[{"type":"journal_article","scopus_import":1,"citation":{"ieee":"J. Renkawitz and M. K. Sixt, “Formin’ a nuclear protection,” <i>Cell</i>, vol. 167, no. 6. Cell Press, pp. 1448–1449, 2016.","apa":"Renkawitz, J., &#38; Sixt, M. K. (2016). Formin’ a nuclear protection. <i>Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cell.2016.11.024\">https://doi.org/10.1016/j.cell.2016.11.024</a>","short":"J. Renkawitz, M.K. Sixt, Cell 167 (2016) 1448–1449.","mla":"Renkawitz, Jörg, and Michael K. Sixt. “Formin’ a Nuclear Protection.” <i>Cell</i>, vol. 167, no. 6, Cell Press, 2016, pp. 1448–49, doi:<a href=\"https://doi.org/10.1016/j.cell.2016.11.024\">10.1016/j.cell.2016.11.024</a>.","ista":"Renkawitz J, Sixt MK. 2016. Formin’ a nuclear protection. Cell. 167(6), 1448–1449.","chicago":"Renkawitz, Jörg, and Michael K Sixt. “Formin’ a Nuclear Protection.” <i>Cell</i>. Cell Press, 2016. <a href=\"https://doi.org/10.1016/j.cell.2016.11.024\">https://doi.org/10.1016/j.cell.2016.11.024</a>.","ama":"Renkawitz J, Sixt MK. Formin’ a nuclear protection. <i>Cell</i>. 2016;167(6):1448-1449. doi:<a href=\"https://doi.org/10.1016/j.cell.2016.11.024\">10.1016/j.cell.2016.11.024</a>"},"quality_controlled":"1","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","issue":"6","intvolume":"       167","volume":167,"abstract":[{"lang":"eng","text":"In this issue of Cell, Skau et al. show that the formin FMN2 organizes a perinuclear actin cytoskeleton that protects the nucleus and its genomic content of migrating cells squeezing through small spaces."}],"publication_status":"published","publist_id":"6149","language":[{"iso":"eng"}],"status":"public","_id":"1201","publisher":"Cell Press","date_created":"2018-12-11T11:50:41Z","day":"01","doi":"10.1016/j.cell.2016.11.024","publication":"Cell","oa_version":"None","page":"1448 - 1449","date_published":"2016-12-01T00:00:00Z","author":[{"full_name":"Renkawitz, Jörg","orcid":"0000-0003-2856-3369","last_name":"Renkawitz","id":"3F0587C8-F248-11E8-B48F-1D18A9856A87","first_name":"Jörg"},{"id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","first_name":"Michael K","orcid":"0000-0002-6620-9179","full_name":"Sixt, Michael K","last_name":"Sixt"}],"year":"2016","date_updated":"2021-01-12T06:49:03Z","title":"Formin’ a nuclear protection","department":[{"_id":"MiSi"}],"month":"12"},{"publist_id":"6147","publication_status":"published","has_accepted_license":"1","status":"public","language":[{"iso":"eng"}],"quality_controlled":"1","file":[{"access_level":"open_access","file_name":"2016_Elsevier_Milutinovic.pdf","file_size":1473211,"content_type":"application/pdf","date_updated":"2020-07-14T12:44:39Z","relation":"main_file","checksum":"8396d5bd95f9c4295857162f902afabf","creator":"kschuh","date_created":"2019-01-25T13:00:20Z","file_id":"5885"}],"type":"journal_article","citation":{"ama":"Milutinovic B, Peuß R, Ferro K, Kurtz J. Immune priming in arthropods: an update focusing on the red flour beetle. <i>Zoology </i>. 2016;119(4):254-261. doi:<a href=\"https://doi.org/10.1016/j.zool.2016.03.006\">10.1016/j.zool.2016.03.006</a>","chicago":"Milutinovic, Barbara, Robert Peuß, Kevin Ferro, and Joachim Kurtz. “Immune Priming in Arthropods: An Update Focusing on the Red Flour Beetle.” <i>Zoology </i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.zool.2016.03.006\">https://doi.org/10.1016/j.zool.2016.03.006</a>.","ista":"Milutinovic B, Peuß R, Ferro K, Kurtz J. 2016. Immune priming in arthropods: an update focusing on the red flour beetle. Zoology . 119(4), 254–261.","mla":"Milutinovic, Barbara, et al. “Immune Priming in Arthropods: An Update Focusing on the Red Flour Beetle.” <i>Zoology </i>, vol. 119, no. 4, Elsevier, 2016, pp. 254–61, doi:<a href=\"https://doi.org/10.1016/j.zool.2016.03.006\">10.1016/j.zool.2016.03.006</a>.","apa":"Milutinovic, B., Peuß, R., Ferro, K., &#38; Kurtz, J. (2016). Immune priming in arthropods: an update focusing on the red flour beetle. <i>Zoology </i>. Elsevier. <a href=\"https://doi.org/10.1016/j.zool.2016.03.006\">https://doi.org/10.1016/j.zool.2016.03.006</a>","short":"B. Milutinovic, R. Peuß, K. Ferro, J. Kurtz, Zoology  119 (2016) 254–261.","ieee":"B. Milutinovic, R. Peuß, K. Ferro, and J. Kurtz, “Immune priming in arthropods: an update focusing on the red flour beetle,” <i>Zoology </i>, vol. 119, no. 4. Elsevier, pp. 254–261, 2016."},"ddc":["570"],"department":[{"_id":"SyCr"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"year":"2016","author":[{"full_name":"Milutinovic, Barbara","orcid":"0000-0002-8214-4758","last_name":"Milutinovic","id":"2CDC32B8-F248-11E8-B48F-1D18A9856A87","first_name":"Barbara"},{"first_name":"Robert","full_name":"Peuß, Robert","last_name":"Peuß"},{"first_name":"Kevin","full_name":"Ferro, Kevin","last_name":"Ferro"},{"first_name":"Joachim","last_name":"Kurtz","full_name":"Kurtz, Joachim"}],"doi":"10.1016/j.zool.2016.03.006","oa_version":"Published Version","publisher":"Elsevier","day":"01","volume":119,"intvolume":"       119","oa":1,"issue":"4","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"The authors thank Sophie A.O. Armitage and Jan N. Offenborn for helpful comments on the figures, and two anonymous reviewers for their helpful comments. The project was funded by the Deutsche Forschungsgemeinschaft (DFG, KU 1929/4-2) within the priority programme SPP 1399 “Host–Parasite Coevolution”.","scopus_import":1,"title":"Immune priming in arthropods: an update focusing on the red flour beetle","date_updated":"2021-01-12T06:49:03Z","month":"08","date_published":"2016-08-01T00:00:00Z","publication":"Zoology ","file_date_updated":"2020-07-14T12:44:39Z","page":"254 - 261","_id":"1202","project":[{"_id":"25DAF0B2-B435-11E9-9278-68D0E5697425","grant_number":"CR-118/3-1","name":"Host-Parasite Coevolution"}],"date_created":"2018-12-11T11:50:41Z"},{"type":"journal_article","citation":{"apa":"Hu, F., Rishishwar, L., Sivadas, A., Mitchell, G., King, J., Murphy, T., … Wang, X. (2016). Comparative genomic analysis of Haemophilus haemolyticus and nontypeable Haemophilus influenzae and a new testing scheme for their discrimination. <i>Journal of Clinical Microbiology</i>. American Society for Microbiology. <a href=\"https://doi.org/10.1128/JCM.01511-16\">https://doi.org/10.1128/JCM.01511-16</a>","short":"F. Hu, L. Rishishwar, A. Sivadas, G. Mitchell, J. King, T. Murphy, J. Gilsdorf, L. Mayer, X. Wang, Journal of Clinical Microbiology 54 (2016) 3010–3017.","ieee":"F. Hu <i>et al.</i>, “Comparative genomic analysis of Haemophilus haemolyticus and nontypeable Haemophilus influenzae and a new testing scheme for their discrimination,” <i>Journal of Clinical Microbiology</i>, vol. 54, no. 12. American Society for Microbiology, pp. 3010–3017, 2016.","ama":"Hu F, Rishishwar L, Sivadas A, et al. Comparative genomic analysis of Haemophilus haemolyticus and nontypeable Haemophilus influenzae and a new testing scheme for their discrimination. <i>Journal of Clinical Microbiology</i>. 2016;54(12):3010-3017. doi:<a href=\"https://doi.org/10.1128/JCM.01511-16\">10.1128/JCM.01511-16</a>","chicago":"Hu, Fang, Lavanya Rishishwar, Ambily Sivadas, Gabriel Mitchell, Jordan King, Timothy Murphy, Janet Gilsdorf, Leonard Mayer, and Xin Wang. “Comparative Genomic Analysis of Haemophilus Haemolyticus and Nontypeable Haemophilus Influenzae and a New Testing Scheme for Their Discrimination.” <i>Journal of Clinical Microbiology</i>. American Society for Microbiology, 2016. <a href=\"https://doi.org/10.1128/JCM.01511-16\">https://doi.org/10.1128/JCM.01511-16</a>.","mla":"Hu, Fang, et al. “Comparative Genomic Analysis of Haemophilus Haemolyticus and Nontypeable Haemophilus Influenzae and a New Testing Scheme for Their Discrimination.” <i>Journal of Clinical Microbiology</i>, vol. 54, no. 12, American Society for Microbiology, 2016, pp. 3010–17, doi:<a href=\"https://doi.org/10.1128/JCM.01511-16\">10.1128/JCM.01511-16</a>.","ista":"Hu F, Rishishwar L, Sivadas A, Mitchell G, King J, Murphy T, Gilsdorf J, Mayer L, Wang X. 2016. Comparative genomic analysis of Haemophilus haemolyticus and nontypeable Haemophilus influenzae and a new testing scheme for their discrimination. Journal of Clinical Microbiology. 54(12), 3010–3017."},"publist_id":"6146","abstract":[{"lang":"eng","text":"Haemophilus haemolyticus has been recently discovered to have the potential to cause invasive disease. It is closely related to nontypeable Haemophilus influenzae (NT H. influenzae). NT H. influenzae and H. haemolyticus are often misidentified because none of the existing tests targeting the known phenotypes of H. haemolyticus are able to specifically identify H. haemolyticus. Through comparative genomic analysis of H. haemolyticus and NT H. influenzae, we identified genes unique to H. haemolyticus that can be used as targets for the identification of H. haemolyticus. A real-time PCR targeting purT (encoding phosphoribosylglycinamide formyltransferase 2 in the purine synthesis pathway) was developed and evaluated. The lower limit of detection was 40 genomes/PCR; the sensitivity and specificity in detecting H. haemolyticus were 98.9% and 97%, respectively. To improve the discrimination of H. haemolyticus and NT H. influenzae, a testing scheme combining two targets (H. haemolyticus purT and H. influenzae hpd, encoding protein D lipoprotein) was also evaluated and showed 96.7% sensitivity and 98.2% specificity for the identification of H. haemolyticus and 92.8% sensitivity and 100% specificity for the identification of H. influenzae, respectively. The dual-target testing scheme can be used for the diagnosis and surveillance of infection and disease caused by H. haemolyticus and NT H. influenzae."}],"publication_status":"published","status":"public","language":[{"iso":"eng"}],"quality_controlled":"1","doi":"10.1128/JCM.01511-16","oa_version":"Submitted Version","publisher":"American Society for Microbiology","day":"01","department":[{"_id":"GaTk"}],"year":"2016","author":[{"first_name":"Fang","last_name":"Hu","full_name":"Hu, Fang"},{"last_name":"Rishishwar","full_name":"Rishishwar, Lavanya","first_name":"Lavanya"},{"first_name":"Ambily","last_name":"Sivadas","full_name":"Sivadas, Ambily"},{"full_name":"Mitchell, Gabriel","last_name":"Mitchell","id":"315BCD80-F248-11E8-B48F-1D18A9856A87","first_name":"Gabriel"},{"last_name":"King","full_name":"King, Jordan","first_name":"Jordan"},{"last_name":"Murphy","full_name":"Murphy, Timothy","first_name":"Timothy"},{"full_name":"Gilsdorf, Janet","last_name":"Gilsdorf","first_name":"Janet"},{"last_name":"Mayer","full_name":"Mayer, Leonard","first_name":"Leonard"},{"first_name":"Xin","full_name":"Wang, Xin","last_name":"Wang"}],"scopus_import":1,"main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5121393/"}],"volume":54,"intvolume":"        54","oa":1,"acknowledgement":"We are grateful to ABCs for providing strains and the Bacterial Meningitis Laboratory for technical support.","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","issue":"12","publication":"Journal of Clinical Microbiology","page":"3010 - 3017","_id":"1203","date_created":"2018-12-11T11:50:41Z","title":"Comparative genomic analysis of Haemophilus haemolyticus and nontypeable Haemophilus influenzae and a new testing scheme for their discrimination","date_updated":"2021-01-12T06:49:04Z","month":"12","date_published":"2016-12-01T00:00:00Z"},{"scopus_import":1,"type":"journal_article","citation":{"ama":"Amir A, Lemeshko M, Tokieda T. Surprises in numerical expressions of physical constants. <i>American Mathematical Monthly</i>. 