[{"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"short":"M. Avila, D. Barkley, B. Hof, Annual Review of Fluid Mechanics 55 (2023) 575–602.","ieee":"M. Avila, D. Barkley, and B. Hof, “Transition to turbulence in pipe flow,” <i>Annual Review of Fluid Mechanics</i>, vol. 55. Annual Reviews, pp. 575–602, 2023.","ama":"Avila M, Barkley D, Hof B. Transition to turbulence in pipe flow. <i>Annual Review of Fluid Mechanics</i>. 2023;55:575-602. doi:<a href=\"https://doi.org/10.1146/annurev-fluid-120720-025957\">10.1146/annurev-fluid-120720-025957</a>","mla":"Avila, Marc, et al. “Transition to Turbulence in Pipe Flow.” <i>Annual Review of Fluid Mechanics</i>, vol. 55, Annual Reviews, 2023, pp. 575–602, doi:<a href=\"https://doi.org/10.1146/annurev-fluid-120720-025957\">10.1146/annurev-fluid-120720-025957</a>.","apa":"Avila, M., Barkley, D., &#38; Hof, B. (2023). Transition to turbulence in pipe flow. <i>Annual Review of Fluid Mechanics</i>. Annual Reviews. <a href=\"https://doi.org/10.1146/annurev-fluid-120720-025957\">https://doi.org/10.1146/annurev-fluid-120720-025957</a>","chicago":"Avila, Marc, Dwight Barkley, and Björn Hof. “Transition to Turbulence in Pipe Flow.” <i>Annual Review of Fluid Mechanics</i>. Annual Reviews, 2023. <a href=\"https://doi.org/10.1146/annurev-fluid-120720-025957\">https://doi.org/10.1146/annurev-fluid-120720-025957</a>.","ista":"Avila M, Barkley D, Hof B. 2023. Transition to turbulence in pipe flow. Annual Review of Fluid Mechanics. 55, 575–602."},"language":[{"iso":"eng"}],"oa":1,"file":[{"file_id":"12691","creator":"dernst","date_updated":"2023-02-27T09:35:52Z","file_size":4769537,"date_created":"2023-02-27T09:35:52Z","checksum":"f99ef30f76cabc9e5e1946b380c16db4","relation":"main_file","content_type":"application/pdf","access_level":"open_access","file_name":"2023_AnnReviewFluidMech_Avila.pdf","success":1}],"department":[{"_id":"BjHo"}],"month":"01","file_date_updated":"2023-02-27T09:35:52Z","publication_status":"published","publication_identifier":{"issn":["0066-4189"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"intvolume":"        55","abstract":[{"text":"Since the seminal studies by Osborne Reynolds in the nineteenth century, pipe flow has served as a primary prototype for investigating the transition to turbulence in wall-bounded flows. Despite the apparent simplicity of this flow, various facets of this problem have occupied researchers for more than a century. Here we review insights from three distinct perspectives: (a) stability and susceptibility of laminar flow, (b) phase transition and spatiotemporal dynamics, and (c) dynamical systems analysis of the Navier—Stokes equations. We show how these perspectives have led to a profound understanding of the onset of turbulence in pipe flow. Outstanding open points, applications to flows of complex fluids, and similarities with other wall-bounded flows are discussed.","lang":"eng"}],"has_accepted_license":"1","date_created":"2023-02-26T23:01:01Z","article_type":"original","volume":55,"title":"Transition to turbulence in pipe flow","oa_version":"Published Version","scopus_import":"1","day":"19","author":[{"first_name":"Marc","last_name":"Avila","full_name":"Avila, Marc"},{"first_name":"Dwight","last_name":"Barkley","full_name":"Barkley, Dwight"},{"last_name":"Hof","full_name":"Hof, Björn","id":"3A374330-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2057-2754","first_name":"Björn"}],"date_published":"2023-01-19T00:00:00Z","acknowledgement":"The authors are very grateful to Laurette Tuckerman for her helpful comments. This work was supported by grants from the Simons Foundation (grant numbers 662985, D.B., and 662960, B.H.) and the Priority Programme “SPP 1881: Turbulent Superstructures” of the Deutsche Forschungsgemeinschaft (grant number AV120/3-2 to M.A.).","publication":"Annual Review of Fluid Mechanics","status":"public","project":[{"grant_number":"662960","name":"Revisiting the Turbulence Problem Using Statistical Mechanics: Experimental Studies on Transitional and Turbulent Flows","_id":"238598C6-32DE-11EA-91FC-C7463DDC885E"}],"external_id":{"isi":["000915418100023"]},"isi":1,"year":"2023","quality_controlled":"1","ddc":["530"],"page":"575-602","type":"journal_article","_id":"12682","date_updated":"2023-08-01T13:20:30Z","publisher":"Annual Reviews","article_processing_charge":"No","doi":"10.1146/annurev-fluid-120720-025957"},{"year":"2023","isi":1,"external_id":{"isi":["000950650200005"],"arxiv":["2108.13694"]},"ec_funded":1,"acknowledgement":"G. Dubach gratefully acknowledges funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. L. Erdős is supported by ERC Advanced Grant “RMTBeyond” No. 101020331.","date_published":"2023-02-08T00:00:00Z","status":"public","publication":"Electronic Communications in Probability","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"},{"_id":"62796744-2b32-11ec-9570-940b20777f1d","call_identifier":"H2020","grant_number":"101020331","name":"Random matrices beyond Wigner-Dyson-Mehta"}],"_id":"12683","date_updated":"2023-10-17T12:48:10Z","type":"journal_article","article_processing_charge":"No","doi":"10.1214/23-ECP516","publisher":"Institute of Mathematical Statistics","quality_controlled":"1","page":"1-13","ddc":["510"],"department":[{"_id":"LaEr"}],"file":[{"checksum":"a1c6f0a3e33688fd71309c86a9aad86e","relation":"main_file","content_type":"application/pdf","access_level":"open_access","file_name":"2023_ElectCommProbability_Dubach.pdf","success":1,"file_id":"12692","date_updated":"2023-02-27T09:43:27Z","creator":"dernst","file_size":479105,"date_created":"2023-02-27T09:43:27Z"}],"arxiv":1,"month":"02","citation":{"chicago":"Dubach, Guillaume, and László Erdös. “Dynamics of a Rank-One Perturbation of a Hermitian Matrix.” <i>Electronic Communications in Probability</i>. Institute of Mathematical Statistics, 2023. <a href=\"https://doi.org/10.1214/23-ECP516\">https://doi.org/10.1214/23-ECP516</a>.","ista":"Dubach G, Erdös L. 2023. Dynamics of a rank-one perturbation of a Hermitian matrix. Electronic Communications in Probability. 28, 1–13.","apa":"Dubach, G., &#38; Erdös, L. (2023). Dynamics of a rank-one perturbation of a Hermitian matrix. <i>Electronic Communications in Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/23-ECP516\">https://doi.org/10.1214/23-ECP516</a>","mla":"Dubach, Guillaume, and László Erdös. “Dynamics of a Rank-One Perturbation of a Hermitian Matrix.” <i>Electronic Communications in Probability</i>, vol. 28, Institute of Mathematical Statistics, 2023, pp. 1–13, doi:<a href=\"https://doi.org/10.1214/23-ECP516\">10.1214/23-ECP516</a>.","ama":"Dubach G, Erdös L. Dynamics of a rank-one perturbation of a Hermitian matrix. <i>Electronic Communications in Probability</i>. 2023;28:1-13. doi:<a href=\"https://doi.org/10.1214/23-ECP516\">10.1214/23-ECP516</a>","ieee":"G. Dubach and L. Erdös, “Dynamics of a rank-one perturbation of a Hermitian matrix,” <i>Electronic Communications in Probability</i>, vol. 28. Institute of Mathematical Statistics, pp. 1–13, 2023.","short":"G. Dubach, L. Erdös, Electronic Communications in Probability 28 (2023) 1–13."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"language":[{"iso":"eng"}],"volume":28,"date_created":"2023-02-26T23:01:01Z","article_type":"original","day":"08","scopus_import":"1","author":[{"first_name":"Guillaume","orcid":"0000-0001-6892-8137","last_name":"Dubach","id":"D5C6A458-10C4-11EA-ABF4-A4B43DDC885E","full_name":"Dubach, Guillaume"},{"full_name":"Erdös, László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","last_name":"Erdös","orcid":"0000-0001-5366-9603","first_name":"László"}],"title":"Dynamics of a rank-one perturbation of a Hermitian matrix","oa_version":"Published Version","file_date_updated":"2023-02-27T09:43:27Z","publication_identifier":{"eissn":["1083-589X"]},"publication_status":"published","has_accepted_license":"1","intvolume":"        28","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"We study the eigenvalue trajectories of a time dependent matrix Gt=H+itvv∗ for t≥0, where H is an N×N Hermitian random matrix and v is a unit vector. In particular, we establish that with high probability, an outlier can be distinguished at all times t>1+N−1/3+ϵ, for any ϵ>0. The study of this natural process combines elements of Hermitian and non-Hermitian analysis, and illustrates some aspects of the intrinsic instability of (even weakly) non-Hermitian matrices."}]},{"tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)"},"abstract":[{"lang":"eng","text":"See Readme File for further information."}],"ddc":["570"],"has_accepted_license":"1","file_date_updated":"2023-02-28T06:34:12Z","oa_version":"Published Version","publisher":"Institute of Science and Technology Austria","title":"Source data for Metzler et al, 2023: Trade-offs between immunity and competitive ability in fighting ant males ","doi":"10.15479/AT:ISTA:12693","author":[{"orcid":"0000-0002-2193-3868","first_name":"Sylvia","last_name":"Cremer","full_name":"Cremer, Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87"}],"article_processing_charge":"No","day":"28","contributor":[{"contributor_type":"data_collector","first_name":"Sina","last_name":"Metzler","id":"48204546-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Kirchner","id":"21516227-15aa-11ec-9fb2-c6e8ffc155d3","first_name":"Jessica","contributor_type":"data_collector"},{"contributor_type":"data_collector","first_name":"Anna V","id":"406F989C-F248-11E8-B48F-1D18A9856A87","last_name":"Grasse"}],"type":"research_data","date_created":"2023-02-28T06:38:37Z","date_updated":"2023-12-13T11:13:13Z","_id":"12693","status":"public","oa":1,"date_published":"2023-02-28T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ama":"Cremer S. Source data for Metzler et al, 2023: Trade-offs between immunity and competitive ability in fighting ant males . 2023. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:12693\">10.15479/AT:ISTA:12693</a>","ieee":"S. Cremer, “Source data for Metzler et al, 2023: Trade-offs between immunity and competitive ability in fighting ant males .” Institute of Science and Technology Austria, 2023.","short":"S. Cremer, (2023).","ista":"Cremer S. 2023. Source data for Metzler et al, 2023: Trade-offs between immunity and competitive ability in fighting ant males , Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:12693\">10.15479/AT:ISTA:12693</a>.","chicago":"Cremer, Sylvia. “Source Data for Metzler et Al, 2023: Trade-Offs between Immunity and Competitive Ability in Fighting Ant Males .” Institute of Science and Technology Austria, 2023. <a href=\"https://doi.org/10.15479/AT:ISTA:12693\">https://doi.org/10.15479/AT:ISTA:12693</a>.","apa":"Cremer, S. (2023). Source data for Metzler et al, 2023: Trade-offs between immunity and competitive ability in fighting ant males . Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:12693\">https://doi.org/10.15479/AT:ISTA:12693</a>","mla":"Cremer, Sylvia. <i>Source Data for Metzler et Al, 2023: Trade-Offs between Immunity and Competitive Ability in Fighting Ant Males </i>. Institute of Science and Technology Austria, 2023, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:12693\">10.15479/AT:ISTA:12693</a>."},"month":"02","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"12696"}]},"year":"2023","file":[{"file_id":"12694","creator":"scremer","date_updated":"2023-02-28T06:34:08Z","file_size":77070,"date_created":"2023-02-28T06:34:08Z","checksum":"c1565d655ca05601acfd84e0d12b8563","relation":"main_file","access_level":"open_access","content_type":"application/pdf","success":1,"file_name":"Metzler_ReadMe.pdf"},{"file_id":"12695","date_updated":"2023-02-28T06:34:12Z","creator":"scremer","file_size":88001,"date_created":"2023-02-28T06:34:12Z","checksum":"75c4c4948563d6261cb7548f80d909f1","relation":"main_file","content_type":"application/vnd.openxmlformats-officedocument.spreadsheetml.sheet","access_level":"open_access","file_name":"Metzler_RepositoryData.xlsx","success":1}],"department":[{"_id":"SyCr"}]},{"ddc":["570"],"quality_controlled":"1","publisher":"Springer Nature","article_processing_charge":"Yes","doi":"10.1186/s12862-023-02137-7","type":"journal_article","_id":"12696","date_updated":"2023-12-13T11:13:14Z","publication":"BMC Ecology and Evolution","status":"public","project":[{"_id":"2649B4DE-B435-11E9-9278-68D0E5697425","name":"Epidemics in ant societies on a chip","grant_number":"771402","call_identifier":"H2020"}],"date_published":"2023-08-07T00:00:00Z","acknowledgement":"We are thankful to Mike Bidochka for the fungal strain, Lukas Schrader for sharing the C. obscurior genome data for primer development, the Lab Support Facility of ISTA for general laboratory support and help with the permit approval procedures, and the Finca El Quinto for letting us collect ants on their property. We thank the Social Immunity Team at ISTA for help with ant collection and experimental help, in particular Elina Hanhimäki and Marta Gorecka for behavioural observation, and Elisabeth Naderlinger for spore load PCRs. We further thank the Social Immunity Team and Jürgen Heinze for continued discussion and comments on the manuscript.\r\nOpen access funding provided by Institute of Science and Technology Austria (ISTA). This project received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 771402 to SC). ","ec_funded":1,"pmid":1,"related_material":{"record":[{"relation":"research_data","status":"public","id":"12693"}]},"external_id":{"pmid":["37550612"],"isi":["001042643600002"]},"year":"2023","isi":1,"acknowledged_ssus":[{"_id":"LifeSc"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"intvolume":"        23","abstract":[{"lang":"eng","text":"Background: Fighting disease while fighting rivals exposes males to constraints and tradeoffs during male-male competition. We here tested how both the stage and intensity of infection with the fungal pathogen Metarhizium robertsii interfered with fighting success in Cardiocondyla obscurior ant males. Males of this species have evolved long lifespans during which they can gain many matings with the young queens of the colony, if successful in male-male competition. Since male fights occur inside the colony, the outcome of male-male competition can further be biased by interference of the colony’s worker force.