[{"publication_status":"published","project":[{"name":"Self-Organization of the Bacterial Cell","_id":"2595697A-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"679239"},{"_id":"fc38323b-9c52-11eb-aca3-ff8afb4a011d","name":"Understanding bacterial cell division by in vitro\r\nreconstitution","grant_number":"P34607"},{"grant_number":"26360","name":"Motile active matter models of migrating cells and chiral filaments","_id":"34d75525-11ca-11ed-8bc3-89b6307fee9d"}],"file_date_updated":"2024-01-30T14:28:30Z","type":"journal_article","scopus_import":"1","abstract":[{"lang":"eng","text":"The emergence of large-scale order in self-organized systems relies on local interactions between individual components. During bacterial cell division, FtsZ—a prokaryotic homologue of the eukaryotic protein tubulin—polymerizes into treadmilling filaments that further organize into a cytoskeletal ring. In vitro, FtsZ filaments can form dynamic chiral assemblies. However, how the active and passive properties of individual filaments relate to these large-scale self-organized structures remains poorly understood. Here we connect single-filament properties with the mesoscopic scale by combining minimal active matter simulations and biochemical reconstitution experiments. We show that the density and flexibility of active chiral filaments define their global order. At intermediate densities, curved, flexible filaments organize into chiral rings and polar bands. An effectively nematic organization dominates for high densities and for straight, mutant filaments with increased rigidity. Our predicted phase diagram quantitatively captures these features, demonstrating how the flexibility, density and chirality of the active filaments affect their collective behaviour. Our findings shed light on the fundamental properties of active chiral matter and explain how treadmilling FtsZ filaments organize during bacterial cell division."}],"publication_identifier":{"eissn":["1745-2481"],"issn":["1745-2473"]},"citation":{"chicago":"Dunajova, Zuzana, Batirtze Prats Mateu, Philipp Radler, Keesiang Lim, Dörte Brandis, Philipp Velicky, Johann G Danzl, et al. “Chiral and Nematic Phases of Flexible Active Filaments.” <i>Nature Physics</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41567-023-02218-w\">https://doi.org/10.1038/s41567-023-02218-w</a>.","ama":"Dunajova Z, Prats Mateu B, Radler P, et al. Chiral and nematic phases of flexible active filaments. <i>Nature Physics</i>. 2023;19:1916-1926. doi:<a href=\"https://doi.org/10.1038/s41567-023-02218-w\">10.1038/s41567-023-02218-w</a>","short":"Z. Dunajova, B. Prats Mateu, P. Radler, K. Lim, D. Brandis, P. Velicky, J.G. Danzl, R.W. Wong, J. Elgeti, E.B. Hannezo, M. Loose, Nature Physics 19 (2023) 1916–1926.","ieee":"Z. Dunajova <i>et al.</i>, “Chiral and nematic phases of flexible active filaments,” <i>Nature Physics</i>, vol. 19. Springer Nature, pp. 1916–1926, 2023.","ista":"Dunajova Z, Prats Mateu B, Radler P, Lim K, Brandis D, Velicky P, Danzl JG, Wong RW, Elgeti J, Hannezo EB, Loose M. 2023. Chiral and nematic phases of flexible active filaments. Nature Physics. 19, 1916–1926.","mla":"Dunajova, Zuzana, et al. “Chiral and Nematic Phases of Flexible Active Filaments.” <i>Nature Physics</i>, vol. 19, Springer Nature, 2023, pp. 1916–26, doi:<a href=\"https://doi.org/10.1038/s41567-023-02218-w\">10.1038/s41567-023-02218-w</a>.","apa":"Dunajova, Z., Prats Mateu, B., Radler, P., Lim, K., Brandis, D., Velicky, P., … Loose, M. (2023). Chiral and nematic phases of flexible active filaments. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-023-02218-w\">https://doi.org/10.1038/s41567-023-02218-w</a>"},"quality_controlled":"1","_id":"13314","department":[{"_id":"JoDa"},{"_id":"EdHa"},{"_id":"MaLo"},{"_id":"GradSch"}],"article_processing_charge":"Yes (in subscription journal)","article_type":"original","language":[{"iso":"eng"}],"publisher":"Springer Nature","has_accepted_license":"1","file":[{"date_created":"2024-01-30T14:28:30Z","date_updated":"2024-01-30T14:28:30Z","file_name":"2023_NaturePhysics_Dunajova.pdf","success":1,"checksum":"bc7673ca07d37309013a86166577b2f7","access_level":"open_access","relation":"main_file","creator":"dernst","file_size":22471673,"file_id":"14916","content_type":"application/pdf"}],"author":[{"id":"4B39F286-F248-11E8-B48F-1D18A9856A87","first_name":"Zuzana","last_name":"Dunajova","full_name":"Dunajova, Zuzana"},{"full_name":"Prats Mateu, Batirtze","id":"299FE892-F248-11E8-B48F-1D18A9856A87","first_name":"Batirtze","last_name":"Prats Mateu"},{"id":"40136C2A-F248-11E8-B48F-1D18A9856A87","first_name":"Philipp","last_name":"Radler","orcid":"0000-0001-9198-2182 ","full_name":"Radler, Philipp"},{"first_name":"Keesiang","last_name":"Lim","full_name":"Lim, Keesiang"},{"first_name":"Dörte","id":"21d64d35-f128-11eb-9611-b8bcca7a12fd","last_name":"Brandis","full_name":"Brandis, Dörte"},{"full_name":"Velicky, Philipp","orcid":"0000-0002-2340-7431","last_name":"Velicky","id":"39BDC62C-F248-11E8-B48F-1D18A9856A87","first_name":"Philipp"},{"full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973","last_name":"Danzl","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","first_name":"Johann G"},{"first_name":"Richard W.","last_name":"Wong","full_name":"Wong, Richard W."},{"full_name":"Elgeti, Jens","last_name":"Elgeti","first_name":"Jens"},{"full_name":"Hannezo, Edouard B","last_name":"Hannezo","orcid":"0000-0001-6005-1561","first_name":"Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Loose, Martin","last_name":"Loose","orcid":"0000-0001-7309-9724","first_name":"Martin","id":"462D4284-F248-11E8-B48F-1D18A9856A87"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Chiral and nematic phases of flexible active filaments","doi":"10.1038/s41567-023-02218-w","publication":"Nature Physics","ec_funded":1,"oa_version":"Published Version","related_material":{"record":[{"status":"public","relation":"research_data","id":"13116"}]},"pmid":1,"volume":19,"day":"01","status":"public","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"date_created":"2023-07-27T14:44:45Z","ddc":["530"],"license":"https://creativecommons.org/licenses/by/4.0/","page":"1916-1926","external_id":{"pmid":["38075437"]},"year":"2023","acknowledgement":"This work was supported by the European Research Council through grant ERC 2015-StG-679239 and by the Austrian Science Fund (FWF) StandAlone P34607 to M.L., B. P.M. was also supported by the Kanazawa University WPI- NanoLSI Bio-SPM collaborative research program. Z.D. has received funding from Doctoral Programme of the Austrian Academy of Sciences (OeAW): Grant agreement 26360. We thank Jan Brugues (MPI CBG, Dresden, Germany), Andela Saric (ISTA, Klosterneuburg, Austria), Daniel Pearce (Uni Geneva, Switzerland) for valuable scientific input and comments on the manuscript. We are also thankful for the support by the Scientific Service Units (SSU) of IST Austria through resources provided by the Imaging and Optics Facility (IOF) and the Lab Support Facility (LSF).","intvolume":"        19","month":"12","date_published":"2023-12-01T00:00:00Z","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"oa":1,"date_updated":"2024-02-21T12:19:08Z"},{"year":"2023","external_id":{"pmid":["37463204"]},"date_updated":"2024-09-10T13:03:18Z","issue":"30","oa":1,"intvolume":"       120","month":"07","date_published":"2023-07-25T00:00:00Z","acknowledgement":"J.B. was funded by the European Union (ERC, CHORAL, project number 101039794). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. M.M. was supported by the 2019 Lopez-Loreta Prize. We would like to thank the reviewers for the insightful comments and, in particular, for suggesting the BAMP-inspired denoisers leading to AMP-AP.","article_number":"e2302028120","related_material":{"link":[{"url":"https://github.com/fcamilli95/Structured-PCA-","relation":"software"}]},"oa_version":"Published Version","doi":"10.1073/pnas.2302028120","publication":"Proceedings of the National Academy of Sciences of the United States of America","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ddc":["000"],"date_created":"2023-07-30T22:01:02Z","day":"25","status":"public","pmid":1,"volume":120,"language":[{"iso":"eng"}],"article_type":"original","article_processing_charge":"Yes (in subscription journal)","department":[{"_id":"MaMo"}],"file":[{"file_name":"2023_PNAS_Barbier.pdf","success":1,"date_created":"2023-07-31T07:30:48Z","date_updated":"2023-07-31T07:30:48Z","creator":"dernst","file_size":995933,"file_id":"13323","content_type":"application/pdf","checksum":"1fc06228afdb3aa80cf8e7766bcf9dc5","access_level":"open_access","relation":"main_file"}],"author":[{"last_name":"Barbier","first_name":"Jean","full_name":"Barbier, Jean"},{"full_name":"Camilli, Francesco","last_name":"Camilli","first_name":"Francesco"},{"orcid":"0000-0002-3242-7020","last_name":"Mondelli","id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco","full_name":"Mondelli, Marco"},{"full_name":"Sáenz, Manuel","first_name":"Manuel","last_name":"Sáenz"}],"title":"Fundamental limits in structured principal component analysis and how to reach them","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","publisher":"National Academy of Sciences","project":[{"_id":"059876FA-7A3F-11EA-A408-12923DDC885E","name":"Prix Lopez-Loretta 2019 - Marco Mondelli"}],"publication_status":"published","_id":"13315","quality_controlled":"1","citation":{"chicago":"Barbier, Jean, Francesco Camilli, Marco Mondelli, and Manuel Sáenz. “Fundamental Limits in Structured Principal Component Analysis and How to Reach Them.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences, 2023. <a href=\"https://doi.org/10.1073/pnas.2302028120\">https://doi.org/10.1073/pnas.2302028120</a>.","short":"J. Barbier, F. Camilli, M. Mondelli, M. Sáenz, Proceedings of the National Academy of Sciences of the United States of America 120 (2023).","ista":"Barbier J, Camilli F, Mondelli M, Sáenz M. 2023. Fundamental limits in structured principal component analysis and how to reach them. Proceedings of the National Academy of Sciences of the United States of America. 120(30), e2302028120.","ieee":"J. Barbier, F. Camilli, M. Mondelli, and M. Sáenz, “Fundamental limits in structured principal component analysis and how to reach them,” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 120, no. 30. National Academy of Sciences, 2023.","ama":"Barbier J, Camilli F, Mondelli M, Sáenz M. Fundamental limits in structured principal component analysis and how to reach them. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. 2023;120(30). doi:<a href=\"https://doi.org/10.1073/pnas.2302028120\">10.1073/pnas.2302028120</a>","mla":"Barbier, Jean, et al. “Fundamental Limits in Structured Principal Component Analysis and How to Reach Them.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 120, no. 30, e2302028120, National Academy of Sciences, 2023, doi:<a href=\"https://doi.org/10.1073/pnas.2302028120\">10.1073/pnas.2302028120</a>.","apa":"Barbier, J., Camilli, F., Mondelli, M., &#38; Sáenz, M. (2023). Fundamental limits in structured principal component analysis and how to reach them. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.2302028120\">https://doi.org/10.1073/pnas.2302028120</a>"},"publication_identifier":{"eissn":["1091-6490"]},"type":"journal_article","file_date_updated":"2023-07-31T07:30:48Z","abstract":[{"text":"How do statistical dependencies in measurement noise influence high-dimensional inference? To answer this, we study the paradigmatic spiked matrix model of principal components analysis (PCA), where a rank-one matrix is corrupted by additive noise. We go beyond the usual independence assumption on the noise entries, by drawing the noise from a low-order polynomial orthogonal matrix ensemble. The resulting noise correlations make the setting relevant for applications but analytically challenging. We provide characterization of the Bayes optimal limits of inference in this model. If the spike is rotation invariant, we show that standard spectral PCA is optimal. However, for more general priors, both PCA and the existing approximate message-passing algorithm (AMP) fall short of achieving the information-theoretic limits, which we compute using the replica method from statistical physics. We thus propose an AMP, inspired by the theory of adaptive Thouless–Anderson–Palmer equations, which is empirically observed to saturate the conjectured theoretical limit. This AMP comes with a rigorous state evolution analysis tracking its performance. Although we focus on specific noise distributions, our methodology can be generalized to a wide class of trace matrix ensembles at the cost of more involved expressions. Finally, despite the seemingly strong assumption of rotation-invariant noise, our theory empirically predicts algorithmic performance on real data, pointing at strong universality properties.","lang":"eng"}],"scopus_import":"1"},{"volume":12,"pmid":1,"day":"21","status":"public","ddc":["570"],"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"date_created":"2023-07-30T22:01:02Z","publication":"eLife","doi":"10.7554/eLife.84850","oa_version":"Published Version","isi":1,"acknowledgement":"This work was supported by JSPS KAKENHI grant #18K062291, and the Takeda Science Foundation to JYT., as well as JSPS KAKENHI grant #19K065710, the Takeda Science Foundation, and Life Science Foundation of Japan to JT.","article_number":"e84850","date_published":"2023-07-21T00:00:00Z","intvolume":"        12","month":"07","oa":1,"date_updated":"2023-12-13T11:37:36Z","external_id":{"isi":["001035372800001"],"pmid":["37477116"]},"year":"2023","scopus_import":"1","abstract":[{"text":"Although budding yeast has been extensively used as a model organism for studying organelle functions and intracellular vesicle trafficking, whether it possesses an independent endocytic early/sorting compartment that sorts endocytic cargos to the endo-lysosomal pathway or the recycling pathway has long been unclear. The structure and properties of the endocytic early/sorting compartment differ significantly between organisms; in plant cells, the trans-Golgi network (TGN) serves this role, whereas in mammalian cells a separate intracellular structure performs this function. The yeast syntaxin homolog Tlg2p, widely localizing to the TGN and endosomal compartments, is presumed to act as a Q-SNARE for endocytic vesicles, but which compartment is the direct target for endocytic vesicles remained unanswered. Here we demonstrate by high-speed and high-resolution 4D imaging of fluorescently labeled endocytic cargos that the Tlg2p-residing compartment within the TGN functions as the early/sorting compartment. After arriving here, endocytic cargos are recycled to the plasma membrane or transported to the yeast Rab5-residing endosomal compartment through the pathway requiring the clathrin adaptors GGAs. Interestingly, Gga2p predominantly localizes at the Tlg2p-residing compartment, and the deletion of GGAs has little effect on another TGN region where Sec7p is present but suppresses dynamics of the Tlg2-residing early/sorting compartment, indicating that the Tlg2p- and Sec7p-residing regions are discrete entities in the mutant. Thus, the Tlg2p-residing region seems to serve as an early/sorting compartment and function independently of the Sec7p-residing region within the TGN.","lang":"eng"}],"file_date_updated":"2023-07-31T07:43:00Z","type":"journal_article","publication_identifier":{"eissn":["2050-084X"]},"citation":{"apa":"Toshima, J. Y., Tsukahara, A., Nagano, M., Tojima, T., Siekhaus, D. E., Nakano, A., &#38; Toshima, J. (2023). The yeast endocytic early/sorting compartment exists as an independent sub-compartment within the trans-Golgi network. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.84850\">https://doi.org/10.7554/eLife.84850</a>","mla":"Toshima, Junko Y., et al. “The Yeast Endocytic Early/Sorting Compartment Exists as an Independent Sub-Compartment within the Trans-Golgi Network.” <i>ELife</i>, vol. 12, e84850, eLife Sciences Publications, 2023, doi:<a href=\"https://doi.org/10.7554/eLife.84850\">10.7554/eLife.84850</a>.","ama":"Toshima JY, Tsukahara A, Nagano M, et al. The yeast endocytic early/sorting compartment exists as an independent sub-compartment within the trans-Golgi network. <i>eLife</i>. 2023;12. doi:<a href=\"https://doi.org/10.7554/eLife.84850\">10.7554/eLife.84850</a>","short":"J.Y. Toshima, A. Tsukahara, M. Nagano, T. Tojima, D.E. Siekhaus, A. Nakano, J. Toshima, ELife 12 (2023).","ista":"Toshima JY, Tsukahara A, Nagano M, Tojima T, Siekhaus DE, Nakano A, Toshima J. 2023. The yeast endocytic early/sorting compartment exists as an independent sub-compartment within the trans-Golgi network. eLife. 12, e84850.","ieee":"J. Y. Toshima <i>et al.</i>, “The yeast endocytic early/sorting compartment exists as an independent sub-compartment within the trans-Golgi network,” <i>eLife</i>, vol. 12. eLife Sciences Publications, 2023.","chicago":"Toshima, Junko Y., Ayana Tsukahara, Makoto Nagano, Takuro Tojima, Daria E Siekhaus, Akihiko Nakano, and Jiro Toshima. “The Yeast Endocytic Early/Sorting Compartment Exists as an Independent Sub-Compartment within the Trans-Golgi Network.” <i>ELife</i>. eLife Sciences Publications, 2023. <a href=\"https://doi.org/10.7554/eLife.84850\">https://doi.org/10.7554/eLife.84850</a>."},"quality_controlled":"1","_id":"13316","publication_status":"published","publisher":"eLife Sciences Publications","has_accepted_license":"1","author":[{"last_name":"Toshima","first_name":"Junko Y.","full_name":"Toshima, Junko Y."},{"full_name":"Tsukahara, Ayana","last_name":"Tsukahara","first_name":"Ayana"},{"full_name":"Nagano, Makoto","last_name":"Nagano","first_name":"Makoto"},{"full_name":"Tojima, Takuro","first_name":"Takuro","last_name":"Tojima"},{"full_name":"Siekhaus, Daria E","id":"3D224B9E-F248-11E8-B48F-1D18A9856A87","first_name":"Daria E","last_name":"Siekhaus","orcid":"0000-0001-8323-8353"},{"last_name":"Nakano","first_name":"Akihiko","full_name":"Nakano, Akihiko"},{"first_name":"Jiro","last_name":"Toshima","full_name":"Toshima, Jiro"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"The yeast endocytic early/sorting compartment exists as an independent sub-compartment within the trans-Golgi network","file":[{"relation":"main_file","access_level":"open_access","checksum":"2af111a00cf5e3a956f7f0fd13199b15","content_type":"application/pdf","file_id":"13324","creator":"dernst","file_size":11980913,"date_created":"2023-07-31T07:43:00Z","date_updated":"2023-07-31T07:43:00Z","success":1,"file_name":"2023_eLife_Toshima.pdf"}],"department":[{"_id":"DaSi"}],"article_processing_charge":"Yes","article_type":"original","language":[{"iso":"eng"}]},{"date_updated":"2023-12-13T11:38:44Z","issue":"7","oa":1,"intvolume":"       190","month":"07","date_published":"2023-07-21T00:00:00Z","article_number":"128","acknowledgement":"LE, JH, and VR were supported by ERC Advanced Grant “RMTBeyond” No. 101020331. SS was supported by KAKENHI Grant Number JP22J14935 from the Japan Society for the Promotion of Science (JSPS) and Forefront Physics and Mathematics Program to Drive Transformation (FoPM), a World-leading Innovative Graduate Study (WINGS) Program, the University of Tokyo.\r\nOpen access funding provided by The University of Tokyo.","year":"2023","external_id":{"isi":["001035677200002"],"arxiv":["2304.04213"]},"date_created":"2023-07-30T22:01:02Z","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ddc":["510","530"],"day":"21","status":"public","volume":190,"isi":1,"oa_version":"Published Version","ec_funded":1,"doi":"10.1007/s10955-023-03132-4","publication":"Journal of Statistical Physics","file":[{"file_size":612755,"creator":"dernst","file_id":"13325","content_type":"application/pdf","checksum":"c2ef6b2aecfee1ad6d03fab620507c2c","relation":"main_file","access_level":"open_access","file_name":"2023_JourStatPhysics_Sugimoto.pdf","success":1,"date_created":"2023-07-31T07:49:31Z","date_updated":"2023-07-31T07:49:31Z"}],"author":[{"last_name":"Sugimoto","first_name":"Shoki","full_name":"Sugimoto, Shoki"},{"first_name":"Sven Joscha","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","last_name":"Henheik","orcid":"0000-0003-1106-327X","full_name":"Henheik, Sven Joscha"},{"id":"1949f904-edfb-11eb-afb5-e2dfddabb93b","first_name":"Volodymyr","last_name":"Riabov","full_name":"Riabov, Volodymyr"},{"last_name":"Erdös","orcid":"0000-0001-5366-9603","first_name":"László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","full_name":"Erdös, László"}],"title":"Eigenstate thermalisation hypothesis for translation invariant spin systems","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","publisher":"Springer Nature","language":[{"iso":"eng"}],"article_type":"original","article_processing_charge":"Yes (in subscription journal)","department":[{"_id":"LaEr"}],"_id":"13317","quality_controlled":"1","citation":{"chicago":"Sugimoto, Shoki, Sven Joscha Henheik, Volodymyr Riabov, and László Erdös. “Eigenstate Thermalisation Hypothesis for Translation Invariant Spin Systems.” <i>Journal of Statistical Physics</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s10955-023-03132-4\">https://doi.org/10.1007/s10955-023-03132-4</a>.","ama":"Sugimoto S, Henheik SJ, Riabov V, Erdös L. Eigenstate thermalisation hypothesis for translation invariant spin systems. <i>Journal of Statistical Physics</i>. 2023;190(7). doi:<a href=\"https://doi.org/10.1007/s10955-023-03132-4\">10.1007/s10955-023-03132-4</a>","short":"S. Sugimoto, S.J. Henheik, V. Riabov, L. Erdös, Journal of Statistical Physics 190 (2023).","ieee":"S. Sugimoto, S. J. Henheik, V. Riabov, and L. Erdös, “Eigenstate thermalisation hypothesis for translation invariant spin systems,” <i>Journal of Statistical Physics</i>, vol. 190, no. 7. Springer Nature, 2023.","ista":"Sugimoto S, Henheik SJ, Riabov V, Erdös L. 2023. Eigenstate thermalisation hypothesis for translation invariant spin systems. Journal of Statistical Physics. 190(7), 128.","mla":"Sugimoto, Shoki, et al. “Eigenstate Thermalisation Hypothesis for Translation Invariant Spin Systems.” <i>Journal of Statistical Physics</i>, vol. 190, no. 7, 128, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1007/s10955-023-03132-4\">10.1007/s10955-023-03132-4</a>.","apa":"Sugimoto, S., Henheik, S. J., Riabov, V., &#38; Erdös, L. (2023). Eigenstate thermalisation hypothesis for translation invariant spin systems. <i>Journal of Statistical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10955-023-03132-4\">https://doi.org/10.1007/s10955-023-03132-4</a>"},"publication_identifier":{"eissn":["1572-9613"],"issn":["0022-4715"]},"type":"journal_article","file_date_updated":"2023-07-31T07:49:31Z","scopus_import":"1","abstract":[{"text":"We prove the Eigenstate Thermalisation Hypothesis (ETH) for local observables in a typical translation invariant system of quantum spins with L-body interactions, where L is the number of spins. This mathematically verifies the observation first made by Santos and Rigol (Phys Rev E 82(3):031130, 2010, https://doi.org/10.1103/PhysRevE.82.031130) that the ETH may hold for systems with additional translational symmetries for a naturally restricted class of observables. We also present numerical support for the same phenomenon for Hamiltonians with local interaction.","lang":"eng"}],"arxiv":1,"project":[{"call_identifier":"H2020","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d","name":"Random matrices beyond Wigner-Dyson-Mehta"}],"publication_status":"published"},{"date_published":"2023-07-24T00:00:00Z","month":"07","acknowledgement":"The research of A.V. is supported by NSF DMS-1900286, DMS-2154402 and by Hausdorff Center for Mathematics. H.Z. is supported by the Lise Meitner fellowship, Austrian Science Fund (FWF) M3337. This work is partially supported by NSF DMS-1929284 while both authors were in residence at the Institute for Computational and Experimental Research in Mathematics in Providence, RI, during the Harmonic Analysis and Convexity program.","date_updated":"2023-12-13T11:36:20Z","oa":1,"external_id":{"isi":["001035665500001"],"arxiv":["2210.14468"]},"year":"2023","date_created":"2023-07-30T22:01:03Z","status":"public","day":"24","publication":"Mathematische Annalen","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1007/s00208-023-02680-0"}],"doi":"10.1007/s00208-023-02680-0","oa_version":"Published Version","isi":1,"publisher":"Springer Nature","title":"Noncommutative Bohnenblust–Hille inequalities","author":[{"full_name":"Volberg, Alexander","first_name":"Alexander","last_name":"Volberg"},{"last_name":"Zhang","first_name":"Haonan","id":"D8F41E38-9E66-11E9-A9E2-65C2E5697425","full_name":"Zhang, Haonan"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","department":[{"_id":"JaMa"}],"language":[{"iso":"eng"}],"article_type":"original","citation":{"mla":"Volberg, Alexander, and Haonan Zhang. “Noncommutative Bohnenblust–Hille Inequalities.” <i>Mathematische Annalen</i>, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1007/s00208-023-02680-0\">10.1007/s00208-023-02680-0</a>.","apa":"Volberg, A., &#38; Zhang, H. (2023). Noncommutative Bohnenblust–Hille inequalities. <i>Mathematische Annalen</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00208-023-02680-0\">https://doi.org/10.1007/s00208-023-02680-0</a>","chicago":"Volberg, Alexander, and Haonan Zhang. “Noncommutative Bohnenblust–Hille Inequalities.” <i>Mathematische Annalen</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s00208-023-02680-0\">https://doi.org/10.1007/s00208-023-02680-0</a>.","ama":"Volberg A, Zhang H. Noncommutative Bohnenblust–Hille inequalities. <i>Mathematische Annalen</i>. 2023. doi:<a href=\"https://doi.org/10.1007/s00208-023-02680-0\">10.1007/s00208-023-02680-0</a>","short":"A. Volberg, H. Zhang, Mathematische Annalen (2023).","ieee":"A. Volberg and H. Zhang, “Noncommutative Bohnenblust–Hille inequalities,” <i>Mathematische Annalen</i>. Springer Nature, 2023.","ista":"Volberg A, Zhang H. 2023. Noncommutative Bohnenblust–Hille inequalities. Mathematische Annalen."