2016;123(6):609-612. doi:<a href=\"https://doi.org/10.4169/amer.math.monthly.123.6.609\">10.4169/amer.math.monthly.123.6.609</a>","chicago":"Amir, Ariel, Mikhail Lemeshko, and Tadashi Tokieda. “Surprises in Numerical Expressions of Physical Constants.” <i>American Mathematical Monthly</i>. Mathematical Association of America, 2016. <a href=\"https://doi.org/10.4169/amer.math.monthly.123.6.609\">https://doi.org/10.4169/amer.math.monthly.123.6.609</a>.","ista":"Amir A, Lemeshko M, Tokieda T. 2016. Surprises in numerical expressions of physical constants. American Mathematical Monthly. 123(6), 609–612.","mla":"Amir, Ariel, et al. “Surprises in Numerical Expressions of Physical Constants.” <i>American Mathematical Monthly</i>, vol. 123, no. 6, Mathematical Association of America, 2016, pp. 609–12, doi:<a href=\"https://doi.org/10.4169/amer.math.monthly.123.6.609\">10.4169/amer.math.monthly.123.6.609</a>.","short":"A. Amir, M. Lemeshko, T. Tokieda, American Mathematical Monthly 123 (2016) 609–612.","apa":"Amir, A., Lemeshko, M., &#38; Tokieda, T. (2016). Surprises in numerical expressions of physical constants. <i>American Mathematical Monthly</i>. Mathematical Association of America. <a href=\"https://doi.org/10.4169/amer.math.monthly.123.6.609\">https://doi.org/10.4169/amer.math.monthly.123.6.609</a>","ieee":"A. Amir, M. Lemeshko, and T. Tokieda, “Surprises in numerical expressions of physical constants,” <i>American Mathematical Monthly</i>, vol. 123, no. 6. Mathematical Association of America, pp. 609–612, 2016."},"quality_controlled":"1","intvolume":"       123","oa":1,"issue":"6","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publist_id":"6143","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1603.00299"}],"volume":123,"abstract":[{"text":"In science, as in life, &quot;surprises&quot; can be adequately appreciated only in the presence of a null model, what we expect a priori. In physics, theories sometimes express the values of dimensionless physical constants as combinations of mathematical constants like π or e. The inverse problem also arises, whereby the measured value of a physical constant admits a &quot;surprisingly&quot; simple approximation in terms of well-known mathematical constants. Can we estimate the probability for this to be a mere coincidence, rather than an inkling of some theory? We answer the question in the most naive form.","lang":"eng"}],"publication_status":"published","status":"public","language":[{"iso":"eng"}],"publisher":"Mathematical Association of America","_id":"1204","day":"01","date_created":"2018-12-11T11:50:42Z","doi":"10.4169/amer.math.monthly.123.6.609","publication":"American Mathematical Monthly","oa_version":"Preprint","page":"609 - 612","year":"2016","date_published":"2016-06-01T00:00:00Z","author":[{"last_name":"Amir","full_name":"Amir, Ariel","first_name":"Ariel"},{"full_name":"Lemeshko, Mikhail","orcid":"0000-0002-6990-7802","last_name":"Lemeshko","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Tadashi","last_name":"Tokieda","full_name":"Tokieda, Tadashi"}],"department":[{"_id":"MiLe"}],"date_updated":"2021-01-12T06:49:04Z","title":"Surprises in numerical expressions of physical constants","month":"06"},{"date_created":"2018-12-11T11:50:42Z","_id":"1205","project":[{"name":"Rigorous Systems Engineering","_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23","call_identifier":"FWF"},{"name":"The Wittgenstein Prize","call_identifier":"FWF","grant_number":"Z211","_id":"25F42A32-B435-11E9-9278-68D0E5697425"}],"page":"757 - 763","file_date_updated":"2020-07-14T12:44:39Z","pubrep_id":"783","date_published":"2016-11-08T00:00:00Z","month":"11","date_updated":"2023-09-18T08:12:48Z","title":"Safety assured formal model driven design of the multifunction vehicle bus controller","scopus_import":1,"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This research is sponsored in part by NSFC Program (No. 91218302, No. 61527812), National Science and Technology Major Project (No. 2016ZX01038101), Tsinghua University Initiative Scientific Research Program (20131089331), MIIT IT funds (Research and application of TCN key technologies) of China, and the National Key Technology R&D Program (No. 2015BAG14B01-02), Austrian Science Fund (FWF) under grants S11402-N23 (RiSE/SHiNE) and Z211-N23.\r\n","oa":1,"intvolume":"      9995","volume":9995,"alternative_title":["LNCS"],"related_material":{"record":[{"id":"434","status":"public","relation":"later_version"}]},"day":"08","publisher":"Springer","oa_version":"Submitted Version","doi":"10.1007/978-3-319-48989-6_47","author":[{"first_name":"Yu","last_name":"Jiang","full_name":"Jiang, Yu"},{"last_name":"Liu","full_name":"Liu, Han","first_name":"Han"},{"first_name":"Houbing","last_name":"Song","full_name":"Song, Houbing"},{"id":"3BDE25AA-F248-11E8-B48F-1D18A9856A87","first_name":"Hui","last_name":"Kong","full_name":"Kong, Hui","orcid":"0000-0002-3066-6941"},{"full_name":"Gu, Ming","last_name":"Gu","first_name":"Ming"},{"first_name":"Jiaguang","last_name":"Sun","full_name":"Sun, Jiaguang"},{"last_name":"Sha","full_name":"Sha, Lui","first_name":"Lui"}],"conference":{"end_date":"2016-11-11","start_date":"2016-11-09","location":"Limassol, Cyprus","name":"FM: International Symposium on Formal Methods"},"year":"2016","department":[{"_id":"ToHe"}],"ddc":["004"],"type":"conference","citation":{"ieee":"Y. Jiang <i>et al.</i>, “Safety assured formal model driven design of the multifunction vehicle bus controller,” presented at the FM: International Symposium on Formal Methods, Limassol, Cyprus, 2016, vol. 9995, pp. 757–763.","apa":"Jiang, Y., Liu, H., Song, H., Kong, H., Gu, M., Sun, J., &#38; Sha, L. (2016). Safety assured formal model driven design of the multifunction vehicle bus controller (Vol. 9995, pp. 757–763). Presented at the FM: International Symposium on Formal Methods, Limassol, Cyprus: Springer. <a href=\"https://doi.org/10.1007/978-3-319-48989-6_47\">https://doi.org/10.1007/978-3-319-48989-6_47</a>","short":"Y. Jiang, H. Liu, H. Song, H. Kong, M. Gu, J. Sun, L. Sha, in:, Springer, 2016, pp. 757–763.","mla":"Jiang, Yu, et al. <i>Safety Assured Formal Model Driven Design of the Multifunction Vehicle Bus Controller</i>. Vol. 9995, Springer, 2016, pp. 757–63, doi:<a href=\"https://doi.org/10.1007/978-3-319-48989-6_47\">10.1007/978-3-319-48989-6_47</a>.","ista":"Jiang Y, Liu H, Song H, Kong H, Gu M, Sun J, Sha L. 2016. Safety assured formal model driven design of the multifunction vehicle bus controller. FM: International Symposium on Formal Methods, LNCS, vol. 9995, 757–763.","chicago":"Jiang, Yu, Han Liu, Houbing Song, Hui Kong, Ming Gu, Jiaguang Sun, and Lui Sha. “Safety Assured Formal Model Driven Design of the Multifunction Vehicle Bus Controller,” 9995:757–63. Springer, 2016. <a href=\"https://doi.org/10.1007/978-3-319-48989-6_47\">https://doi.org/10.1007/978-3-319-48989-6_47</a>.","ama":"Jiang Y, Liu H, Song H, et al. Safety assured formal model driven design of the multifunction vehicle bus controller. In: Vol 9995. Springer; 2016:757-763. doi:<a href=\"https://doi.org/10.1007/978-3-319-48989-6_47\">10.1007/978-3-319-48989-6_47</a>"},"file":[{"content_type":"application/pdf","date_updated":"2020-07-14T12:44:39Z","file_size":281501,"relation":"main_file","checksum":"fea0b3fae9a2a42e8bfec59840e30d8c","access_level":"open_access","file_name":"IST-2017-783-v1+1_FM-Safety-Assured-Development-of-MVBC.pdf","file_id":"4673","date_created":"2018-12-12T10:08:13Z","creator":"system"}],"quality_controlled":"1","language":[{"iso":"eng"}],"status":"public","has_accepted_license":"1","abstract":[{"lang":"eng","text":"In this paper, we present a formal model-driven engineering approach to establishing a safety-assured implementation of Multifunction vehicle bus controller (MVBC) based on the generic reference models and requirements described in the International Electrotechnical Commission (IEC) standard IEC-61375. First, the generic models described in IEC-61375 are translated into a network of timed automata, and some safety requirements tested in IEC-61375 are formalized as timed computation tree logic (TCTL) formulas. With the help of Uppaal, we check and debug whether the timed automata satisfy the formulas or not. Within this step, several logic inconsistencies in the original standard are detected and corrected. Then, we apply the tool Times to generate C code from the verified model, which was later synthesized into a real MVBC chip. Finally, the runtime verification tool RMOR is applied to verify some safety requirements at the implementation level. We set up a real platform with worldwide mostly used MVBC D113, and verify the correctness and the scalability of the synthesized MVBC chip more comprehensively. The errors in the standard has been confirmed and the resulted MVBC has been deployed in real train communication network."}],"publication_status":"published","publist_id":"6144"},{"project":[{"name":"International IST Doctoral Program","call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385"}],"_id":"1206","date_created":"2018-12-11T11:50:43Z","publication":"ChemPhysChem","page":"3649 - 3654","date_published":"2016-09-18T00:00:00Z","ec_funded":1,"date_updated":"2021-01-12T06:49:05Z","title":"Libration of strongly oriented polar molecules inside a superfluid","month":"09","scopus_import":1,"oa":1,"intvolume":"        17","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","issue":"22","main_file_link":[{"url":"https://arxiv.org/abs/1609.08161","open_access":"1"}],"volume":17,"publisher":"Wiley-Blackwell","day":"18","doi":"10.1002/cphc.201601042","oa_version":"Preprint","year":"2016","author":[{"first_name":"Elena","id":"2C21D6E8-F248-11E8-B48F-1D18A9856A87","full_name":"Redchenko, Elena","last_name":"Redchenko"},{"last_name":"Lemeshko","orcid":"0000-0002-6990-7802","full_name":"Lemeshko, Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","first_name":"Mikhail"}],"department":[{"_id":"JoFi"},{"_id":"MiLe"}],"type":"journal_article","citation":{"ieee":"E. Redchenko and M. Lemeshko, “Libration of strongly oriented polar molecules inside a superfluid,” <i>ChemPhysChem</i>, vol. 17, no. 22. Wiley-Blackwell, pp. 3649–3654, 2016.","short":"E. Redchenko, M. Lemeshko, ChemPhysChem 17 (2016) 3649–3654.","apa":"Redchenko, E., &#38; Lemeshko, M. (2016). Libration of strongly oriented polar molecules inside a superfluid. <i>ChemPhysChem</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1002/cphc.201601042\">https://doi.org/10.1002/cphc.201601042</a>","mla":"Redchenko, Elena, and Mikhail Lemeshko. “Libration of Strongly Oriented Polar Molecules inside a Superfluid.” <i>ChemPhysChem</i>, vol. 17, no. 22, Wiley-Blackwell, 2016, pp. 3649–54, doi:<a href=\"https://doi.org/10.1002/cphc.201601042\">10.1002/cphc.201601042</a>.","ista":"Redchenko E, Lemeshko M. 2016. Libration of strongly oriented polar molecules inside a superfluid. ChemPhysChem. 17(22), 3649–3654.","ama":"Redchenko E, Lemeshko M. Libration of strongly oriented polar molecules inside a superfluid. <i>ChemPhysChem</i>. 