\r\nResults: We found that severe, but not yet mild, infection strongly impaired male fighting success. In late-stage infection, this could be attributed to worker aggression directed towards the infected rather than the healthy male and an already very high male morbidity even in the absence of fighting. Shortly after pathogen exposure, however, male mortality was particularly increased during combat. Since these males mounted a strong immune response, their reduced fighting success suggests a trade-off between immune investment and competitive ability already early in the infection. Even if the males themselves showed no difference in the number of attacks they raised against their healthy rivals across infection stages and levels, severely infected males were thus losing in male-male competition from an early stage of infection on.\r\nConclusions: Males of the ant C. obscurior have evolved high immune investment, triggering an effective immune response very fast after fungal exposure. This allows them to cope with mild pathogen exposures without cost to their success in male-male competition, and hence to gain multiple mating opportunities with the emerging virgin queens of the colony. Under severe infection, however, they are weak fighters and rarely survive a combat already at early infection when raising an immune response, as well as at progressed infection, when they are morbid and preferentially targeted by worker aggression. Workers thereby remove males that pose a future disease threat by biasing male-male competition. Our study thus revealed a novel social immunity mechanism how social insect workers protect the colony against disease risk."}],"has_accepted_license":"1","file_date_updated":"2023-08-14T07:51:47Z","publication_identifier":{"issn":["2730-7182"]},"publication_status":"published","oa_version":"Published Version","title":"Trade-offs between immunity and competitive ability in fighting ant males","day":"07","scopus_import":"1","author":[{"id":"48204546-F248-11E8-B48F-1D18A9856A87","full_name":"Metzler, Sina","last_name":"Metzler","first_name":"Sina","orcid":"0000-0002-9547-2494"},{"full_name":"Kirchner, Jessica","id":"21516227-15aa-11ec-9fb2-c6e8ffc155d3","last_name":"Kirchner","first_name":"Jessica"},{"first_name":"Anna V","full_name":"Grasse, Anna V","id":"406F989C-F248-11E8-B48F-1D18A9856A87","last_name":"Grasse"},{"orcid":"0000-0002-2193-3868","first_name":"Sylvia","last_name":"Cremer","full_name":"Cremer, Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87"}],"date_created":"2023-02-28T07:38:17Z","article_type":"original","volume":23,"language":[{"iso":"eng"}],"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ama":"Metzler S, Kirchner J, Grasse AV, Cremer S. Trade-offs between immunity and competitive ability in fighting ant males. <i>BMC Ecology and Evolution</i>. 2023;23. doi:<a href=\"https://doi.org/10.1186/s12862-023-02137-7\">10.1186/s12862-023-02137-7</a>","short":"S. Metzler, J. Kirchner, A.V. Grasse, S. Cremer, BMC Ecology and Evolution 23 (2023).","ieee":"S. Metzler, J. Kirchner, A. V. Grasse, and S. Cremer, “Trade-offs between immunity and competitive ability in fighting ant males,” <i>BMC Ecology and Evolution</i>, vol. 23. Springer Nature, 2023.","chicago":"Metzler, Sina, Jessica Kirchner, Anna V Grasse, and Sylvia Cremer. “Trade-Offs between Immunity and Competitive Ability in Fighting Ant Males.” <i>BMC Ecology and Evolution</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1186/s12862-023-02137-7\">https://doi.org/10.1186/s12862-023-02137-7</a>.","ista":"Metzler S, Kirchner J, Grasse AV, Cremer S. 2023. Trade-offs between immunity and competitive ability in fighting ant males. BMC Ecology and Evolution. 23, 37.","mla":"Metzler, Sina, et al. “Trade-Offs between Immunity and Competitive Ability in Fighting Ant Males.” <i>BMC Ecology and Evolution</i>, vol. 23, 37, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1186/s12862-023-02137-7\">10.1186/s12862-023-02137-7</a>.","apa":"Metzler, S., Kirchner, J., Grasse, A. V., &#38; Cremer, S. (2023). Trade-offs between immunity and competitive ability in fighting ant males. <i>BMC Ecology and Evolution</i>. Springer Nature. <a href=\"https://doi.org/10.1186/s12862-023-02137-7\">https://doi.org/10.1186/s12862-023-02137-7</a>"},"month":"08","article_number":"37","file":[{"creator":"dernst","date_updated":"2023-08-14T07:51:47Z","file_size":2004276,"date_created":"2023-08-14T07:51:47Z","file_id":"14048","access_level":"open_access","content_type":"application/pdf","success":1,"file_name":"2023_BMCEcology_Metzler.pdf","checksum":"95966dc7d242d2c85bdd4fe14233dbd8","relation":"main_file"}],"department":[{"_id":"SyCr"}]},{"day":"03","author":[{"last_name":"Grosjean","full_name":"Grosjean, Galien M","id":"0C5FDA4A-9CF6-11E9-8939-FF05E6697425","orcid":"0000-0001-5154-417X","first_name":"Galien M"},{"id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","full_name":"Waitukaitis, Scott R","last_name":"Waitukaitis","orcid":"0000-0002-2299-3176","first_name":"Scott R"}],"title":"Single-collision statistics reveal a global mechanism driven by sample history for contact electrification in granular media","oa_version":"Preprint","volume":130,"date_created":"2023-02-28T12:14:46Z","article_type":"original","has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"text":"Models for same-material contact electrification in granular media often rely on a local charge-driving parameter whose spatial variations lead to a stochastic origin for charge exchange. Measuring the charge transfer from individual granular spheres after contacts with substrates of the same material, we find instead a “global” charging behavior, coherent over the sample’s whole surface. Cleaning and baking samples fully resets charging magnitude and direction, which indicates the underlying global parameter is not intrinsic to the material, but acquired from its history. Charging behavior is randomly and irreversibly affected by changes in relative humidity, hinting at a mechanism where adsorbates, in particular, water, are fundamental to the charge-transfer process.","lang":"eng"}],"intvolume":"       130","file_date_updated":"2023-02-28T12:37:54Z","publication_status":"published","publication_identifier":{"eissn":["1079-7114"],"issn":["0031-9007"]},"month":"03","arxiv":1,"department":[{"_id":"ScWa"}],"file":[{"file_id":"12698","creator":"ggrosjea","date_updated":"2023-02-28T12:20:27Z","date_created":"2023-02-28T12:20:27Z","file_size":2301864,"checksum":"c4f2f6eea0408811f8f4898e15890355","relation":"main_file","access_level":"open_access","content_type":"application/pdf","success":1,"file_name":"Main_Preprint.pdf"},{"file_name":"Suppl_info.pdf","success":1,"content_type":"application/pdf","access_level":"open_access","relation":"main_file","checksum":"6af6ed6c97a977f923de4162294b43c4","date_created":"2023-02-28T12:20:55Z","file_size":1138625,"creator":"ggrosjea","date_updated":"2023-02-28T12:20:55Z","file_id":"12699"},{"checksum":"3f20365fb9515bdba3a111d912c8d8b4","relation":"main_file","access_level":"open_access","content_type":"video/mp4","success":1,"file_name":"Suppl_vid1.mp4","file_id":"12700","creator":"ggrosjea","date_updated":"2023-02-28T12:37:54Z","file_size":793449,"date_created":"2023-02-28T12:37:54Z"},{"success":1,"file_name":"Suppl_vid2.mp4","access_level":"open_access","content_type":"video/mp4","relation":"main_file","checksum":"90cecacbe0e2f9dea11f91a4ba20c32e","date_created":"2023-02-28T12:37:54Z","file_size":455925,"date_updated":"2023-02-28T12:37:54Z","creator":"ggrosjea","file_id":"12701"}],"article_number":"098202","oa":1,"language":[{"iso":"eng"}],"citation":{"apa":"Grosjean, G. M., &#38; Waitukaitis, S. R. (2023). Single-collision statistics reveal a global mechanism driven by sample history for contact electrification in granular media. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevlett.130.098202\">https://doi.org/10.1103/physrevlett.130.098202</a>","mla":"Grosjean, Galien M., and Scott R. Waitukaitis. “Single-Collision Statistics Reveal a Global Mechanism Driven by Sample History for Contact Electrification in Granular Media.” <i>Physical Review Letters</i>, vol. 130, no. 9, 098202, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/physrevlett.130.098202\">10.1103/physrevlett.130.098202</a>.","ista":"Grosjean GM, Waitukaitis SR. 2023. Single-collision statistics reveal a global mechanism driven by sample history for contact electrification in granular media. Physical Review Letters. 130(9), 098202.","chicago":"Grosjean, Galien M, and Scott R Waitukaitis. “Single-Collision Statistics Reveal a Global Mechanism Driven by Sample History for Contact Electrification in Granular Media.” <i>Physical Review Letters</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/physrevlett.130.098202\">https://doi.org/10.1103/physrevlett.130.098202</a>.","ieee":"G. M. Grosjean and S. R. Waitukaitis, “Single-collision statistics reveal a global mechanism driven by sample history for contact electrification in granular media,” <i>Physical Review Letters</i>, vol. 130, no. 9. American Physical Society, 2023.","short":"G.M. Grosjean, S.R. Waitukaitis, Physical Review Letters 130 (2023).","ama":"Grosjean GM, Waitukaitis SR. Single-collision statistics reveal a global mechanism driven by sample history for contact electrification in granular media. <i>Physical Review Letters</i>. 2023;130(9). doi:<a href=\"https://doi.org/10.1103/physrevlett.130.098202\">10.1103/physrevlett.130.098202</a>"},"issue":"9","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","article_processing_charge":"No","doi":"10.1103/physrevlett.130.098202","publisher":"American Physical Society","_id":"12697","date_updated":"2023-08-22T08:41:32Z","type":"journal_article","ddc":["530","537"],"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2211.02488"}],"quality_controlled":"1","year":"2023","isi":1,"related_material":{"record":[{"id":"8101","relation":"research_paper","status":"public"}]},"external_id":{"isi":["000946178200008"],"arxiv":["2211.02488"]},"keyword":["General Physics","Electrostatics","Triboelectricity","Soft Matter","Acoustic Levitation","Granular Materials"],"publication":"Physical Review Letters","status":"public","project":[{"_id":"0aa60e99-070f-11eb-9043-a6de6bdc3afa","name":"Tribocharge: a multi-scale approach to an enduring problem in physics","grant_number":"949120","call_identifier":"H2020"},{"name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"ec_funded":1,"acknowledgement":"We would like to thank Troy Shinbrot, Victor Lee and Daniele Foresti for helpful discussions. This project has received funding from the European Research Council Grant Agreement No. 949120 and from the the Marie Sk lodowska-Curie Grant Agreement No. 754411 under\r\nthe European Union’s Horizon 2020 research and innovation program.","date_published":"2023-03-03T00:00:00Z"},{"has_accepted_license":"1","intvolume":"        14","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"Hydrocarbon mixtures are extremely abundant in the Universe, and diamond formation from them can play a crucial role in shaping the interior structure and evolution of planets. With first-principles accuracy, we first estimate the melting line of diamond, and then reveal the nature of chemical bonding in hydrocarbons at extreme conditions. We finally establish the pressure-temperature phase boundary where it is thermodynamically possible for diamond to form from hydrocarbon mixtures with different atomic fractions of carbon. Notably, here we show a depletion zone at pressures above 200 GPa and temperatures below 3000 K-3500 K where diamond formation is thermodynamically favorable regardless of the carbon atomic fraction, due to a phase separation mechanism. The cooler condition of the interior of Neptune compared to Uranus means that the former is much more likely to contain the depletion zone. Our findings can help explain the dichotomy of the two ice giants manifested by the low luminosity of Uranus, and lead to a better understanding of (exo-)planetary formation and evolution."}],"file_date_updated":"2023-03-07T10:58:00Z","publication_status":"published","publication_identifier":{"eissn":["2041-1723"]},"day":"27","scopus_import":"1","author":[{"last_name":"Cheng","full_name":"Cheng, Bingqing","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","orcid":"0000-0002-3584-9632","first_name":"Bingqing"},{"last_name":"Hamel","full_name":"Hamel, Sebastien","first_name":"Sebastien"},{"first_name":"Mandy","orcid":"0000-0002-1838-2129","last_name":"Bethkenhagen","full_name":"Bethkenhagen, Mandy","id":"201939f4-803f-11ed-ab7e-d8da4bd1517f"}],"title":"Thermodynamics of diamond formation from hydrocarbon mixtures in planets","oa_version":"Published Version","volume":14,"date_created":"2023-03-05T23:01:04Z","article_type":"original","oa":1,"language":[{"iso":"eng"}],"citation":{"chicago":"Cheng, Bingqing, Sebastien Hamel, and Mandy Bethkenhagen. “Thermodynamics of Diamond Formation from Hydrocarbon Mixtures in Planets.” <i>Nature Communications</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41467-023-36841-1\">https://doi.org/10.1038/s41467-023-36841-1</a>.","ista":"Cheng B, Hamel S, Bethkenhagen M. 2023. Thermodynamics of diamond formation from hydrocarbon mixtures in planets. Nature Communications. 14, 1104.","mla":"Cheng, Bingqing, et al. “Thermodynamics of Diamond Formation from Hydrocarbon Mixtures in Planets.” <i>Nature Communications</i>, vol. 14, 1104, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1038/s41467-023-36841-1\">10.1038/s41467-023-36841-1</a>.","apa":"Cheng, B., Hamel, S., &#38; Bethkenhagen, M. (2023). Thermodynamics of diamond formation from hydrocarbon mixtures in planets. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-023-36841-1\">https://doi.org/10.1038/s41467-023-36841-1</a>","ama":"Cheng B, Hamel S, Bethkenhagen M. Thermodynamics of diamond formation from hydrocarbon mixtures in planets. <i>Nature Communications</i>. 2023;14. doi:<a href=\"https://doi.org/10.1038/s41467-023-36841-1\">10.1038/s41467-023-36841-1</a>","short":"B. Cheng, S. Hamel, M. Bethkenhagen, Nature Communications 14 (2023).","ieee":"B. Cheng, S. Hamel, and M. Bethkenhagen, “Thermodynamics of diamond formation from hydrocarbon mixtures in planets,” <i>Nature Communications</i>, vol. 14. Springer Nature, 2023."