},"publication_identifier":{"eissn":["1432-1807"],"issn":["0025-5831"]},"scopus_import":"1","arxiv":1,"abstract":[{"lang":"eng","text":"Bohnenblust–Hille inequalities for Boolean cubes have been proven with dimension-free constants that grow subexponentially in the degree (Defant et al. in Math Ann 374(1):653–680, 2019). Such inequalities have found great applications in learning low-degree Boolean functions (Eskenazis and Ivanisvili in Proceedings of the 54th annual ACM SIGACT symposium on theory of computing, pp 203–207, 2022). Motivated by learning quantum observables, a qubit analogue of Bohnenblust–Hille inequality for Boolean cubes was recently conjectured in Rouzé et al. (Quantum Talagrand, KKL and Friedgut’s theorems and the learnability of quantum Boolean functions, 2022. arXiv preprint arXiv:2209.07279). The conjecture was resolved in Huang et al. (Learning to predict arbitrary quantum processes, 2022. arXiv preprint arXiv:2210.14894). In this paper, we give a new proof of these Bohnenblust–Hille inequalities for qubit system with constants that are dimension-free and of exponential growth in the degree. As a consequence, we obtain a junta theorem for low-degree polynomials. Using similar ideas, we also study learning problems of low degree quantum observables and Bohr’s radius phenomenon on quantum Boolean cubes."}],"type":"journal_article","_id":"13318","quality_controlled":"1","project":[{"_id":"eb958bca-77a9-11ec-83b8-c565cb50d8d6","name":"Curvature-dimension in noncommutative analysis","grant_number":"M03337"}],"publication_status":"epub_ahead"},{"date_updated":"2024-01-30T12:16:32Z","oa":1,"intvolume":"       403","month":"10","date_published":"2023-10-01T00:00:00Z","acknowledgement":"The authors are grateful to Martijn Caspers for helpful comments on a preliminary version of this manuscript. M. V. was supported by the NWO Vidi grant VI.Vidi.192.018 ‘Non-commutative harmonic analysis and rigidity of operator algebras’. M. W. was funded by the Austrian Science Fund (FWF) under the Esprit Programme [ESP 156]. For the purpose of Open Access, the authors have applied a CC BY public copyright licence to any Author Accepted Manuscript (AAM) version arising from this submission. Open access funding provided by Austrian Science Fund (FWF).","year":"2023","external_id":{"arxiv":["2303.15949"],"isi":["001033655400002"]},"page":"381-416","ddc":["510"],"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"date_created":"2023-07-30T22:01:03Z","day":"01","status":"public","volume":403,"isi":1,"oa_version":"Published Version","doi":"10.1007/s00220-023-04795-6","publication":"Communications in Mathematical Physics","file":[{"date_updated":"2024-01-30T12:15:11Z","date_created":"2024-01-30T12:15:11Z","success":1,"file_name":"2023_CommMathPhysics_Vernooij.pdf","access_level":"open_access","checksum":"cca204e81891270216a0c84eb8bcd398","relation":"main_file","file_id":"14905","content_type":"application/pdf","creator":"dernst","file_size":481209}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Matthijs","last_name":"Vernooij","full_name":"Vernooij, Matthijs"},{"last_name":"Wirth","orcid":"0000-0002-0519-4241","id":"88644358-0A0E-11EA-8FA5-49A33DDC885E","first_name":"Melchior","full_name":"Wirth, Melchior"}],"title":"Derivations and KMS-symmetric quantum Markov semigroups","has_accepted_license":"1","publisher":"Springer Nature","language":[{"iso":"eng"}],"article_type":"original","article_processing_charge":"Yes (via OA deal)","department":[{"_id":"JaMa"}],"_id":"13319","quality_controlled":"1","citation":{"short":"M. Vernooij, M. Wirth, Communications in Mathematical Physics 403 (2023) 381–416.","ista":"Vernooij M, Wirth M. 2023. Derivations and KMS-symmetric quantum Markov semigroups. Communications in Mathematical Physics. 403, 381–416.","ieee":"M. Vernooij and M. Wirth, “Derivations and KMS-symmetric quantum Markov semigroups,” <i>Communications in Mathematical Physics</i>, vol. 403. Springer Nature, pp. 381–416, 2023.","ama":"Vernooij M, Wirth M. Derivations and KMS-symmetric quantum Markov semigroups. <i>Communications in Mathematical Physics</i>. 2023;403:381-416. doi:<a href=\"https://doi.org/10.1007/s00220-023-04795-6\">10.1007/s00220-023-04795-6</a>","chicago":"Vernooij, Matthijs, and Melchior Wirth. “Derivations and KMS-Symmetric Quantum Markov Semigroups.” <i>Communications in Mathematical Physics</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s00220-023-04795-6\">https://doi.org/10.1007/s00220-023-04795-6</a>.","apa":"Vernooij, M., &#38; Wirth, M. (2023). Derivations and KMS-symmetric quantum Markov semigroups. <i>Communications in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00220-023-04795-6\">https://doi.org/10.1007/s00220-023-04795-6</a>","mla":"Vernooij, Matthijs, and Melchior Wirth. “Derivations and KMS-Symmetric Quantum Markov Semigroups.” <i>Communications in Mathematical Physics</i>, vol. 403, Springer Nature, 2023, pp. 381–416, doi:<a href=\"https://doi.org/10.1007/s00220-023-04795-6\">10.1007/s00220-023-04795-6</a>."},"publication_identifier":{"eissn":["1432-0916"],"issn":["0010-3616"]},"file_date_updated":"2024-01-30T12:15:11Z","type":"journal_article","scopus_import":"1","abstract":[{"lang":"eng","text":"We prove that the generator of the L2 implementation of a KMS-symmetric quantum Markov semigroup can be expressed as the square of a derivation with values in a Hilbert bimodule, extending earlier results by Cipriani and Sauvageot for tracially symmetric semigroups and the second-named author for GNS-symmetric semigroups. This result hinges on the introduction of a new completely positive map on the algebra of bounded operators on the GNS Hilbert space. This transformation maps symmetric Markov operators to symmetric Markov operators and is essential to obtain the required inner product on the Hilbert bimodule."}],"arxiv":1,"project":[{"grant_number":"ESP156_N","name":"Gradient flow techniques for quantum Markov semigroups","_id":"34c6ea2d-11ca-11ed-8bc3-c04f3c502833"}],"publication_status":"published"},{"status":"public","day":"01","date_created":"2023-07-30T22:01:04Z","isi":1,"oa_version":"Preprint","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2212.01572","open_access":"1"}],"doi":"10.1109/ITW55543.2023.10160238","publication":"2023 IEEE Information Theory Workshop","oa":1,"date_updated":"2024-09-10T13:03:19Z","acknowledgement":"Marco Mondelli was partially supported by the 2019 Lopez-Loreta prize.","month":"05","date_published":"2023-05-01T00:00:00Z","year":"2023","conference":{"name":"ITW: Information Theory Workshop","end_date":"2023-04-28","start_date":"2023-04-23","location":"Saint-Malo, France"},"external_id":{"isi":["001031733100053"],"arxiv":["2212.01572"]},"page":"294-298","quality_controlled":"1","_id":"13321","type":"conference","abstract":[{"text":"We consider the problem of reconstructing the signal and the hidden variables from observations coming from a multi-layer network with rotationally invariant weight matrices. The multi-layer structure models inference from deep generative priors, and the rotational invariance imposed on the weights generalizes the i.i.d. Gaussian assumption by allowing for a complex correlation structure, which is typical in applications. In this work, we present a new class of approximate message passing (AMP) algorithms and give a state evolution recursion which precisely characterizes their performance in the large system limit. In contrast with the existing multi-layer VAMP (ML-VAMP) approach, our proposed AMP – dubbed multilayer rotationally invariant generalized AMP (ML-RI-GAMP) – provides a natural generalization beyond Gaussian designs, in the sense that it recovers the existing Gaussian AMP as a special case. Furthermore, ML-RI-GAMP exhibits a significantly lower complexity than ML-VAMP, as the computationally intensive singular value decomposition is replaced by an estimation of the moments of the design matrices. Finally, our numerical results show that this complexity gain comes at little to no cost in the performance of the algorithm.","lang":"eng"}],"scopus_import":"1","arxiv":1,"citation":{"apa":"Xu, Y., Hou, T. Q., Liang, S. S., &#38; Mondelli, M. (2023). Approximate message passing for multi-layer estimation in rotationally invariant models. In <i>2023 IEEE Information Theory Workshop</i> (pp. 294–298). Saint-Malo, France: Institute of Electrical and Electronics Engineers. <a href=\"https://doi.org/10.1109/ITW55543.2023.10160238\">https://doi.org/10.1109/ITW55543.2023.10160238</a>","mla":"Xu, Yizhou, et al. “Approximate Message Passing for Multi-Layer Estimation in Rotationally Invariant Models.” <i>2023 IEEE Information Theory Workshop</i>, Institute of Electrical and Electronics Engineers, 2023, pp. 294–98, doi:<a href=\"https://doi.org/10.1109/ITW55543.2023.10160238\">10.1109/ITW55543.2023.10160238</a>.","short":"Y. Xu, T.Q. Hou, S.S. Liang, M. Mondelli, in:, 2023 IEEE Information Theory Workshop, Institute of Electrical and Electronics Engineers, 2023, pp. 294–298.","ista":"Xu Y, Hou TQ, Liang SS, Mondelli M. 2023. Approximate message passing for multi-layer estimation in rotationally invariant models. 2023 IEEE Information Theory Workshop. ITW: Information Theory Workshop, 294–298.","ieee":"Y. Xu, T. Q. Hou, S. S. Liang, and M. Mondelli, “Approximate message passing for multi-layer estimation in rotationally invariant models,” in <i>2023 IEEE Information Theory Workshop</i>, Saint-Malo, France, 2023, pp. 294–298.","ama":"Xu Y, Hou TQ, Liang SS, Mondelli M. Approximate message passing for multi-layer estimation in rotationally invariant models. In: <i>2023 IEEE Information Theory Workshop</i>. Institute of Electrical and Electronics Engineers; 2023:294-298. doi:<a href=\"https://doi.org/10.1109/ITW55543.2023.10160238\">10.1109/ITW55543.2023.10160238</a>","chicago":"Xu, Yizhou, Tian Qi Hou, Shan Suo Liang, and Marco Mondelli. “Approximate Message Passing for Multi-Layer Estimation in Rotationally Invariant Models.” In <i>2023 IEEE Information Theory Workshop</i>, 294–98. Institute of Electrical and Electronics Engineers, 2023. <a href=\"https://doi.org/10.1109/ITW55543.2023.10160238\">https://doi.org/10.1109/ITW55543.2023.10160238</a>."},"publication_identifier":{"isbn":["9798350301496"],"eissn":["2475-4218"]},"publication_status":"published","project":[{"_id":"059876FA-7A3F-11EA-A408-12923DDC885E","name":"Prix Lopez-Loretta 2019 - Marco Mondelli"}],"title":"Approximate message passing for multi-layer estimation in rotationally invariant models","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"full_name":"Xu, Yizhou","first_name":"Yizhou","last_name":"Xu"},{"full_name":"Hou, Tian Qi","last_name":"Hou","first_name":"Tian Qi"},{"last_name":"Liang","first_name":"Shan Suo","full_name":"Liang, Shan Suo"},{"last_name":"Mondelli","orcid":"0000-0002-3242-7020","first_name":"Marco","id":"27EB676C-8706-11E9-9510-7717E6697425","full_name":"Mondelli, Marco"}],"publisher":"Institute of Electrical and Electronics Engineers","language":[{"iso":"eng"}],"department":[{"_id":"MaMo"}],"article_processing_charge":"No"},{"language":[{"iso":"eng"}],"article_processing_charge":"No","department":[{"_id":"GradSch"},{"_id":"UlWa"}],"file":[{"date_updated":"2023-07-31T10:16:32Z","date_created":"2023-07-31T10:16:32Z","file_name":"Exterior Algebra and Combinatorics.zip","relation":"source_file","checksum":"96ee518d796d02af71395622c45de03c","access_level":"closed","content_type":"application/x-zip-compressed","file_id":"13333","file_size":28684,"creator":"skoese"},{"access_level":"open_access","checksum":"f610f4713f88bc477de576aaa46b114e","relation":"main_file","file_size":4953418,"creator":"skoese","content_type":"application/pdf","file_id":"13480","date_created":"2023-08-03T15:28:55Z","date_updated":"2023-08-03T15:28:55Z","file_name":"thesis-pdfa.pdf","success":1}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","author":[{"first_name":"Seyda","id":"8ba3170d-dc85-11ea-9058-c4251c96a6eb","last_name":"Köse","full_name":"Köse, Seyda"}],"title":"Exterior algebra and combinatorics","has_accepted_license":"1","publisher":"Institute of Science and Technology Austria","publication_status":"published","_id":"13331","publication_identifier":{"issn":["2791-4585"]},"citation":{"chicago":"Köse, Seyda. “Exterior Algebra and Combinatorics.” Institute of Science and Technology Austria, 2023. <a href=\"https://doi.org/10.15479/at:ista:13331\">https://doi.org/10.15479/at:ista:13331</a>.","ieee":"S. Köse, “Exterior algebra and combinatorics,” Institute of Science and Technology Austria, 2023.","ista":"Köse S. 2023. Exterior algebra and combinatorics. Institute of Science and Technology Austria.","short":"S. Köse, Exterior Algebra and Combinatorics, Institute of Science and Technology Austria, 2023.","ama":"Köse S. Exterior algebra and combinatorics. 