2016;17(22):3649-3654. doi:<a href=\"https://doi.org/10.1002/cphc.201601042\">10.1002/cphc.201601042</a>","chicago":"Redchenko, Elena, and Mikhail Lemeshko. “Libration of Strongly Oriented Polar Molecules inside a Superfluid.” <i>ChemPhysChem</i>. Wiley-Blackwell, 2016. <a href=\"https://doi.org/10.1002/cphc.201601042\">https://doi.org/10.1002/cphc.201601042</a>."},"quality_controlled":"1","publist_id":"6140","abstract":[{"text":"We study a polar molecule immersed in a superfluid environment, such as a helium nanodroplet or a Bose–Einstein condensate, in the presence of a strong electrostatic field. We show that coupling of the molecular pendular motion, induced by the field, to the fluctuating bath leads to formation of pendulons—spherical harmonic librators dressed by a field of many-particle excitations. We study the behavior of the pendulon in a broad range of molecule–bath and molecule–field interaction strengths, and reveal that its spectrum features a series of instabilities which are absent in the field-free case of the angulon quasiparticle. Furthermore, we show that an external field allows to fine-tune the positions of these instabilities in the molecular rotational spectrum. This opens the door to detailed experimental studies of redistribution of orbital angular momentum in many-particle systems. © 2016 Wiley-VCH Verlag GmbH &amp; Co. KGaA, Weinheim","lang":"eng"}],"publication_status":"published","status":"public","language":[{"iso":"eng"}]},{"oa_version":"Submitted Version","doi":"10.1074/jbc.M116.735142","day":"18","publisher":"American Society for Biochemistry and Molecular Biology","department":[{"_id":"LeSa"}],"year":"2016","author":[{"last_name":"Letts","full_name":"Letts, James A","orcid":"0000-0002-9864-3586","first_name":"James A","id":"322DA418-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Gianluca","full_name":"Degliesposti, Gianluca","last_name":"Degliesposti"},{"first_name":"Karol","id":"5BFF67CE-02D1-11E9-B11A-A5A4D7DFFFD0","last_name":"Fiedorczuk","full_name":"Fiedorczuk, Karol"},{"first_name":"Mark","full_name":"Skehel, Mark","last_name":"Skehel"},{"orcid":"0000-0002-0977-7989","full_name":"Sazanov, Leonid A","last_name":"Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","first_name":"Leonid A"}],"citation":{"mla":"Letts, James A., et al. “Purification of Ovine Respiratory Complex i Results in a Highly Active and Stable Preparation.” <i>Journal of Biological Chemistry</i>, vol. 291, no. 47, American Society for Biochemistry and Molecular Biology, 2016, pp. 24657–75, doi:<a href=\"https://doi.org/10.1074/jbc.M116.735142\">10.1074/jbc.M116.735142</a>.","ista":"Letts JA, Degliesposti G, Fiedorczuk K, Skehel M, Sazanov LA. 2016. Purification of ovine respiratory complex i results in a highly active and stable preparation. Journal of Biological Chemistry. 291(47), 24657–24675.","chicago":"Letts, James A, Gianluca Degliesposti, Karol Fiedorczuk, Mark Skehel, and Leonid A Sazanov. “Purification of Ovine Respiratory Complex i Results in a Highly Active and Stable Preparation.” <i>Journal of Biological Chemistry</i>. American Society for Biochemistry and Molecular Biology, 2016. <a href=\"https://doi.org/10.1074/jbc.M116.735142\">https://doi.org/10.1074/jbc.M116.735142</a>.","ama":"Letts JA, Degliesposti G, Fiedorczuk K, Skehel M, Sazanov LA. Purification of ovine respiratory complex i results in a highly active and stable preparation. <i>Journal of Biological Chemistry</i>. 2016;291(47):24657-24675. doi:<a href=\"https://doi.org/10.1074/jbc.M116.735142\">10.1074/jbc.M116.735142</a>","ieee":"J. A. Letts, G. Degliesposti, K. Fiedorczuk, M. Skehel, and L. A. Sazanov, “Purification of ovine respiratory complex i results in a highly active and stable preparation,” <i>Journal of Biological Chemistry</i>, vol. 291, no. 47. American Society for Biochemistry and Molecular Biology, pp. 24657–24675, 2016.","apa":"Letts, J. A., Degliesposti, G., Fiedorczuk, K., Skehel, M., &#38; Sazanov, L. A. (2016). Purification of ovine respiratory complex i results in a highly active and stable preparation. <i>Journal of Biological Chemistry</i>. American Society for Biochemistry and Molecular Biology. <a href=\"https://doi.org/10.1074/jbc.M116.735142\">https://doi.org/10.1074/jbc.M116.735142</a>","short":"J.A. Letts, G. Degliesposti, K. Fiedorczuk, M. Skehel, L.A. Sazanov, Journal of Biological Chemistry 291 (2016) 24657–24675."},"type":"journal_article","status":"public","language":[{"iso":"eng"}],"publist_id":"6139","publication_status":"published","abstract":[{"lang":"eng","text":"NADH-ubiquinone oxidoreductase (complex I) is the largest (∼1 MDa) and the least characterized complex of the mitochondrial electron transport chain. Because of the ease of sample availability, previous work has focused almost exclusively on bovine complex I. However, only medium resolution structural analyses of this complex have been reported. Working with other mammalian complex I homologues is a potential approach for overcoming these limitations. Due to the inherent difficulty of expressing large membrane protein complexes, screening of complex I homologues is limited to large mammals reared for human consumption. The high sequence identity among these available sources may preclude the benefits of screening. Here, we report the characterization of complex I purified from Ovis aries (ovine) heart mitochondria. All 44 unique subunits of the intact complex were identified by mass spectrometry. We identified differences in the subunit composition of subcomplexes of ovine complex I as compared with bovine, suggesting differential stability of inter-subunit interactions within the complex. Furthermore, the 42-kDa subunit, which is easily lost from the bovine enzyme, remains tightly bound to ovine complex I. Additionally, we developed a novel purification protocol for highly active and stable mitochondrial complex I using the branched-chain detergent lauryl maltose neopentyl glycol. Our data demonstrate that, although closely related, significant differences exist between the biochemical properties of complex I prepared from ovine and bovine mitochondria and that ovine complex I represents a suitable alternative target for further structural studies. "}],"quality_controlled":"1","page":"24657 - 24675","publication":"Journal of Biological Chemistry","date_created":"2018-12-11T11:50:44Z","project":[{"name":"Atomic-Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes (FEBS)","_id":"2593EBD6-B435-11E9-9278-68D0E5697425"},{"call_identifier":"H2020","_id":"2590DB08-B435-11E9-9278-68D0E5697425","grant_number":"701309","name":"Atomic-Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes (H2020)"}],"_id":"1209","month":"11","title":"Purification of ovine respiratory complex i results in a highly active and stable preparation","date_updated":"2021-01-12T06:49:06Z","ec_funded":1,"date_published":"2016-11-18T00:00:00Z","scopus_import":1,"main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5114416/"}],"volume":291,"oa":1,"intvolume":"       291","issue":"47","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"J.A.S supported in part by a Medical Research D.G.Council UK Ph.D. fellowship.\r\nThis work was supported in part by European Union's 2020 Research and Innovation Program under Grant 701309. \r\n"},{"department":[{"_id":"EvBe"}],"date_updated":"2021-01-12T06:49:07Z","title":"Real time analysis of the apical hook development","month":"11","year":"2016","date_published":"2016-11-19T00:00:00Z","author":[{"full_name":"Zhu, Qiang","last_name":"Zhu","first_name":"Qiang","id":"40A4B9E6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Žádníková, Petra","last_name":"Žádníková","first_name":"Petra"},{"first_name":"Dajo","full_name":"Smet, Dajo","last_name":"Smet"},{"first_name":"Dominique","full_name":"Van Der Straeten, Dominique","last_name":"Van Der Straeten"},{"id":"38F4F166-F248-11E8-B48F-1D18A9856A87","first_name":"Eva","last_name":"Benková","full_name":"Benková, Eva","orcid":"0000-0002-8510-9739"}],"publication":"Plant Hormones","doi":"10.1007/978-1-4939-6469-7_1","oa_version":"None","page":"1 - 8","_id":"1210","publisher":"Humana Press","day":"19","date_created":"2018-12-11T11:50:44Z","publist_id":"6135","abstract":[{"text":"Mechanisms for cell protection are essential for survival of multicellular organisms. In plants, the apical hook, which is transiently formed in darkness when the germinating seedling penetrates towards the soil surface, plays such protective role and shields the vitally important shoot apical meristem and cotyledons from damage. The apical hook is formed by bending of the upper hypocotyl soon after germination, and it is maintained in a closed stage while the hypocotyl continues to penetrate through the soil and rapidly opens when exposed to light in proximity of the soil surface. To uncover the complex molecular network orchestrating this spatiotemporally tightly coordinated process, monitoring of the apical hook development in real time is indispensable. Here we describe an imaging platform that enables high-resolution kinetic analysis of this dynamic developmental process. © Springer Science+Business Media New York 2017.","lang":"eng"}],"alternative_title":["Methods in Molecular Biology"],"volume":1497,"publication_status":"published","status":"public","language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"      1497","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We thank Herman  \r\nHöfte \r\n, Todor Asenov, Robert Hauschield, and \r\nMarcal  Gallemi  for  help  with  the  establishment  of  the  real-time  \r\nimaging platform and technical support. This work was supported \r\nby the Czech Science Foundation (GA13-39982S) to Eva Benková. \r\nDominique   Van   Der   Straeten   acknowledges   the   Research   \r\nFoundation  Flanders  for  fi\r\n  nancial  support  (G.0656.13N).  Dajo  \r\nSmet holds a PhD fellowship of the Research Foundation Flanders. ","scopus_import":1,"citation":{"chicago":"Zhu, Qiang, Petra Žádníková, Dajo Smet, Dominique Van Der Straeten, and Eva Benková. “Real Time Analysis of the Apical Hook Development.” In <i>Plant Hormones</i>, 1497:1–8. Humana Press, 2016. <a href=\"https://doi.org/10.1007/978-1-4939-6469-7_1\">https://doi.org/10.1007/978-1-4939-6469-7_1</a>.","ama":"Zhu Q, Žádníková P, Smet D, Van Der Straeten D, Benková E. Real time analysis of the apical hook development. In: <i>Plant Hormones</i>. Vol 1497. Humana Press; 2016:1-8. doi:<a href=\"https://doi.org/10.1007/978-1-4939-6469-7_1\">10.1007/978-1-4939-6469-7_1</a>","ista":"Zhu Q, Žádníková P, Smet D, Van Der Straeten D, Benková E. 2016.Real time analysis of the apical hook development. In: Plant Hormones. Methods in Molecular Biology, vol. 1497, 1–8.","mla":"Zhu, Qiang, et al. “Real Time Analysis of the Apical Hook Development.” <i>Plant Hormones</i>, vol. 1497, Humana Press, 2016, pp. 1–8, doi:<a href=\"https://doi.org/10.1007/978-1-4939-6469-7_1\">10.1007/978-1-4939-6469-7_1</a>.","apa":"Zhu, Q., Žádníková, P., Smet, D., Van Der Straeten, D., &#38; Benková, E. (2016). Real time analysis of the apical hook development. In <i>Plant Hormones</i> (Vol. 1497, pp. 1–8). Humana Press. <a href=\"https://doi.org/10.1007/978-1-4939-6469-7_1\">https://doi.org/10.1007/978-1-4939-6469-7_1</a>","short":"Q. Zhu, P. Žádníková, D. Smet, D. Van Der Straeten, E. Benková, in:, Plant Hormones, Humana Press, 2016, pp. 1–8.","ieee":"Q. Zhu, P. Žádníková, D. Smet, D. Van Der Straeten, and E. Benková, “Real time analysis of the apical hook development,” in <i>Plant Hormones</i>, vol. 1497, Humana Press, 2016, pp. 1–8."