance record with preorders. Acta Informatica. 59, 585–618.","short":"J. Kretinsky, T. Meggendorfer, C. Waldmann, M. Weininger, Acta Informatica 59 (2022) 585–618.","apa":"Kretinsky, J., Meggendorfer, T., Waldmann, C., & Weininger, M. (2022). Index appearance record with preorders. Acta Informatica. Springer Nature. https://doi.org/10.1007/s00236-021-00412-y","ieee":"J. Kretinsky, T. Meggendorfer, C. Waldmann, and M. Weininger, “Index appearance record with preorders,” Acta Informatica, vol. 59. Springer Nature, pp. 585–618, 2022.","mla":"Kretinsky, Jan, et al. “Index Appearance Record with Preorders.” Acta Informatica, vol. 59, Springer Nature, 2022, pp. 585–618, doi:10.1007/s00236-021-00412-y.","chicago":"Kretinsky, Jan, Tobias Meggendorfer, Clara Waldmann, and Maximilian Weininger. “Index Appearance Record with Preorders.” Acta Informatica. Springer Nature, 2022. https://doi.org/10.1007/s00236-021-00412-y."},"file_date_updated":"2022-01-07T07:50:31Z","ddc":["000"],"month":"10","oa_version":"Published Version","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file":[{"date_created":"2022-01-07T07:50:31Z","file_id":"10603","file_size":1066082,"relation":"main_file","creator":"cchlebak","file_name":"2021_ActaInfor_Křetínský.pdf","content_type":"application/pdf","checksum":"bf1c195b6aaf59e8530cf9e3a9d731f7","access_level":"open_access","date_updated":"2022-01-07T07:50:31Z","success":1}],"has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","volume":59,"oa":1,"year":"2022","keyword":["computer networks and communications","information systems","software"],"publication":"Acta Informatica","date_updated":"2023-08-02T13:49:28Z","article_type":"original","page":"585-618","department":[{"_id":"KrCh"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000735765500001"]},"date_published":"2022-10-01T00:00:00Z","scopus_import":"1","date_created":"2022-01-06T12:37:27Z","intvolume":" 59","publisher":"Springer Nature","isi":1,"type":"journal_article","language":[{"iso":"eng"}],"quality_controlled":"1"},{"publication_status":"published","status":"public","acknowledgement":"We thank S. O'Neill, C. Simmons, and the World Mosquito Project for providing access to unpublished data. S. Ritchie provided valuable insights into Aedes aegypti biology and the literature describing A. aegypti populations near Cairns. We thank B. Cooper for help with the figures and D. Shropshire, S. O'Neill, S. Ritchie, A. Hoffmann, B. Cooper, and members of the Cooper lab for comments on an earlier draft. Comments from three reviewers greatly improved our presentation.","publication_identifier":{"eissn":["2056-3744"]},"abstract":[{"text":"Maternally inherited Wolbachia transinfections are being introduced into natural mosquito populations to reduce the transmission of dengue, Zika, and other arboviruses. Wolbachia-induced cytoplasmic incompatibility provides a frequency-dependent reproductive advantage to infected females that can spread transinfections within and among populations. However, because transinfections generally reduce host fitness, they tend to spread within populations only after their frequency exceeds a critical threshold. This produces bistability with stable equilibrium frequencies at both 0 and 1, analogous to the bistability produced by underdominance between alleles or karyotypes and by population dynamics under Allee effects. Here, we analyze how stochastic frequency variation produced by finite population size can facilitate the local spread of variants with bistable dynamics into areas where invasion is unexpected from deterministic models. Our exemplar is the establishment of wMel Wolbachia in the Aedes aegypti population of Pyramid Estates (PE), a small community in far north Queensland, Australia. In 2011, wMel was stably introduced into Gordonvale, separated from PE by barriers to A. aegypti dispersal. After nearly 6 years during which wMel was observed only at low frequencies in PE, corresponding to an apparent equilibrium between immigration and selection, wMel rose to fixation by 2018. Using analytic approximations and statistical analyses, we demonstrate that the observed fixation of wMel at PE is consistent with both stochastic transition past an unstable threshold frequency and deterministic