2023. doi:<a href=\"https://doi.org/10.15479/at:ista:13331\">10.15479/at:ista:13331</a>","mla":"Köse, Seyda. <i>Exterior Algebra and Combinatorics</i>. Institute of Science and Technology Austria, 2023, doi:<a href=\"https://doi.org/10.15479/at:ista:13331\">10.15479/at:ista:13331</a>.","apa":"Köse, S. (2023). <i>Exterior algebra and combinatorics</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:13331\">https://doi.org/10.15479/at:ista:13331</a>"},"type":"dissertation","file_date_updated":"2023-08-03T15:28:55Z","abstract":[{"lang":"eng","text":"The extension of extremal combinatorics to the setting of exterior algebra is a work\r\nin progress that gained attention recently. In this thesis, we study the combinatorial structure of exterior algebra by introducing a dictionary that translates the notions from the set systems into the framework of exterior algebra. We show both generalizations of celebrated Erdös--Ko--Rado theorem and Hilton--Milner theorem to the setting of exterior algebra in the simplest non-trivial case of two-forms.\r\n"}],"year":"2023","page":"26","date_updated":"2023-10-04T11:54:56Z","oa":1,"month":"07","date_published":"2023-07-31T00:00:00Z","alternative_title":["ISTA Master's Thesis"],"related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"12680"}]},"oa_version":"Published Version","degree_awarded":"MS","doi":"10.15479/at:ista:13331","date_created":"2023-07-31T10:20:55Z","ddc":["510","516"],"supervisor":[{"id":"36690CA2-F248-11E8-B48F-1D18A9856A87","first_name":"Uli","last_name":"Wagner","orcid":"0000-0002-1494-0568","full_name":"Wagner, Uli"}],"status":"public","day":"31"},{"doi":"10.5281/ZENODO.8059564","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.8059564","open_access":"1"}],"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"13258"}]},"oa_version":"Published Version","citation":{"chicago":"Kleshnina, Maria. “Kleshnina/Stochgames_info: The Effect of Environmental Information on Evolution of Cooperation in Stochastic Games.” Zenodo, 2023. <a href=\"https://doi.org/10.5281/ZENODO.8059564\">https://doi.org/10.5281/ZENODO.8059564</a>.","ama":"Kleshnina M. kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games. 2023. doi:<a href=\"https://doi.org/10.5281/ZENODO.8059564\">10.5281/ZENODO.8059564</a>","short":"M. Kleshnina, (2023).","ieee":"M. Kleshnina, “kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games.” Zenodo, 2023.","ista":"Kleshnina M. 2023. kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.8059564\">10.5281/ZENODO.8059564</a>.","mla":"Kleshnina, Maria. <i>Kleshnina/Stochgames_info: The Effect of Environmental Information on Evolution of Cooperation in Stochastic Games</i>. Zenodo, 2023, doi:<a href=\"https://doi.org/10.5281/ZENODO.8059564\">10.5281/ZENODO.8059564</a>.","apa":"Kleshnina, M. (2023). kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.8059564\">https://doi.org/10.5281/ZENODO.8059564</a>"},"type":"research_data_reference","_id":"13336","date_created":"2023-07-31T11:30:46Z","ddc":["000"],"status":"public","day":"20","article_processing_charge":"No","department":[{"_id":"KrCh"}],"year":"2023","date_published":"2023-06-20T00:00:00Z","month":"06","publisher":"Zenodo","date_updated":"2025-07-14T09:09:53Z","title":"kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games","author":[{"id":"4E21749C-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","last_name":"Kleshnina","full_name":"Kleshnina, Maria"}],"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"page":"1357-1363","year":"2023","acknowledgement":"We acknowledge funding from the European Union’s Horizon 2020 Research and Innovation Program [European Research Council grants 820008 (Ra.K.) and 101045223 (A.P.) and Marie Skłodowska-Curie grants 812868 (J.G.) and 101022777 (T.-P.R.)], the Academy of Finland [Center of Excellence Programme LIBER grant 346107 (A.P.), Flagship Programme PREIN grant 320165 (A.P.), and Postdoctoral Researcher grant 340103 (T.-P.R.)], Zuckerman STEM Leadership Program Fellowship (J.R.C.), President’s PhD Scholarship (M.O.), and the EPSRC [Established Career Fellowship grant EP/R00188X/1 (M.J.F.)].","month":"09","intvolume":"       381","date_published":"2023-09-22T00:00:00Z","issue":"6664","oa":1,"date_updated":"2023-10-03T08:11:26Z","doi":"10.1126/science.adh9059","main_file_link":[{"open_access":"1","url":"https://doi.org/10.26434/chemrxiv-2023-gq2h0"}],"publication":"Science","oa_version":"Preprint","volume":381,"day":"22","status":"public","date_created":"2023-08-01T08:26:15Z","department":[{"_id":"RaKl"}],"article_processing_charge":"No","article_type":"original","language":[{"iso":"eng"}],"publisher":"American Association for the Advancement of Science","title":"Disequilibrating azoarenes by visible-light sensitization under confinement","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Julius","last_name":"Gemen","full_name":"Gemen, Julius"},{"last_name":"Church","first_name":"Jonathan R.","full_name":"Church, Jonathan R."},{"first_name":"Tero-Petri","last_name":"Ruoko","full_name":"Ruoko, Tero-Petri"},{"first_name":"Nikita","last_name":"Durandin","full_name":"Durandin, Nikita"},{"last_name":"Białek","first_name":"Michał J.","full_name":"Białek, Michał J."},{"full_name":"Weissenfels, Maren","first_name":"Maren","last_name":"Weissenfels"},{"full_name":"Feller, Moran","first_name":"Moran","last_name":"Feller"},{"last_name":"Kazes","first_name":"Miri","full_name":"Kazes, Miri"},{"last_name":"Borin","first_name":"Veniamin A.","full_name":"Borin, Veniamin A."},{"last_name":"Odaybat","first_name":"Magdalena","full_name":"Odaybat, Magdalena"},{"full_name":"Kalepu, Rishir","first_name":"Rishir","last_name":"Kalepu"},{"full_name":"Diskin-Posner, Yael","first_name":"Yael","last_name":"Diskin-Posner"},{"full_name":"Oron, Dan","last_name":"Oron","first_name":"Dan"},{"full_name":"Fuchter, Matthew J.","last_name":"Fuchter","first_name":"Matthew J."},{"full_name":"Priimagi, Arri","last_name":"Priimagi","first_name":"Arri"},{"first_name":"Igor","last_name":"Schapiro","full_name":"Schapiro, Igor"},{"full_name":"Klajn, Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal"}],"publication_status":"published","type":"journal_article","scopus_import":"1","abstract":[{"lang":"eng","text":"Photoisomerization of azobenzenes from their stable E isomer to the metastable Z state is the basis of numerous applications of these molecules. However, this reaction typically requires ultraviolet light, which limits applicability. In this study, we introduce disequilibration by sensitization under confinement (DESC), a supramolecular approach to induce the E-to-Z isomerization by using light of a desired color, including red. DESC relies on a combination of a macrocyclic host and a photosensitizer, which act together to selectively bind and sensitize E-azobenzenes for isomerization. The Z isomer lacks strong affinity for and is expelled from the host, which can then convert additional E-azobenzenes to the Z state. In this way, the host–photosensitizer complex converts photon energy into chemical energy in the form of out-of-equilibrium photostationary states, including ones that cannot be accessed through direct photoexcitation."}],"citation":{"ama":"Gemen J, Church JR, Ruoko T-P, et al. Disequilibrating azoarenes by visible-light sensitization under confinement. <i>Science</i>. 2023;381(6664):1357-1363. doi:<a href=\"https://doi.org/10.1126/science.adh9059\">10.1126/science.adh9059</a>","ieee":"J. Gemen <i>et al.</i>, “Disequilibrating azoarenes by visible-light sensitization under confinement,” <i>Science</i>, vol. 381, no. 6664. American Association for the Advancement of Science, pp. 1357–1363, 2023.","short":"J. Gemen, J.R. Church, T.-P. Ruoko, N. Durandin, M.J. Białek, M. Weissenfels, M. Feller, M. Kazes, V.A. Borin, M. Odaybat, R. Kalepu, Y. Diskin-Posner, D. Oron, M.J. Fuchter, A. Priimagi, I. Schapiro, R. Klajn, Science 381 (2023) 1357–1363.","ista":"Gemen J, Church JR, Ruoko T-P, Durandin N, Białek MJ, Weissenfels M, Feller M, Kazes M, Borin VA, Odaybat M, Kalepu R, Diskin-Posner Y, Oron D, Fuchter MJ, Priimagi A, Schapiro I, Klajn R. 2023. Disequilibrating azoarenes by visible-light sensitization under confinement. Science. 381(6664), 1357–1363.","chicago":"Gemen, Julius, Jonathan R. Church, Tero-Petri Ruoko, Nikita Durandin, Michał J. Białek, Maren Weissenfels, Moran Feller, et al. “Disequilibrating Azoarenes by Visible-Light Sensitization under Confinement.” <i>Science</i>. American Association for the Advancement of Science, 2023. <a href=\"https://doi.org/10.1126/science.adh9059\">https://doi.org/10.1126/science.adh9059</a>.","apa":"Gemen, J., Church, J. R., Ruoko, T.-P., Durandin, N., Białek, M. J., Weissenfels, M., … Klajn, R. (2023). Disequilibrating azoarenes by visible-light sensitization under confinement. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.adh9059\">https://doi.org/10.1126/science.adh9059</a>","mla":"Gemen, Julius, et al. “Disequilibrating Azoarenes by Visible-Light Sensitization under Confinement.” <i>Science</i>, vol. 381, no. 6664, American Association for the Advancement of Science, 2023, pp. 1357–63, doi:<a href=\"https://doi.org/10.1126/science.adh9059\">10.1126/science.adh9059</a>."},"publication_identifier":{"eissn":["1095-9203"]},"quality_controlled":"1","_id":"13340"},{"oa_version":"Published Version","publication":"EMBO Journal","doi":"10.15252/embj.2023114557","status":"public","day":"21","date_created":"2023-08-01T08:59:06Z","tmp":{"short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"ddc":["570"],"pmid":1,"year":"2023","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","external_id":{"pmid":["37987147"]},"oa":1,"date_updated":"2023-11-27T08:47:45Z","acknowledgement":"We thank Christoph Mayr and Bingzhi Wang for initial experiments on amoeboid nucleokinesis, Ana-Maria Lennon-Duménil and Aline Yatim for bone marrow from MyoIIA-Flox*CD11c-Cre mice, Michael Sixt and Aglaja Kopf for EMTB-mCherry, EB3-mCherry, Lifeact-GFP, Lfc knockout, and Myh9-GFP expressing HoxB8 cells, Malte Benjamin Braun, Mauricio Ruiz, and Madeleine T. Schmitt for critical reading of the manuscript, and the Core Facility Bioimaging, the Core Facility Flow Cytometry, and the Animal Core Facility of the Biomedical Center (BMC) for excellent support. This study was supported by the Peter Hans Hofschneider Professorship of the foundation “Stiftung Experimentelle Biomedizin” (to JR), the LMU Institutional Strategy LMU-Excellent within the framework of the German Excellence Initiative (to JR), and the Deutsche Forschungsgemeinschaft (DFG; German Research Foundation; SFB914 project A12, to JR), and the CZI grant DAF2020-225401 (https://doi.org/10.37921/120055ratwvi) from the Chan Zuckerberg Initiative DAF (to RH; an advised fund of Silicon Valley Community Foundation (funder https://doi.org/10.13039/100014989)). Open Access funding enabled and organized by Projekt DEAL.","article_number":"e114557","date_published":"2023-11-21T00:00:00Z","month":"11","publication_status":"published","quality_controlled":"1","_id":"13342","scopus_import":"1","abstract":[{"lang":"eng","text":"Motile cells moving in multicellular organisms encounter microenvironments of locally heterogeneous mechanochemical composition. Individual compositional parameters like chemotactic signals, adhesiveness, and pore sizes are well known to be sensed by motile cells, providing individual guidance cues for cellular pathfinding. However, motile cells encounter diverse mechanochemical signals at the same time, raising the question of how cells respond to locally diverse and potentially competing signals on their migration routes. Here, we reveal that motile amoeboid cells require nuclear repositioning, termed nucleokinesis, for adaptive pathfinding in heterogeneous mechanochemical microenvironments. Using mammalian immune cells and the amoeba<jats:italic>Dictyostelium discoideum</jats:italic>, we discover that frequent, rapid and long-distance nucleokinesis is a basic component of amoeboid pathfinding, enabling cells to reorientate quickly between locally competing cues. Amoeboid nucleokinesis comprises a two-step cell polarity switch and is driven by myosin II-forces, sliding the nucleus from a ‘losing’ to the ‘winning’ leading edge to re-adjust the nuclear to the cellular path. Impaired nucleokinesis distorts fast path adaptions and causes cellular arrest in the microenvironment. Our findings establish that nucleokinesis is required for amoeboid cell navigation. Given that motile single-cell amoebae, many immune cells, and some cancer cells utilize an amoeboid migration strategy, these results suggest that amoeboid nucleokinesis underlies cellular navigation during unicellular biology, immunity, and disease."}],"type":"journal_article","file_date_updated":"2023-11-27T08:45:56Z","publication_identifier":{"issn":["0261-4189"],"eissn":["1460-2075"]},"citation":{"mla":"Kroll, Janina, et al. “Adaptive Pathfinding by Nucleokinesis during Amoeboid Migration.” <i>EMBO Journal</i>, e114557, Embo Press, 2023, doi:<a href=\"https://doi.org/10.15252/embj.2023114557\">10.15252/embj.2023114557</a>.","apa":"Kroll, J., Hauschild, R., Kuznetcov, A., Stefanowski, K., Hermann, M. D., Merrin, J., … Renkawitz, J. (2023). Adaptive pathfinding by nucleokinesis during amoeboid migration. <i>EMBO Journal</i>. Embo Press. <a href=\"https://doi.org/10.15252/embj.2023114557\">https://doi.org/10.15252/embj.2023114557</a>","chicago":"Kroll, Janina, Robert Hauschild, Arthur Kuznetcov, Kasia Stefanowski, Monika D. Hermann, Jack Merrin, Lubuna B Shafeek, Annette Müller-Taubenberger, and Jörg Renkawitz. “Adaptive Pathfinding by Nucleokinesis during Amoeboid Migration.” <i>EMBO Journal</i>. Embo Press, 2023. <a href=\"https://doi.org/10.15252/embj.2023114557\">https://doi.org/10.15252/embj.2023114557</a>.","ieee":"J. Kroll <i>et al.