},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"02","department":[{"_id":"BiCh"}],"file":[{"checksum":"5ff61ad21511950c15abb73b18613883","relation":"main_file","content_type":"application/pdf","access_level":"open_access","file_name":"2023_NatComm_Cheng.pdf","success":1,"file_id":"12713","date_updated":"2023-03-07T10:58:00Z","creator":"cchlebak","date_created":"2023-03-07T10:58:00Z","file_size":1946443}],"article_number":"1104","ddc":["540"],"quality_controlled":"1","article_processing_charge":"No","doi":"10.1038/s41467-023-36841-1","publisher":"Springer Nature","_id":"12702","date_updated":"2023-08-01T13:36:11Z","type":"journal_article","status":"public","publication":"Nature Communications","project":[{"name":"NOMIS Fellowship Program","_id":"9B861AAC-BA93-11EA-9121-9846C619BF3A"}],"pmid":1,"date_published":"2023-02-27T00:00:00Z","acknowledgement":"BC thanks Daan Frenkel for stimulating discussions. We thank Aleks Reinhardt, Daan Frenkel, Marius Millot, Federica Coppari, Rhys Bunting, and Chris J. Pickard for critically reading the manuscript and providing useful suggestions. BC acknowledges resources provided by the Cambridge Tier-2 system operated by the University of Cambridge Research Computing Service funded by EPSRC Tier-2 capital grant EP/P020259/1. SH acknowledges support from LDRD 19-ERD-031 and computing support from the Lawrence Livermore National Laboratory (LLNL) Institutional Computing Grand Challenge program. Lawrence Livermore National Laboratory is operated by Lawrence Livermore National Security, LLC, for the U.S. Department of Energy, National Nuclear Security Administration under Contract DE-AC52-07NA27344. MB acknowledges support by the European Horizon 2020 program within the Marie Skłodowska-Curie actions (xICE grant number 894725), funding from the NOMIS foundation and computational resources at the North-German Supercomputing Alliance (HLRN) facilities.","year":"2023","isi":1,"external_id":{"isi":["000939678300002"],"pmid":["36843123"]}},{"date_updated":"2023-08-01T13:36:50Z","_id":"12704","type":"journal_article","doi":"10.1109/LRA.2023.3240930","article_processing_charge":"No","publisher":"Institute of Electrical and Electronics Engineers","quality_controlled":"1","page":"1595-1602","ddc":["000"],"year":"2023","isi":1,"external_id":{"isi":["000936534100012"],"arxiv":["2204.07373"]},"related_material":{"record":[{"status":"public","relation":"earlier_version","id":"11366"}]},"date_published":"2023-03-01T00:00:00Z","acknowledgement":"We thank Christoph Lampert for inspiring this work. The\r\nviews and conclusions contained in this document are those of\r\nthe authors and should not be interpreted as representing the\r\nofficial policies, either expressed or implied, of the United States\r\nAir Force or the U.S. Government. The U.S. Government is\r\nauthorized to reproduce and distribute reprints for Government\r\npurposes notwithstanding any copyright notation herein.","publication":"IEEE Robotics and Automation Letters","status":"public","volume":8,"article_type":"original","date_created":"2023-03-05T23:01:04Z","author":[{"id":"3DC22916-F248-11E8-B48F-1D18A9856A87","full_name":"Lechner, Mathias","last_name":"Lechner","first_name":"Mathias"},{"first_name":"Alexander","full_name":"Amini, Alexander","last_name":"Amini"},{"first_name":"Daniela","last_name":"Rus","full_name":"Rus, Daniela"},{"last_name":"Henzinger","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A","first_name":"Thomas A","orcid":"0000-0002-2985-7724"}],"scopus_import":"1","day":"01","oa_version":"Published Version","title":"Revisiting the adversarial robustness-accuracy tradeoff in robot learning","publication_status":"published","publication_identifier":{"eissn":["2377-3766"]},"file_date_updated":"2023-03-07T12:22:23Z","has_accepted_license":"1","intvolume":"         8","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"Adversarial training (i.e., training on adversarially perturbed input data) is a well-studied method for making neural networks robust to potential adversarial attacks during inference. However, the improved robustness does not come for free but rather is accompanied by a decrease in overall model accuracy and performance. Recent work has shown that, in practical robot learning applications, the effects of adversarial training do not pose a fair trade-off but inflict a net loss when measured in holistic robot performance. This work revisits the robustness-accuracy trade-off in robot learning by systematically analyzing if recent advances in robust training methods and theory in conjunction with adversarial robot learning, are capable of making adversarial training suitable for real-world robot applications. We evaluate three different robot learning tasks ranging from autonomous driving in a high-fidelity environment amenable to sim-to-real deployment to mobile robot navigation and gesture recognition. Our results demonstrate that, while these techniques make incremental improvements on the trade-off on a relative scale, the negative impact on the nominal accuracy caused by adversarial training still outweighs the improved robustness by an order of magnitude. We conclude that although progress is happening, further advances in robust learning methods are necessary before they can benefit robot learning tasks in practice."}],"department":[{"_id":"ToHe"}],"file":[{"checksum":"5a75dcd326ea66685de2b1aaec259e85","relation":"main_file","content_type":"application/pdf","access_level":"open_access","file_name":"2023_IEEERobAutLetters_Lechner.pdf","success":1,"file_id":"12714","date_updated":"2023-03-07T12:22:23Z","creator":"cchlebak","file_size":944052,"date_created":"2023-03-07T12:22:23Z"}],"arxiv":1,"month":"03","issue":"3","citation":{"short":"M. Lechner, A. Amini, D. Rus, T.A. Henzinger, IEEE Robotics and Automation Letters 8 (2023) 1595–1602.","ieee":"M. Lechner, A. Amini, D. Rus, and T. A. Henzinger, “Revisiting the adversarial robustness-accuracy tradeoff in robot learning,” <i>IEEE Robotics and Automation Letters</i>, vol. 8, no. 3. Institute of Electrical and Electronics Engineers, pp. 1595–1602, 2023.","ama":"Lechner M, Amini A, Rus D, Henzinger TA. Revisiting the adversarial robustness-accuracy tradeoff in robot learning. <i>IEEE Robotics and Automation Letters</i>. 2023;8(3):1595-1602. doi:<a href=\"https://doi.org/10.1109/LRA.2023.3240930\">10.1109/LRA.2023.3240930</a>","mla":"Lechner, Mathias, et al. “Revisiting the Adversarial Robustness-Accuracy Tradeoff in Robot Learning.” <i>IEEE Robotics and Automation Letters</i>, vol. 8, no. 3, Institute of Electrical and Electronics Engineers, 2023, pp. 1595–602, doi:<a href=\"https://doi.org/10.1109/LRA.2023.3240930\">10.1109/LRA.2023.3240930</a>.","apa":"Lechner, M., Amini, A., Rus, D., &#38; Henzinger, T. A. (2023). Revisiting the adversarial robustness-accuracy tradeoff in robot learning. <i>IEEE Robotics and Automation Letters</i>. Institute of Electrical and Electronics Engineers. <a href=\"https://doi.org/10.1109/LRA.2023.3240930\">https://doi.org/10.1109/LRA.2023.3240930</a>","ista":"Lechner M, Amini A, Rus D, Henzinger TA. 2023. Revisiting the adversarial robustness-accuracy tradeoff in robot learning. IEEE Robotics and Automation Letters. 8(3), 1595–1602.","chicago":"Lechner, Mathias, Alexander Amini, Daniela Rus, and Thomas A Henzinger. “Revisiting the Adversarial Robustness-Accuracy Tradeoff in Robot Learning.” <i>IEEE Robotics and Automation Letters</i>. Institute of Electrical and Electronics Engineers, 2023. <a href=\"https://doi.org/10.1109/LRA.2023.3240930\">https://doi.org/10.1109/LRA.2023.3240930</a>."},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa":1,"language":[{"iso":"eng"}]},{"publication_status":"published","publication_identifier":{"eissn":["1089-7690"],"issn":["0021-9606"]},"abstract":[{"text":"The elasticity of disordered and polydisperse polymer networks is a fundamental problem of soft matter physics that is still open. Here, we self-assemble polymer networks via simulations of a mixture of bivalent and tri- or tetravalent patchy particles, which result in an exponential strand length distribution analogous to that of experimental randomly cross-linked systems. After assembly, the network connectivity and topology are frozen and the resulting system is characterized. We find that the fractal structure of the network depends on the number density at which the assembly has been carried out, but that systems with the same mean valence and same assembly density have the same structural properties. Moreover, we compute the long-time limit of the mean-squared displacement, also known as the (squared) localization length, of the cross-links and of the middle monomers of the strands, showing that the dynamics of long strands is well described by the tube model. Finally, we find a relation connecting these two localization lengths at high density and connect the cross-link localization length to the shear modulus of the system.","lang":"eng"}],"intvolume":"       158","volume":158,"date_created":"2023-03-05T23:01:05Z","article_type":"original","day":"21","scopus_import":"1","author":[{"orcid":"0000-0002-9645-6576","first_name":"Valerio","id":"ef8a92cb-c7b6-11ec-8bea-e1fd5847bc5b","full_name":"Sorichetti, Valerio","last_name":"Sorichetti"},{"first_name":"Andrea","full_name":"Ninarello, Andrea","last_name":"Ninarello"},{"first_name":"José","last_name":"Ruiz-Franco","full_name":"Ruiz-Franco, José"},{"last_name":"Hugouvieux","full_name":"Hugouvieux, Virginie","first_name":"Virginie"},{"last_name":"Zaccarelli","full_name":"Zaccarelli, Emanuela","first_name":"Emanuela"},{"last_name":"Micheletti","full_name":"Micheletti, Cristian","first_name":"Cristian"},{"last_name":"Kob","full_name":"Kob, Walter","first_name":"Walter"},{"full_name":"Rovigatti, Lorenzo","last_name":"Rovigatti","first_name":"Lorenzo"}],"oa_version":"Preprint","title":"Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks","citation":{"short":"V. Sorichetti, A. Ninarello, J. Ruiz-Franco, V. Hugouvieux, E. Zaccarelli, C. Micheletti, W. Kob, L. Rovigatti, Journal of Chemical Physics 158 (2023).","ieee":"V. Sorichetti <i>et al.</i>, “Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks,” <i>Journal of Chemical Physics</i>, vol. 158, no. 7. American Institute of Physics, 2023.","ama":"Sorichetti V, Ninarello A, Ruiz-Franco J, et al. Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks. <i>Journal of Chemical Physics</i>. 2023;158(7). doi:<a href=\"https://doi.org/10.1063/5.0134271\">10.1063/5.0134271</a>","mla":"Sorichetti, Valerio, et al. “Structure and Elasticity of Model Disordered, Polydisperse, and Defect-Free Polymer Networks.” <i>Journal of Chemical Physics</i>, vol. 158, no. 7, 074905, American Institute of Physics, 2023, doi:<a href=\"https://doi.org/10.1063/5.0134271\">10.1063/5.0134271</a>.","apa":"Sorichetti, V., Ninarello, A., Ruiz-Franco, J., Hugouvieux, V., Zaccarelli, E., Micheletti, C., … Rovigatti, L. (2023). Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks. <i>Journal of Chemical Physics</i>. American Institute of Physics. <a href=\"https://doi.org/10.1063/5.0134271\">https://doi.org/10.1063/5.0134271</a>","chicago":"Sorichetti, Valerio, Andrea Ninarello, José Ruiz-Franco, Virginie Hugouvieux, Emanuela Zaccarelli, Cristian Micheletti, Walter Kob, and Lorenzo Rovigatti. “Structure and Elasticity of Model Disordered, Polydisperse, and Defect-Free Polymer Networks.” <i>Journal of Chemical Physics</i>. American Institute of Physics, 2023. <a href=\"https://doi.org/10.1063/5.0134271\">https://doi.org/10.1063/5.0134271</a>.","ista":"Sorichetti V, Ninarello A, Ruiz-Franco J, Hugouvieux V, Zaccarelli E, Micheletti C, Kob W, Rovigatti L. 2023. Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks. Journal of Chemical Physics. 158(7), 074905."},"issue":"7","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"language":[{"iso":"eng"}],"department":[{"_id":"AnSa"}],"article_number":"074905","month":"02","arxiv":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2211.04810"}],"quality_controlled":"1","_id":"12705","date_updated":"2023-10-03T11:31:51Z","type":"journal_article","article_processing_charge":"No","doi":"10.1063/5.0134271","publisher":"American Institute of Physics","pmid":1,"acknowledgement":"We thank Michael Lang for helpful discussions. We acknowledge financial support from the European Research Council (ERC Consolidator Grant No. 681597, MIMIC) and from LabEx NUMEV (Grant No. ANR-10-LABX-20) funded by the “Investissements d’Avenir” French Government program, managed by the French National Research Agency (ANR). W.K. is a senior member of the Institut Universitaire de France.","date_published":"2023-02-21T00:00:00Z","status":"public","publication":"Journal of Chemical Physics","isi":1,"year":"2023","external_id":{"arxiv":["2211.04810"],"isi":["000936943800002"],"pmid":["36813705"]}},{"page":"e0279838","ddc":["000"],"quality_controlled":"1","doi":"10.1371/journal.pone.0279838","article_processing_charge":"No","publisher":"Public Library of Science","date_updated":"2023-10-17T12:53:30Z","_id":"12706","type":"journal_article","publication":"PLoS One","status":"public","pmid":1,"date_published":"2023-02-27T00:00:00Z","acknowledgement":"This research was supported by an Australian Government Research Training Program\r\n(RTP) Scholarship to JCM (https://www.dese.gov.au), and LB is supported by the Centre de\r\nrecherche sur le vieillissement Fellowship Program. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.","year":"2023","isi":1,"external_id":{"pmid":["36848357"],"isi":["000996122900022"]},"has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"Allometric settings of population dynamics models are appealing due to their parsimonious nature and broad utility when studying system level effects. Here, we parameterise the size-scaled Rosenzweig-MacArthur differential equations to eliminate prey-mass dependency, facilitating an in depth analytic study of the equations which incorporates scaling parameters’ contributions to coexistence. We define the functional response term to match empirical findings, and examine situations where metabolic theory derivations and observation diverge. The dynamical properties of the Rosenzweig-MacArthur system, encompassing the distribution of size-abundance equilibria, the scaling of period and amplitude of population cycling, and relationships between predator and prey abundances, are consistent with empirical observation. Our parameterisation is an accurate minimal model across 15+ orders of mass magnitude."}],"intvolume":"        18","publication_status":"published","publication_identifier":{"eissn":["1932-6203"]},"file_date_updated":"2023-03-07T10:26:45Z","author":[{"first_name":"Jody C.","last_name":"Mckerral","full_name":"Mckerral, Jody C."},{"first_name":"Maria","full_name":"Kleshnina, Maria","id":"4E21749C-F248-11E8-B48F-1D18A9856A87","last_name":"Kleshnina"},{"first_name":"Vladimir","full_name":"Ejov, Vladimir","last_name":"Ejov"},{"first_name":"Louise","last_name":"Bartle","full_name":"Bartle, Louise"},{"last_name":"Mitchell","full_name":"Mitchell, James G.","first_name":"James G."