transformation produced by steady immigration at a rate just above the threshold required for deterministic invasion. The indeterminacy results from a delicate balance of parameters needed to produce the delayed transition observed. Our analyses suggest that once Wolbachia transinfections are established locally through systematic introductions, stochastic “threshold crossing” is likely to only minimally enhance spatial spread, providing a local ratchet that slightly—but systematically—aids area-wide transformation of disease-vector populations in heterogeneous landscapes.","lang":"eng"}],"issue":"1","doi":"10.1002/evl3.270","title":"Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control","author":[{"first_name":"Michael","last_name":"Turelli","full_name":"Turelli, Michael"},{"first_name":"Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240"}],"_id":"10604","has_accepted_license":"1","volume":6,"article_processing_charge":"No","file":[{"checksum":"7e9a37e3b65b480cd7014a6a4a7e460a","content_type":"application/pdf","access_level":"open_access","date_updated":"2022-07-29T06:59:10Z","success":1,"file_size":2435185,"relation":"main_file","creator":"dernst","file_name":"2022_EvolutionLetters_Turelli.pdf","date_created":"2022-07-29T06:59:10Z","file_id":"11689"}],"oa_version":"Published Version","citation":{"apa":"Turelli, M., & Barton, N. H. (2022). Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control. Evolution Letters. Wiley. https://doi.org/10.1002/evl3.270","ieee":"M. Turelli and N. H. Barton, “Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control,” Evolution Letters, vol. 6, no. 1. Wiley, pp. 92–105, 2022.","ista":"Turelli M, Barton NH. 2022. Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control. Evolution Letters. 6(1), 92–105.","short":"M. Turelli, N.H. Barton, Evolution Letters 6 (2022) 92–105.","ama":"Turelli M, Barton NH. Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control. Evolution Letters. 2022;6(1):92-105. doi:10.1002/evl3.270","mla":"Turelli, Michael, and Nicholas H. Barton. “Why Did the Wolbachia Transinfection Cross the Road? Drift, Deterministic Dynamics, and Disease Control.” Evolution Letters, vol. 6, no. 1, Wiley, 2022, pp. 92–105, doi:10.1002/evl3.270.","chicago":"Turelli, Michael, and Nicholas H Barton. “Why Did the Wolbachia Transinfection Cross the Road? Drift, Deterministic Dynamics, and Disease Control.” Evolution Letters. Wiley, 2022. https://doi.org/10.1002/evl3.270."},"day":"01","file_date_updated":"2022-07-29T06:59:10Z","ddc":["570"],"month":"02","related_material":{"record":[{"status":"public","relation":"research_data","id":"11686"}]},"page":"92-105","article_type":"original","publication":"Evolution Letters","date_updated":"2023-08-02T13:50:09Z","year":"2022","keyword":["genetics","ecology","evolution","behavior and systematics"],"oa":1,"isi":1,"quality_controlled":"1","language":[{"iso":"eng"}],"type":"journal_article","publisher":"Wiley","intvolume":" 6","date_published":"2022-02-01T00:00:00Z","external_id":{"isi":["000754412600008"]},"date_created":"2022-01-09T09:45:17Z","department":[{"_id":"NiBa"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8"},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file":[{"access_level":"open_access","checksum":"f454212a5522a7818ba4b2892315c478","content_type":"application/pdf","success":1,"date_updated":"2022-01-12T13:50:04Z","file_name":"2022_PLOSBio_Belyaeva.pdf","relation":"main_file","file_size":5426932,"creator":"cchlebak","file_id":"10615","date_created":"2022-01-12T13:50:04Z"}],"has_accepted_license":"1","volume":20,"article_processing_charge":"No","citation":{"mla":"Belyaeva, Vera, et al. “Fos Regulates Macrophage Infiltration against Surrounding Tissue Resistance by a Cortical Actin-Based Mechanism in Drosophila.” PLoS Biology, vol. 20, no. 1, Public Library of Science, 2022, p. e3001494, doi:10.1371/journal.pbio.3001494.","chicago":"Belyaeva, Vera, Stephanie Wachner, Attila György, Shamsi Emtenani, Igor Gridchyn, Maria Akhmanova, M Linder, Marko Roblek, M Sibilia, and Daria E Siekhaus. “Fos Regulates Macrophage Infiltration against Surrounding Tissue Resistance by a Cortical Actin-Based Mechanism in Drosophila.” PLoS Biology. Public Library of Science, 2022. https://doi.org/10.1371/journal.pbio.3001494.","ieee":"V. Belyaeva et al., “Fos regulates macrophage infiltration against surrounding tissue resistance by a cortical actin-based mechanism in Drosophila,” PLoS Biology, vol. 20, no. 1. Public Library of Science, p. e3001494, 2022.","apa":"Belyaeva, V., Wachner, S., György, A., Emtenani, S., Gridchyn, I., Akhmanova, M., … Siekhaus, D. E. (2022). Fos regulates macrophage infiltration against surrounding tissue resistance by a cortical actin-based mechanism in Drosophila. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.3001494","ama":"Belyaeva V, Wachner S, György A, et al. Fos regulates macrophage infiltration against surrounding tissue resistance by a cortical actin-based mechanism in Drosophila. PLoS Biology. 2022;20(1):e3001494. doi:10.1371/journal.pbio.3001494","ista":"Belyaeva V, Wachner S, György A, Emtenani S, Gridchyn I, Akhmanova M, Linder M, Roblek M, Sibilia M, Siekhaus DE. 2022. Fos regulates macrophage infiltration against surrounding tissue resistance by a cortical actin-based mechanism in Drosophila. PLoS Biology. 20(1), e3001494.","short":"V. Belyaeva, S. Wachner, A. György, S. Emtenani, I. Gridchyn, M. Akhmanova, M. Linder, M. Roblek, M. Sibilia, D.E. Siekhaus, PLoS Biology 20 (2022) e3001494."},"day":"06","file_date_updated":"2022-01-12T13:50:04Z","ddc":["570"],"month":"01","pmid":1,"oa_version":"Published Version","publication_identifier":{"issn":["1544-9173"],"eissn":["1545-7885"]},"project":[{"_id":"253B6E48-B435-11E9-9278-68D0E5697425","grant_number":"P29638","name":"Drosophila TNFa´s Funktion in Immunzellen","call_identifier":"FWF"},{"name":"Tissue barrier penetration is crucial for immunity and metastasis","_id":"26199CA4-B435-11E9-9278-68D0E5697425","grant_number":"24800"},{"call_identifier":"FP7","name":"Investigating the role of transporters in invasive migration through junctions","_id":"2536F660-B435-11E9-9278-68D0E5697425","grant_number":"334077"}],"acknowledgement":"We thank the following for their contributions: Plasmids were supplied by the Drosophila Genomics Resource Center (NIH 2P40OD010949-10A1); fly stocks were provided by K. Brueckner, B. Stramer, M. Uhlirova, O. Schuldiner, the Bloomington Drosophila Stock Center (NIH P40OD018537) and the Vienna Drosophila Resource Center, FlyBase for essential genomic information, and the BDGP in situ database for data. For antibodies, we thank the Developmental Studies Hybridoma Bank, which was created by the Eunice Kennedy Shriver National Institute of Child Health and Human Development of the NIH and is maintained at the University of Iowa, as well as J. Zeitlinger for her generous gift of Dfos antibody. We thank the Vienna BioCenter Core Facilities for RNA sequencing and analysis and the Life Scientific Service Units at IST Austria for technical support and assistance with microscopy and FACS analysis. We thank C. P. Heisenberg, P. Martin, M. Sixt, and Siekhaus group members for discussions and T. Hurd, A. Ratheesh, and P. Rangan for comments on the manuscript.","publication_status":"published","status":"public","ec_funded":1,"title":"Fos regulates macrophage infiltration against surrounding tissue resistance by a cortical actin-based mechanism in Drosophila","author":[{"last_name":"Belyaeva","full_name":"Belyaeva, Vera","first_name":"Vera","id":"47F080FE-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Stephanie","id":"2A95E7B0-F248-11E8-B48F-1D18A9856A87","last_name":"Wachner","full_name":"Wachner, Stephanie"},{"first_name":"Attila","id":"3BCEDBE0-F248-11E8-B48F-1D18A9856A87","last_name":"György","full_name":"György, Attila","orcid":"0000-0002-1819-198X"},{"first_name":"Shamsi","id":"49D32318-F248-11E8-B48F-1D18A9856A87","last_name":"Emtenani","full_name":"Emtenani, Shamsi","orcid":"0000-0001-6981-6938"},{"orcid":"0000-0002-1807-1929","first_name":"Igor","id":"4B60654C-F248-11E8-B48F-1D18A9856A87","last_name":"Gridchyn","full_name":"Gridchyn, Igor"},{"orcid":"0000-0003-1522-3162","first_name":"Maria","id":"3425EC26-F248-11E8-B48F-1D18A9856A87","last_name":"Akhmanova","full_name":"Akhmanova, Maria"},{"first_name":"M","full_name":"Linder, M","last_name":"Linder"},{"id":"3047D808-F248-11E8-B48F-1D18A9856A87","first_name":"Marko","full_name":"Roblek, Marko","last_name":"Roblek","orcid":"0000-0001-9588-1389"},{"first_name":"M","full_name":"Sibilia, M","last_name":"Sibilia"},{"orcid":"0000-0001-8323-8353","id":"3D224B9E-F248-11E8-B48F-1D18A9856A87","first_name":"Daria