</i>, “Adaptive pathfinding by nucleokinesis during amoeboid migration,” <i>EMBO Journal</i>. Embo Press, 2023.","short":"J. Kroll, R. Hauschild, A. Kuznetcov, K. Stefanowski, M.D. Hermann, J. Merrin, L.B. Shafeek, A. Müller-Taubenberger, J. Renkawitz, EMBO Journal (2023).","ista":"Kroll J, Hauschild R, Kuznetcov A, Stefanowski K, Hermann MD, Merrin J, Shafeek LB, Müller-Taubenberger A, Renkawitz J. 2023. Adaptive pathfinding by nucleokinesis during amoeboid migration. EMBO Journal., e114557.","ama":"Kroll J, Hauschild R, Kuznetcov A, et al. Adaptive pathfinding by nucleokinesis during amoeboid migration. <i>EMBO Journal</i>. 2023. doi:<a href=\"https://doi.org/10.15252/embj.2023114557\">10.15252/embj.2023114557</a>"},"article_type":"original","language":[{"iso":"eng"}],"department":[{"_id":"NanoFab"},{"_id":"Bio"}],"article_processing_charge":"Yes (via OA deal)","title":"Adaptive pathfinding by nucleokinesis during amoeboid migration","author":[{"full_name":"Kroll, Janina","last_name":"Kroll","first_name":"Janina"},{"full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","orcid":"0000-0001-9843-3522","last_name":"Hauschild"},{"full_name":"Kuznetcov, Arthur","first_name":"Arthur","last_name":"Kuznetcov"},{"full_name":"Stefanowski, Kasia","first_name":"Kasia","last_name":"Stefanowski"},{"full_name":"Hermann, Monika D.","first_name":"Monika D.","last_name":"Hermann"},{"full_name":"Merrin, Jack","orcid":"0000-0001-5145-4609","last_name":"Merrin","first_name":"Jack","id":"4515C308-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Shafeek, Lubuna B","first_name":"Lubuna B","id":"3CD37A82-F248-11E8-B48F-1D18A9856A87","last_name":"Shafeek","orcid":"0000-0001-7180-6050"},{"last_name":"Müller-Taubenberger","first_name":"Annette","full_name":"Müller-Taubenberger, Annette"},{"first_name":"Jörg","id":"3F0587C8-F248-11E8-B48F-1D18A9856A87","last_name":"Renkawitz","orcid":"0000-0003-2856-3369","full_name":"Renkawitz, Jörg"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"date_updated":"2023-11-27T08:45:56Z","date_created":"2023-11-27T08:45:56Z","success":1,"file_name":"2023_EmboJournal_Kroll.pdf","access_level":"open_access","checksum":"6261d0041c7e8d284c39712c40079730","relation":"main_file","file_id":"14611","content_type":"application/pdf","file_size":4862497,"creator":"dernst"}],"publisher":"Embo Press","has_accepted_license":"1"},{"month":"08","intvolume":"       952","date_published":"2023-08-01T00:00:00Z","acknowledgement":"This paper includes data collected by the Kepler mission and obtained from the MAST data archive at the Space Telescope Science Institute (STScI). Funding for the Kepler mission is provided by the NASA Science Mission Directorate. STScI is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5–26555. We acknowledge that this research was supported in part by the National Science Foundation under grant No. NSF PHY-1748958. S.M. acknowledges support from the Spanish Ministry of Science and Innovation (MICINN) with the Ramón y Cajal fellowship No. RYC-2015-17697, the grant No. PID2019-107061GB-C66, and through AEI under the Severo Ochoa Centres of Excellence Programme 2020–2023 (CEX2019-000920-S). S.M. and D.G.R. acknowledge support from the Spanish Ministry of Science and Innovation (MICINN) with the grant No. PID2019-107187GB-I00. Z.R.C. acknowledges support from National Aeronautics and Space Administration via the TESS Guest Investigator Program (grant No. 80NSSC18K18584). The work presented here was partially supported by the NASA grant NNX17AF27G. A.R.G.S. acknowledges the support by FCT through national funds and by FEDER through COMPETE2020 by the following grants: UIDB/04434/2020 and UIDP/04434/2020. A.R.G.S. is supported by FCT through the work contract No. 2020.02480.CEECIND/CP1631/CT0001. R.A.G., L.A., and S.N.B. acknowledge the support from PLATO and GOLF CNES grants. S.N.B. acknowledges support from PLATO ASI-INAF agreement No. 2015-019-R.1-2018.","article_number":"131","date_updated":"2023-12-13T12:00:15Z","keyword":["Space and Planetary Science","Astronomy and Astrophysics"],"issue":"2","oa":1,"external_id":{"isi":["001034185700001"]},"year":"2023","volume":952,"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ddc":["520"],"date_created":"2023-08-01T14:19:16Z","day":"01","status":"public","doi":"10.3847/1538-4357/acd118","publication":"The Astrophysical Journal","isi":1,"oa_version":"Published Version","has_accepted_license":"1","publisher":"American Astronomical Society","file":[{"success":1,"file_name":"2023_AstrophysicalJour_Mathur.pdf","date_created":"2023-08-02T07:42:26Z","date_updated":"2023-08-02T07:42:26Z","content_type":"application/pdf","file_id":"13448","file_size":4192386,"creator":"dernst","checksum":"f12452834d7ed6748dbf5ace18af4723","relation":"main_file","access_level":"open_access"}],"author":[{"full_name":"Mathur, Savita","last_name":"Mathur","first_name":"Savita"},{"full_name":"Claytor, Zachary R.","first_name":"Zachary R.","last_name":"Claytor"},{"full_name":"Santos, Ângela R. G.","first_name":"Ângela R. G.","last_name":"Santos"},{"last_name":"García","first_name":"Rafael A.","full_name":"García, Rafael A."},{"full_name":"Amard, Louis","first_name":"Louis","last_name":"Amard"},{"full_name":"Bugnet, Lisa Annabelle","last_name":"Bugnet","orcid":"0000-0003-0142-4000","first_name":"Lisa Annabelle","id":"d9edb345-f866-11ec-9b37-d119b5234501"},{"last_name":"Corsaro","first_name":"Enrico","full_name":"Corsaro, Enrico"},{"full_name":"Bonanno, Alfio","last_name":"Bonanno","first_name":"Alfio"},{"first_name":"Sylvain N.","last_name":"Breton","full_name":"Breton, Sylvain N."},{"full_name":"Godoy-Rivera, Diego","first_name":"Diego","last_name":"Godoy-Rivera"},{"full_name":"Pinsonneault, Marc H.","first_name":"Marc H.","last_name":"Pinsonneault"},{"last_name":"van Saders","first_name":"Jennifer","full_name":"van Saders, Jennifer"}],"title":"Magnetic activity evolution of solar-like stars. I. Sph–age relation derived from Kepler observations","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"Yes","department":[{"_id":"LiBu"}],"language":[{"iso":"eng"}],"article_type":"original","publication_identifier":{"eissn":["1538-4357"],"issn":["0004-637X"]},"citation":{"ieee":"S. Mathur <i>et al.</i>, “Magnetic activity evolution of solar-like stars. I. Sph–age relation derived from Kepler observations,” <i>The Astrophysical Journal</i>, vol. 952, no. 2. American Astronomical Society, 2023.","short":"S. Mathur, Z.R. Claytor, Â.R.G. Santos, R.A. García, L. Amard, L.A. Bugnet, E. Corsaro, A. Bonanno, S.N. Breton, D. Godoy-Rivera, M.H. Pinsonneault, J. van Saders, The Astrophysical Journal 952 (2023).","ista":"Mathur S, Claytor ZR, Santos ÂRG, García RA, Amard L, Bugnet LA, Corsaro E, Bonanno A, Breton SN, Godoy-Rivera D, Pinsonneault MH, van Saders J. 2023. Magnetic activity evolution of solar-like stars. I. Sph–age relation derived from Kepler observations. The Astrophysical Journal. 952(2), 131.","ama":"Mathur S, Claytor ZR, Santos ÂRG, et al. Magnetic activity evolution of solar-like stars. I. Sph–age relation derived from Kepler observations. <i>The Astrophysical Journal</i>. 2023;952(2). doi:<a href=\"https://doi.org/10.3847/1538-4357/acd118\">10.3847/1538-4357/acd118</a>","chicago":"Mathur, Savita, Zachary R. Claytor, Ângela R. G. Santos, Rafael A. García, Louis Amard, Lisa Annabelle Bugnet, Enrico Corsaro, et al. “Magnetic Activity Evolution of Solar-like Stars. I. Sph–Age Relation Derived from Kepler Observations.” <i>The Astrophysical Journal</i>. American Astronomical Society, 2023. <a href=\"https://doi.org/10.3847/1538-4357/acd118\">https://doi.org/10.3847/1538-4357/acd118</a>.","apa":"Mathur, S., Claytor, Z. R., Santos, Â. R. G., García, R. A., Amard, L., Bugnet, L. A., … van Saders, J. (2023). Magnetic activity evolution of solar-like stars. I. Sph–age relation derived from Kepler observations. <i>The Astrophysical Journal</i>. American Astronomical Society. <a href=\"https://doi.org/10.3847/1538-4357/acd118\">https://doi.org/10.3847/1538-4357/acd118</a>","mla":"Mathur, Savita, et al. “Magnetic Activity Evolution of Solar-like Stars. I. Sph–Age Relation Derived from Kepler Observations.” <i>The Astrophysical Journal</i>, vol. 952, no. 2, 131, American Astronomical Society, 2023, doi:<a href=\"https://doi.org/10.3847/1538-4357/acd118\">10.3847/1538-4357/acd118</a>."},"type":"journal_article","file_date_updated":"2023-08-02T07:42:26Z","abstract":[{"text":"The ages of solar-like stars have been at the center of many studies such as exoplanet characterization or Galactic-archeology. While ages are usually computed from stellar evolution models, relations linking ages to other stellar properties, such as rotation and magnetic activity, have been investigated. With the large catalog of 55,232 rotation periods, Prot, and photometric magnetic activity index, Sph from Kepler data, we have the opportunity to look for such magneto-gyro-chronology relations. Stellar ages are obtained with two stellar evolution codes that include treatment of angular momentum evolution, hence using Prot as input in addition to classical atmospheric parameters. We explore two different ways of predicting stellar ages on three subsamples with spectroscopic observations: solar analogs, late-F and G dwarfs, and K dwarfs. We first perform a Bayesian analysis to derive relations between Sph and ages between 1 and 5 Gyr, and other stellar properties. For late-F and G dwarfs, and K dwarfs, the multivariate regression favors the model with Prot and Sph with median differences of 0.1% and 0.2%, respectively. We also apply Machine Learning techniques with a Random Forest algorithm to predict ages up to 14 Gyr with the same set of input parameters. For late-F, G and K dwarfs together, predicted ages are on average within 5.3% of the model ages and improve to 3.1% when including Prot. These are very promising results for a quick age estimation for solar-like stars with photometric observations, especially with current and future space missions.","lang":"eng"}],"_id":"13443","quality_controlled":"1","publication_status":"published"},{"article_number":"2307.03237","month":"07","date_published":"2023-07-06T00:00:00Z","title":"Asteroseismology with the Roman galactic bulge time-domain survey","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Daniel","last_name":"Huber","full_name":"Huber, Daniel"},{"full_name":"Pinsonneault, Marc","last_name":"Pinsonneault","first_name":"Marc"},{"full_name":"Beck, Paul","last_name":"Beck","first_name":"Paul"},{"first_name":"Timothy R.","last_name":"Bedding","full_name":"Bedding, Timothy R."},{"full_name":"Joss Bland-Hawthorn, Joss Bland-Hawthorn","last_name":"Joss Bland-Hawthorn","first_name":"Joss Bland-Hawthorn"},{"full_name":"Breton, Sylvain N.","last_name":"Breton","first_name":"Sylvain N."},{"first_name":"Lisa Annabelle","id":"d9edb345-f866-11ec-9b37-d119b5234501","last_name":"Bugnet","orcid":"0000-0003-0142-4000","full_name":"Bugnet, Lisa Annabelle"},{"last_name":"Chaplin","first_name":"William J.","full_name":"Chaplin, William J."},{"first_name":"Rafael A.","last_name":"Garcia","full_name":"Garcia, Rafael A."},{"last_name":"Grunblatt","first_name":"Samuel K.","full_name":"Grunblatt, Samuel K."},{"first_name":"Joyce A.","last_name":"Guzik","full_name":"Guzik, Joyce A."},{"last_name":"Hekker","first_name":"Saskia","full_name":"Hekker, Saskia"},{"full_name":"Kawaler, Steven D.","last_name":"Kawaler","first_name":"Steven D."},{"full_name":"Mathis, Stephane","last_name":"Mathis","first_name":"Stephane"},{"last_name":"Mathur","first_name":"Savita","full_name":"Mathur, Savita"},{"last_name":"Metcalfe","first_name":"Travis","full_name":"Metcalfe, Travis"},{"last_name":"Mosser","first_name":"Benoit","full_name":"Mosser, Benoit"},{"last_name":"Ness","first_name":"Melissa K.","full_name":"Ness, Melissa K."},{"last_name":"Piro","first_name":"Anthony L.","full_name":"Piro, Anthony L."},{"last_name":"Serenelli","first_name":"Aldo","full_name":"Serenelli, Aldo"},{"full_name":"Sharma, Sanjib","last_name":"Sharma","first_name":"Sanjib"},{"full_name":"Soderblom, David R.","first_name":"David R.","last_name":"Soderblom"},{"full_name":"Stassun, Keivan G.","first_name":"Keivan G.","last_name":"Stassun"},{"last_name":"Stello","first_name":"Dennis","full_name":"Stello, Dennis"},{"first_name":"Jamie","last_name":"Tayar","full_name":"Tayar, Jamie"},{"first_name":"Gerard T. van","last_name":"Belle","full_name":"Belle, Gerard T. van"},{"first_name":"Joel C.","last_name":"Zinn","full_name":"Zinn, Joel C."