},{"first_name":"Jerzy A.","full_name":"Filar, Jerzy A.","last_name":"Filar"}],"day":"27","scopus_import":"1","title":"Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations","oa_version":"Published Version","volume":18,"article_type":"original","date_created":"2023-03-05T23:01:05Z","oa":1,"language":[{"iso":"eng"}],"issue":"2","citation":{"short":"J.C. Mckerral, M. Kleshnina, V. Ejov, L. Bartle, J.G. Mitchell, J.A. Filar, PLoS One 18 (2023) e0279838.","ieee":"J. C. Mckerral, M. Kleshnina, V. Ejov, L. Bartle, J. G. Mitchell, and J. A. Filar, “Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations,” <i>PLoS One</i>, vol. 18, no. 2. Public Library of Science, p. e0279838, 2023.","ama":"Mckerral JC, Kleshnina M, Ejov V, Bartle L, Mitchell JG, Filar JA. Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations. <i>PLoS One</i>. 2023;18(2):e0279838. doi:<a href=\"https://doi.org/10.1371/journal.pone.0279838\">10.1371/journal.pone.0279838</a>","mla":"Mckerral, Jody C., et al. “Empirical Parameterisation and Dynamical Analysis of the Allometric Rosenzweig-MacArthur Equations.” <i>PLoS One</i>, vol. 18, no. 2, Public Library of Science, 2023, p. e0279838, doi:<a href=\"https://doi.org/10.1371/journal.pone.0279838\">10.1371/journal.pone.0279838</a>.","apa":"Mckerral, J. C., Kleshnina, M., Ejov, V., Bartle, L., Mitchell, J. G., &#38; Filar, J. A. (2023). Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations. <i>PLoS One</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0279838\">https://doi.org/10.1371/journal.pone.0279838</a>","chicago":"Mckerral, Jody C., Maria Kleshnina, Vladimir Ejov, Louise Bartle, James G. Mitchell, and Jerzy A. Filar. “Empirical Parameterisation and Dynamical Analysis of the Allometric Rosenzweig-MacArthur Equations.” <i>PLoS One</i>. Public Library of Science, 2023. <a href=\"https://doi.org/10.1371/journal.pone.0279838\">https://doi.org/10.1371/journal.pone.0279838</a>.","ista":"Mckerral JC, Kleshnina M, Ejov V, Bartle L, Mitchell JG, Filar JA. 2023. Empirical parameterisation and dynamical analysis of the allometric Rosenzweig-MacArthur equations. PLoS One. 18(2), e0279838."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"02","department":[{"_id":"KrCh"}],"file":[{"creator":"cchlebak","date_updated":"2023-03-07T10:26:45Z","file_size":1257003,"date_created":"2023-03-07T10:26:45Z","file_id":"12712","access_level":"open_access","content_type":"application/pdf","success":1,"file_name":"2023_PLOSOne_Mckerral.pdf","checksum":"798ed5739a4117b03173e5d56e0534c9","relation":"main_file"}]},{"oa":1,"language":[{"iso":"eng"}],"citation":{"chicago":"Erdös, László, and Yuanyuan Xu. “Small Deviation Estimates for the Largest Eigenvalue of Wigner Matrices.” <i>Bernoulli</i>. Bernoulli Society for Mathematical Statistics and Probability, 2023. <a href=\"https://doi.org/10.3150/22-BEJ1490\">https://doi.org/10.3150/22-BEJ1490</a>.","ista":"Erdös L, Xu Y. 2023. Small deviation estimates for the largest eigenvalue of Wigner matrices. Bernoulli. 29(2), 1063–1079.","apa":"Erdös, L., &#38; Xu, Y. (2023). Small deviation estimates for the largest eigenvalue of Wigner matrices. <i>Bernoulli</i>. Bernoulli Society for Mathematical Statistics and Probability. <a href=\"https://doi.org/10.3150/22-BEJ1490\">https://doi.org/10.3150/22-BEJ1490</a>","mla":"Erdös, László, and Yuanyuan Xu. “Small Deviation Estimates for the Largest Eigenvalue of Wigner Matrices.” <i>Bernoulli</i>, vol. 29, no. 2, Bernoulli Society for Mathematical Statistics and Probability, 2023, pp. 1063–79, doi:<a href=\"https://doi.org/10.3150/22-BEJ1490\">10.3150/22-BEJ1490</a>.","ama":"Erdös L, Xu Y. Small deviation estimates for the largest eigenvalue of Wigner matrices. <i>Bernoulli</i>. 2023;29(2):1063-1079. doi:<a href=\"https://doi.org/10.3150/22-BEJ1490\">10.3150/22-BEJ1490</a>","ieee":"L. Erdös and Y. Xu, “Small deviation estimates for the largest eigenvalue of Wigner matrices,” <i>Bernoulli</i>, vol. 29, no. 2. Bernoulli Society for Mathematical Statistics and Probability, pp. 1063–1079, 2023.","short":"L. Erdös, Y. Xu, Bernoulli 29 (2023) 1063–1079."},"issue":"2","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","arxiv":1,"month":"05","department":[{"_id":"LaEr"}],"intvolume":"        29","abstract":[{"text":"We establish precise right-tail small deviation estimates for the largest eigenvalue of real symmetric and complex Hermitian matrices whose entries are independent random variables with uniformly bounded moments. The proof relies on a Green function comparison along a continuous interpolating matrix flow for a long time. Less precise estimates are also obtained in the left tail.","lang":"eng"}],"publication_status":"published","publication_identifier":{"issn":["1350-7265"]},"scopus_import":"1","day":"01","author":[{"last_name":"Erdös","full_name":"Erdös, László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603","first_name":"László"},{"orcid":"0000-0003-1559-1205","first_name":"Yuanyuan","full_name":"Xu, Yuanyuan","id":"7902bdb1-a2a4-11eb-a164-c9216f71aea3","last_name":"Xu"}],"oa_version":"Preprint","title":"Small deviation estimates for the largest eigenvalue of Wigner matrices","volume":29,"date_created":"2023-03-05T23:01:05Z","article_type":"original","status":"public","publication":"Bernoulli","project":[{"_id":"62796744-2b32-11ec-9570-940b20777f1d","call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331"}],"ec_funded":1,"date_published":"2023-05-01T00:00:00Z","isi":1,"year":"2023","external_id":{"isi":["000947270100008"],"arxiv":["2112.12093 "]},"page":"1063-1079","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2112.12093"}],"quality_controlled":"1","article_processing_charge":"No","doi":"10.3150/22-BEJ1490","publisher":"Bernoulli Society for Mathematical Statistics and Probability","_id":"12707","date_updated":"2023-10-04T10:21:07Z","type":"journal_article"},{"type":"journal_article","date_updated":"2023-08-01T13:28:39Z","_id":"12708","publisher":"Royal Society of Chemistry","doi":"10.1039/d2sm01562e","article_processing_charge":"No","quality_controlled":"1","ddc":["540"],"page":"1695-1704","external_id":{"isi":["000940388100001"],"arxiv":["2204.10059"]},"year":"2023","isi":1,"date_published":"2023-02-06T00:00:00Z","acknowledgement":"All authors are grateful to the Lorentz Center for providing a venue for stimulating scientific discussions and to sponsor a workshop on the topic of “Self-organisation under confinement” along with the 4TU Federation, the J. M. Burgers Center for Fluid Dynamics and the MESA+ Institute for Nanotechnology at the University of Twente. The authors are also grateful to Paolo Malgaretti, Federico Toschi, Twan Wilting and Jaap den Toonder for valuable feedback. N. A. acknowledges financial support from the Portuguese Foundation for Science and Technology (FCT) under Contracts no. PTDC/FIS-MAC/28146/2017 (LISBOA-01-0145-FEDER-028146), UIDB/00618/2020, and UIDP/00618/2020. L. M. C. J. acknowledges financial support from the Netherlands Organisation for Scientific Research (NWO) through a START-UP, Physics Projectruimte, and Vidi grant. I. C. was supported in part by a grant from by the Army Research Office (ARO W911NF-18-1-0032) and the Cornell Center for Materials Research (DMR-1719875). O. D. acknowledges funding by the Agence Nationale pour la Recherche under Grant No ANR-18-CE33-0006 MSR. M. D. acknowledges financial support from the European Research Council (Grant No. ERC-2019-ADV-H2020 884902 SoftML). W. M. D. acknowledges funding from a BBSRC New Investigator Grant (BB/R018383/1). S. G. was supported by DARPA Young Faculty Award # D19AP00046, and NSF IIS grant # 1955210. H. G. acknowledges financial support from the Netherlands Organisation for Scientific Research (NWO) through Veni Grant No. 680-47-451. R. G. acknowledges support from the Max Planck School Matter to Life and the MaxSynBio Consortium, which are jointly funded by the Federal Ministry of Education and Research (BMBF) of Germany, and the Max Planck Society. L. I. acknowledges funding from the Horizon Europe ERC Consolidator Grant ACTIVE_ ADAPTIVE (Grant No. 101001514). G. H. K. gratefully acknowledges the NWO Talent Programme which is financed by the Dutch Research Council (project number VI.C.182.004). H. L. and N. V. acknowledge funding from the Deutsche Forschungsgemeinschaft (DFG) under grant numbers VO 1824/8-1 and LO 418/22-1. R. M. acknowledges funding from the Deutsche Forschungsgemeinschaft (DFG) under grant number ME 1535/13-1 and ME 1535/16-1. M. P. acknowledges funding from the Ramón y Cajal Program, grant no. RYC-2018-02534, and the Leverhulme Trust, grant no. RPG-2018-345. A. Š. acknowledges financial support from the European Research Council (Grant No. ERC-2018-STG-H2020 802960 NEPA). A. S. acknowledges funding from an ATTRACT Investigator Grant (No. A17/MS/11572821/MBRACE) from the Luxembourg National Research Fund. C. S. acknowledges funding from the French Agence Nationale pour la Recherche (ANR), grant ANR-14-CE090006 and ANR-12-BSV5001401, by the Fondation pour la Recherche Médicale (FRM), grant DEQ20120323737, and from the PIC3I of Institut Curie, France. I. T. acknowledges funding from grant IED2019-00058I/AEI/10.13039/501100011033. M. P. and I. T. also acknowledge funding from grant PID2019-104232B-I00/AEI/10.13039/501100011033 and from the H2020 MSCA ITN PHYMOT (Grant agreement No 95591). I. Z. acknowledges funding from Project PID2020-114839GB-I00 MINECO/AEI/FEDER, UE. A. M. acknowledges funding from the European Research Council, Starting Grant No. 678573 NanoPacks. G. V. acknowledges sponsorship for this work by the US Office of Naval Research Global (Award No. N62909-18-1-2170).","ec_funded":1,"project":[{"_id":"eba2549b-77a9-11ec-83b8-a81e493eae4e","call_identifier":"H2020","grant_number":"802960","name":"Non-Equilibrium Protein Assembly: from Building Blocks to Biological Machines"}],"publication":"Soft Matter","status":"public","article_type":"original","date_created":"2023-03-05T23:01:06Z","volume":19,"title":"Steering self-organisation through confinement","oa_version":"Published Version","author":[{"full_name":"Araújo, Nuno A.M.","last_name":"Araújo","first_name":"Nuno A.M."},{"first_name":"Liesbeth M.C.","last_name":"Janssen","full_name":"Janssen, Liesbeth M.C."},{"first_name":"Thomas","last_name":"Barois","full_name":"Barois, Thomas"},{"last_name":"Boffetta","full_name":"Boffetta, Guido","first_name":"Guido"},{"first_name":"Itai","last_name":"Cohen","full_name":"Cohen, Itai"},{"last_name":"Corbetta","full_name":"Corbetta, Alessandro","first_name":"Alessandro"},{"first_name":"Olivier","full_name":"Dauchot, Olivier","last_name":"Dauchot"},{"full_name":"Dijkstra, Marjolein","last_name":"Dijkstra","first_name":"Marjolein"},{"full_name":"Durham, William M.","last_name":"Durham","first_name":"William M."},{"first_name":"Audrey","last_name":"Dussutour","full_name":"Dussutour, Audrey"},{"last_name":"Garnier","full_name":"Garnier, Simon","first_name":"Simon"},{"first_name":"Hanneke","full_name":"Gelderblom, Hanneke","last_name":"Gelderblom"},{"full_name":"Golestanian, Ramin","last_name":"Golestanian","first_name":"Ramin"},{"full_name":"Isa, Lucio","last_name":"Isa","first_name":"Lucio"},{"first_name":"Gijsje H.","full_name":"Koenderink, Gijsje H.","last_name":"Koenderink"},{"full_name":"Löwen, Hartmut","last_name":"Löwen","first_name":"Hartmut"},{"last_name":"Metzler","full_name":"Metzler, Ralf","first_name":"Ralf"},{"last_name":"Polin","full_name":"Polin, Marco","first_name":"Marco"},{"first_name":"C. Patrick","full_name":"Royall, C. Patrick","last_name":"Royall"},{"orcid":"0000-0002-7854-2139","first_name":"Anđela","full_name":"Šarić, Anđela","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","last_name":"Šarić"},{"last_name":"Sengupta","full_name":"Sengupta, Anupam","first_name":"Anupam"},{"first_name":"Cécile","full_name":"Sykes, Cécile","last_name":"Sykes"},{"first_name":"Vito","full_name":"Trianni, Vito","last_name":"Trianni"},{"full_name":"Tuval, Idan","last_name":"Tuval","first_name":"Idan"},{"last_name":"Vogel","full_name":"Vogel, Nicolas","first_name":"Nicolas"},{"full_name":"Yeomans, Julia M.","last_name":"Yeomans","first_name":"Julia M."},{"full_name":"Zuriguel, Iker","last_name":"Zuriguel","first_name":"Iker"},{"last_name":"Marin","full_name":"Marin, Alvaro","first_name":"Alvaro"},{"first_name":"Giorgio","full_name":"Volpe, Giorgio","last_name":"Volpe"}],"scopus_import":"1","day":"06","publication_status":"published","publication_identifier":{"eissn":["1744-6848"],"issn":["1744-683X"]},"file_date_updated":"2023-03-07T09:19:41Z","intvolume":"        19","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"Self-organisation is the spontaneous emergence of spatio-temporal structures and patterns from the interaction of smaller individual units. Examples are found across many scales in very different systems and scientific disciplines, from physics, materials science and robotics to biology, geophysics and astronomy. Recent research has highlighted how self-organisation can be both mediated and controlled by confinement. Confinement is an action over a system that limits its units’ translational and rotational degrees of freedom, thus also influencing the system's phase space probability density; it can function as either a catalyst or inhibitor of self-organisation. Confinement can then become a means to actively steer the emergence or suppression of collective phenomena in space and time. Here, to provide a common framework and perspective for future research, we examine the role of confinement in the self-organisation of soft-matter systems and identify overarching scientific challenges that need to be addressed to harness its full scientific and technological potential in soft matter and related fields. By drawing analogies with other disciplines, this framework will accelerate a common deeper understanding of self-organisation and trigger the development of innovative strategies to steer it using confinement, with impact on, e.g., the design of smarter materials, tissue engineering for biomedicine and in guiding active matter."}],"has_accepted_license":"1","file":[{"file_size":3581939,"date_created":"2023-03-07T09:19:41Z","date_updated":"2023-03-07T09:19:41Z","creator":"cchlebak","file_id":"12711","success":1,"file_name":"2023_SoftMatter_Araujo.pdf","access_level":"open_access","content_type":"application/pdf","relation":"main_file","checksum":"af95aa18b9b01e32fb8f13477c0e2687"}],"department":[{"_id":"AnSa"}],"arxiv":1,"month":"02","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"ama":"Araújo NAM, Janssen LMC, Barois T, et al. Steering self-organisation through confinement. <i>Soft Matter</i>. 