E","full_name":"Siekhaus, Daria E","last_name":"Siekhaus"}],"_id":"10614","abstract":[{"lang":"eng","text":"The infiltration of immune cells into tissues underlies the establishment of tissue-resident macrophages and responses to infections and tumors. Yet the mechanisms immune cells utilize to negotiate tissue barriers in living organisms are not well understood, and a role for cortical actin has not been examined. Here, we find that the tissue invasion of Drosophila macrophages, also known as plasmatocytes or hemocytes, utilizes enhanced cortical F-actin levels stimulated by the Drosophila member of the fos proto oncogene transcription factor family (Dfos, Kayak). RNA sequencing analysis and live imaging show that Dfos enhances F-actin levels around the entire macrophage surface by increasing mRNA levels of the membrane spanning molecular scaffold tetraspanin TM4SF, and the actin cross-linking filamin Cheerio, which are themselves required for invasion. Both the filamin and the tetraspanin enhance the cortical activity of Rho1 and the formin Diaphanous and thus the assembly of cortical actin, which is a critical function since expressing a dominant active form of Diaphanous can rescue the Dfos macrophage invasion defect. In vivo imaging shows that Dfos enhances the efficiency of the initial phases of macrophage tissue entry. Genetic evidence argues that this Dfos-induced program in macrophages counteracts the constraint produced by the tension of surrounding tissues and buffers the properties of the macrophage nucleus from affecting tissue entry. We thus identify strengthening the cortical actin cytoskeleton through Dfos as a key process allowing efficient forward movement of an immune cell into surrounding tissues. "}],"issue":"1","doi":"10.1371/journal.pbio.3001494","publisher":"Public Library of Science","intvolume":" 20","isi":1,"type":"journal_article","language":[{"iso":"eng"}],"quality_controlled":"1","department":[{"_id":"DaSi"},{"_id":"JoCs"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000971223700001"],"pmid":["34990456"]},"date_published":"2022-01-06T00:00:00Z","date_created":"2022-01-12T10:18:17Z","scopus_import":"1","acknowledged_ssus":[{"_id":"LifeSc"}],"publication":"PLoS Biology","date_updated":"2024-03-25T23:30:15Z","related_material":{"link":[{"url":"https://www.biorxiv.org/content/10.1101/2020.09.18.301481","relation":"earlier_version"},{"relation":"press_release","url":"https://ista.ac.at/en/news/resisting-the-pressure/","description":"News on the ISTA Website"}],"record":[{"status":"public","relation":"earlier_version","id":"8557"},{"relation":"dissertation_contains","status":"public","id":"11193"}]},"page":"e3001494","article_type":"original","oa":1,"year":"2022"},{"publication_identifier":{"issn":["1385-0172"],"eissn":["1572-9656"]},"project":[{"_id":"62796744-2b32-11ec-9570-940b20777f1d","grant_number":"101020331","call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"publication_status":"published","acknowledgement":"I am very grateful to Robert Seiringer for his guidance during this project and for many valuable comments on an earlier version of the manuscript. Moreover, I would like to thank Asbjørn Bækgaard Lauritsen for many helpful discussions and comments, pointing out the reference [22] and for his involvement in a closely related joint project [13]. Finally, I am grateful to Christian Hainzl for valuable comments on an earlier version of the manuscript and Andreas Deuchert for interesting discussions.","status":"public","ec_funded":1,"author":[{"orcid":"0000-0003-1106-327X","first_name":"Sven Joscha","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","last_name":"Henheik","full_name":"Henheik, Sven Joscha"}],"title":"The BCS critical temperature at high density","_id":"10623","issue":"1","abstract":[{"text":"We investigate the BCS critical temperature Tc in the high-density limit and derive an asymptotic formula, which strongly depends on the behavior of the interaction potential V on the Fermi-surface. Our results include a