[{"author":[{"full_name":"Chen, Chong","id":"3DFD581A-F248-11E8-B48F-1D18A9856A87","last_name":"Chen","first_name":"Chong"},{"id":"32A73F6C-F248-11E8-B48F-1D18A9856A87","full_name":"Arai, Itaru","first_name":"Itaru","last_name":"Arai"},{"first_name":"Rachel","last_name":"Satterield","full_name":"Satterield, Rachel"},{"full_name":"Young, Samuel","last_name":"Young","first_name":"Samuel"},{"orcid":"0000-0001-5001-4804","first_name":"Peter M","last_name":"Jonas","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","full_name":"Jonas, Peter M"}],"date_published":"2017-01-17T00:00:00Z","volume":18,"abstract":[{"lang":"eng","text":"GABAergic synapses in brain circuits generate inhibitory output signals with submillisecond latency and temporal precision. Whether the molecular identity of the release sensor contributes to these signaling properties remains unclear. Here, we examined the Ca^2+ sensor of exocytosis at GABAergic basket cell (BC) to Purkinje cell (PC) synapses in cerebellum. Immunolabeling suggested that BC terminals selectively expressed synaptotagmin 2 (Syt2), whereas synaptotagmin 1 (Syt1) was enriched in excitatory terminals. Genetic elimination of Syt2 reduced action potential-evoked release to ∼10%, identifying Syt2 as the major Ca^2+ sensor at BC-PC synapses. Differential adenovirus-mediated rescue revealed that Syt2 triggered release with shorter latency and higher temporal precision and mediated faster vesicle pool replenishment than Syt1. Furthermore, deletion of Syt2 severely reduced and delayed disynaptic inhibition following parallel fiber stimulation. Thus, the selective use of Syt2 as release sensor at BC-PC synapses ensures fast and efficient feedforward inhibition in cerebellar microcircuits. #bioimagingfacility-author"}],"file_date_updated":"2018-12-12T10:16:09Z","issue":"3","ec_funded":1,"publication":"Cell Reports","year":"2017","language":[{"iso":"eng"}],"day":"17","scopus_import":"1","publisher":"Cell Press","file":[{"date_created":"2018-12-12T10:16:09Z","creator":"system","relation":"main_file","file_id":"5195","file_name":"IST-2017-751-v1+1_1-s2.0-S2211124716317740-main.pdf","file_size":4427591,"access_level":"open_access","date_updated":"2018-12-12T10:16:09Z","content_type":"application/pdf"}],"project":[{"name":"Mechanisms of transmitter release at GABAergic synapses","_id":"25C26B1E-B435-11E9-9278-68D0E5697425","grant_number":"P24909-B24","call_identifier":"FWF"},{"call_identifier":"FP7","grant_number":"268548","name":"Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons","_id":"25C0F108-B435-11E9-9278-68D0E5697425"}],"date_created":"2018-12-11T11:50:14Z","has_accepted_license":"1","oa":1,"publication_status":"published","publication_identifier":{"issn":["22111247"]},"ddc":["571"],"date_updated":"2023-09-20T11:32:15Z","month":"01","oa_version":"Published Version","related_material":{"record":[{"status":"public","id":"324","relation":"dissertation_contains"}]},"publist_id":"6245","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"title":"Synaptotagmin 2 is the fast Ca2+ sensor at a central inhibitory synapse","pubrep_id":"751","type":"journal_article","status":"public","citation":{"mla":"Chen, Chong, et al. “Synaptotagmin 2 Is the Fast Ca2+ Sensor at a Central Inhibitory Synapse.” <i>Cell Reports</i>, vol. 18, no. 3, Cell Press, 2017, pp. 723–36, doi:<a href=\"https://doi.org/10.1016/j.celrep.2016.12.067\">10.1016/j.celrep.2016.12.067</a>.","apa":"Chen, C., Arai,  itaru, Satterield, R., Young, S., &#38; Jonas, P. M. (2017). Synaptotagmin 2 is the fast Ca2+ sensor at a central inhibitory synapse. <i>Cell Reports</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.celrep.2016.12.067\">https://doi.org/10.1016/j.celrep.2016.12.067</a>","ama":"Chen C, Arai  itaru, Satterield R, Young S, Jonas PM. Synaptotagmin 2 is the fast Ca2+ sensor at a central inhibitory synapse. <i>Cell Reports</i>. 