2023;19:1695-1704. doi:<a href=\"https://doi.org/10.1039/d2sm01562e\">10.1039/d2sm01562e</a>","short":"N.A.M. Araújo, L.M.C. Janssen, T. Barois, G. Boffetta, I. Cohen, A. Corbetta, O. Dauchot, M. Dijkstra, W.M. Durham, A. Dussutour, S. Garnier, H. Gelderblom, R. Golestanian, L. Isa, G.H. Koenderink, H. Löwen, R. Metzler, M. Polin, C.P. Royall, A. Šarić, A. Sengupta, C. Sykes, V. Trianni, I. Tuval, N. Vogel, J.M. Yeomans, I. Zuriguel, A. Marin, G. Volpe, Soft Matter 19 (2023) 1695–1704.","ieee":"N. A. M. Araújo <i>et al.</i>, “Steering self-organisation through confinement,” <i>Soft Matter</i>, vol. 19. Royal Society of Chemistry, pp. 1695–1704, 2023.","chicago":"Araújo, Nuno A.M., Liesbeth M.C. Janssen, Thomas Barois, Guido Boffetta, Itai Cohen, Alessandro Corbetta, Olivier Dauchot, et al. “Steering Self-Organisation through Confinement.” <i>Soft Matter</i>. Royal Society of Chemistry, 2023. <a href=\"https://doi.org/10.1039/d2sm01562e\">https://doi.org/10.1039/d2sm01562e</a>.","ista":"Araújo NAM, Janssen LMC, Barois T, Boffetta G, Cohen I, Corbetta A, Dauchot O, Dijkstra M, Durham WM, Dussutour A, Garnier S, Gelderblom H, Golestanian R, Isa L, Koenderink GH, Löwen H, Metzler R, Polin M, Royall CP, Šarić A, Sengupta A, Sykes C, Trianni V, Tuval I, Vogel N, Yeomans JM, Zuriguel I, Marin A, Volpe G. 2023. Steering self-organisation through confinement. Soft Matter. 19, 1695–1704.","mla":"Araújo, Nuno A. M., et al. “Steering Self-Organisation through Confinement.” <i>Soft Matter</i>, vol. 19, Royal Society of Chemistry, 2023, pp. 1695–704, doi:<a href=\"https://doi.org/10.1039/d2sm01562e\">10.1039/d2sm01562e</a>.","apa":"Araújo, N. A. M., Janssen, L. M. C., Barois, T., Boffetta, G., Cohen, I., Corbetta, A., … Volpe, G. (2023). Steering self-organisation through confinement. <i>Soft Matter</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/d2sm01562e\">https://doi.org/10.1039/d2sm01562e</a>"},"language":[{"iso":"eng"}],"oa":1},{"has_accepted_license":"1","abstract":[{"text":"Given a finite set A ⊂ ℝ^d, let Cov_{r,k} denote the set of all points within distance r to at least k points of A. Allowing r and k to vary, we obtain a 2-parameter family of spaces that grow larger when r increases or k decreases, called the multicover bifiltration. Motivated by the problem of computing the homology of this bifiltration, we introduce two closely related combinatorial bifiltrations, one polyhedral and the other simplicial, which are both topologically equivalent to the multicover bifiltration and far smaller than a Čech-based model considered in prior work of Sheehy. Our polyhedral construction is a bifiltration of the rhomboid tiling of Edelsbrunner and Osang, and can be efficiently computed using a variant of an algorithm given by these authors as well. Using an implementation for dimension 2 and 3, we provide experimental results. Our simplicial construction is useful for understanding the polyhedral construction and proving its correctness.","lang":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"intvolume":"        70","publication_identifier":{"issn":["0179-5376"],"eissn":["1432-0444"]},"publication_status":"published","file_date_updated":"2023-03-07T14:40:14Z","author":[{"first_name":"René","full_name":"Corbet, René","last_name":"Corbet"},{"id":"36E4574A-F248-11E8-B48F-1D18A9856A87","full_name":"Kerber, Michael","last_name":"Kerber","first_name":"Michael","orcid":"0000-0002-8030-9299"},{"first_name":"Michael","full_name":"Lesnick, Michael","last_name":"Lesnick"},{"last_name":"Osang","id":"464B40D6-F248-11E8-B48F-1D18A9856A87","full_name":"Osang, Georg F","first_name":"Georg F","orcid":"0000-0002-8882-5116"}],"scopus_import":"1","day":"01","title":"Computing the multicover bifiltration","oa_version":"Published Version","volume":70,"article_type":"original","date_created":"2023-03-05T23:01:06Z","oa":1,"language":[{"iso":"eng"}],"citation":{"ieee":"R. Corbet, M. Kerber, M. Lesnick, and G. F. Osang, “Computing the multicover bifiltration,” <i>Discrete and Computational Geometry</i>, vol. 70. Springer Nature, pp. 376–405, 2023.","short":"R. Corbet, M. Kerber, M. Lesnick, G.F. Osang, Discrete and Computational Geometry 70 (2023) 376–405.","ama":"Corbet R, Kerber M, Lesnick M, Osang GF. Computing the multicover bifiltration. <i>Discrete and Computational Geometry</i>. 2023;70:376-405. doi:<a href=\"https://doi.org/10.1007/s00454-022-00476-8\">10.1007/s00454-022-00476-8</a>","apa":"Corbet, R., Kerber, M., Lesnick, M., &#38; Osang, G. F. (2023). Computing the multicover bifiltration. <i>Discrete and Computational Geometry</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00454-022-00476-8\">https://doi.org/10.1007/s00454-022-00476-8</a>","mla":"Corbet, René, et al. “Computing the Multicover Bifiltration.” <i>Discrete and Computational Geometry</i>, vol. 70, Springer Nature, 2023, pp. 376–405, doi:<a href=\"https://doi.org/10.1007/s00454-022-00476-8\">10.1007/s00454-022-00476-8</a>.","chicago":"Corbet, René, Michael Kerber, Michael Lesnick, and Georg F Osang. “Computing the Multicover Bifiltration.” <i>Discrete and Computational Geometry</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s00454-022-00476-8\">https://doi.org/10.1007/s00454-022-00476-8</a>.","ista":"Corbet R, Kerber M, Lesnick M, Osang GF. 2023. Computing the multicover bifiltration. Discrete and Computational Geometry. 70, 376–405."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"09","arxiv":1,"department":[{"_id":"HeEd"}],"file":[{"date_created":"2023-03-07T14:40:14Z","file_size":1359323,"creator":"cchlebak","date_updated":"2023-03-07T14:40:14Z","file_id":"12715","success":1,"file_name":"2023_DisCompGeo_Corbet.pdf","access_level":"open_access","content_type":"application/pdf","relation":"main_file","checksum":"71ce7e59f7ee4620acc704fecca620c2"}],"page":"376-405","ddc":["000"],"quality_controlled":"1","doi":"10.1007/s00454-022-00476-8","article_processing_charge":"Yes (via OA deal)","publisher":"Springer Nature","date_updated":"2023-10-04T12:03:40Z","_id":"12709","type":"journal_article","publication":"Discrete and Computational Geometry","status":"public","date_published":"2023-09-01T00:00:00Z","acknowledgement":"We thank the anonymous reviewers for many helpful comments and suggestions, which led to substantial improvements of the paper. The first two authors were supported by the Austrian Science Fund (FWF) grant number P 29984-N35 and W1230. The first author was partly supported by an Austrian Marshall Plan Scholarship, and by the Brummer & Partners MathDataLab. A conference version of this paper was presented at the 37th International Symposium on Computational Geometry (SoCG 2021). Open access funding provided by the Royal Institute of Technology.","year":"2023","isi":1,"external_id":{"arxiv":["2103.07823"],"isi":["000936496800001"]},"related_material":{"record":[{"id":"9605","relation":"earlier_version","status":"public"}]}},{"has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"Surface curvature both emerges from, and influences the behavior of, living objects at length scales ranging from cell membranes to single cells to tissues and organs. The relevance of surface curvature in biology is supported by numerous experimental and theoretical investigations in recent years. In this review, first, a brief introduction to the key ideas of surface curvature in the context of biological systems is given and the challenges that arise when measuring surface curvature are discussed. Giving an overview of the emergence of curvature in biological systems, its significance at different length scales becomes apparent. On the other hand, summarizing current findings also shows that both single cells and entire cell sheets, tissues or organisms respond to curvature by modulating their shape and their migration behavior. Finally, the interplay between the distribution of morphogens or micro-organisms and the emergence of curvature across length scales is addressed with examples demonstrating these key mechanistic principles of morphogenesis. Overall, this review highlights that curved interfaces are not merely a passive by-product of the chemical, biological, and mechanical processes but that curvature acts also as a signal that co-determines these processes."}],"intvolume":"        35","publication_identifier":{"eissn":["1521-4095"],"issn":["0935-9648"]},"publication_status":"published","file_date_updated":"2023-09-26T10:51:56Z","author":[{"last_name":"Schamberger","full_name":"Schamberger, Barbara","first_name":"Barbara"},{"first_name":"Ricardo","full_name":"Ziege, Ricardo","last_name":"Ziege"},{"first_name":"Karine","full_name":"Anselme, Karine","last_name":"Anselme"},{"first_name":"Martine","full_name":"Ben Amar, Martine","last_name":"Ben Amar"},{"first_name":"Michał","last_name":"Bykowski","full_name":"Bykowski, Michał"},{"last_name":"Castro","full_name":"Castro, André P.G.","first_name":"André P.G."},{"last_name":"Cipitria","full_name":"Cipitria, Amaia","first_name":"Amaia"},{"first_name":"Rhoslyn A.","full_name":"Coles, Rhoslyn A.","last_name":"Coles"},{"first_name":"Rumiana","last_name":"Dimova","full_name":"Dimova, Rumiana"},{"last_name":"Eder","full_name":"Eder, Michaela","first_name":"Michaela"},{"last_name":"Ehrig","full_name":"Ehrig, Sebastian","first_name":"Sebastian"},{"full_name":"Escudero, Luis M.","last_name":"Escudero","first_name":"Luis M."},{"first_name":"Myfanwy E.","last_name":"Evans","full_name":"Evans, Myfanwy E."},{"first_name":"Paulo R.","last_name":"Fernandes","full_name":"Fernandes, Paulo R."},{"last_name":"Fratzl","full_name":"Fratzl, Peter","first_name":"Peter"},{"full_name":"Geris, Liesbet","last_name":"Geris","first_name":"Liesbet"},{"first_name":"Notburga","last_name":"Gierlinger","full_name":"Gierlinger, Notburga"},{"id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","full_name":"Hannezo, Edouard B","last_name":"Hannezo","orcid":"0000-0001-6005-1561","first_name":"Edouard B"},{"first_name":"Aleš","last_name":"Iglič","full_name":"Iglič, Aleš"},{"first_name":"Jacob J.K.","last_name":"Kirkensgaard","full_name":"Kirkensgaard, Jacob J.K."},{"first_name":"Philip","last_name":"Kollmannsberger","full_name":"Kollmannsberger, Philip"},{"first_name":"Łucja","last_name":"Kowalewska","full_name":"Kowalewska, Łucja"},{"first_name":"Nicholas A.","full_name":"Kurniawan, Nicholas A.","last_name":"Kurniawan"},{"full_name":"Papantoniou, Ioannis","last_name":"Papantoniou","first_name":"Ioannis"},{"first_name":"Laurent","full_name":"Pieuchot, Laurent","last_name":"Pieuchot"},{"first_name":"Tiago H.V.","full_name":"Pires, Tiago H.V.","last_name":"Pires"},{"last_name":"Renner","full_name":"Renner, Lars D.","first_name":"Lars D."},{"last_name":"Sageman-Furnas","full_name":"Sageman-Furnas, Andrew O.","first_name":"Andrew O."},{"first_name":"Gerd E.","full_name":"Schröder-Turk, Gerd E.","last_name":"Schröder-Turk"},{"last_name":"Sengupta","full_name":"Sengupta, Anupam","first_name":"Anupam"},{"first_name":"Vikas R.","last_name":"Sharma","full_name":"Sharma, Vikas R."},{"first_name":"Antonio","last_name":"Tagua","full_name":"Tagua, Antonio"},{"full_name":"Tomba, Caterina","last_name":"Tomba","first_name":"Caterina"},{"first_name":"Xavier","last_name":"Trepat","full_name":"Trepat, Xavier"},{"full_name":"Waters, Sarah L.","last_name":"Waters","first_name":"Sarah L."},{"last_name":"Yeo","full_name":"Yeo, Edwina F.","first_name":"Edwina F."},{"first_name":"Andreas","full_name":"Roschger, Andreas","last_name":"Roschger"},{"last_name":"Bidan","full_name":"Bidan, Cécile M.","first_name":"Cécile M."},{"first_name":"John W.C.","last_name":"Dunlop","full_name":"Dunlop, John W.C."}],"day":"29","scopus_import":"1","title":"Curvature in biological systems: Its quantification, emergence, and implications across the scales","oa_version":"Published Version","volume":35,"article_type":"review","date_created":"2023-03-05T23:01:06Z","oa":1,"language":[{"iso":"eng"}],"issue":"13","citation":{"mla":"Schamberger, Barbara, et al. “Curvature in Biological Systems: Its Quantification, Emergence, and Implications across the Scales.” <i>Advanced Materials</i>, vol. 35, no. 13, 2206110, Wiley, 2023, doi:<a href=\"https://doi.org/10.1002/adma.202206110\">10.1002/adma.202206110</a>.","apa":"Schamberger, B., Ziege, R., Anselme, K., Ben Amar, M., Bykowski, M., Castro, A. P. G., … Dunlop, J. W. C. (2023). Curvature in biological systems: Its quantification, emergence, and implications across the scales. <i>Advanced Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adma.202206110\">https://doi.org/10.1002/adma.202206110</a>","chicago":"Schamberger, Barbara, Ricardo Ziege, Karine Anselme, Martine Ben Amar, Michał Bykowski, André P.G. Castro, Amaia Cipitria, et al. “Curvature in Biological Systems: Its Quantification, Emergence, and Implications across the Scales.” <i>Advanced Materials</i>. Wiley, 2023. <a href=\"https://doi.org/10.1002/adma.202206110\">https://doi.org/10.1002/adma.202206110</a>.","ista":"Schamberger B, Ziege R, Anselme K, Ben Amar M, Bykowski M, Castro APG, Cipitria A, Coles RA, Dimova R, Eder M, Ehrig S, Escudero LM, Evans ME, Fernandes PR, Fratzl P, Geris L, Gierlinger N, Hannezo EB, Iglič A, Kirkensgaard JJK, Kollmannsberger P, Kowalewska Ł, Kurniawan NA, Papantoniou I, Pieuchot L, Pires THV, Renner LD, Sageman-Furnas AO, Schröder-Turk GE, Sengupta A, Sharma VR, Tagua A, Tomba C, Trepat X, Waters SL, Yeo EF, Roschger A, Bidan CM, Dunlop JWC. 2023. Curvature in biological systems: Its quantification, emergence, and implications across the scales. Advanced Materials. 35(13), 2206110.","short":"B. Schamberger, R. Ziege, K. Anselme, M. Ben Amar, M. Bykowski, A.P.G. Castro, A. Cipitria, R.A. Coles, R. Dimova, M. Eder, S. Ehrig, L.M. Escudero, M.E. Evans, P.R. Fernandes, P. Fratzl, L. Geris, N. Gierlinger, E.B. Hannezo, A. Iglič, J.J.K. Kirkensgaard, P. Kollmannsberger, Ł. Kowalewska, N.A. Kurniawan, I. Papantoniou, L. Pieuchot, T.H.V. Pires, L.D. Renner, A.O. Sageman-Furnas, G.E. Schröder-Turk, A. Sengupta, V.R. Sharma, A. Tagua, C. Tomba, X. Trepat, S.L. Waters, E.F. Yeo, A. Roschger, C.M. Bidan, J.W.C. Dunlop, Advanced Materials 35 (2023).","ieee":"B. Schamberger <i>et al.</i>, “Curvature in biological systems: Its quantification, emergence, and implications across the scales,” <i>Advanced Materials</i>, vol. 35, no. 13. Wiley, 2023.","ama":"Schamberger B, Ziege R, Anselme K, et al. Curvature in biological systems: Its quantification, emergence, and implications across the scales. <i>Advanced Materials</i>. 