rigorous confirmation for the behavior of Tc at high densities proposed by Langmann et al. (Phys Rev Lett 122:157001, 2019) and identify precise conditions under which superconducting domes arise in BCS theory.","lang":"eng"}],"doi":"10.1007/s11040-021-09415-0","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"arxiv":1,"file":[{"file_id":"10624","date_created":"2022-01-14T07:27:45Z","access_level":"open_access","checksum":"d44f8123a52592a75b2c3b8ee2cd2435","content_type":"application/pdf","success":1,"date_updated":"2022-01-14T07:27:45Z","file_name":"2022_MathPhyAnalGeo_Henheik.pdf","creator":"cchlebak","relation":"main_file","file_size":505804}],"has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","volume":25,"day":"11","citation":{"mla":"Henheik, Sven Joscha. “The BCS Critical Temperature at High Density.” Mathematical Physics, Analysis and Geometry, vol. 25, no. 1, 3, Springer Nature, 2022, doi:10.1007/s11040-021-09415-0.","chicago":"Henheik, Sven Joscha. “The BCS Critical Temperature at High Density.” Mathematical Physics, Analysis and Geometry. Springer Nature, 2022. https://doi.org/10.1007/s11040-021-09415-0.","ieee":"S. J. Henheik, “The BCS critical temperature at high density,” Mathematical Physics, Analysis and Geometry, vol. 25, no. 1. Springer Nature, 2022.","apa":"Henheik, S. J. (2022). The BCS critical temperature at high density. Mathematical Physics, Analysis and Geometry. Springer Nature. https://doi.org/10.1007/s11040-021-09415-0","ista":"Henheik SJ. 2022. The BCS critical temperature at high density. Mathematical Physics, Analysis and Geometry. 25(1), 3.","ama":"Henheik SJ. The BCS critical temperature at high density. Mathematical Physics, Analysis and Geometry. 2022;25(1). doi:10.1007/s11040-021-09415-0","short":"S.J. Henheik, Mathematical Physics, Analysis and Geometry 25 (2022)."},"ddc":["514"],"file_date_updated":"2022-01-14T07:27:45Z","month":"01","oa_version":"Published Version","publication":"Mathematical Physics, Analysis and Geometry","date_updated":"2023-08-02T13:51:52Z","article_type":"original","article_number":"3","oa":1,"year":"2022","keyword":["geometry and topology","mathematical physics"],"intvolume":" 25","publisher":"Springer Nature","isi":1,"language":[{"iso":"eng"}],"quality_controlled":"1","type":"journal_article","department":[{"_id":"GradSch"},{"_id":"LaEr"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_published":"2022-01-11T00:00:00Z","external_id":{"isi":["000741387600001"],"arxiv":["2106.02015"]},"scopus_import":"1","date_created":"2022-01-13T15:40:53Z"},{"article_number":"e02146-21","article_type":"original","publication":"Journal of Virology","date_updated":"2023-08-02T13:52:33Z","year":"2022","keyword":["virology","insect science","immunology","microbiology"],"oa":1,"isi":1,"type":"journal_article","quality_controlled":"1","language":[{"iso":"eng"}],"publisher":"American Society for Microbiology","intvolume":" 96","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8906410","open_access":"1"}],"date_published":"2022-03-01T00:00:00Z","external_id":{"pmid":["35019710"],"isi":["000779305000033"]},"date_created":"2022-01-18T10:04:18Z","acknowledged_ssus":[{"_id":"EM-Fac"}],"scopus_import":"1","department":[{"_id":"FlSc"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_status":"published","acknowledgement":"This work was supported by INRAE starter funds, Project IDEXLYON (University of Lyon) within the Programme Investissements d’Avenir (ANR-16-IDEX-0005), and FINOVIAO14 (Fondation pour l’Université de Lyon), all to P.Y.L. This work was also supported by CellNetworks Research Group funds and Deutsche Forschungsgemeinschaft (DFG) funding (grant numbers LO-2338/1-1 and LO-2338/3-1) awarded to P.Y.L., Austrian Science Fund (FWF) grant P31445 to F.K.M.S., a Chinese Scholarship Council (CSC;no. 201904910701) fellowship to Q.X., and a ministére de l’enseignement supérieur, de la recherche et de l’innovation (MESRI) doctoral thesis grant to M.D.","status":"public","publication_identifier":{"eissn":["1098-5514"],"issn":["0022-538X"]},"project":[{"call_identifier":"FWF","name":"Structural conservation and diversity in retroviral capsid","_id":"26736D6A-B435-11E9-9278-68D0E5697425","grant_number":"P31445"}],"abstract":[{"text":"With