}],"date_updated":"2023-08-02T07:36:00Z","department":[{"_id":"LiBu"}],"article_processing_charge":"No","external_id":{"arxiv":["2307.03237"]},"year":"2023","language":[{"iso":"eng"}],"type":"preprint","arxiv":1,"abstract":[{"lang":"eng","text":"Asteroseismology has transformed stellar astrophysics. Red giant asteroseismology is a prime example, with oscillation periods and amplitudes that are readily detectable with time-domain space-based telescopes. These oscillations can be used to infer masses, ages and radii for large numbers of stars, providing unique constraints on stellar populations in our galaxy. The cadence, duration, and spatial resolution of the Roman galactic bulge time-domain survey (GBTDS) are well-suited for asteroseismology and will probe an important population not studied by prior missions. We identify photometric precision as a key requirement for realizing the potential of asteroseismology with Roman. A precision of 1 mmag per 15-min cadence or better for saturated stars will enable detections of the populous red clump star population in the Galactic bulge. If the survey efficiency is better than expected, we argue for repeat observations of the same fields to improve photometric precision, or covering additional fields to expand the stellar population reach if the photometric precision for saturated stars is better than 1 mmag. Asteroseismology is relatively insensitive to the timing of the observations during the mission, and the prime red clump targets can be observed in a single 70 day campaign in any given field. Complementary stellar characterization, particularly astrometry tied to the Gaia system, will also dramatically expand the diagnostic power of asteroseismology. We also highlight synergies to Roman GBTDS exoplanet science using transits and microlensing."}],"citation":{"chicago":"Huber, Daniel, Marc Pinsonneault, Paul Beck, Timothy R. Bedding, Joss Bland-Hawthorn Joss Bland-Hawthorn, Sylvain N. Breton, Lisa Annabelle Bugnet, et al. “Asteroseismology with the Roman Galactic Bulge Time-Domain Survey.” <i>ArXiv</i>, n.d. <a href=\"https://doi.org/10.48550/arXiv.2307.03237\">https://doi.org/10.48550/arXiv.2307.03237</a>.","ama":"Huber D, Pinsonneault M, Beck P, et al. Asteroseismology with the Roman galactic bulge time-domain survey. <i>arXiv</i>. doi:<a href=\"https://doi.org/10.48550/arXiv.2307.03237\">10.48550/arXiv.2307.03237</a>","short":"D. Huber, M. Pinsonneault, P. Beck, T.R. Bedding, J.B.-H. Joss Bland-Hawthorn, S.N. Breton, L.A. Bugnet, W.J. Chaplin, R.A. Garcia, S.K. Grunblatt, J.A. Guzik, S. Hekker, S.D. Kawaler, S. Mathis, S. Mathur, T. Metcalfe, B. Mosser, M.K. Ness, A.L. Piro, A. Serenelli, S. Sharma, D.R. Soderblom, K.G. Stassun, D. Stello, J. Tayar, G.T. van Belle, J.C. Zinn, ArXiv (n.d.).","ieee":"D. Huber <i>et al.</i>, “Asteroseismology with the Roman galactic bulge time-domain survey,” <i>arXiv</i>. .","ista":"Huber D, Pinsonneault M, Beck P, Bedding TR, Joss Bland-Hawthorn JB-H, Breton SN, Bugnet LA, Chaplin WJ, Garcia RA, Grunblatt SK, Guzik JA, Hekker S, Kawaler SD, Mathis S, Mathur S, Metcalfe T, Mosser B, Ness MK, Piro AL, Serenelli A, Sharma S, Soderblom DR, Stassun KG, Stello D, Tayar J, Belle GT van, Zinn JC. Asteroseismology with the Roman galactic bulge time-domain survey. arXiv, 2307.03237.","mla":"Huber, Daniel, et al. “Asteroseismology with the Roman Galactic Bulge Time-Domain Survey.” <i>ArXiv</i>, 2307.03237, doi:<a href=\"https://doi.org/10.48550/arXiv.2307.03237\">10.48550/arXiv.2307.03237</a>.","apa":"Huber, D., Pinsonneault, M., Beck, P., Bedding, T. R., Joss Bland-Hawthorn, J. B.-H., Breton, S. N., … Zinn, J. C. (n.d.). Asteroseismology with the Roman galactic bulge time-domain survey. <i>arXiv</i>. <a href=\"https://doi.org/10.48550/arXiv.2307.03237\">https://doi.org/10.48550/arXiv.2307.03237</a>"},"status":"public","day":"06","date_created":"2023-08-02T07:30:43Z","_id":"13447","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2307.03237","open_access":"1"}],"doi":"10.48550/arXiv.2307.03237","publication_status":"submitted","publication":"arXiv","oa_version":"Preprint"},{"publication_status":"published","project":[{"call_identifier":"H2020","grant_number":"850899","name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control","_id":"23841C26-32DE-11EA-91FC-C7463DDC885E"}],"file_date_updated":"2023-08-07T09:48:08Z","type":"journal_article","scopus_import":"1","abstract":[{"text":"The many-body localization (MBL) proximity effect is an intriguing phenomenon where a thermal bath localizes due to the interaction with a disordered system. The interplay of thermal and nonergodic behavior in these systems gives rise to a rich phase diagram, whose exploration is an active field of research. In this paper, we study a bosonic Hubbard model featuring two particle species representing the bath and the disordered system. Using state-of-the-art numerical techniques, we investigate the dynamics of the model in different regimes, based on which we obtain a tentative phase diagram as a function of coupling strength and bath size. When the bath is composed of a single particle, we observe clear signatures of a transition from an MBL proximity effect to a delocalized phase. Increasing the bath size, however, its thermalizing effect becomes stronger and eventually the whole system delocalizes in the range of moderate interaction strengths studied. In this regime, we characterize particle transport, revealing diffusive behavior of the originally localized bosons.","lang":"eng"}],"arxiv":1,"publication_identifier":{"eissn":["2469-9969"],"issn":["2469-9950"]},"citation":{"chicago":"Brighi, Pietro, Marko Ljubotina, Dmitry A. Abanin, and Maksym Serbyn. “Many-Body Localization Proximity Effect in a Two-Species Bosonic Hubbard Model.” <i>Physical Review B</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/physrevb.108.054201\">https://doi.org/10.1103/physrevb.108.054201</a>.","ama":"Brighi P, Ljubotina M, Abanin DA, Serbyn M. Many-body localization proximity effect in a two-species bosonic Hubbard model. <i>Physical Review B</i>. 2023;108(5). doi:<a href=\"https://doi.org/10.1103/physrevb.108.054201\">10.1103/physrevb.108.054201</a>","short":"P. Brighi, M. Ljubotina, D.A. Abanin, M. Serbyn, Physical Review B 108 (2023).","ieee":"P. Brighi, M. Ljubotina, D. A. Abanin, and M. Serbyn, “Many-body localization proximity effect in a two-species bosonic Hubbard model,” <i>Physical Review B</i>, vol. 108, no. 5. American Physical Society, 2023.","ista":"Brighi P, Ljubotina M, Abanin DA, Serbyn M. 2023. Many-body localization proximity effect in a two-species bosonic Hubbard model. Physical Review B. 108(5), 054201.","mla":"Brighi, Pietro, et al. “Many-Body Localization Proximity Effect in a Two-Species Bosonic Hubbard Model.” <i>Physical Review B</i>, vol. 108, no. 5, 054201, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/physrevb.108.054201\">10.1103/physrevb.108.054201</a>.","apa":"Brighi, P., Ljubotina, M., Abanin, D. A., &#38; Serbyn, M. (2023). Many-body localization proximity effect in a two-species bosonic Hubbard model. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevb.108.054201\">https://doi.org/10.1103/physrevb.108.054201</a>"},"quality_controlled":"1","_id":"13963","department":[{"_id":"MaSe"}],"article_processing_charge":"Yes (in subscription journal)","article_type":"original","language":[{"iso":"eng"}],"publisher":"American Physical Society","has_accepted_license":"1","file":[{"success":1,"file_name":"2023_PhysRevB_Brighi.pdf","date_updated":"2023-08-07T09:48:08Z","date_created":"2023-08-07T09:48:08Z","content_type":"application/pdf","file_id":"13981","file_size":3051398,"creator":"dernst","access_level":"open_access","checksum":"f763000339b5fd543c14377109920690","relation":"main_file"}],"author":[{"first_name":"Pietro","id":"4115AF5C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7969-2729","last_name":"Brighi","full_name":"Brighi, Pietro"},{"last_name":"Ljubotina","first_name":"Marko","id":"F75EE9BE-5C90-11EA-905D-16643DDC885E","full_name":"Ljubotina, Marko"},{"full_name":"Abanin, Dmitry A.","last_name":"Abanin","first_name":"Dmitry A."},{"last_name":"Serbyn","orcid":"0000-0002-2399-5827","first_name":"Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","full_name":"Serbyn, Maksym"}],"title":"Many-body localization proximity effect in a two-species bosonic Hubbard model","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1103/physrevb.108.054201","publication":"Physical Review B","ec_funded":1,"oa_version":"Published Version","volume":108,"status":"public","day":"01","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"date_created":"2023-08-05T18:25:22Z","ddc":["530"],"external_id":{"arxiv":["2303.16876"]},"year":"2023","acknowledgement":"We thank A. A. Michailidis and A. Mirlin for insightful discussions. P.B., M.L., and M.S. acknowledge support by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant Agreement No. 850899). D.A. was\r\nsupported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant Agreement No. 864597) and by the Swiss National Science Foundation. P.B., M.L., and M.S. acknowledge PRACE for awarding us access to Joliot-Curie at GENCI@CEA, France, where the TEBD simulations were performed. The TEBD simulations were performed using the ITensor library [60].","article_number":"054201","intvolume":"       108","month":"08","date_published":"2023-08-01T00:00:00Z","issue":"5","oa":1,"date_updated":"2023-08-07T09:51:39Z"},{"date_created":"2023-08-06T22:01:10Z","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ddc":["570"],"day":"01","status":"public","pmid":1,"volume":81,"isi":1,"oa_version":"Published Version","doi":"10.1016/j.gde.2023.102087","publication":"Current Opinion in Genetics and Development","date_updated":"2023-12-13T12:05:31Z","issue":"8","oa":1,"month":"08","intvolume":"        81","date_published":"2023-08-01T00:00:00Z","article_number":"102087","year":"2023","external_id":{"isi":["001047020200001"],"pmid":["37441873"]},"_id":"13965","quality_controlled":"1","publication_identifier":{"eissn":["1879-0380"],"issn":["0959-437X"]},"citation":{"apa":"Hollwey, E., Briffa, A., Howard, M., &#38; Zilberman, D. (2023). Concepts, mechanisms and implications of long-term epigenetic inheritance. <i>Current Opinion in Genetics and Development</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.gde.2023.102087\">https://doi.org/10.1016/j.gde.2023.102087</a>","mla":"Hollwey, Elizabeth, et al. “Concepts, Mechanisms and Implications of Long-Term Epigenetic Inheritance.” <i>Current Opinion in Genetics and Development</i>, vol. 81, no. 8, 102087, Elsevier, 2023, doi:<a href=\"https://doi.org/10.1016/j.gde.2023.102087\">10.1016/j.gde.2023.102087</a>.","ama":"Hollwey E, Briffa A, Howard M, Zilberman D. Concepts, mechanisms and implications of long-term epigenetic inheritance. <i>Current Opinion in Genetics and Development</i>. 2023;81(8). doi:<a href=\"https://doi.org/10.1016/j.gde.2023.102087\">10.1016/j.gde.2023.102087</a>","short":"E. Hollwey, A. Briffa, M. Howard, D. Zilberman, Current Opinion in Genetics and Development 81 (2023).","ieee":"E. Hollwey, A. Briffa, M. Howard, and D. Zilberman, “Concepts, mechanisms and implications of long-term epigenetic inheritance,” <i>Current Opinion in Genetics and Development</i>, vol. 81, no. 8. Elsevier, 2023.","ista":"Hollwey E, Briffa A, Howard M, Zilberman D. 2023. Concepts, mechanisms and implications of long-term epigenetic inheritance. Current Opinion in Genetics and Development. 81(8), 102087.","chicago":"Hollwey, Elizabeth, Amy Briffa, Martin Howard, and Daniel Zilberman. “Concepts, Mechanisms and Implications of Long-Term Epigenetic Inheritance.” <i>Current Opinion in Genetics and Development</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.gde.2023.102087\">https://doi.org/10.1016/j.gde.2023.102087</a>."