},"type":"book_chapter"},{"department":[{"_id":"JiFr"}],"author":[{"last_name":"Rakusová","full_name":"Rakusová, Hana","first_name":"Hana"},{"id":"47E8FC1C-F248-11E8-B48F-1D18A9856A87","first_name":"Mohamad","last_name":"Abbas","full_name":"Abbas, Mohamad"},{"first_name":"Huibin","id":"31435098-F248-11E8-B48F-1D18A9856A87","last_name":"Han","full_name":"Han, Huibin"},{"first_name":"Siyuan","full_name":"Song, Siyuan","last_name":"Song"},{"first_name":"Hélène","last_name":"Robert","full_name":"Robert, Hélène"},{"orcid":"0000-0002-8302-7596","full_name":"Friml, Jirí","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jirí"}],"year":"2016","oa_version":"Submitted Version","doi":"10.1016/j.cub.2016.08.067","day":"21","publisher":"Cell Press","language":[{"iso":"eng"}],"status":"public","has_accepted_license":"1","abstract":[{"text":"Plants adjust their growth according to gravity. Gravitropism involves gravity perception, signal transduction, and asymmetric growth response, with organ bending as a consequence [1]. Asymmetric growth results from the asymmetric distribution of the plant-specific signaling molecule auxin [2] that is generated by lateral transport, mediated in the hypocotyl predominantly by the auxin transporter PIN-FORMED3 (PIN3) [3–5]. Gravity stimulation polarizes PIN3 to the bottom sides of endodermal cells, correlating with increased auxin accumulation in adjacent tissues at the lower side of the stimulated organ, where auxin induces cell elongation and, hence, organ bending. A curvature response allows the hypocotyl to resume straight growth at a defined angle [6], implying that at some point auxin symmetry is restored to prevent overbending. Here, we present initial insights into cellular and molecular mechanisms that lead to the termination of the tropic response. We identified an auxin feedback on PIN3 polarization as underlying mechanism that restores symmetry of the PIN3-dependent auxin flow. Thus, two mechanistically distinct PIN3 polarization events redirect auxin fluxes at different time points of the gravity response: first, gravity-mediated redirection of PIN3-mediated auxin flow toward the lower hypocotyl side, where auxin gradually accumulates and promotes growth, and later PIN3 polarization to the opposite cell side, depleting this auxin maximum to end the bending. Accordingly, genetic or pharmacological interference with the late PIN3 polarization prevents termination of the response and leads to hypocotyl overbending. This observation reveals a role of auxin feedback on PIN polarity in the termination of the tropic response. © 2016 Elsevier Ltd","lang":"eng"}],"publication_status":"published","publist_id":"6138","quality_controlled":"1","citation":{"mla":"Rakusová, Hana, et al. “Termination of Shoot Gravitropic Responses by Auxin Feedback on PIN3 Polarity.” <i>Current Biology</i>, vol. 26, no. 22, Cell Press, 2016, pp. 3026–32, doi:<a href=\"https://doi.org/10.1016/j.cub.2016.08.067\">10.1016/j.cub.2016.08.067</a>.","ista":"Rakusová H, Abbas M, Han H, Song S, Robert H, Friml J. 2016. Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity. Current Biology. 26(22), 3026–3032.","ama":"Rakusová H, Abbas M, Han H, Song S, Robert H, Friml J. Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity. <i>Current Biology</i>. 2016;26(22):3026-3032. doi:<a href=\"https://doi.org/10.1016/j.cub.2016.08.067\">10.1016/j.cub.2016.08.067</a>","chicago":"Rakusová, Hana, Mohamad Abbas, Huibin Han, Siyuan Song, Hélène Robert, and Jiří Friml. “Termination of Shoot Gravitropic Responses by Auxin Feedback on PIN3 Polarity.” <i>Current Biology</i>. Cell Press, 2016. <a href=\"https://doi.org/10.1016/j.cub.2016.08.067\">https://doi.org/10.1016/j.cub.2016.08.067</a>.","ieee":"H. Rakusová, M. Abbas, H. Han, S. Song, H. Robert, and J. Friml, “Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity,” <i>Current Biology</i>, vol. 26, no. 22. Cell Press, pp. 3026–3032, 2016.","short":"H. Rakusová, M. Abbas, H. Han, S. Song, H. Robert, J. Friml, Current Biology 26 (2016) 3026–3032.","apa":"Rakusová, H., Abbas, M., Han, H., Song, S., Robert, H., &#38; Friml, J. (2016). Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity. <i>Current Biology</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cub.2016.08.067\">https://doi.org/10.1016/j.cub.2016.08.067</a>"},"type":"journal_article","file":[{"checksum":"79ed2498185a027cf51a8f88100379e6","relation":"main_file","file_size":5391923,"date_updated":"2020-07-14T12:44:39Z","content_type":"application/pdf","file_name":"IST-2018-1008-v1+1_Rakusova_CurrBiol_2016_proof.pdf","access_level":"open_access","file_id":"4757","date_created":"2018-12-12T10:09:33Z","creator":"system"}],"ddc":["581"],"month":"11","title":"Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity","date_updated":"2021-01-12T06:49:08Z","ec_funded":1,"date_published":"2016-11-21T00:00:00Z","page":"3026 - 3032","file_date_updated":"2020-07-14T12:44:39Z","pubrep_id":"1008","publication":"Current Biology","date_created":"2018-12-11T11:50:44Z","project":[{"name":"Polarity and subcellular dynamics in plants","_id":"25716A02-B435-11E9-9278-68D0E5697425","grant_number":"282300","call_identifier":"FP7"}],"_id":"1212","volume":26,"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","issue":"22","acknowledgement":"We thank Dr. Jie Li (Key Laboratory of Plant Molecular Physiology, Chinese Academy of Science, China) for the pPIN3::PIN3-GFP/DII::VENUS line and Martine De Cock for help in preparing the manuscript. This work was supported by the European Research Council (project ERC-2011-StG-20101109-PSDP), by the Czech Science Foundation GAČR (GA13-40637S) to J.F., and by the Ministry of Education, Youth and Sports of the Czech Republic under the project CEITEC 2020 (LQ1601) to H.S.R. H.R. is indebted to the Agency for Innovation by Science and Technology (IWT) for a predoctoral fellowship.\r\n","intvolume":"        26","oa":1,"scopus_import":1},{"_id":"1214","publisher":"IEEE","day":"28","date_created":"2018-12-11T11:50:45Z","doi":"10.1109/IROS.2016.7759138","oa_version":"None","year":"2016","conference":{"name":"IEEE RSJ International Conference on Intelligent Robots and Systems IROS ","location":"Daejeon, Korea","start_date":"2016-09-09","end_date":"2016-09-14"},"date_published":"2016-11-28T00:00:00Z","author":[{"id":"3A276B68-F248-11E8-B48F-1D18A9856A87","first_name":"Georg S","last_name":"Martius","full_name":"Martius, Georg S"},{"last_name":"Hostettler","full_name":"Hostettler, Raphael","first_name":"Raphael"},{"full_name":"Knoll, Alois","last_name":"Knoll","first_name":"Alois"},{"first_name":"Ralf","full_name":"Der, Ralf","last_name":"Der"}],"department":[{"_id":"ChLa"},{"_id":"GaTk"}],"title":"Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic arm","date_updated":"2021-01-12T06:49:08Z","month":"11","type":"conference","scopus_import":1,"citation":{"ieee":"G. S. Martius, R. Hostettler, A. Knoll, and R. Der, “Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic arm,” presented at the IEEE RSJ International Conference on Intelligent Robots and Systems IROS , Daejeon, Korea, 2016, vol. 2016–November.","short":"G.S. Martius, R. Hostettler, A. Knoll, R. Der, in:, IEEE, 2016.","apa":"Martius, G. S., Hostettler, R., Knoll, A., &#38; Der, R. (2016). Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic arm (Vol. 2016–November). Presented at the IEEE RSJ International Conference on Intelligent Robots and Systems IROS , Daejeon, Korea: IEEE. <a href=\"https://doi.org/10.1109/IROS.2016.7759138\">https://doi.org/10.1109/IROS.2016.7759138</a>","ista":"Martius GS, Hostettler R, Knoll A, Der R. 2016. Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic arm. IEEE RSJ International Conference on Intelligent Robots and Systems IROS  vol. 2016–November, 7759138.","mla":"Martius, Georg S., et al. <i>Compliant Control for Soft Robots: Emergent Behavior of a Tendon Driven Anthropomorphic Arm</i>. Vol. 2016–November, 7759138, IEEE, 2016, doi:<a href=\"https://doi.org/10.1109/IROS.2016.7759138\">10.1109/IROS.2016.7759138</a>.","ama":"Martius GS, Hostettler R, Knoll A, Der R. Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic arm. In: Vol 2016-November. IEEE; 2016. doi:<a href=\"https://doi.org/10.1109/IROS.2016.7759138\">10.1109/IROS.2016.7759138</a>","chicago":"Martius, Georg S, Raphael Hostettler, Alois Knoll, and Ralf Der. “Compliant Control for Soft Robots: Emergent Behavior of a Tendon Driven Anthropomorphic Arm,” Vol. 2016–November. IEEE, 2016. <a href=\"https://doi.org/10.1109/IROS.2016.7759138\">https://doi.org/10.1109/IROS.2016.7759138</a>."},"quality_controlled":"1","article_number":"7759138","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"RD thanks for the hospitality at the Max-Planck-Institute and for helpful discussions with Nihat Ay and Keyan Zahedi.","publist_id":"6121","publication_status":"published","volume":"2016-November","abstract":[{"text":"With the accelerated development of robot technologies, optimal control becomes one of the central themes of research. In traditional approaches, the controller, by its internal functionality, finds appropriate actions on the basis of the history of sensor values, guided by the goals, intentions, objectives, learning schemes, and so forth. While very successful with classical robots, these methods run into severe difficulties when applied to soft robots, a new field of robotics with large interest for human-robot interaction. We claim that a novel controller paradigm opens new perspective for this field. This paper applies a recently developed neuro controller with differential extrinsic synaptic plasticity to a muscle-tendon driven arm-shoulder system from the Myorobotics toolkit. In the experiments, we observe a vast variety of self-organized behavior patterns: when left alone, the arm realizes pseudo-random sequences of different poses. By applying physical forces, the system can be entrained into definite motion patterns like wiping a table. Most interestingly, after attaching an object, the controller gets in a functional resonance with the object's internal dynamics, starting to shake spontaneously bottles half-filled with water or sensitively driving an attached pendulum into a circular mode. When attached to the crank of a wheel the neural system independently develops to rotate it. In this way, the robot discovers affordances of objects its body is interacting with.","lang":"eng"}],"status":"public","language":[{"iso":"eng"}]},{"type":"conference","citation":{"short":"K. Chatterjee, R. Ibsen-Jensen, in:, IOS Press, 2016, pp. 1432–1439.","apa":"Chatterjee, K., &#38; Ibsen-Jensen, R. (2016). The complexity of deciding legality of a single step of magic: The gathering (Vol. 285, pp. 1432–1439). Presented at the ECAI: European Conference on Artificial Intelligence, The Hague, Netherlands: IOS Press. <a href=\"https://doi.org/10.3233/978-1-61499-672-9-1432\">https://doi.org/10.3233/978-1-61499-672-9-1432</a>","ieee":"K. Chatterjee and R. Ibsen-Jensen, “The complexity of deciding legality of a single step of magic: The gathering,” presented at the ECAI: European Conference on Artificial Intelligence, The Hague, Netherlands, 2016, vol. 285, pp. 1432–1439.","chicago":"Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. “The Complexity of Deciding Legality of a Single Step of Magic: The Gathering,” 285:1432–39. IOS Press, 2016. <a href=\"https://doi.org/10.3233/978-1-61499-672-9-1432\">https://doi.org/10.3233/978-1-61499-672-9-1432</a>.","ama":"Chatterjee K, Ibsen-Jensen R. The complexity of deciding legality of a single step of magic: The gathering. In: Vol 285. IOS Press; 2016:1432-1439. doi:<a href=\"https://doi.org/10.3233/978-1-61499-672-9-1432\">10.3233/978-1-61499-672-9-1432</a>","ista":"Chatterjee K, Ibsen-Jensen R. 2016. The complexity of deciding legality of a single step of magic: The gathering. ECAI: European Conference on Artificial Intelligence, Frontiers in Artificial Intelligence and Applications, vol. 285, 1432–1439.","mla":"Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. <i>The Complexity of Deciding Legality of a Single Step of Magic: The Gathering</i>. Vol. 285, IOS Press, 2016, pp. 1432–39, doi:<a href=\"https://doi.org/10.3233/978-1-61499-672-9-1432\">10.3233/978-1-61499-672-9-1432</a>."