more than 80 members worldwide, the Orthobunyavirus genus in the Peribunyaviridae family is a large genus of enveloped RNA viruses, many of which are emerging pathogens in humans and livestock. How orthobunyaviruses (OBVs) penetrate and infect mammalian host cells remains poorly characterized. Here, we investigated the entry mechanisms of the OBV Germiston (GERV). Viral particles were visualized by cryo-electron microscopy and appeared roughly spherical with an average diameter of 98 nm. Labeling of the virus with fluorescent dyes did not adversely affect its infectivity and allowed the monitoring of single particles in fixed and live cells. Using this approach, we found that endocytic internalization of bound viruses was asynchronous and occurred within 30-40 min. The virus entered Rab5a+ early endosomes and, subsequently, late endosomal vacuoles containing Rab7a but not LAMP-1. Infectious entry did not require proteolytic cleavage, and endosomal acidification was sufficient and necessary for viral fusion. Acid-activated penetration began 15-25 min after initiation of virus internalization and relied on maturation of early endosomes to late endosomes. The optimal pH for viral membrane fusion was slightly below 6.0, and penetration was hampered when the potassium influx was abolished. Overall, our study provides real-time visualization of GERV entry into host cells and demonstrates the importance of late endosomal maturation in facilitating OBV penetration.","lang":"eng"}],"issue":"5","doi":"10.1128/jvi.02146-21","title":"The Orthobunyavirus Germiston enters host cells from late endosomes","author":[{"first_name":"Stefan","full_name":"Windhaber, Stefan","last_name":"Windhaber"},{"first_name":"Qilin","last_name":"Xin","full_name":"Xin, Qilin"},{"first_name":"Zina M.","last_name":"Uckeley","full_name":"Uckeley, Zina M."},{"first_name":"Jana","full_name":"Koch, Jana","last_name":"Koch"},{"last_name":"Obr","full_name":"Obr, Martin","first_name":"Martin","id":"4741CA5A-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Céline","full_name":"Garnier, Céline","last_name":"Garnier"},{"full_name":"Luengo-Guyonnot, Catherine","last_name":"Luengo-Guyonnot","first_name":"Catherine"},{"full_name":"Duboeuf, Maëva","last_name":"Duboeuf","first_name":"Maëva"},{"first_name":"Florian KM","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","last_name":"Schur","full_name":"Schur, Florian KM","orcid":"0000-0003-4790-8078"},{"first_name":"Pierre-Yves","last_name":"Lozach","full_name":"Lozach, Pierre-Yves"}],"_id":"10639","article_processing_charge":"No","volume":96,"oa_version":"Published Version","citation":{"chicago":"Windhaber, Stefan, Qilin Xin, Zina M. Uckeley, Jana Koch, Martin Obr, Céline Garnier, Catherine Luengo-Guyonnot, Maëva Duboeuf, Florian KM Schur, and Pierre-Yves Lozach. “The Orthobunyavirus Germiston Enters Host Cells from Late Endosomes.” Journal of Virology. American Society for Microbiology, 2022. https://doi.org/10.1128/jvi.02146-21.","mla":"Windhaber, Stefan, et al. “The Orthobunyavirus Germiston Enters Host Cells from Late Endosomes.” Journal of Virology, vol. 96, no. 5, e02146-21, American Society for Microbiology, 2022, doi:10.1128/jvi.02146-21.","ista":"Windhaber S, Xin Q, Uckeley ZM, Koch J, Obr M, Garnier C, Luengo-Guyonnot C, Duboeuf M, Schur FK, Lozach P-Y. 2022. The Orthobunyavirus Germiston enters host cells from late endosomes. Journal of Virology. 96(5), e02146-21.","ama":"Windhaber S, Xin Q, Uckeley ZM, et al. The Orthobunyavirus Germiston enters host cells from late endosomes. Journal of Virology. 2022;96(5). doi:10.1128/jvi.02146-21","short":"S. Windhaber, Q. Xin, Z.M. Uckeley, J. Koch, M. Obr, C. Garnier, C. Luengo-Guyonnot, M. Duboeuf, F.K. Schur, P.-Y. Lozach, Journal of Virology 96 (2022).","apa":"Windhaber, S., Xin, Q., Uckeley, Z. M., Koch, J., Obr, M., Garnier, C., … Lozach, P.-Y. (2022). The Orthobunyavirus Germiston enters host cells from late endosomes. Journal of Virology. American Society for Microbiology. https://doi.org/10.1128/jvi.02146-21","ieee":"S. Windhaber et al., “The Orthobunyavirus Germiston enters host cells from late endosomes,” Journal of Virology, vol. 96, no. 5. American Society for Microbiology, 2022."},"day":"01","month":"03","pmid":1}]