2023;35(13). doi:<a href=\"https://doi.org/10.1002/adma.202206110\">10.1002/adma.202206110</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"03","department":[{"_id":"EdHa"}],"article_number":"2206110","file":[{"relation":"main_file","checksum":"5c04d68130e97a0ecd1ca27fbc15a246","file_name":"2023_AdvancedMaterials_Schamberger.pdf","success":1,"content_type":"application/pdf","access_level":"open_access","file_id":"14373","date_created":"2023-09-26T10:51:56Z","file_size":2898063,"date_updated":"2023-09-26T10:51:56Z","creator":"dernst"}],"ddc":["570"],"quality_controlled":"1","doi":"10.1002/adma.202206110","article_processing_charge":"No","publisher":"Wiley","date_updated":"2023-09-26T10:56:46Z","_id":"12710","type":"journal_article","publication":"Advanced Materials","status":"public","pmid":1,"date_published":"2023-03-29T00:00:00Z","acknowledgement":"B.S. and A.R. contributed equally to this work. A.P.G.C. and P.R.F. acknowledge the funding from Fundação para a Ciência e Tecnologia (Portugal), through IDMEC, under LAETA project UIDB/50022/2020. T.H.V.P. acknowledges the funding from Fundação para a Ciência e Tecnologia (Portugal), through Ph.D. Grant 2020.04417.BD. A.S. acknowledges that this work was partially supported by the ATTRACT Investigator Grant (no. A17/MS/11572821/MBRACE, to A.S.) from the Luxembourg National Research Fund. The author thanks Gerardo Ceada for his help in the graphical representations. N.A.K. acknowledges support from the European Research Council (grant 851960) and the Gravitation Program “Materials Driven Regeneration,” funded by the Netherlands Organization for Scientific Research (024.003.013). M.B.A. acknowledges support from the French National Research Agency (grant ANR-201-8-CE1-3-0008 for the project “Epimorph”). G.E.S.T. acknowledges funding by the Australian Research Council through project DP200102593. A.C. acknowledges the funding from the Deutsche Forschungsgemeinschaft (DFG) Emmy Noether Grant CI 203/-2 1, the Spanish Ministry of Science and Innovation (PID2021-123013O-BI00) and the IKERBASQUE Basque Foundation for Science.","isi":1,"year":"2023","external_id":{"isi":["000941068900001"],"pmid":["36461812"]}},{"year":"2023","date_published":"2023-03-10T00:00:00Z","ec_funded":1,"status":"public","project":[{"call_identifier":"H2020","grant_number":"756502","name":"Circuits of Visual Attention","_id":"2634E9D2-B435-11E9-9278-68D0E5697425"}],"degree_awarded":"PhD","type":"dissertation","_id":"12716","date_updated":"2023-04-05T10:59:04Z","publisher":"Institute of Science and Technology Austria","article_processing_charge":"No","alternative_title":["ISTA Thesis"],"doi":"10.15479/at:ista:12716","ddc":["599","573"],"page":"178","file":[{"date_created":"2023-03-08T15:08:46Z","file_size":23029260,"creator":"lburnett","date_updated":"2023-03-08T15:08:46Z","file_id":"12717","file_name":"Burnett_Thesis_2023.docx","access_level":"closed","content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","relation":"source_file","checksum":"6c6d9cc2c4cdacb74e6b1047a34d7332"},{"relation":"main_file","checksum":"cebc77705288bf4382db9b3541483cd0","success":1,"file_name":"Burnett_Thesis_2023_pdfA.pdf","access_level":"open_access","content_type":"application/pdf","file_id":"12718","file_size":11959869,"date_created":"2023-03-08T15:08:46Z","creator":"lburnett","date_updated":"2023-03-08T15:08:46Z"}],"department":[{"_id":"GradSch"},{"_id":"MaJö"}],"month":"03","supervisor":[{"id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","full_name":"Jösch, Maximilian A","last_name":"Jösch","orcid":"0000-0002-3937-1330","first_name":"Maximilian A"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","citation":{"ama":"Burnett L. To flee, or not to flee? Using innate defensive behaviours to investigate rapid perceptual decision-making through subcortical circuits in mouse models of autism. 2023. doi:<a href=\"https://doi.org/10.15479/at:ista:12716\">10.15479/at:ista:12716</a>","ieee":"L. Burnett, “To flee, or not to flee? Using innate defensive behaviours to investigate rapid perceptual decision-making through subcortical circuits in mouse models of autism,” Institute of Science and Technology Austria, 2023.","short":"L. Burnett, To Flee, or Not to Flee? Using Innate Defensive Behaviours to Investigate Rapid Perceptual Decision-Making through Subcortical Circuits in Mouse Models of Autism, Institute of Science and Technology Austria, 2023.","ista":"Burnett L. 2023. To flee, or not to flee? Using innate defensive behaviours to investigate rapid perceptual decision-making through subcortical circuits in mouse models of autism. Institute of Science and Technology Austria.","chicago":"Burnett, Laura. “To Flee, or Not to Flee? Using Innate Defensive Behaviours to Investigate Rapid Perceptual Decision-Making through Subcortical Circuits in Mouse Models of Autism.” Institute of Science and Technology Austria, 2023. <a href=\"https://doi.org/10.15479/at:ista:12716\">https://doi.org/10.15479/at:ista:12716</a>.","apa":"Burnett, L. (2023). <i>To flee, or not to flee? Using innate defensive behaviours to investigate rapid perceptual decision-making through subcortical circuits in mouse models of autism</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:12716\">https://doi.org/10.15479/at:ista:12716</a>","mla":"Burnett, Laura. <i>To Flee, or Not to Flee? Using Innate Defensive Behaviours to Investigate Rapid Perceptual Decision-Making through Subcortical Circuits in Mouse Models of Autism</i>. Institute of Science and Technology Austria, 2023, doi:<a href=\"https://doi.org/10.15479/at:ista:12716\">10.15479/at:ista:12716</a>."},"language":[{"iso":"eng"}],"oa":1,"date_created":"2023-03-08T15:19:45Z","title":"To flee, or not to flee? Using innate defensive behaviours to investigate rapid perceptual decision-making through subcortical circuits in mouse models of autism","oa_version":"Published Version","day":"10","author":[{"orcid":"0000-0002-8937-410X","first_name":"Laura","last_name":"Burnett","full_name":"Burnett, Laura","id":"3B717F68-F248-11E8-B48F-1D18A9856A87"}],"file_date_updated":"2023-03-08T15:08:46Z","publication_identifier":{"issn":["2663-337X"]},"publication_status":"published","acknowledged_ssus":[{"_id":"PreCl"},{"_id":"Bio"},{"_id":"LifeSc"},{"_id":"M-Shop"},{"_id":"CampIT"}],"abstract":[{"text":"The process of detecting and evaluating sensory information to guide behaviour is termed perceptual decision-making (PDM), and is critical for the ability of an organism to interact with its external world. Individuals with autism, a neurodevelopmental condition primarily characterised by social and communication difficulties, frequently exhibit altered sensory processing and PDM difficulties are widely reported. Recent technological advancements have pushed forward our understanding of the genetic changes accompanying this condition, however our understanding of how these mutations affect the function of specific neuronal circuits and bring about the corresponding behavioural changes remains limited. Here, we use an innate PDM task, the looming avoidance response (LAR) paradigm, to identify a convergent behavioural abnormality across three molecularly distinct genetic mouse models of autism (Cul3, Setd5 and Ptchd1). Although mutant mice can rapidly detect threatening visual stimuli, their responses are consistently delayed, requiring longer to initiate an appropriate response than their wild-type siblings. Mutant animals show abnormal adaptation in both their stimulus- evoked escape responses and exploratory dynamics following repeated stimulus presentations. Similarly delayed behavioural responses are observed in wild-type animals when faced with more ambiguous threats, suggesting the mutant phenotype could arise from a dysfunction in the flexible control of this PDM process.\r\nOur knowledge of the core neuronal circuitry mediating the LAR facilitated a detailed dissection of the neuronal mechanisms underlying the behavioural impairment. In vivo extracellular recording revealed that visual responses were unaffected within a key brain region for the rapid processing of visual threats, the superior colliculus (SC), indicating that the behavioural delay was unlikely to originate from sensory impairments. Delayed behavioural responses were recapitulated in the Setd5 model following optogenetic stimulation of the excitatory output neurons of the SC, which are known to mediate escape initiation through the activation of cells in the underlying dorsal periaqueductal grey (dPAG). In vitro patch-clamp recordings of dPAG cells uncovered a stark hypoexcitability phenotype in two out of the three genetic models investigated (Setd5 and Ptchd1), that in Setd5, is mediated by the misregulation of voltage-gated potassium channels. Overall, our results show that the ability to use visual information to drive efficient escape responses is impaired in three diverse genetic mouse models of autism and that, in one of the models studied, this behavioural delay likely originates from differences in the intrinsic excitability of a key subcortical node, the dPAG. Furthermore, this work showcases the use of an innate behavioural paradigm to mechanistically dissect PDM processes in autism.","lang":"eng"}],"has_accepted_license":"1"},{"year":"2023","isi":1,"external_id":{"isi":["000940286600001"]},"publication":"Genome Medicine","status":"public","acknowledgement":"We are grateful to all the families who took part, the general practitioners, and the Scottish School of Primary Care for their help in recruiting them and the whole GS team that includes interviewers, computer and laboratory technicians, clerical workers, research scientists, volunteers, managers, receptionists, healthcare assistants, and nurses.","date_published":"2023-02-28T00:00:00Z","article_processing_charge":"No","doi":"10.1186/s13073-023-01161-y","publisher":"Springer Nature","_id":"12719","date_updated":"2023-08-01T13:38:12Z","type":"journal_article","ddc":["570"],"quality_controlled":"1","month":"02","department":[{"_id":"MaRo"}],"article_number":"12","file":[{"file_id":"12722","file_size":4275987,"date_created":"2023-03-14T10:29:47Z","date_updated":"2023-03-14T10:29:47Z","creator":"cchlebak","relation":"main_file","checksum":"833b837910c4db42fb5f0f34125f77a7","file_name":"2023_GenomeMed_Bernabeu.pdf","success":1,"content_type":"application/pdf","access_level":"open_access"}],"oa":1,"language":[{"iso":"eng"}],"citation":{"mla":"Bernabeu, Elena, et al. “Refining Epigenetic Prediction of Chronological and Biological Age.” <i>Genome Medicine</i>, vol. 15, 12, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1186/s13073-023-01161-y\">10.1186/s13073-023-01161-y</a>.","apa":"Bernabeu, E., Mccartney, D. L., Gadd, D. A., Hillary, R. F., Lu, A. T., Murphy, L., … Marioni, R. E. (2023). Refining epigenetic prediction of chronological and biological age. <i>Genome Medicine</i>. Springer Nature. <a href=\"https://doi.org/10.1186/s13073-023-01161-y\">https://doi.org/10.1186/s13073-023-01161-y</a>","chicago":"Bernabeu, Elena, Daniel L. Mccartney, Danni A. Gadd, Robert F. Hillary, Ake T. Lu, Lee Murphy, Nicola Wrobel, et al. “Refining Epigenetic Prediction of Chronological and Biological Age.” <i>Genome Medicine</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1186/s13073-023-01161-y\">https://doi.org/10.1186/s13073-023-01161-y</a>.","ista":"Bernabeu E, Mccartney DL, Gadd DA, Hillary RF, Lu AT, Murphy L, Wrobel N, Campbell A, Harris SE, Liewald D, Hayward C, Sudlow C, Cox SR, Evans KL, Horvath S, Mcintosh AM, Robinson MR, Vallejos CA, Marioni RE. 2023. Refining epigenetic prediction of chronological and biological age. Genome Medicine. 15, 12.","short":"E. Bernabeu, D.L. Mccartney, D.A. Gadd, R.F. Hillary, A.T. Lu, L. Murphy, N. Wrobel, A. Campbell, S.E. Harris, D. Liewald, C. Hayward, C. Sudlow, S.R. Cox, K.L. Evans, S. Horvath, A.M. Mcintosh, M.R. Robinson, C.A. Vallejos, R.E. Marioni, Genome Medicine 15 (2023).","ieee":"E. Bernabeu <i>et al.</i>, “Refining epigenetic prediction of chronological and biological age,” <i>Genome Medicine</i>, vol. 15. Springer Nature, 2023.","ama":"Bernabeu E, Mccartney DL, Gadd DA, et al. Refining epigenetic prediction of chronological and biological age. <i>Genome Medicine</i>. 2023;15. doi:<a href=\"https://doi.org/10.1186/s13073-023-01161-y\">10.1186/s13073-023-01161-y</a>"},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","day":"28","scopus_import":"1","author":[{"first_name":"Elena","full_name":"Bernabeu, Elena","last_name":"Bernabeu"},{"first_name":"Daniel L.","last_name":"Mccartney","full_name":"Mccartney, Daniel L."},{"first_name":"Danni A.","full_name":"Gadd, Danni A.","last_name":"Gadd"},{"first_name":"Robert F.","last_name":"Hillary","full_name":"Hillary, Robert F."},{"first_name":"Ake T.","last_name":"Lu","full_name":"Lu, Ake T."},{"last_name":"Murphy","full_name":"Murphy, Lee","first_name":"Lee"},{"full_name":"Wrobel, Nicola","last_name":"Wrobel","first_name":"Nicola"},{"first_name":"Archie","full_name":"Campbell, Archie","last_name":"Campbell"},{"full_name":"Harris, Sarah E.","last_name":"Harris","first_name":"Sarah E."},{"first_name":"David","last_name":"Liewald","full_name":"Liewald, David"},{"last_name":"Hayward","full_name":"Hayward, Caroline","first_name":"Caroline"},{"first_name":"Cathie","last_name":"Sudlow","full_name":"Sudlow, Cathie"},{"full_name":"Cox, Simon R.","last_name":"Cox","first_name":"Simon R."},{"first_name":"Kathryn L.","last_name":"Evans","full_name":"Evans, Kathryn L."},{"first_name":"Steve","last_name":"Horvath","full_name":"Horvath, Steve"},{"first_name":"Andrew M.","full_name":"Mcintosh, Andrew M.","last_name":"Mcintosh"},{"full_name":"Robinson, Matthew Richard","id":"E5D42276-F5DA-11E9-8E24-6303E6697425","last_name":"Robinson","first_name":"Matthew Richard","orcid":"0000-0001-8982-8813"},{"last_name":"Vallejos","full_name":"Vallejos, Catalina A.","first_name":"Catalina A."},{"first_name":"Riccardo E.","last_name":"Marioni","full_name":"Marioni, Riccardo E."}],"title":"Refining epigenetic prediction of chronological and biological age","oa_version":"Published Version","volume":15,"date_created":"2023-03-12T23:01:02Z","article_type":"original","has_accepted_license":"1","abstract":[{"text":"Background\r\nEpigenetic clocks can track both chronological age (cAge) and biological age (bAge). The latter is typically defined by physiological biomarkers and risk of adverse health outcomes, including all-cause mortality. As cohort sample sizes increase, estimates of cAge and bAge become more precise. Here, we aim to develop accurate epigenetic predictors of cAge and bAge, whilst improving our understanding of their epigenomic architecture.