},"file":[{"content_type":"application/pdf","date_updated":"2020-07-14T12:46:35Z","file_size":2116225,"relation":"main_file","checksum":"848043c812ace05e459579c923f3d3cf","access_level":"open_access","file_name":"IST-2018-950-v1+1_2016_Chatterjee_The_complexity.pdf","file_id":"4658","date_created":"2018-12-12T10:07:59Z","creator":"system"}],"ddc":["004"],"has_accepted_license":"1","status":"public","language":[{"iso":"eng"}],"publist_id":"7342","publication_status":"published","abstract":[{"lang":"eng","text":"Magic: the Gathering is a game about magical combat for any number of players. Formally it is a zero-sum, imperfect information stochastic game that consists of a potentially unbounded number of steps. We consider the problem of deciding if a move is legal in a given single step of Magic. We show that the problem is (a) coNP-complete in general; and (b) in P if either of two small sets of cards are not used. Our lower bound holds even for single-player Magic games. The significant aspects of our results are as follows: First, in most real-life game problems, the task of deciding whether a given move is legal in a single step is trivial, and the computationally hard task is to find the best sequence of legal moves in the presence of multiple players. In contrast, quite uniquely our hardness result holds for single step and with only one-player. Second, we establish efficient algorithms for important special cases of Magic."}],"quality_controlled":"1","oa_version":"Published Version","doi":"10.3233/978-1-61499-672-9-1432","day":"01","publisher":"IOS Press","tmp":{"image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","short":"CC BY-NC (4.0)"},"department":[{"_id":"KrCh"}],"conference":{"name":"ECAI: European Conference on Artificial Intelligence","end_date":"2016-09-02","location":"The Hague, Netherlands","start_date":"2016-08-29"},"year":"2016","author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","last_name":"Chatterjee","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu"},{"orcid":"0000-0003-4783-0389","full_name":"Ibsen-Jensen, Rasmus","last_name":"Ibsen-Jensen","first_name":"Rasmus","id":"3B699956-F248-11E8-B48F-1D18A9856A87"}],"license":"https://creativecommons.org/licenses/by-nc/4.0/","scopus_import":1,"volume":285,"alternative_title":["Frontiers in Artificial Intelligence and Applications"],"oa":1,"intvolume":"       285","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","page":"1432 - 1439","file_date_updated":"2020-07-14T12:46:35Z","pubrep_id":"950","date_created":"2018-12-11T11:46:41Z","_id":"478","month":"01","date_updated":"2021-01-12T08:00:54Z","title":"The complexity of deciding legality of a single step of magic: The gathering","date_published":"2016-01-01T00:00:00Z"},{"alternative_title":["Proceedings International Conference on Software Engineering"],"abstract":[{"lang":"eng","text":"Clinical guidelines and decision support systems (DSS) play an important role in daily practices of medicine. Many text-based guidelines have been encoded for work-flow simulation of DSS to automate health care. During the collaboration with Carle hospital to develop a DSS, we identify that, for some complex and life-critical diseases, it is highly desirable to automatically rigorously verify some complex temporal properties in guidelines, which brings new challenges to current simulation based DSS with limited support of automatical formal verification and real-time data analysis. In this paper, we conduct the first study on applying runtime verification to cooperate with current DSS based on real-time data. Within the proposed technique, a user-friendly domain specific language, named DRTV, is designed to specify vital real-time data sampled by medical devices and temporal properties originated from clinical guidelines. Some interfaces are developed for data acquisition and communication. Then, for medical practice scenarios described in DRTV model, we will automatically generate event sequences and runtime property verifier automata. If a temporal property violates, real-time warnings will be produced by the formal verifier and passed to medical DSS. We have used DRTV to specify different kinds of medical care scenarios, and applied the proposed technique to assist existing DSS. As presented in experiment results, in terms of warning detection, it outperforms the only use of DSS or human inspection, and improves the quality of clinical health care of hospital"}],"publication_status":"published","publist_id":"7341","language":[{"iso":"eng"}],"status":"public","quality_controlled":"1","acknowledgement":"This work is supported by NSF CNS 13-30077, NSF CNS 13-29886, NSF CNS 15-45002, and NSFC 61303014.\r\nThe authors thank Dr.  Bobby and Dr.  Hill at Carle Hospital, Urbana, IL for their help with the discussion on medical  knowledge.\r\n\r\n","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","type":"conference","scopus_import":1,"citation":{"mla":"Jiang, Yu, et al. “Use Runtime Verification to Improve the Quality of Medical Care Practice.” <i>Proceedings of the 38th International Conference on Software Engineering Companion </i>, IEEE, 2016, pp. 112–21, doi:<a href=\"https://doi.org/10.1145/2889160.2889233\">10.1145/2889160.2889233</a>.","ista":"Jiang Y, Liu H, Kong H, Wang R, Hosseini M, Sun J, Sha L. 2016. Use runtime verification to improve the quality of medical care practice. Proceedings of the 38th International Conference on Software Engineering Companion . ICSE: International Conference on Software Engineering, Proceedings International Conference on Software Engineering, , 112–121.","ama":"Jiang Y, Liu H, Kong H, et al. Use runtime verification to improve the quality of medical care practice. In: <i>Proceedings of the 38th International Conference on Software Engineering Companion </i>. IEEE; 2016:112-121. doi:<a href=\"https://doi.org/10.1145/2889160.2889233\">10.1145/2889160.2889233</a>","chicago":"Jiang, Yu, Han Liu, Hui Kong, Rui Wang, Mohamad Hosseini, Jiaguang Sun, and Lui Sha. “Use Runtime Verification to Improve the Quality of Medical Care Practice.” In <i>Proceedings of the 38th International Conference on Software Engineering Companion </i>, 112–21. IEEE, 2016. <a href=\"https://doi.org/10.1145/2889160.2889233\">https://doi.org/10.1145/2889160.2889233</a>.","ieee":"Y. Jiang <i>et al.</i>, “Use runtime verification to improve the quality of medical care practice,” in <i>Proceedings of the 38th International Conference on Software Engineering Companion </i>, Austin, TX, USA, 2016, pp. 112–121.","apa":"Jiang, Y., Liu, H., Kong, H., Wang, R., Hosseini, M., Sun, J., &#38; Sha, L. (2016). Use runtime verification to improve the quality of medical care practice. In <i>Proceedings of the 38th International Conference on Software Engineering Companion </i> (pp. 112–121). Austin, TX, USA: IEEE. <a href=\"https://doi.org/10.1145/2889160.2889233\">https://doi.org/10.1145/2889160.2889233</a>","short":"Y. Jiang, H. Liu, H. Kong, R. Wang, M. Hosseini, J. Sun, L. Sha, in:, Proceedings of the 38th International Conference on Software Engineering Companion , IEEE, 2016, pp. 112–121."},"title":"Use runtime verification to improve the quality of medical care practice","date_updated":"2021-01-12T08:00:55Z","department":[{"_id":"ToHe"}],"month":"05","date_published":"2016-05-14T00:00:00Z","author":[{"first_name":"Yu","last_name":"Jiang","full_name":"Jiang, Yu"},{"first_name":"Han","last_name":"Liu","full_name":"Liu, Han"},{"id":"3BDE25AA-F248-11E8-B48F-1D18A9856A87","first_name":"Hui","full_name":"Kong, Hui","orcid":"0000-0002-3066-6941","last_name":"Kong"},{"first_name":"Rui","last_name":"Wang","full_name":"Wang, Rui"},{"first_name":"Mohamad","last_name":"Hosseini","full_name":"Hosseini, Mohamad"},{"first_name":"Jiaguang","full_name":"Sun, Jiaguang","last_name":"Sun"},{"last_name":"Sha","full_name":"Sha, Lui","first_name":"Lui"}],"year":"2016","conference":{"name":"ICSE: International Conference on Software Engineering","location":"Austin, TX, USA","start_date":"2016-05-14","end_date":"2016-05-22"},"publication":"Proceedings of the 38th International Conference on Software Engineering Companion ","doi":"10.1145/2889160.2889233","oa_version":"None","page":"112 - 121","_id":"479","publisher":"IEEE","date_created":"2018-12-11T11:46:42Z","day":"14"},{"doi":"10.1145/2933575.2934513","oa_version":"Preprint","publisher":"IEEE","day":"05","department":[{"_id":"KrCh"}],"year":"2016","conference":{"start_date":"2016-07-05","location":"New York, NY, USA","end_date":"2016-07-08","name":"LICS: Logic in Computer Science"},"author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X"},{"first_name":"Laurent","last_name":"Doyen","full_name":"Doyen, Laurent"}],"type":"conference","citation":{"ama":"Chatterjee K, Doyen L. Perfect-information stochastic games with generalized mean-payoff objectives. In: Vol 05-08-July-2016. IEEE; 2016:247-256. doi:<a href=\"https://doi.org/10.1145/2933575.2934513\">10.1145/2933575.2934513</a>","chicago":"Chatterjee, Krishnendu, and Laurent Doyen. “Perfect-Information Stochastic Games with Generalized Mean-Payoff Objectives,” 05-08-July-2016:247–56. IEEE, 2016. <a href=\"https://doi.org/10.1145/2933575.2934513\">https://doi.org/10.1145/2933575.2934513</a>.","mla":"Chatterjee, Krishnendu, and Laurent Doyen. <i>Perfect-Information Stochastic Games with Generalized Mean-Payoff Objectives</i>. Vol. 05-08-July-2016, IEEE, 2016, pp. 247–56, doi:<a href=\"https://doi.org/10.1145/2933575.2934513\">10.1145/2933575.2934513</a>.","ista":"Chatterjee K, Doyen L. 2016. Perfect-information stochastic games with generalized mean-payoff objectives. LICS: Logic in Computer Science, Proceedings Symposium on Logic in Computer Science, vol. 05-08-July-2016, 247–256.","short":"K. Chatterjee, L. Doyen, in:, IEEE, 2016, pp. 247–256.","apa":"Chatterjee, K., &#38; Doyen, L. (2016). Perfect-information stochastic games with generalized mean-payoff objectives (Vol. 05-08-July-2016, pp. 247–256). Presented at the LICS: Logic in Computer Science, New York, NY, USA: IEEE. <a href=\"https://doi.org/10.1145/2933575.2934513\">https://doi.org/10.1145/2933575.2934513</a>","ieee":"K. Chatterjee and L. Doyen, “Perfect-information stochastic games with generalized mean-payoff objectives,” presented at the LICS: Logic in Computer Science, New York, NY, USA, 2016, vol. 05-08-July-2016, pp. 247–256."