},"file_date_updated":"2023-08-07T08:32:26Z","type":"journal_article","abstract":[{"text":"Many modes and mechanisms of epigenetic inheritance have been elucidated in eukaryotes. Most of them are relatively short-term, generally not exceeding one or a few organismal generations. However, emerging evidence indicates that one mechanism, cytosine DNA methylation, can mediate epigenetic inheritance over much longer timescales, which are mostly or completely inaccessible in the laboratory. Here we discuss the evidence for, and mechanisms and implications of, such long-term epigenetic inheritance. We argue that compelling evidence supports the long-term epigenetic inheritance of gene body methylation, at least in the model angiosperm Arabidopsis thaliana, and that variation in such methylation can therefore serve as an epigenetic basis for phenotypic variation in natural populations.","lang":"eng"}],"scopus_import":"1","file":[{"checksum":"a294cd9506b80ed6ef218ef44ed32765","relation":"main_file","access_level":"open_access","file_size":2568632,"creator":"dernst","content_type":"application/pdf","file_id":"13980","date_created":"2023-08-07T08:32:26Z","date_updated":"2023-08-07T08:32:26Z","file_name":"2023_CurrentOpinionGenetics_Hollwey.pdf","success":1}],"title":"Concepts, mechanisms and implications of long-term epigenetic inheritance","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"full_name":"Hollwey, Elizabeth","last_name":"Hollwey","first_name":"Elizabeth","id":"b8c4f54b-e484-11eb-8fdc-a54df64ef6dd"},{"last_name":"Briffa","first_name":"Amy","full_name":"Briffa, Amy"},{"full_name":"Howard, Martin","first_name":"Martin","last_name":"Howard"},{"id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","first_name":"Daniel","orcid":"0000-0002-0123-8649","last_name":"Zilberman","full_name":"Zilberman, Daniel"}],"has_accepted_license":"1","publisher":"Elsevier","language":[{"iso":"eng"}],"article_type":"original","article_processing_charge":"Yes (via OA deal)","department":[{"_id":"DaZi"}]},{"publication_status":"published","project":[{"call_identifier":"FWF","grant_number":"M02641","name":"A path-integral approach to composite impurities","_id":"26986C82-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","grant_number":"M02751","name":"Algebro-Geometric Applications of Factorization Homology","_id":"26B96266-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","grant_number":"P29902","name":"Quantum rotations in the presence of a many-body environment","_id":"26031614-B435-11E9-9278-68D0E5697425"},{"grant_number":"801770","call_identifier":"H2020","name":"Angulon: physics and applications of a new quasiparticle","_id":"2688CF98-B435-11E9-9278-68D0E5697425"}],"type":"journal_article","abstract":[{"text":"We present a low-scaling diagrammatic Monte Carlo approach to molecular correlation energies. Using combinatorial graph theory to encode many-body Hugenholtz diagrams, we sample the Møller-Plesset (MPn) perturbation series, obtaining accurate correlation energies up to n=5, with quadratic scaling in the number of basis functions. Our technique reduces the computational complexity of the molecular many-fermion correlation problem, opening up the possibility of low-scaling, accurate stochastic computations for a wide class of many-body systems described by Hugenholtz diagrams.","lang":"eng"}],"arxiv":1,"scopus_import":"1","publication_identifier":{"eissn":["2469-9969"],"issn":["2469-9950"]},"citation":{"chicago":"Bighin, Giacomo, Quoc P Ho, Mikhail Lemeshko, and T. V. Tscherbul. “Diagrammatic Monte Carlo for Electronic Correlation in Molecules: High-Order Many-Body Perturbation Theory with Low Scaling.” <i>Physical Review B</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/PhysRevB.108.045115\">https://doi.org/10.1103/PhysRevB.108.045115</a>.","ama":"Bighin G, Ho QP, Lemeshko M, Tscherbul TV. Diagrammatic Monte Carlo for electronic correlation in molecules: High-order many-body perturbation theory with low scaling. <i>Physical Review B</i>. 2023;108(4). doi:<a href=\"https://doi.org/10.1103/PhysRevB.108.045115\">10.1103/PhysRevB.108.045115</a>","ieee":"G. Bighin, Q. P. Ho, M. Lemeshko, and T. V. Tscherbul, “Diagrammatic Monte Carlo for electronic correlation in molecules: High-order many-body perturbation theory with low scaling,” <i>Physical Review B</i>, vol. 108, no. 4. American Physical Society, 2023.","ista":"Bighin G, Ho QP, Lemeshko M, Tscherbul TV. 2023. Diagrammatic Monte Carlo for electronic correlation in molecules: High-order many-body perturbation theory with low scaling. Physical Review B. 108(4), 045115.","short":"G. Bighin, Q.P. Ho, M. Lemeshko, T.V. Tscherbul, Physical Review B 108 (2023).","mla":"Bighin, Giacomo, et al. “Diagrammatic Monte Carlo for Electronic Correlation in Molecules: High-Order Many-Body Perturbation Theory with Low Scaling.” <i>Physical Review B</i>, vol. 108, no. 4, 045115, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/PhysRevB.108.045115\">10.1103/PhysRevB.108.045115</a>.","apa":"Bighin, G., Ho, Q. P., Lemeshko, M., &#38; Tscherbul, T. V. (2023). Diagrammatic Monte Carlo for electronic correlation in molecules: High-order many-body perturbation theory with low scaling. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.108.045115\">https://doi.org/10.1103/PhysRevB.108.045115</a>"},"quality_controlled":"1","_id":"13966","department":[{"_id":"MiLe"},{"_id":"TaHa"}],"article_processing_charge":"No","article_type":"original","language":[{"iso":"eng"}],"publisher":"American Physical Society","title":"Diagrammatic Monte Carlo for electronic correlation in molecules: High-order many-body perturbation theory with low scaling","author":[{"full_name":"Bighin, Giacomo","first_name":"Giacomo","id":"4CA96FD4-F248-11E8-B48F-1D18A9856A87","last_name":"Bighin","orcid":"0000-0001-8823-9777"},{"last_name":"Ho","orcid":"0000-0001-6889-1418","id":"3DD82E3C-F248-11E8-B48F-1D18A9856A87","first_name":"Quoc P","full_name":"Ho, Quoc P"},{"full_name":"Lemeshko, Mikhail","orcid":"0000-0002-6990-7802","last_name":"Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","first_name":"Mikhail"},{"last_name":"Tscherbul","first_name":"T. V.","full_name":"Tscherbul, T. V."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1103/PhysRevB.108.045115","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2203.12666"}],"publication":"Physical Review B","oa_version":"Preprint","ec_funded":1,"volume":108,"status":"public","day":"15","date_created":"2023-08-06T22:01:10Z","external_id":{"arxiv":["2203.12666"]},"year":"2023","article_number":"045115","acknowledgement":"We acknowledge stimulating discussions with Sergey Varganov, Artur Izmaylov, Jacek Kłos, Piotr Żuchowski, Dominika Zgid, Nikolay Prokof'ev, Boris Svistunov, Robert Parrish, and Andreas Heßelmann. G.B. and Q.P.H. acknowledge support from the Austrian Science Fund (FWF) under Projects No. M2641-N27 and No. M2751. M.L. acknowledges support by the FWF under Project No. P29902-N27, and by the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). T.V.T. was supported by the NSF CAREER award No. PHY-2045681. This work is supported by the German Research Foundation (DFG) under Germany's Excellence Strategy EXC2181/1-390900948 (the Heidelberg STRUCTURES Excellence Cluster). The authors acknowledge support by the state of Baden-Württemberg through bwHPC.","month":"07","intvolume":"       108","date_published":"2023-07-15T00:00:00Z","issue":"4","oa":1,"date_updated":"2024-08-07T07:16:52Z"},{"external_id":{"isi":["001036707700042"],"arxiv":["2304.09930"]},"conference":{"location":"Boston, MA, United States","name":"LICS: Symposium on Logic in Computer Science","end_date":"2023-06-29","start_date":"2023-06-26"},"year":"2023","date_published":"2023-07-01T00:00:00Z","month":"07","intvolume":"      2023","acknowledgement":"This research was funded in part by DFG projects 383882557 “SUV” and 427755713 “GOPro”.","date_updated":"2023-12-13T12:06:10Z","oa":1,"publication":"38th Annual ACM/IEEE Symposium on Logic in Computer Science","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2304.09930"}],"doi":"10.1109/LICS56636.2023.10175771","oa_version":"Preprint","isi":1,"volume":2023,"date_created":"2023-08-06T22:01:10Z","day":"01","status":"public","article_processing_charge":"No","department":[{"_id":"KrCh"}],"language":[{"iso":"eng"}],"publisher":"Institute of Electrical and Electronics Engineers","title":"Stopping criteria for value iteration on stochastic games with quantitative objectives","author":[{"full_name":"Kretinsky, Jan","last_name":"Kretinsky","orcid":"0000-0002-8122-2881","id":"44CEF464-F248-11E8-B48F-1D18A9856A87","first_name":"Jan"},{"full_name":"Meggendorfer, Tobias","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","first_name":"Tobias","last_name":"Meggendorfer","orcid":"0000-0002-1712-2165"},{"last_name":"Weininger","id":"02ab0197-cc70-11ed-ab61-918e71f56881","first_name":"Maximilian","full_name":"Weininger, Maximilian"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","citation":{"ista":"Kretinsky J, Meggendorfer T, Weininger M. 2023. Stopping criteria for value iteration on stochastic games with quantitative objectives. 38th Annual ACM/IEEE Symposium on Logic in Computer Science. LICS: Symposium on Logic in Computer Science vol. 2023.","ieee":"J. Kretinsky, T. Meggendorfer, and M. Weininger, “Stopping criteria for value iteration on stochastic games with quantitative objectives,” in <i>38th Annual ACM/IEEE Symposium on Logic in Computer Science</i>, Boston, MA, United States, 2023, vol. 2023.","short":"J. Kretinsky, T. Meggendorfer, M. Weininger, in:, 38th Annual ACM/IEEE Symposium on Logic in Computer Science, Institute of Electrical and Electronics Engineers, 2023.","ama":"Kretinsky J, Meggendorfer T, Weininger M. Stopping criteria for value iteration on stochastic games with quantitative objectives. In: <i>38th Annual ACM/IEEE Symposium on Logic in Computer Science</i>. Vol 2023. Institute of Electrical and Electronics Engineers; 2023. doi:<a href=\"https://doi.org/10.1109/LICS56636.2023.10175771\">10.1109/LICS56636.2023.10175771</a>","chicago":"Kretinsky, Jan, Tobias Meggendorfer, and Maximilian Weininger. “Stopping Criteria for Value Iteration on Stochastic Games with Quantitative Objectives.” In <i>38th Annual ACM/IEEE Symposium on Logic in Computer Science</i>, Vol. 2023. Institute of Electrical and Electronics Engineers, 2023. <a href=\"https://doi.org/10.1109/LICS56636.2023.10175771\">https://doi.org/10.1109/LICS56636.2023.10175771</a>.","apa":"Kretinsky, J., Meggendorfer, T., &#38; Weininger, M. (2023). Stopping criteria for value iteration on stochastic games with quantitative objectives. In <i>38th Annual ACM/IEEE Symposium on Logic in Computer Science</i> (Vol. 2023). Boston, MA, United States: Institute of Electrical and Electronics Engineers. <a href=\"https://doi.org/10.1109/LICS56636.2023.10175771\">https://doi.org/10.1109/LICS56636.2023.10175771</a>","mla":"Kretinsky, Jan, et al. “Stopping Criteria for Value Iteration on Stochastic Games with Quantitative Objectives.” <i>38th Annual ACM/IEEE Symposium on Logic in Computer Science</i>, vol. 2023, Institute of Electrical and Electronics Engineers, 2023, doi:<a href=\"https://doi.org/10.1109/LICS56636.2023.10175771\">10.1109/LICS56636.2023.10175771</a>."},"publication_identifier":{"isbn":["9798350335873"],"issn":["1043-6871"]},"scopus_import":"1","abstract":[{"text":"A classic solution technique for Markov decision processes (MDP) and stochastic games (SG) is value iteration (VI). Due to its good practical performance, this approximative approach is typically preferred over exact techniques, even though no practical bounds on the imprecision of the result could be given until recently. As a consequence, even the most used model checkers could return arbitrarily wrong results. Over the past decade, different works derived stopping criteria, indicating when the precision reaches the desired level, for various settings, in particular MDP with reachability, total reward, and mean payoff, and SG with reachability.In this paper, we provide the first stopping criteria for VI on SG with total reward and mean payoff, yielding the first anytime algorithms in these settings. To this end, we provide the solution in two flavours: First through a reduction to the MDP case and second directly on SG. The former is simpler and automatically utilizes any advances on MDP. The latter allows for more local computations, heading towards better practical efficiency.Our solution unifies the previously mentioned approaches for MDP and SG and their underlying ideas. To achieve this, we isolate objective-specific subroutines as well as identify objective-independent concepts. These structural concepts, while surprisingly simple, form the very essence of the unified solution.","lang":"eng"}],"arxiv":1,"type":"conference","_id":"13967","quality_controlled":"1"},{"date_updated":"2023-12-13T12:04:10Z","oa":1,"acknowledged_ssus":[{"_id":"EM-Fac"}],"intvolume":"        11","month":"07","date_published":"2023-07-14T00:00:00Z","acknowledgement":"This project has received funding from the European Union’s Horizon 2020 Research and Innovation Programme under the Marie Skłodowska-Curie grant agreement No. 813863–BORGES. We further thank the office of the Federal Government of Lower Austria, K3-Group–Culture, Science and Education, for their financial support as part of the project “Responsive Wound Dressing”. We gratefully acknowledge the financial support from the Austrian Research Promotion Agency (FFG; 888067).