\r\n\r\nMethods\r\nFirst, we perform large-scale (N = 18,413) epigenome-wide association studies (EWAS) of chronological age and all-cause mortality. Next, to create a cAge predictor, we use methylation data from 24,674 participants from the Generation Scotland study, the Lothian Birth Cohorts (LBC) of 1921 and 1936, and 8 other cohorts with publicly available data. In addition, we train a predictor of time to all-cause mortality as a proxy for bAge using the Generation Scotland cohort (1214 observed deaths). For this purpose, we use epigenetic surrogates (EpiScores) for 109 plasma proteins and the 8 component parts of GrimAge, one of the current best epigenetic predictors of survival. We test this bAge predictor in four external cohorts (LBC1921, LBC1936, the Framingham Heart Study and the Women’s Health Initiative study).\r\n\r\nResults\r\nThrough the inclusion of linear and non-linear age-CpG associations from the EWAS, feature pre-selection in advance of elastic net regression, and a leave-one-cohort-out (LOCO) cross-validation framework, we obtain cAge prediction with a median absolute error equal to 2.3 years. Our bAge predictor was found to slightly outperform GrimAge in terms of the strength of its association to survival (HRGrimAge = 1.47 [1.40, 1.54] with p = 1.08 × 10−52, and HRbAge = 1.52 [1.44, 1.59] with p = 2.20 × 10−60). Finally, we introduce MethylBrowsR, an online tool to visualise epigenome-wide CpG-age associations.\r\n\r\nConclusions\r\nThe integration of multiple large datasets, EpiScores, non-linear DNAm effects, and new approaches to feature selection has facilitated improvements to the blood-based epigenetic prediction of biological and chronological age.","lang":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"intvolume":"        15","file_date_updated":"2023-03-14T10:29:47Z","publication_identifier":{"eissn":["1756-994X"]},"publication_status":"published"},{"date_published":"2023-03-01T00:00:00Z","pmid":1,"publication":"DNA Manipulation and Analysis","status":"public","external_id":{"pmid":["36853454"]},"year":"2023","quality_controlled":"1","page":"33-44","type":"book_chapter","series_title":"MIMB","date_updated":"2023-03-16T08:34:24Z","_id":"12720","editor":[{"last_name":"Scarlett","full_name":"Scarlett, Garry","first_name":"Garry"}],"publisher":"Springer Nature","doi":"10.1007/978-1-0716-3004-4_3","article_processing_charge":"No","alternative_title":["Methods in Molecular Biology"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ieee":"S. Arroyo-Urea, J. Watson, and J. García-Nafría, “Molecular Cloning Using In Vivo DNA Assembly,” in <i>DNA Manipulation and Analysis</i>, vol. 2633, G. Scarlett, Ed. New York, NY, United States: Springer Nature, 2023, pp. 33–44.","short":"S. Arroyo-Urea, J. Watson, J. García-Nafría, in:, G. Scarlett (Ed.), DNA Manipulation and Analysis, Springer Nature, New York, NY, United States, 2023, pp. 33–44.","ama":"Arroyo-Urea S, Watson J, García-Nafría J. Molecular Cloning Using In Vivo DNA Assembly. In: Scarlett G, ed. <i>DNA Manipulation and Analysis</i>. Vol 2633. MIMB. New York, NY, United States: Springer Nature; 2023:33-44. doi:<a href=\"https://doi.org/10.1007/978-1-0716-3004-4_3\">10.1007/978-1-0716-3004-4_3</a>","apa":"Arroyo-Urea, S., Watson, J., &#38; García-Nafría, J. (2023). Molecular Cloning Using In Vivo DNA Assembly. In G. Scarlett (Ed.), <i>DNA Manipulation and Analysis</i> (Vol. 2633, pp. 33–44). New York, NY, United States: Springer Nature. <a href=\"https://doi.org/10.1007/978-1-0716-3004-4_3\">https://doi.org/10.1007/978-1-0716-3004-4_3</a>","mla":"Arroyo-Urea, Sandra, et al. “Molecular Cloning Using In Vivo DNA Assembly.” <i>DNA Manipulation and Analysis</i>, edited by Garry Scarlett, vol. 2633, Springer Nature, 2023, pp. 33–44, doi:<a href=\"https://doi.org/10.1007/978-1-0716-3004-4_3\">10.1007/978-1-0716-3004-4_3</a>.","chicago":"Arroyo-Urea, Sandra, Jake Watson, and Javier García-Nafría. “Molecular Cloning Using In Vivo DNA Assembly.” In <i>DNA Manipulation and Analysis</i>, edited by Garry Scarlett, 2633:33–44. MIMB. New York, NY, United States: Springer Nature, 2023. <a href=\"https://doi.org/10.1007/978-1-0716-3004-4_3\">https://doi.org/10.1007/978-1-0716-3004-4_3</a>.","ista":"Arroyo-Urea S, Watson J, García-Nafría J. 2023.Molecular Cloning Using In Vivo DNA Assembly. In: DNA Manipulation and Analysis. Methods in Molecular Biology, vol. 2633, 33–44."},"place":"New York, NY, United States","language":[{"iso":"eng"}],"department":[{"_id":"PeJo"}],"month":"03","publication_identifier":{"eissn":["1940-6029"],"eisbn":["978-1-0716-3004-4"],"isbn":["978-1-0716-3003-7"],"issn":["1064-3745"]},"publication_status":"published","abstract":[{"lang":"eng","text":"Here we describe the in vivo DNA assembly approach, where molecular cloning procedures are performed using an E. coli recA-independent recombination pathway, which assembles linear fragments of DNA with short homologous termini. This pathway is present in all standard laboratory E. coli strains and, by bypassing the need for in vitro DNA assembly, allows simplified molecular cloning to be performed without the plasmid instability issues associated with specialized recombination-cloning bacterial strains. The methodology requires specific primer design and can perform all standard plasmid modifications (insertions, deletions, mutagenesis, and sub-cloning) in a rapid, simple, and cost-efficient manner, as it does not require commercial kits or specialized bacterial strains. Additionally, this approach can be used to perform complex procedures such as multiple modifications to a plasmid, as up to 6 linear fragments can be assembled in vivo by this recombination pathway. Procedures generally require less than 3 h, involving PCR amplification, DpnI digestion of template DNA, and transformation, upon which circular plasmids are assembled. In this chapter we describe the requirements, procedure, and potential pitfalls when using this technique, as well as protocol variations to overcome the most common issues."}],"intvolume":"      2633","date_created":"2023-03-12T23:01:02Z","volume":2633,"title":"Molecular Cloning Using In Vivo DNA Assembly","oa_version":"None","author":[{"full_name":"Arroyo-Urea, Sandra","last_name":"Arroyo-Urea","first_name":"Sandra"},{"first_name":"Jake","orcid":"0000-0002-8698-3823","last_name":"Watson","id":"63836096-4690-11EA-BD4E-32803DDC885E","full_name":"Watson, Jake"},{"full_name":"García-Nafría, Javier","last_name":"García-Nafría","first_name":"Javier"}],"scopus_import":"1","day":"01"},{"language":[{"iso":"eng"}],"oa":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","issue":"10","citation":{"ista":"Volosniev A, Shiva Kumar A, Lorenc D, Ashourishokri Y, Zhumekenov AA, Bakr OM, Lemeshko M, Alpichshev Z. 2023. Spin-electric coupling in lead halide perovskites. Physical Review Letters. 130(10), 106901.","chicago":"Volosniev, Artem, Abhishek Shiva Kumar, Dusan Lorenc, Younes Ashourishokri, Ayan A. Zhumekenov, Osman M. Bakr, Mikhail Lemeshko, and Zhanybek Alpichshev. “Spin-Electric Coupling in Lead Halide Perovskites.” <i>Physical Review Letters</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/physrevlett.130.106901\">https://doi.org/10.1103/physrevlett.130.106901</a>.","apa":"Volosniev, A., Shiva Kumar, A., Lorenc, D., Ashourishokri, Y., Zhumekenov, A. A., Bakr, O. M., … Alpichshev, Z. (2023). Spin-electric coupling in lead halide perovskites. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevlett.130.106901\">https://doi.org/10.1103/physrevlett.130.106901</a>","mla":"Volosniev, Artem, et al. “Spin-Electric Coupling in Lead Halide Perovskites.” <i>Physical Review Letters</i>, vol. 130, no. 10, 106901, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/physrevlett.130.106901\">10.1103/physrevlett.130.106901</a>.","ama":"Volosniev A, Shiva Kumar A, Lorenc D, et al. Spin-electric coupling in lead halide perovskites. <i>Physical Review Letters</i>. 2023;130(10). doi:<a href=\"https://doi.org/10.1103/physrevlett.130.106901\">10.1103/physrevlett.130.106901</a>","ieee":"A. Volosniev <i>et al.</i>, “Spin-electric coupling in lead halide perovskites,” <i>Physical Review Letters</i>, vol. 130, no. 10. American Physical Society, 2023.","short":"A. Volosniev, A. Shiva Kumar, D. Lorenc, Y. Ashourishokri, A.A. Zhumekenov, O.M. Bakr, M. Lemeshko, Z. Alpichshev, Physical Review Letters 130 (2023)."},"month":"03","arxiv":1,"article_number":"106901","department":[{"_id":"GradSch"},{"_id":"ZhAl"},{"_id":"MiLe"}],"intvolume":"       130","abstract":[{"text":"Lead halide perovskites enjoy a number of remarkable optoelectronic properties. To explain their origin, it is necessary to study how electromagnetic fields interact with these systems. We address this problem here by studying two classical quantities: Faraday rotation and the complex refractive index in a paradigmatic perovskite CH3NH3PbBr3 in a broad wavelength range. We find that the minimal coupling of electromagnetic fields to the k⋅p Hamiltonian is insufficient to describe the observed data even on the qualitative level. To amend this, we demonstrate that there exists a relevant atomic-level coupling between electromagnetic fields and the spin degree of freedom. This spin-electric coupling allows for quantitative description of a number of previous as well as present experimental data. In particular, we use it here to show that the Faraday effect in lead halide perovskites is dominated by the Zeeman splitting of the energy levels and has a substantial beyond-Becquerel contribution. Finally, we present general symmetry-based phenomenological arguments that in the low-energy limit our effective model includes all basis coupling terms to the electromagnetic field in the linear order.","lang":"eng"}],"publication_identifier":{"eissn":["1079-7114"],"issn":["0031-9007"]},"publication_status":"published","oa_version":"Preprint","title":"Spin-electric coupling in lead halide perovskites","author":[{"last_name":"Volosniev","id":"37D278BC-F248-11E8-B48F-1D18A9856A87","full_name":"Volosniev, Artem","orcid":"0000-0003-0393-5525","first_name":"Artem"},{"full_name":"Shiva Kumar, Abhishek","id":"5e9a6931-eb97-11eb-a6c2-e96f7058d77a","last_name":"Shiva Kumar","first_name":"Abhishek"},{"first_name":"Dusan","full_name":"Lorenc, Dusan","id":"40D8A3E6-F248-11E8-B48F-1D18A9856A87","last_name":"Lorenc"},{"first_name":"Younes","last_name":"Ashourishokri","full_name":"Ashourishokri, Younes","id":"e32c111f-f6e0-11ea-865d-eb955baea334"},{"full_name":"Zhumekenov, Ayan A.","last_name":"Zhumekenov","first_name":"Ayan A."},{"first_name":"Osman M.","full_name":"Bakr, Osman M.","last_name":"Bakr"},{"full_name":"Lemeshko, Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko","orcid":"0000-0002-6990-7802","first_name":"Mikhail"},{"orcid":"0000-0002-7183-5203","first_name":"Zhanybek","full_name":"Alpichshev, Zhanybek","id":"45E67A2A-F248-11E8-B48F-1D18A9856A87","last_name":"Alpichshev"}],"scopus_import":"1","day":"10","article_type":"original","date_created":"2023-03-14T13:11:59Z","volume":130,"publication":"Physical Review Letters","status":"public","date_published":"2023-03-10T00:00:00Z","external_id":{"isi":["000982435900002"],"arxiv":["2203.09443"]},"isi":1,"year":"2023","keyword":["General Physics and Astronomy"],"quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2203.09443"}],"publisher":"American Physical Society","doi":"10.1103/physrevlett.130.106901","article_processing_charge":"No","type":"journal_article","date_updated":"2023-08-01T13:39:04Z","_id":"12723"},{"arxiv":1,"month":"03","department":[{"_id":"GradSch"},{"_id":"ZhAl"},{"_id":"MiLe"}],"article_number":"125201","oa":1,"language":[{"iso":"eng"}],"issue":"12","citation":{"mla":"Volosniev, Artem, et al. “Effective Model for Studying Optical Properties of Lead Halide Perovskites.” <i>Physical Review B</i>, vol. 107, no. 12, 125201, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/physrevb.107.125201\">10.1103/physrevb.107.125201</a>.","apa":"Volosniev, A., Shiva Kumar, A., Lorenc, D., Ashourishokri, Y., Zhumekenov, A., Bakr, O. M., … Alpichshev, Z. (2023). Effective model for studying optical properties of lead halide perovskites. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevb.107.125201\">https://doi.org/10.1103/physrevb.107.125201</a>","ista":"Volosniev A, Shiva Kumar A, Lorenc D, Ashourishokri Y, Zhumekenov A, Bakr OM, Lemeshko M, Alpichshev Z. 2023. Effective model for studying optical properties of lead halide perovskites. Physical Review B. 107(12), 125201.","chicago":"Volosniev, Artem, Abhishek Shiva Kumar, Dusan Lorenc, Younes Ashourishokri, Ayan Zhumekenov, Osman M. Bakr, Mikhail Lemeshko, and Zhanybek Alpichshev. “Effective Model for Studying Optical Properties of Lead Halide Perovskites.” <i>Physical Review B</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/physrevb.107.125201\">https://doi.org/10.1103/physrevb.107.125201</a>.","short":"A. Volosniev, A. Shiva Kumar, D. Lorenc, Y. Ashourishokri, A. Zhumekenov, O.M. Bakr, M. Lemeshko, Z. Alpichshev, Physical Review B 107 (2023).","ieee":"A. Volosniev <i>et al.</i>, “Effective model for studying optical properties of lead halide perovskites,” <i>Physical Review B</i>, vol. 107, no. 12. American Physical Society, 2023.","ama":"Volosniev A, Shiva Kumar A, Lorenc D, et al. Effective model for studying optical properties of lead halide perovskites. <i>Physical Review B</i>. 2023;107(12). doi:<a href=\"https://doi.org/10.1103/physrevb.107.125201\">10.1103/physrevb.107.125201</a>"},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","author":[{"id":"37D278BC-F248-11E8-B48F-1D18A9856A87","full_name":"Volosniev, Artem","last_name":"Volosniev","first_name":"Artem","orcid":"0000-0003-0393-5525"},{"first_name":"Abhishek","id":"5e9a6931-eb97-11eb-a6c2-e96f7058d77a","full_name":"Shiva Kumar, Abhishek","last_name":"Shiva Kumar"},{"first_name":"Dusan","last_name":"Lorenc","full_name":"Lorenc, Dusan","id":"40D8A3E6-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Younes","id":"e32c111f-f6e0-11ea-865d-eb955baea334","full_name":"Ashourishokri, Younes","last_name":"Ashourishokri"},{"first_name":"Ayan","full_name":"Zhumekenov, Ayan","last_name":"Zhumekenov"},{"first_name":"Osman M.","last_name":"Bakr","full_name":"Bakr, Osman M."