},"publist_id":"7340","abstract":[{"text":"Graph games provide the foundation for modeling and synthesizing reactive processes. In the synthesis of stochastic reactive processes, the traditional model is perfect-information stochastic games, where some transitions of the game graph are controlled by two adversarial players, and the other transitions are executed probabilistically. We consider such games where the objective is the conjunction of several quantitative objectives (specified as mean-payoff conditions), which we refer to as generalized mean-payoff objectives. The basic decision problem asks for the existence of a finite-memory strategy for a player that ensures the generalized mean-payoff objective be satisfied with a desired probability against all strategies of the opponent. A special case of the decision problem is the almost-sure problem where the desired probability is 1. Previous results presented a semi-decision procedure for -approximations of the almost-sure problem. In this work, we show that both the almost-sure problem as well as the general basic decision problem are coNP-complete, significantly improving the previous results. Moreover, we show that in the case of 1-player stochastic games, randomized memoryless strategies are sufficient and the problem can be solved in polynomial time. In contrast, in two-player stochastic games, we show that even with randomized strategies exponential memory is required in general, and present a matching exponential upper bound. We also study the basic decision problem with infinite-memory strategies and present computational complexity results for the problem. Our results are relevant in the synthesis of stochastic reactive systems with multiple quantitative requirements.","lang":"eng"}],"publication_status":"published","status":"public","language":[{"iso":"eng"}],"quality_controlled":"1","page":"247 - 256","project":[{"name":"Rigorous Systems Engineering","grant_number":"S 11407_N23","_id":"25832EC2-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"call_identifier":"FP7","grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425","name":"Quantitative Graph Games: Theory and Applications"},{"name":"Efficient Algorithms for Computer Aided Verification","grant_number":"ICT15-003","_id":"25892FC0-B435-11E9-9278-68D0E5697425"}],"_id":"480","date_created":"2018-12-11T11:46:42Z","date_updated":"2021-01-12T08:00:56Z","title":"Perfect-information stochastic games with generalized mean-payoff objectives","month":"07","date_published":"2016-07-05T00:00:00Z","ec_funded":1,"scopus_import":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1604.06376"}],"alternative_title":["Proceedings Symposium on Logic in Computer Science"],"volume":"05-08-July-2016","oa":1,"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87"},{"day":"29","date_created":"2018-12-11T11:46:43Z","_id":"482","publisher":"Optica Publishing Group","oa_version":"None","doi":"10.1364/NP.2016.NTh3A.6","year":"2016","conference":{"name":"NP: Nonlinear Photonics","end_date":"2016-09-08","start_date":"2016-09-05","location":"Sydney, Australia"},"article_processing_charge":"No","author":[{"first_name":"Alfredo","last_name":"Rueda","full_name":"Rueda, Alfredo"},{"first_name":"Florian","full_name":"Sedlmeir, Florian","last_name":"Sedlmeir"},{"full_name":"Collodo, Michele","last_name":"Collodo","first_name":"Michele"},{"full_name":"Vogl, Ulrich","last_name":"Vogl","first_name":"Ulrich"},{"first_name":"Birgit","last_name":"Stiller","full_name":"Stiller, Birgit"},{"first_name":"Gerhard","full_name":"Schunk, Gerhard","last_name":"Schunk"},{"first_name":"Dmitry","full_name":"Strekalov, Dmitry","last_name":"Strekalov"},{"first_name":"Christoph","last_name":"Marquardt","full_name":"Marquardt, Christoph"},{"full_name":"Fink, Johannes M","orcid":"0000-0001-8112-028X","last_name":"Fink","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","first_name":"Johannes M"},{"last_name":"Painter","full_name":"Painter, Oskar","first_name":"Oskar"},{"first_name":"Gerd","full_name":"Leuchs, Gerd","last_name":"Leuchs"},{"full_name":"Schwefel, Harald","last_name":"Schwefel","first_name":"Harald"}],"date_published":"2016-08-29T00:00:00Z","month":"08","department":[{"_id":"JoFi"}],"title":"Nonlinear single sideband microwave to optical conversion using an electro-optic WGM-resonator","date_updated":"2023-10-17T12:16:43Z","type":"conference","scopus_import":"1","citation":{"mla":"Rueda, Alfredo, et al. <i>Nonlinear Single Sideband Microwave to Optical Conversion Using an Electro-Optic WGM-Resonator</i>. Optica Publishing Group, 2016, doi:<a href=\"https://doi.org/10.1364/NP.2016.NTh3A.6\">10.1364/NP.2016.NTh3A.6</a>.","ista":"Rueda A, Sedlmeir F, Collodo M, Vogl U, Stiller B, Schunk G, Strekalov D, Marquardt C, Fink JM, Painter O, Leuchs G, Schwefel H. 2016. Nonlinear single sideband microwave to optical conversion using an electro-optic WGM-resonator. NP: Nonlinear Photonics, Optics InfoBase Conference Papers, .","ama":"Rueda A, Sedlmeir F, Collodo M, et al. Nonlinear single sideband microwave to optical conversion using an electro-optic WGM-resonator. In: Optica Publishing Group; 2016. doi:<a href=\"https://doi.org/10.1364/NP.2016.NTh3A.6\">10.1364/NP.2016.NTh3A.6</a>","chicago":"Rueda, Alfredo, Florian Sedlmeir, Michele Collodo, Ulrich Vogl, Birgit Stiller, Gerhard Schunk, Dmitry Strekalov, et al. “Nonlinear Single Sideband Microwave to Optical Conversion Using an Electro-Optic WGM-Resonator.” Optica Publishing Group, 2016. <a href=\"https://doi.org/10.1364/NP.2016.NTh3A.6\">https://doi.org/10.1364/NP.2016.NTh3A.6</a>.","ieee":"A. Rueda <i>et al.</i>, “Nonlinear single sideband microwave to optical conversion using an electro-optic WGM-resonator,” presented at the NP: Nonlinear Photonics, Sydney, Australia, 2016.","apa":"Rueda, A., Sedlmeir, F., Collodo, M., Vogl, U., Stiller, B., Schunk, G., … Schwefel, H. (2016). Nonlinear single sideband microwave to optical conversion using an electro-optic WGM-resonator. Presented at the NP: Nonlinear Photonics, Sydney, Australia: Optica Publishing Group. <a href=\"https://doi.org/10.1364/NP.2016.NTh3A.6\">https://doi.org/10.1364/NP.2016.NTh3A.6</a>","short":"A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, in:, Optica Publishing Group, 2016."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","status":"public","language":[{"iso":"eng"}],"publist_id":"7339","abstract":[{"lang":"eng","text":"Nonlinear electro-optical conversion of microwave radiation into the optical telecommunication band is achieved within a crystalline whispering gallery mode resonator, reaching 0.1% photon number conversion efficiency with MHz bandwidth."}],"alternative_title":["Optics InfoBase Conference Papers"],"publication_status":"published"},{"oa_version":"Submitted Version","doi":"10.1080/15592324.2016.1191734","day":"02","publisher":"Taylor & Francis","department":[{"_id":"JiFr"}],"year":"2016","author":[{"first_name":"Zhijun","full_name":"Liu, Zhijun","last_name":"Liu"},{"full_name":"Yang, Nan","last_name":"Yang","first_name":"Nan"},{"full_name":"Lv, Yanting","last_name":"Lv","first_name":"Yanting"},{"last_name":"Pan","full_name":"Pan, Lixia","first_name":"Lixia"},{"full_name":"Lv, Shuo","last_name":"Lv","first_name":"Shuo"},{"id":"31435098-F248-11E8-B48F-1D18A9856A87","first_name":"Huibin","full_name":"Han, Huibin","last_name":"Han"},{"first_name":"Guodong","last_name":"Wang","full_name":"Wang, Guodong"}],"type":"journal_article","citation":{"ista":"Liu Z, Yang N, Lv Y, Pan L, Lv S, Han H, Wang G. 2016. The CLE gene family in Populus trichocarpa. Plant Signaling &#38; Behavior. 11(6), e1191734.","mla":"Liu, Zhijun, et al. “The CLE Gene Family in Populus Trichocarpa.” <i>Plant Signaling &#38; Behavior</i>, vol. 11, no. 6, e1191734, Taylor &#38; Francis, 2016, doi:<a href=\"https://doi.org/10.1080/15592324.2016.1191734\">10.1080/15592324.2016.1191734</a>.","ama":"Liu Z, Yang N, Lv Y, et al. The CLE gene family in Populus trichocarpa. <i>Plant Signaling &#38; Behavior</i>. 2016;11(6). doi:<a href=\"https://doi.org/10.1080/15592324.2016.1191734\">10.1080/15592324.2016.1191734</a>","chicago":"Liu, Zhijun, Nan Yang, Yanting Lv, Lixia Pan, Shuo Lv, Huibin Han, and Guodong Wang. “The CLE Gene Family in Populus Trichocarpa.” <i>Plant Signaling &#38; Behavior</i>. Taylor &#38; Francis, 2016. <a href=\"https://doi.org/10.1080/15592324.2016.1191734\">https://doi.org/10.1080/15592324.2016.1191734</a>.","ieee":"Z. Liu <i>et al.</i>, “The CLE gene family in Populus trichocarpa,” <i>Plant Signaling &#38; Behavior</i>, vol. 11, no. 6. Taylor &#38; Francis, 2016.","short":"Z. Liu, N. Yang, Y. Lv, L. Pan, S. Lv, H. Han, G. Wang, Plant Signaling &#38; Behavior 11 (2016).","apa":"Liu, Z., Yang, N., Lv, Y., Pan, L., Lv, S., Han, H., &#38; Wang, G. (2016). The CLE gene family in Populus trichocarpa. <i>Plant Signaling &#38; Behavior</i>. Taylor &#38; Francis. <a href=\"https://doi.org/10.1080/15592324.2016.1191734\">https://doi.org/10.1080/15592324.2016.1191734</a>"},"status":"public","language":[{"iso":"eng"}],"publist_id":"7308","abstract":[{"text":"The CLE (CLAVATA3/Embryo Surrounding Region-related) peptides are small secreted signaling peptides that are primarily involved in the regulation of stem cell homeostasis in different plant meristems. Particularly, the characterization of the CLE41-PXY/TDR signaling pathway has greatly advanced our understanding on the potential roles of CLE peptides in vascular development and wood formation. Nevertheless, our knowledge on this gene family in a tree species is limited. In a recent study, we reported on a systematically investigation of the CLE gene family in Populus trichocarpa . The potential roles of PtCLE genes were studied by comparative analysis and transcriptional pro fi ling. Among fi fty PtCLE members, many PtCLE proteins share identical CLE motifs or contain the same CLE motif as that of AtCLEs, while PtCLE genes exhibited either comparable or distinct expression patterns comparing to their Arabidopsis counterparts. These fi ndings indicate the existence of both functional conservation and functional divergence between PtCLEs and their AtCLE orthologues. Our results provide valuable resources for future functional investigations of these critical signaling molecules in woody plants. ","lang":"eng"}],"publication_status":"published","quality_controlled":"1","publication":"Plant Signaling & Behavior","date_created":"2018-12-11T11:46:53Z","_id":"510","month":"06","title":"The CLE gene family in Populus trichocarpa","date_updated":"2023-10-17T11:13:40Z","article_processing_charge":"No","date_published":"2016-06-02T00:00:00Z","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4973754/"}],"volume":11,"intvolume":"        11","oa":1,"acknowledgement":"We are grateful to Dr. Long (Laboratoire de Reproduction et Developpement des Plantes,CNRS,INRA,ENSLyon,UCBL,Universite de Lyon,France)for critical reading of the article. Work in our group is supported by the National Natural Science Foundation of China (31271575; 31200902), the Fundamental Research Funds for the Central Univ ersities (GK201103005), the Specialized Research Fund for the Doctoral Program of Higher Education from the Ministry