\r\nWe thank the Electron Microscopy Facility at IST Austria for their support with sputter coating the FO tips and Bernhard Pichler from AIT for software development to facilitate data evaluation.","article_number":"1202132","year":"2023","external_id":{"isi":["001038636400001"]},"date_created":"2023-08-06T22:01:11Z","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ddc":["530"],"day":"14","status":"public","volume":11,"isi":1,"oa_version":"Published Version","doi":"10.3389/fphy.2023.1202132","publication":"Frontiers in Physics","file":[{"date_created":"2023-08-07T07:48:11Z","date_updated":"2023-08-07T07:48:11Z","success":1,"file_name":"2023_FrontiersPhysics_Hasler.pdf","checksum":"fb36dda665e57bab006a000bf0faacd5","relation":"main_file","access_level":"open_access","file_id":"13978","content_type":"application/pdf","creator":"dernst","file_size":2421758}],"author":[{"first_name":"Roger","last_name":"Hasler","full_name":"Hasler, Roger"},{"full_name":"Steger-Polt, Marie Helene","first_name":"Marie Helene","last_name":"Steger-Polt"},{"full_name":"Reiner-Rozman, Ciril","first_name":"Ciril","last_name":"Reiner-Rozman"},{"last_name":"Fossati","first_name":"Stefan","full_name":"Fossati, Stefan"},{"last_name":"Lee","orcid":"0000-0002-6962-8598","first_name":"Seungho","id":"BB243B88-D767-11E9-B658-BC13E6697425","full_name":"Lee, Seungho"},{"full_name":"Aspermair, Patrik","last_name":"Aspermair","first_name":"Patrik"},{"full_name":"Kleber, Christoph","first_name":"Christoph","last_name":"Kleber"},{"full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","orcid":"0000-0001-5013-2843","last_name":"Ibáñez"},{"full_name":"Dostalek, Jakub","first_name":"Jakub","last_name":"Dostalek"},{"last_name":"Knoll","first_name":"Wolfgang","full_name":"Knoll, Wolfgang"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing","has_accepted_license":"1","publisher":"Frontiers","language":[{"iso":"eng"}],"article_type":"original","article_processing_charge":"Yes","department":[{"_id":"MaIb"}],"_id":"13968","quality_controlled":"1","citation":{"apa":"Hasler, R., Steger-Polt, M. H., Reiner-Rozman, C., Fossati, S., Lee, S., Aspermair, P., … Knoll, W. (2023). Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing. <i>Frontiers in Physics</i>. Frontiers. <a href=\"https://doi.org/10.3389/fphy.2023.1202132\">https://doi.org/10.3389/fphy.2023.1202132</a>","mla":"Hasler, Roger, et al. “Optical and Electronic Signal Stabilization of Plasmonic Fiber Optic Gate Electrodes: Towards Improved Real-Time Dual-Mode Biosensing.” <i>Frontiers in Physics</i>, vol. 11, 1202132, Frontiers, 2023, doi:<a href=\"https://doi.org/10.3389/fphy.2023.1202132\">10.3389/fphy.2023.1202132</a>.","ieee":"R. Hasler <i>et al.</i>, “Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing,” <i>Frontiers in Physics</i>, vol. 11. Frontiers, 2023.","short":"R. Hasler, M.H. Steger-Polt, C. Reiner-Rozman, S. Fossati, S. Lee, P. Aspermair, C. Kleber, M. Ibáñez, J. Dostalek, W. Knoll, Frontiers in Physics 11 (2023).","ista":"Hasler R, Steger-Polt MH, Reiner-Rozman C, Fossati S, Lee S, Aspermair P, Kleber C, Ibáñez M, Dostalek J, Knoll W. 2023. Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing. Frontiers in Physics. 11, 1202132.","ama":"Hasler R, Steger-Polt MH, Reiner-Rozman C, et al. Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing. <i>Frontiers in Physics</i>. 2023;11. doi:<a href=\"https://doi.org/10.3389/fphy.2023.1202132\">10.3389/fphy.2023.1202132</a>","chicago":"Hasler, Roger, Marie Helene Steger-Polt, Ciril Reiner-Rozman, Stefan Fossati, Seungho Lee, Patrik Aspermair, Christoph Kleber, Maria Ibáñez, Jakub Dostalek, and Wolfgang Knoll. “Optical and Electronic Signal Stabilization of Plasmonic Fiber Optic Gate Electrodes: Towards Improved Real-Time Dual-Mode Biosensing.” <i>Frontiers in Physics</i>. Frontiers, 2023. <a href=\"https://doi.org/10.3389/fphy.2023.1202132\">https://doi.org/10.3389/fphy.2023.1202132</a>."},"publication_identifier":{"eissn":["2296-424X"]},"file_date_updated":"2023-08-07T07:48:11Z","type":"journal_article","scopus_import":"1","abstract":[{"text":"The use of multimodal readout mechanisms next to label-free real-time monitoring of biomolecular interactions can provide valuable insight into surface-based reaction mechanisms. To this end, the combination of an electrolyte-gated field-effect transistor (EG-FET) with a fiber optic-coupled surface plasmon resonance (FO-SPR) probe serving as gate electrode has been investigated to deconvolute surface mass and charge density variations associated to surface reactions. However, applying an electrochemical potential on such gold-coated FO-SPR gate electrodes can induce gradual morphological changes of the thin gold film, leading to an irreversible blue-shift of the SPR wavelength and a substantial signal drift. We show that mild annealing leads to optical and electronic signal stabilization (20-fold lower signal drift than as-sputtered fiber optic gates) and improved overall analytical performance characteristics. The thermal treatment prevents morphological changes of the thin gold-film occurring during operation, hence providing reliable and stable data immediately upon gate voltage application. Thus, the readout output of both transducing principles, the optical FO-SPR and electronic EG-FET, stays constant throughout the whole sensing time-window and the long-term effect of thermal treatment is also improved, providing stable signals even after 1 year of storage. Annealing should therefore be considered a necessary modification for applying fiber optic gate electrodes in real-time multimodal investigations of surface reactions at the solid-liquid interface.","lang":"eng"}],"publication_status":"published"},{"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","grant_number":"754411"}],"publication_status":"published","publication_identifier":{"issn":["1526-1719"]},"citation":{"ama":"Arroyo Guevara AM, Felsner S. Approximating the bundled crossing number. <i>Journal of Graph Algorithms and Applications</i>. 2023;27(6):433-457. doi:<a href=\"https://doi.org/10.7155/jgaa.00629\">10.7155/jgaa.00629</a>","short":"A.M. Arroyo Guevara, S. Felsner, Journal of Graph Algorithms and Applications 27 (2023) 433–457.","ista":"Arroyo Guevara AM, Felsner S. 2023. Approximating the bundled crossing number. Journal of Graph Algorithms and Applications. 27(6), 433–457.","ieee":"A. M. Arroyo Guevara and S. Felsner, “Approximating the bundled crossing number,” <i>Journal of Graph Algorithms and Applications</i>, vol. 27, no. 6. Brown University, pp. 433–457, 2023.","chicago":"Arroyo Guevara, Alan M, and Stefan Felsner. “Approximating the Bundled Crossing Number.” <i>Journal of Graph Algorithms and Applications</i>. Brown University, 2023. <a href=\"https://doi.org/10.7155/jgaa.00629\">https://doi.org/10.7155/jgaa.00629</a>.","apa":"Arroyo Guevara, A. M., &#38; Felsner, S. (2023). Approximating the bundled crossing number. <i>Journal of Graph Algorithms and Applications</i>. Brown University. <a href=\"https://doi.org/10.7155/jgaa.00629\">https://doi.org/10.7155/jgaa.00629</a>","mla":"Arroyo Guevara, Alan M., and Stefan Felsner. “Approximating the Bundled Crossing Number.” <i>Journal of Graph Algorithms and Applications</i>, vol. 27, no. 6, Brown University, 2023, pp. 433–57, doi:<a href=\"https://doi.org/10.7155/jgaa.00629\">10.7155/jgaa.00629</a>."},"scopus_import":"1","abstract":[{"lang":"eng","text":"Bundling crossings is a strategy which can enhance the readability\r\nof graph drawings. In this paper we consider good drawings, i.e., we require that\r\nany two edges have at most one common point which can be a common vertex or a\r\ncrossing. Our main result is that there is a polynomial-time algorithm to compute an\r\n8-approximation of the bundled crossing number of a good drawing with no toothed\r\nhole. In general the number of toothed holes has to be added to the 8-approximation.\r\nIn the special case of circular drawings the approximation factor is 8, this improves\r\nupon the 10-approximation of Fink et al. [14]. Our approach also works with the same\r\napproximation factor for families of pseudosegments, i.e., curves intersecting at most\r\nonce. We also show how to compute a 9/2-approximation when the intersection graph of\r\nthe pseudosegments is bipartite and has no toothed hole."}],"arxiv":1,"file_date_updated":"2023-08-07T08:00:48Z","type":"journal_article","_id":"13969","quality_controlled":"1","article_processing_charge":"Yes","department":[{"_id":"UlWa"}],"language":[{"iso":"eng"}],"article_type":"original","has_accepted_license":"1","publisher":"Brown University","title":"Approximating the bundled crossing number","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"full_name":"Arroyo Guevara, Alan M","id":"3207FDC6-F248-11E8-B48F-1D18A9856A87","first_name":"Alan M","last_name":"Arroyo Guevara","orcid":"0000-0003-2401-8670"},{"full_name":"Felsner, Stefan","last_name":"Felsner","first_name":"Stefan"}],"file":[{"checksum":"9c30d2b8e324cc1c904f2aeec92013a3","relation":"main_file","access_level":"open_access","file_id":"13979","content_type":"application/pdf","file_size":865774,"creator":"dernst","date_updated":"2023-08-07T08:00:48Z","date_created":"2023-08-07T08:00:48Z","success":1,"file_name":"2023_JourGraphAlgorithms_Arroyo.pdf"}],"publication":"Journal of Graph Algorithms and Applications","doi":"10.7155/jgaa.00629","related_material":{"record":[{"relation":"earlier_version","status":"public","id":"11185"}]},"oa_version":"Published Version","ec_funded":1,"volume":27,"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ddc":["510"],"date_created":"2023-08-06T22:01:11Z","status":"public","day":"01","page":"433-457","external_id":{"arxiv":["2109.14892"]},"year":"2023","date_published":"2023-07-01T00:00:00Z","intvolume":"        27","month":"07","acknowledgement":"This work was initiated during the Workshop on Geometric Graphs in November 2019 in Strobl, Austria. We would like to thank Oswin Aichholzer, Fabian Klute, Man-Kwun Chiu, Martin Balko, Pavel Valtr for their avid discussions during the workshop. The first author has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sk lodowska-Curie grant agreement No 754411. The second author has been supported by the German Research Foundation DFG Project FE 340/12-1. An extended abstract of this paper has been published in the proceedings of WALCOM 2022 in the Springer LNCS series, vol. 13174, pages 383–395.","date_updated":"2023-09-25T10:56:10Z","oa":1,"issue":"6"},{"publisher":"Organic Syntheses","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Madani","first_name":"Amiera","full_name":"Madani, Amiera"},{"full_name":"Sletten, Eric T.","first_name":"Eric T.","last_name":"Sletten"},{"last_name":"Cavedon","first_name":"Cristian","full_name":"Cavedon, Cristian"},{"full_name":"Seeberger, Peter H.","last_name":"Seeberger","first_name":"Peter H."},{"full_name":"Pieber, Bartholomäus","id":"93e5e5b2-0da6-11ed-8a41-af589a024726","first_name":"Bartholomäus","last_name":"Pieber","orcid":"0000-0001-8689-388X"}],"title":"Visible-light-mediated oxidative debenzylation of 3-O-Benzyl-1,2:5,6-di-O-isopropylidene-α-D-glucofuranose","article_processing_charge":"No","department":[{"_id":"BaPi"}],"language":[{"iso":"eng"}],"article_type":"original","citation":{"ista":"Madani A, Sletten ET, Cavedon C, Seeberger PH, Pieber B. 2023. Visible-light-mediated oxidative debenzylation of 3-O-Benzyl-1,2:5,6-di-O-isopropylidene-α-D-glucofuranose. Organic Syntheses. 100, 271–286.","short":"A. Madani, E.T. Sletten, C. Cavedon, P.H. Seeberger, B. Pieber, Organic Syntheses 100 (2023) 271–286.","ieee":"A. Madani, E. T. Sletten, C. Cavedon, P. H. Seeberger, and B. Pieber, “Visible-light-mediated oxidative debenzylation of 3-O-Benzyl-1,2:5,6-di-O-isopropylidene-α-D-glucofuranose,” <i>Organic Syntheses</i>, vol. 100. Organic Syntheses, pp. 271–286, 2023.","ama":"Madani A, Sletten ET, Cavedon C, Seeberger PH, Pieber B. Visible-light-mediated oxidative debenzylation of 3-O-Benzyl-1,2:5,6-di-O-isopropylidene-α-D-glucofuranose. <i>Organic Syntheses</i>. 2023;100:271-286. doi:<a href=\"https://doi.org/10.15227/orgsyn.100.0271\">10.15227/orgsyn.100.0271</a>","chicago":"Madani, Amiera, Eric T. Sletten, Cristian Cavedon, Peter H. Seeberger, and Bartholomäus Pieber. “Visible-Light-Mediated Oxidative Debenzylation of 3-O-Benzyl-1,2:5,6-Di-O-Isopropylidene-α-D-Glucofuranose.” <i>Organic Syntheses</i>. Organic Syntheses, 2023. <a href=\"https://doi.org/10.15227/orgsyn.100.0271\">https://doi.org/10.15227/orgsyn.100.0271</a>.","apa":"Madani, A., Sletten, E. T., Cavedon, C., Seeberger, P. H., &#38; Pieber, B. (2023). Visible-light-mediated oxidative debenzylation of 3-O-Benzyl-1,2:5,6-di-O-isopropylidene-α-D-glucofuranose. <i>Organic Syntheses</i>. Organic Syntheses. <a href=\"https://doi.org/10.15227/orgsyn.100.0271\">https://doi.org/10.15227/orgsyn.100.0271</a>","mla":"Madani, Amiera, et al. “Visible-Light-Mediated Oxidative Debenzylation of 3-O-Benzyl-1,2:5,6-Di-O-Isopropylidene-α-D-Glucofuranose.” <i>Organic Syntheses</i>, vol. 100, Organic Syntheses, 2023, pp. 271–86, doi:<a href=\"https://doi.org/10.15227/orgsyn.100.0271\">10.15227/orgsyn.100.0271</a>."},"publication_identifier":{"issn":["0078-6209"],"eissn":["2333-3553"]},"scopus_import":"1","type":"journal_article","_id":"13970","quality_controlled":"1","publication_status":"published","date_published":"2023-07-01T00:00:00Z","intvolume":"       100","month":"07","date_updated":"2023-08-07T08:21:45Z","oa":1,"page":"271-286","year":"2023","volume":100,"date_created":"2023-08-06T22:01:11Z","day":"01","status":"public","publication":"Organic Syntheses","main_file_link":[{"open_access":"1","url":"https://doi.org/10.15227/orgsyn.100.0271"}],"doi":"10.15227/orgsyn.100.0271","oa_version":"Published Version"}]