},{"orcid":"0000-0002-6990-7802","first_name":"Mikhail","last_name":"Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Lemeshko, Mikhail"},{"first_name":"Zhanybek","orcid":"0000-0002-7183-5203","id":"45E67A2A-F248-11E8-B48F-1D18A9856A87","full_name":"Alpichshev, Zhanybek","last_name":"Alpichshev"}],"day":"15","scopus_import":"1","oa_version":"Preprint","title":"Effective model for studying optical properties of lead halide perovskites","volume":107,"article_type":"original","date_created":"2023-03-14T13:13:05Z","intvolume":"       107","abstract":[{"lang":"eng","text":"We use general symmetry-based arguments to construct an effective model suitable for studying optical properties of lead halide perovskites. To build the model, we identify an atomic-level interaction between electromagnetic fields and the spin degree of freedom that should be added to a minimally coupled k⋅p Hamiltonian. As a first application, we study two basic optical characteristics of the material: the Verdet constant and the refractive index. Beyond these linear characteristics of the material, the model is suitable for calculating nonlinear effects such as the third-order optical susceptibility. Analysis of this quantity shows that the geometrical properties of the spin-electric term imply isotropic optical response of the system, and that optical anisotropy of lead halide perovskites is a manifestation of hopping of charge carriers. To illustrate this, we discuss third-harmonic generation."}],"publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"publication_status":"published","isi":1,"year":"2023","external_id":{"arxiv":["2204.04022"],"isi":["000972602200006"]},"publication":"Physical Review B","status":"public","date_published":"2023-03-15T00:00:00Z","doi":"10.1103/physrevb.107.125201","article_processing_charge":"No","publisher":"American Physical Society","date_updated":"2023-08-01T13:39:47Z","_id":"12724","type":"journal_article","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2204.04022"}],"quality_controlled":"1"},{"doi":"10.15479/at:ista:12726","alternative_title":["ISTA Thesis"],"article_processing_charge":"No","publisher":"Institute of Science and Technology Austria","date_updated":"2023-11-30T10:55:13Z","_id":"12726","type":"dissertation","page":"260","ddc":["530"],"year":"2023","related_material":{"record":[{"relation":"part_of_dissertation","status":"public","id":"10703"},{"status":"public","relation":"part_of_dissertation","id":"10791"},{"id":"7932","status":"public","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","status":"public","id":"461"},{"relation":"new_edition","status":"public","id":"14530"}]},"degree_awarded":"PhD","status":"public","date_published":"2023-03-23T00:00:00Z","author":[{"first_name":"Michael","orcid":"0000-0003-4844-6311","full_name":"Riedl, Michael","id":"3BE60946-F248-11E8-B48F-1D18A9856A87","last_name":"Riedl"}],"day":"23","oa_version":"None","title":"Synchronization in collectively moving active matter","date_created":"2023-03-15T13:22:13Z","has_accepted_license":"1","abstract":[{"text":"Most motions of many-body systems at any scale in nature with sufficient degrees\r\nof freedom tend to be chaotic; reaching from the orbital motion of planets, the air\r\ncurrents in our atmosphere, down to the water flowing through our pipelines or\r\nthe movement of a population of bacteria. To the observer it is therefore intriguing\r\nwhen a moving collective exhibits order. Collective motion of flocks of birds, schools\r\nof fish or swarms of self-propelled particles or robots have been studied extensively\r\nover the past decades but the mechanisms involved in the transition from chaos to\r\norder remain unclear. Here, the interactions, that in most systems give rise to chaos,\r\nsustain order. In this thesis we investigate mechanisms that preserve, destabilize\r\nor lead to the ordered state. We show that endothelial cells migrating in circular\r\nconfinements transition to a collective rotating state and concomitantly synchronize\r\nthe frequencies of nucleating actin waves within individual cells. Consequently,\r\nthe frequency dependent cell migration speed uniformizes across the population.\r\nComplementary to the WAVE dependent nucleation of traveling actin waves, we\r\nshow that in leukocytes the actin polymerization depending on WASp generates\r\npushing forces locally at stationary patches. Next, in pipe flows, we study methods\r\nto disrupt the self–sustaining cycle of turbulence and therefore relaminarize the\r\nflow. While we find in pulsating flow conditions that turbulence emerges through a\r\nhelical instability during the decelerating phase. Finally, we show quantitatively in\r\nbrain slices of mice that wild-type control neurons can compensate the migratory\r\ndeficits of a genetically modified neuronal sub–population in the developing cortex.","lang":"eng"}],"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"Bio"}],"publication_identifier":{"issn":["2663-337X"]},"publication_status":"published","file_date_updated":"2023-11-24T11:57:46Z","supervisor":[{"first_name":"Björn","orcid":"0000-0003-2057-2754","last_name":"Hof","full_name":"Hof, Björn","id":"3A374330-F248-11E8-B48F-1D18A9856A87"}],"month":"03","department":[{"_id":"GradSch"},{"_id":"BjHo"}],"file":[{"file_id":"12745","date_created":"2023-03-23T12:49:23Z","file_size":63734746,"creator":"cchlebak","date_updated":"2023-11-24T11:57:46Z","relation":"main_file","description":"the main file is missing the bibliography. See new thesis record 14530 for updated files.","checksum":"eba0e19fe57a8c15e7aeab55a845efb7","file_name":"Thesis_Riedl_2023.pdf","content_type":"application/pdf","access_level":"closed"},{"file_name":"Thesis_Riedl_2023_source.rar","access_level":"closed","content_type":"application/octet-stream","relation":"source_file","checksum":"0eb7b650cc8ae843bcec7c8a6109ae03","file_size":339473651,"date_created":"2023-03-23T12:54:34Z","creator":"cchlebak","date_updated":"2023-09-24T22:30:03Z","file_id":"12746","embargo_to":"open_access"}],"language":[{"iso":"eng"}],"citation":{"ieee":"M. Riedl, “Synchronization in collectively moving active matter,” Institute of Science and Technology Austria, 2023.","short":"M. Riedl, Synchronization in Collectively Moving Active Matter, Institute of Science and Technology Austria, 2023.","ama":"Riedl M. Synchronization in collectively moving active matter. 2023. doi:<a href=\"https://doi.org/10.15479/at:ista:12726\">10.15479/at:ista:12726</a>","apa":"Riedl, M. (2023). <i>Synchronization in collectively moving active matter</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:12726\">https://doi.org/10.15479/at:ista:12726</a>","mla":"Riedl, Michael. <i>Synchronization in Collectively Moving Active Matter</i>. Institute of Science and Technology Austria, 2023, doi:<a href=\"https://doi.org/10.15479/at:ista:12726\">10.15479/at:ista:12726</a>.","chicago":"Riedl, Michael. “Synchronization in Collectively Moving Active Matter.” Institute of Science and Technology Austria, 2023. <a href=\"https://doi.org/10.15479/at:ista:12726\">https://doi.org/10.15479/at:ista:12726</a>.","ista":"Riedl M. 2023. Synchronization in collectively moving active matter. Institute of Science and Technology Austria."},"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9"},{"type":"dissertation","date_updated":"2023-09-20T10:44:12Z","_id":"12732","publisher":"Institute of Science and Technology Austria","doi":"10.15479/at:ista:12732","article_processing_charge":"No","alternative_title":["ISTA Thesis"],"ddc":["530"],"page":"158","related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"11470"},{"id":"8308","status":"public","relation":"part_of_dissertation"},{"id":"11469","status":"public","relation":"part_of_dissertation"},{"id":"12750","status":"public","relation":"part_of_dissertation"}]},"year":"2023","date_published":"2023-03-21T00:00:00Z","ec_funded":1,"project":[{"_id":"23841C26-32DE-11EA-91FC-C7463DDC885E","grant_number":"850899","name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control","call_identifier":"H2020"}],"status":"public","degree_awarded":"PhD","date_created":"2023-03-17T13:30:48Z","title":"Ergodicity breaking in disordered and kinetically constrained quantum many-body systems","oa_version":"None","author":[{"id":"4115AF5C-F248-11E8-B48F-1D18A9856A87","full_name":"Brighi, Pietro","last_name":"Brighi","first_name":"Pietro","orcid":"0000-0002-7969-2729"}],"day":"21","publication_identifier":{"issn":["2663-337X"]},"publication_status":"published","file_date_updated":"2023-03-23T16:43:14Z","tmp":{"image":"/images/cc_by_nc_sa.png","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","short":"CC BY-NC-SA (4.0)"},"abstract":[{"lang":"eng","text":"Nonergodic systems, whose out-of-equilibrium dynamics fail to thermalize, provide a fascinating research direction both for fundamental reasons and for application in state of the art quantum devices.\r\nGoing beyond the description of statistical mechanics, ergodicity breaking yields a new paradigm in quantum many-body physics, introducing novel phases of matter with no counterpart at equilibrium.\r\nIn this Thesis, we address different open questions in the field, focusing on disorder-induced many-body localization (MBL) and on weak ergodicity breaking in kinetically constrained models.\r\nIn particular, we contribute to the debate about transport in kinetically constrained models, studying the effect of $U(1)$ conservation and inversion-symmetry breaking in a family of quantum East models.\r\nUsing tensor network techniques, we analyze the dynamics of large MBL systems beyond the limit of exact numerical methods.\r\nIn this setting, we approach the debated topic of the coexistence of localized and thermal eigenstates separated by energy thresholds known as many-body mobility edges.\r\nInspired by recent experiments, our work further investigates the localization of a small bath induced by the coupling to a large localized chain, the so-called MBL proximity effect.\r\n\r\nIn the first Chapter, we introduce a family of particle-conserving kinetically constrained models, inspired by the quantum East model.\r\nThe system we study features strong inversion-symmetry breaking, due to the nature of the correlated hopping.\r\nWe show that these models host so-called quantum Hilbert space fragmentation, consisting of disconnected subsectors in an entangled basis, and further provide an analytical description of this phenomenon.\r\nWe further probe its effect on dynamics of simple product states, showing revivals in fidelity and local observalbes.\r\nThe study of dynamics within the largest subsector reveals an anomalous transient superdiffusive behavior crossing over to slow logarithmic dynamics at later times.\r\nThis work suggests that particle conserving constrained models with inversion-symmetry breaking realize new universality classes of dynamics and invite their further theoretical and experimental studies.\r\n\r\nNext, we use kinetic constraints and disorder to design a model with many-body mobility edges in particle density.\r\nThis feature allows to study the dynamics of localized and thermal states in large systems beyond the limitations of previous studies.\r\nThe time-evolution shows typical signatures of localization at small densities, replaced by thermal behavior at larger densities.\r\nOur results provide evidence in favor of the stability of many-body mobility edges, which was recently challenged by a theoretical argument.\r\nTo support our findings, we probe the mechanism proposed as a cause of delocalization in many-body localized systems with mobility edges suggesting its ineffectiveness in the model studied.\r\n\r\nIn the last Chapter of this Thesis, we address the topic of many-body localization proximity effect.\r\nWe study a model inspired by recent experiments, featuring Anderson localized coupled to a small bath of free hard-core bosons.\r\nThe interaction among the two particle species results in non-trivial dynamics, which we probe using tensor network techniques.\r\nOur simulations show convincing evidence of many-body localization proximity effect when the bath is composed by a single free particle and interactions are strong.\r\nWe furthter observe an anomalous entanglement dynamics, which we explain through a phenomenological theory.\r\nFinally, we extract highly excited eigenstates of large systems, providing supplementary evidence in favor of our findings."}],"acknowledged_ssus":[{"_id":"ScienComp"}],"has_accepted_license":"1","file":[{"access_level":"closed","content_type":"application/zip","file_name":"Thesis_sub_PBrighi.zip","checksum":"5d2de651ef9449c1b8dc27148ca74777","relation":"source_file","date_updated":"2023-03-23T16:42:56Z","creator":"pbrighi","date_created":"2023-03-23T16:42:56Z","file_size":42167561,"file_id":"12753"},{"date_updated":"2023-03-23T16:43:14Z","creator":"pbrighi","date_created":"2023-03-23T16:43:14Z","file_size":13977000,"file_id":"12754","access_level":"open_access","content_type":"application/pdf","success":1,"file_name":"Thesis_PBrighi.pdf","checksum":"7caa153d4a5b0873a79358787d2dfe1e","relation":"main_file"}],"department":[{"_id":"GradSch"},{"_id":"MaSe"}],"month":"03","supervisor":[{"full_name":"Serbyn, Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","last_name":"Serbyn","first_name":"Maksym","orcid":"0000-0002-2399-5827"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","citation":{"ama":"Brighi P. Ergodicity breaking in disordered and kinetically constrained quantum many-body systems. 2023. doi:<a href=\"https://doi.org/10.15479/at:ista:12732\">10.15479/at:ista:12732</a>","short":"P. Brighi, Ergodicity Breaking in Disordered and Kinetically Constrained Quantum Many-Body Systems, Institute of Science and Technology Austria, 2023.","ieee":"P. Brighi, “Ergodicity breaking in disordered and kinetically constrained quantum many-body systems,” Institute of Science and Technology Austria, 2023.","ista":"Brighi P. 2023. Ergodicity breaking in disordered and kinetically constrained quantum many-body systems. Institute of Science and Technology Austria.","chicago":"Brighi, Pietro. “Ergodicity Breaking in Disordered and Kinetically Constrained Quantum Many-Body Systems.” Institute of Science and Technology Austria, 2023. <a href=\"https://doi.org/10.15479/at:ista:12732\">https://doi.org/10.15479/at:ista:12732</a>.","mla":"Brighi, Pietro. <i>Ergodicity Breaking in Disordered and Kinetically Constrained Quantum Many-Body Systems</i>. Institute of Science and Technology Austria, 2023, doi:<a href=\"https://doi.org/10.15479/at:ista:12732\">10.15479/at:ista:12732</a>.","apa":"Brighi, P. (2023). <i>Ergodicity breaking in disordered and kinetically constrained quantum many-body systems</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:12732\">https://doi.org/10.15479/at:ista:12732</a>"},"language":[{"iso":"eng"}],"oa":1}]