of Education of China (20120202120009), the Scientific Research Foundation for the Returned Overseas Chinese Scholars, State Education Ministry, and the Natural Science Basic Research Plan in Shaanxi Province of China (2014JM3064). ","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"6","article_number":"e1191734"},{"author":[{"id":"2DB8F68A-F248-11E8-B48F-1D18A9856A87","first_name":"Hildegard","orcid":"0000-0001-9435-2813","full_name":"Uecker, Hildegard","last_name":"Uecker"},{"full_name":"Hermisson, Joachim","last_name":"Hermisson","first_name":"Joachim"}],"year":"2016","department":[{"_id":"NiBa"}],"day":"01","publisher":"Genetics Society of America","oa_version":"Preprint","doi":"10.1534/genetics.115.180299","quality_controlled":"1","language":[{"iso":"eng"}],"status":"public","abstract":[{"lang":"eng","text":"How likely is it that a population escapes extinction through adaptive evolution? The answer to this question is of great relevance in conservation biology, where we aim at species’ rescue and the maintenance of biodiversity, and in agriculture and medicine, where we seek to hamper the emergence of pesticide or drug resistance. By reshuffling the genome, recombination has two antagonistic effects on the probability of evolutionary rescue: It generates and it breaks up favorable gene combinations. Which of the two effects prevails depends on the fitness effects of mutations and on the impact of stochasticity on the allele frequencies. In this article, we analyze a mathematical model for rescue after a sudden environmental change when adaptation is contingent on mutations at two loci. The analysis reveals a complex nonlinear dependence of population survival on recombination. We moreover find that, counterintuitively, a fast eradication of the wild type can promote rescue in the presence of recombination. The model also shows that two-step rescue is not unlikely to happen and can even be more likely than single-step rescue (where adaptation relies on a single mutation), depending on the circumstances."}],"publication_status":"published","das_tickbox":"1","publist_id":"6091","ddc":["570"],"type":"journal_article","citation":{"ista":"Uecker H, Hermisson J. 2016. The role of recombination in evolutionary rescue. Genetics. 202(2), 721–732.","mla":"Uecker, Hildegard, and Joachim Hermisson. “The Role of Recombination in Evolutionary Rescue.” <i>Genetics</i>, vol. 202, no. 2, Genetics Society of America, 2016, pp. 721–32, doi:<a href=\"https://doi.org/10.1534/genetics.115.180299\">10.1534/genetics.115.180299</a>.","chicago":"Uecker, Hildegard, and Joachim Hermisson. “The Role of Recombination in Evolutionary Rescue.” <i>Genetics</i>. Genetics Society of America, 2016. <a href=\"https://doi.org/10.1534/genetics.115.180299\">https://doi.org/10.1534/genetics.115.180299</a>.","ama":"Uecker H, Hermisson J. The role of recombination in evolutionary rescue. <i>Genetics</i>. 2016;202(2):721-732. doi:<a href=\"https://doi.org/10.1534/genetics.115.180299\">10.1534/genetics.115.180299</a>","ieee":"H. Uecker and J. Hermisson, “The role of recombination in evolutionary rescue,” <i>Genetics</i>, vol. 202, no. 2. Genetics Society of America, pp. 721–732, 2016.","apa":"Uecker, H., &#38; Hermisson, J. (2016). The role of recombination in evolutionary rescue. <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.115.180299\">https://doi.org/10.1534/genetics.115.180299</a>","short":"H. Uecker, J. Hermisson, Genetics 202 (2016) 721–732."},"ec_funded":1,"date_published":"2016-02-01T00:00:00Z","article_processing_charge":"No","month":"02","date_updated":"2026-06-18T07:59:00Z","title":"The role of recombination in evolutionary rescue","date_created":"2018-12-11T11:50:54Z","project":[{"name":"Limits to selection in biology and in evolutionary computation","call_identifier":"FP7","_id":"25B07788-B435-11E9-9278-68D0E5697425","grant_number":"250152"},{"name":"L'OREAL Fellowship","_id":"25B67606-B435-11E9-9278-68D0E5697425"}],"_id":"1241","page":"721 - 732","publication":"Genetics","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"2","acknowledgement":"This work was made possible by a “For Women in Science” fellowship (L’Oréal Österreich in cooperation with the Austrian Commission for the United Nations Educational, Scientific, and Cultural Organization and the Austrian Academy of Sciences with financial support from the Federal Ministry for Science and Research Austria) and European Research Council grant 250152 (to Nick Barton).","intvolume":"       202","oa":1,"volume":202,"main_file_link":[{"url":"http://biorxiv.org/content/early/2015/07/06/022020.abstract","open_access":"1"}],"scopus_import":"1"},{"publisher":"Oxford University Press","doi":"10.1093/pcp/pcv087","oa_version":"None","author":[{"first_name":"Kaeli C.M.","last_name":"Johnson","full_name":"Johnson, Kaeli C.M."},{"first_name":"Shitou","full_name":"Xia, Shitou","last_name":"Xia"},{"orcid":"0000-0002-4008-1234","full_name":"Feng, Xiaoqi","last_name":"Feng","first_name":"Xiaoqi","id":"e0164712-22ee-11ed-b12a-d80fcdf35958"},{"first_name":"Xin","last_name":"Li","full_name":"Li, Xin"}],"year":"2015","department":[{"_id":"XiFe"}],"publication_identifier":{"issn":["0032-0781","1471-9053"]},"article_type":"original","type":"journal_article","citation":{"ama":"Johnson KCM, Xia S, Feng X, Li X. The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity. <i>Plant and Cell Physiology</i>. 2015;56(8):1616-1623. doi:<a href=\"https://doi.org/10.1093/pcp/pcv087\">10.1093/pcp/pcv087</a>","chicago":"Johnson, Kaeli C.M., Shitou Xia, Xiaoqi Feng, and Xin Li. “The Chromatin Remodeler SPLAYED Negatively Regulates SNC1-Mediated Immunity.” <i>Plant and Cell Physiology</i>. Oxford University Press, 2015. <a href=\"https://doi.org/10.1093/pcp/pcv087\">https://doi.org/10.1093/pcp/pcv087</a>.","ista":"Johnson KCM, Xia S, Feng X, Li X. 2015. The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity. Plant and Cell Physiology. 56(8), 1616–1623.","mla":"Johnson, Kaeli C. M., et al. “The Chromatin Remodeler SPLAYED Negatively Regulates SNC1-Mediated Immunity.” <i>Plant and Cell Physiology</i>, vol. 56, no. 8, Oxford University Press, 2015, pp. 1616–23, doi:<a href=\"https://doi.org/10.1093/pcp/pcv087\">10.1093/pcp/pcv087</a>.","apa":"Johnson, K. C. M., Xia, S., Feng, X., &#38; Li, X. (2015). The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity. <i>Plant and Cell Physiology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/pcp/pcv087\">https://doi.org/10.1093/pcp/pcv087</a>","short":"K.C.M. Johnson, S. Xia, X. Feng, X. Li, Plant and Cell Physiology 56 (2015) 1616–1623.","ieee":"K. C. M. Johnson, S. Xia, X. Feng, and X. Li, “The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity,” <i>Plant and Cell Physiology</i>, vol. 56, no. 8. Oxford University Press, pp. 1616–1623, 2015."},"quality_controlled":"1","abstract":[{"text":"SNC1 (SUPPRESSOR OF NPR1, CONSTITUTIVE 1) is one of a suite of intracellular Arabidopsis NOD-like receptor (NLR) proteins which, upon activation, result in the induction of defense responses. However, the molecular mechanisms underlying NLR activation and the subsequent provocation of immune responses are only partially characterized. To identify negative regulators of NLR-mediated immunity, a forward genetic screen was undertaken to search for enhancers of the dwarf, autoimmune gain-of-function snc1 mutant. To avoid lethality resulting from severe dwarfism, the screen was conducted using mos4 (modifier of snc1, 4) snc1 plants, which display wild-type-like morphology and resistance. M2 progeny were screened for mutant, snc1-enhancing (muse) mutants displaying a reversion to snc1-like phenotypes. The muse9 mos4 snc1 triple mutant was found to exhibit dwarf morphology, elevated expression of the pPR2-GUS defense marker reporter gene and enhanced resistance to the oomycete pathogen Hyaloperonospora arabidopsidis Noco2. Via map-based cloning and Illumina sequencing, it was determined that the muse9 mutation is in the gene encoding the SWI/SNF chromatin remodeler SYD (SPLAYED), and was thus renamed syd-10. The syd-10 single mutant has no observable alteration from wild-type-like resistance, although the syd-4 T-DNA insertion allele displays enhanced resistance to the bacterial pathogen Pseudomonas syringae pv. maculicola ES4326. Transcription of SNC1 is increased in both syd-4 and syd-10. These data suggest that SYD plays a subtle, specific role in the regulation of SNC1 expression and SNC1-mediated immunity. SYD may work with other proteins at the chromatin level to repress SNC1 transcription; such regulation is important for fine-tuning the expression of NLR-encoding genes to prevent unpropitious autoimmunity.","lang":"eng"}],"publication_status":"published","language":[{"iso":"eng"}],"status":"public","pmid":1,"_id":"12196","date_created":"2023-01-16T09:20:22Z","external_id":{"pmid":["26063389"]},"publication":"Plant and Cell Physiology","page":"1616-1623","date_published":"2015-08-01T00:00:00Z","article_processing_charge":"No","keyword":["Cell Biology","Plant Science","Physiology","General Medicine"],"date_updated":"2023-05-08T11:03:23Z","title":"The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity","month":"08","scopus_import":"1","extern":"1","acknowledgement":"This work was supported by the National Sciences and Engineering Research Council of Canada [Canada Graduate\r\nScholarship–Doctoral to K.J.; Discovery Grant to X.L.]; the department of Botany at the University of f British Columbia\r\n[the Dewar Cooper Memorial Fund to X.L.].The authors would like to thank Dr. Yuelin Zhang and Ms. Yan Li for their assistance with next-generation sequencing, and Mr. Charles Copeland for critical reading of the manuscript.","issue":"8","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"        56","volume":56},{"scopus_import":"1","oa":1,"acknowledgement":"This work was supported by the DFG (SPP 1527) and the EU (FP7, REA grant no 291734).","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Proceedings of the 13th European Conference on Artificial Life","file_date_updated":"2023-05-02T07:02:59Z","page":"78","_id":"12881","project":[{"name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","call_identifier":"FP7"}],"date_created":"2023-04-30T22:01:07Z","date_updated":"2023-05-02T07:06:21Z","title":"Quantifying self-organizing behavior of autonomous robots","month":"07","article_processing_charge":"No","date_published":"2015-07-01T00:00:00Z","ec_funded":1,"file":[{"date_created":"2023-05-02T07:02:59Z","creator":"dernst","file_id":"12882","file_name":"2015_ECAL_Martius.pdf","success":1,"access_level":"open_access","checksum":"880eabe59c9df12f06a882aa1bc4e600","relation":"main_file","date_updated":"2023-05-02T07:02:59Z","content_type":"application/pdf","file_size":1674241}],"type":"conference","citation":{"ieee":"G. S. Martius and E. Olbrich, “Quantifying self-organizing behavior of autonomous robots,” in <i>Proceedings of the 13th European Conference on Artificial Life</i>, York, United Kingdom, 2015, p. 78.","apa":"Martius, G. S., &#38; Olbrich, E. (2015). Quantifying self-organizing behavior of autonomous robots. In <i>Proceedings of the 13th European Conference on Artificial Life</i> (p. 78). York, United Kingdom: MIT Press. <a href=\"https://doi.org/10.7551/978-0-262-33027-5-ch018\">https://doi.org/10.7551/978-0-262-33027-5-ch018</a>","short":"G.S. Martius, E. Olbrich, in:, Proceedings of the 13th European Conference on Artificial Life, MIT Press, 2015, p. 78.","ista":"Martius GS, Olbrich E. 2015. Quantifying self-organizing behavior of autonomous robots. Proceedings of the 13th European Conference on Artificial Life. ECAL: European Conference on Artificial Life, 78.","mla":"Martius, Georg S., and Eckehard Olbrich. “Quantifying Self-Organizing Behavior of Autonomous Robots.” <i>Proceedings of the 13th European Conference on Artificial Life</i>, MIT Press, 2015, p. 78, doi:<a href=\"https://doi.org/10.7551/978-0-262-33027-5-ch018\">10.7551/978-0-262-33027-5-ch018</a>.","chicago":"Martius, Georg S, and Eckehard Olbrich. “Quantifying Self-Organizing Behavior of Autonomous Robots.” In <i>Proceedings of the 13th European Conference on Artificial Life</i>, 78. MIT Press, 2015. <a href=\"https://doi.org/10.7551/978-0-262-33027-5-ch018\">https://doi.org/10.7551/978-0-262-33027-5-ch018</a>.","ama":"Martius GS, Olbrich E. Quantifying self-organizing behavior of autonomous robots. In: <i>Proceedings of the 13th European Conference on Artificial Life</i>. MIT Press; 2015:78. doi:<a href=\"https://doi.org/10.7551/978-0-262-33027-5-ch018\">10.7551/978-0-262-33027-5-ch018</a>"},"ddc":["000"],"publication_status":"published","has_accepted_license":"1","status":"public","language":[{"iso":"eng"}],"quality_controlled":"1","doi":"10.7551/978-0-262-33027-5-ch018","oa_version":"Published Version","publisher":"MIT Press","day":"01","publication_identifier":{"isbn":["9780262330275"]},"department":[{"_id":"ChLa"}],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"conference":{"name":"ECAL: European Conference on Artificial Life","end_date":"2015-07-24","location":"York, United Kingdom","start_date":"2015-07-20"},"year":"2015","author":[{"full_name":"Martius, Georg S","last_name":"Martius","id":"3A276B68-F248-11E8-B48F-1D18A9856A87","first_name":"Georg S"},{"first_name":"Eckehard","full_name":"Olbrich, Eckehard","last_name":"Olbrich"}]},{"publist_id":"6851","volume":25,"publication_status":"published","abstract":[{"text":"Glycoinositolphosphoceramides (GIPCs) are complex sphingolipids present at the plasma membrane of various eukaryotes with the important exception of mammals. In fungi, these glycosphingolipids commonly contain an alpha-mannose residue (Man) linked at position 2 of the inositol. However, several pathogenic fungi additionally synthesize zwitterionic GIPCs carrying an alpha-glucosamine residue (GlcN) at this position. In the human pathogen Aspergillus fumigatus, the GlcNalpha1,2IPC core (where IPC is inositolphosphoceramide) is elongated to Manalpha1,3Manalpha1,6GlcNalpha1,2IPC, which is the most abundant GIPC synthesized by this fungus. In this study, we identified an A. fumigatus N-acetylglucosaminyltransferase, named GntA, and demonstrate its involvement in the initiation of zwitterionic GIPC biosynthesis. Targeted deletion of the gene encoding GntA in A. fumigatus resulted in complete absence of zwitterionic GIPC; a phenotype that could be reverted by episomal expression of GntA in the mutant. The N-acetylhexosaminyltransferase activity of GntA was substantiated by production of N-acetylhexosamine-IPC in the yeast Saccharomyces cerevisiae upon GntA expression. Using an in vitro assay, GntA was furthermore shown to use UDP-N-acetylglucosamine as donor substrate to generate a glycolipid product resistant to saponification and to digestion by phosphatidylinositol-phospholipase C as expected for GlcNAcalpha1,2IPC. Finally, as the enzymes involved in mannosylation of IPC, GntA was localized to the Golgi apparatus, the site of IPC synthesis.","lang":"eng"}],"pmid":1,"status":"public","language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"        25","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"12","type":"journal_article","citation":{"ieee":"J. Engel, P. S. Schmalhorst, A. Kruger, C. Muller, F. Buettner, and F. Routier, “Characterization of an N-acetylglucosaminyltransferase involved in Aspergillus fumigatus zwitterionic glycoinositolphosphoceramide biosynthesis,” <i>Glycobiology</i>, vol. 25, no. 12. Oxford University Press, pp. 1423–1430, 2015.","short":"J. Engel, P.S. Schmalhorst, A. Kruger, C. Muller, F. Buettner, F. Routier, Glycobiology 25 (2015) 1423–1430.","apa":"Engel, J., Schmalhorst, P. S., Kruger, A., Muller, C., Buettner, F., &#38; Routier, F. (2015). Characterization of an N-acetylglucosaminyltransferase involved in Aspergillus fumigatus zwitterionic glycoinositolphosphoceramide biosynthesis. <i>Glycobiology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/glycob/cwv059\">https://doi.org/10.1093/glycob/cwv059</a>","mla":"Engel, Jakob, et al. “Characterization of an N-Acetylglucosaminyltransferase Involved in Aspergillus Fumigatus Zwitterionic Glycoinositolphosphoceramide Biosynthesis.” <i>Glycobiology</i>, vol. 25, no. 12, Oxford University Press, 2015, pp. 1423–30, doi:<a href=\"https://doi.org/10.1093/glycob/cwv059\">10.1093/glycob/cwv059</a>.","ista":"Engel J, Schmalhorst PS, Kruger A, Muller C, Buettner F, Routier F. 2015. Characterization of an N-acetylglucosaminyltransferase involved in Aspergillus fumigatus zwitterionic glycoinositolphosphoceramide biosynthesis. Glycobiology. 25(12), 1423–1430.","ama":"Engel J, Schmalhorst PS, Kruger A, Muller C, Buettner F, Routier F. Characterization of an N-acetylglucosaminyltransferase involved in Aspergillus fumigatus zwitterionic glycoinositolphosphoceramide biosynthesis. <i>Glycobiology</i>. 2015;25(12):1423-1430. doi:<a href=\"https://doi.org/10.1093/glycob/cwv059\">10.1093/glycob/cwv059</a>","chicago":"Engel, Jakob, Philipp S Schmalhorst, Anke Kruger, Christina Muller, Falk Buettner, and Françoise Routier. “Characterization of an N-Acetylglucosaminyltransferase Involved in Aspergillus Fumigatus Zwitterionic Glycoinositolphosphoceramide Biosynthesis.” <i>Glycobiology</i>. Oxford University Press, 2015. <a href=\"https://doi.org/10.1093/glycob/cwv059\">https://doi.org/10.1093/glycob/cwv059</a>."},"scopus_import":1,"department":[{"_id":"CaHe"}],"title":"Characterization of an N-acetylglucosaminyltransferase involved in Aspergillus fumigatus zwitterionic glycoinositolphosphoceramide biosynthesis","date_updated":"2021-01-12T08:16:33Z","month":"12","year":"2015","author":[{"full_name":"Engel, Jakob","last_name":"Engel","first_name":"Jakob"},{"orcid":"0000-0002-5795-0133","full_name":"Schmalhorst, Philipp S","last_name":"Schmalhorst","first_name":"Philipp S","id":"309D50DA-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Kruger","full_name":"Kruger, Anke","first_name":"Anke"},{"last_name":"Muller","full_name":"Muller, Christina","first_name":"Christina"},{"first_name":"Falk","full_name":"Buettner, Falk","last_name":"Buettner"},{"full_name":"Routier, Françoise","last_name":"Routier","first_name":"Françoise"}],"date_published":"2015-12-01T00:00:00Z","doi":"10.1093/glycob/cwv059","publication":"Glycobiology","page":"1423 - 1430","oa_version":"None","_id":"802","publisher":"Oxford University Press","day":"01","external_id":{"pmid":["26306635"]},"date_created":"2018-12-11T11:48:35Z"},{"oa_version":"Preprint","arxiv":1,"publication":"arXiv","date_created":"2020-07-30T10:45:19Z","day":"15","external_id":{"arxiv":["1511.03501"]},"_id":"8183","month":"11","title":"Eliminating higher-multiplicity intersections, III. Codimension 2","date_updated":"2023-09-07T13:12:17Z","department":[{"_id":"UlWa"}],"author":[{"full_name":"Avvakumov, Sergey","last_name":"Avvakumov","id":"3827DAC8-F248-11E8-B48F-1D18A9856A87","first_name":"Sergey"},{"last_name":"Mabillard","full_name":"Mabillard, Isaac","first_name":"Isaac","id":"32BF9DAA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Skopenkov, A.","last_name":"Skopenkov","first_name":"A."},{"last_name":"Wagner","orcid":"0000-0002-1494-0568","full_name":"Wagner, Uli","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","first_name":"Uli"}],"date_published":"2015-11-15T00:00:00Z","year":"2015","article_processing_charge":"No","type":"preprint","citation":{"apa":"Avvakumov, S., Mabillard, I., Skopenkov, A., &#38; Wagner, U. (n.d.). Eliminating higher-multiplicity intersections, III. Codimension 2. <i>arXiv</i>.","short":"S. Avvakumov, I. Mabillard, A. Skopenkov, U. Wagner, ArXiv (n.d.).","ieee":"S. Avvakumov, I. Mabillard, A. Skopenkov, and U. Wagner, “Eliminating higher-multiplicity intersections, III. Codimension 2,” <i>arXiv</i>. .","ama":"Avvakumov S, Mabillard I, Skopenkov A, Wagner U. Eliminating higher-multiplicity intersections, III. Codimension 2. <i>arXiv</i>.","chicago":"Avvakumov, Sergey, Isaac Mabillard, A. Skopenkov, and Uli Wagner. “Eliminating Higher-Multiplicity Intersections, III. Codimension 2.” <i>ArXiv</i>, n.d.","mla":"Avvakumov, Sergey, et al. “Eliminating Higher-Multiplicity Intersections, III. Codimension 2.” <i>ArXiv</i>, 1511.03501.","ista":"Avvakumov S, Mabillard I, Skopenkov A, Wagner U. Eliminating higher-multiplicity intersections, III. Codimension 2. arXiv, 1511.03501."},"language":[{"iso":"eng"}],"status":"public","abstract":[{"lang":"eng","text":"We study conditions under which a finite simplicial complex $K$ can be mapped to $\\mathbb R^d$ without higher-multiplicity intersections. An almost $r$-embedding is a map $f: K\\to \\mathbb R^d$ such that the images of any $r$\r\npairwise disjoint simplices of $K$ do not have a common point. We show that if $r$ is not a prime power and $d\\geq 2r+1$, then there is a counterexample to the topological Tverberg conjecture, i.e., there is an almost $r$-embedding of\r\nthe $(d+1)(r-1)$-simplex in $\\mathbb R^d$. This improves on previous constructions of counterexamples (for $d\\geq 3r$) based on a series of papers by M. \\\"Ozaydin, M. Gromov, P. Blagojevi\\'c, F. Frick, G. Ziegler, and the second and fourth present authors. The counterexamples are obtained by proving the following algebraic criterion in codimension 2: If $r\\ge3$ and if $K$ is a finite $2(r-1)$-complex then there exists an almost $r$-embedding $K\\to \\mathbb R^{2r}$ if and only if there exists a general position PL map $f:K\\to \\mathbb R^{2r}$ such that the algebraic intersection number of the $f$-images of any $r$ pairwise disjoint simplices of $K$ is zero. This result can be restated in terms of cohomological obstructions or equivariant maps, and extends an analogous codimension 3 criterion by the second and fourth authors. As another application we classify ornaments $f:S^3 \\sqcup S^3\\sqcup S^3\\to \\mathbb R^5$ up to ornament\r\nconcordance. It follows from work of M. Freedman, V. Krushkal and P. Teichner that the analogous criterion for $r=2$ is false. We prove a lemma on singular higher-dimensional Borromean rings, yielding an elementary proof of the counterexample."}],"publication_status":"submitted","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1511.03501"}],"related_material":{"record":[{"id":"9308","status":"public","relation":"later_version"},{"id":"10220","relation":"later_version","status":"public"},{"id":"8156","relation":"dissertation_contains","status":"public"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We would like to thank A. Klyachko, V. Krushkal, S. Melikhov, M. Tancer, P. Teichner and anonymous referees for helpful discussions.","oa":1,"article_number":"1511.03501"}]