2017;18(3):723-736. doi:<a href=\"https://doi.org/10.1016/j.celrep.2016.12.067\">10.1016/j.celrep.2016.12.067</a>","chicago":"Chen, Chong, itaru Arai, Rachel Satterield, Samuel Young, and Peter M Jonas. “Synaptotagmin 2 Is the Fast Ca2+ Sensor at a Central Inhibitory Synapse.” <i>Cell Reports</i>. Cell Press, 2017. <a href=\"https://doi.org/10.1016/j.celrep.2016.12.067\">https://doi.org/10.1016/j.celrep.2016.12.067</a>.","short":"C. Chen,  itaru Arai, R. Satterield, S. Young, P.M. Jonas, Cell Reports 18 (2017) 723–736.","ista":"Chen C, Arai  itaru, Satterield R, Young S, Jonas PM. 2017. Synaptotagmin 2 is the fast Ca2+ sensor at a central inhibitory synapse. Cell Reports. 18(3), 723–736.","ieee":"C. Chen,  itaru Arai, R. Satterield, S. Young, and P. M. Jonas, “Synaptotagmin 2 is the fast Ca2+ sensor at a central inhibitory synapse,” <i>Cell Reports</i>, vol. 18, no. 3. Cell Press, pp. 723–736, 2017."},"article_processing_charge":"No","acknowledged_ssus":[{"_id":"Bio"},{"_id":"PreCl"}],"isi":1,"quality_controlled":"1","department":[{"_id":"PeJo"}],"external_id":{"isi":["000396470600013"]},"doi":"10.1016/j.celrep.2016.12.067","intvolume":"        18","page":"723 - 736","_id":"1117"},{"author":[{"full_name":"Gan, Jian","id":"3614E438-F248-11E8-B48F-1D18A9856A87","first_name":"Jian","last_name":"Gan"},{"last_name":"Weng","first_name":"Shih-Ming","id":"2F9C5AC8-F248-11E8-B48F-1D18A9856A87","full_name":"Weng, Shih-Ming"},{"first_name":"Alejandro","last_name":"Pernia-Andrade","id":"36963E98-F248-11E8-B48F-1D18A9856A87","full_name":"Pernia-Andrade, Alejandro"},{"full_name":"Csicsvari, Jozsef L","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","last_name":"Csicsvari","first_name":"Jozsef L","orcid":"0000-0002-5193-4036"},{"first_name":"Peter M","last_name":"Jonas","orcid":"0000-0001-5001-4804","full_name":"Jonas, Peter M","id":"353C1B58-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2017-01-18T00:00:00Z","volume":93,"abstract":[{"text":"Sharp wave-ripple (SWR) oscillations play a key role in memory consolidation during non-rapid eye movement sleep, immobility, and consummatory behavior. However, whether temporally modulated synaptic excitation or inhibition underlies the ripples is controversial. To address this question, we performed simultaneous recordings of excitatory and inhibitory postsynaptic currents (EPSCs and IPSCs) and local field potentials (LFPs) in the CA1 region of awake mice in vivo. During SWRs, inhibition dominated over excitation, with a peak conductance ratio of 4.1 ± 0.5. Furthermore, the amplitude of SWR-associated IPSCs was positively correlated with SWR magnitude, whereas that of EPSCs was not. Finally, phase analysis indicated that IPSCs were phase-locked to individual ripple cycles, whereas EPSCs were uniformly distributed in phase space. Optogenetic inhibition indicated that PV+ interneurons provided a major contribution to SWR-associated IPSCs. Thus, phasic inhibition, but not excitation, shapes SWR oscillations in the hippocampal CA1 region in vivo.","lang":"eng"}],"file_date_updated":"2018-12-12T10:08:56Z","issue":"2","ec_funded":1,"publication":"Neuron","year":"2017","language":[{"iso":"eng"}],"day":"18","scopus_import":"1","publisher":"Elsevier","file":[{"file_id":"4719","relation":"main_file","date_created":"2018-12-12T10:08:56Z","creator":"system","content_type":"application/pdf","date_updated":"2018-12-12T10:08:56Z","access_level":"open_access","file_size":2738950,"file_name":"IST-2017-752-v1+1_1-s2.0-S0896627316309606-main.pdf"}],"project":[{"name":"Mechanisms of transmitter release at GABAergic synapses","_id":"25C26B1E-B435-11E9-9278-68D0E5697425","grant_number":"P24909-B24","call_identifier":"FWF"},{"call_identifier":"FP7","grant_number":"268548","name":"Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons","_id":"25C0F108-B435-11E9-9278-68D0E5697425"}],"date_created":"2018-12-11T11:50:15Z","has_accepted_license":"1","oa":1,"publication_status":"published","date_updated":"2023-09-20T11:31:48Z","ddc":["571"],"month":"01","oa_version":"Published Version","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publist_id":"6244","title":"Phase-locked inhibition, but not excitation, underlies hippocampal ripple oscillations in awake mice in vivo","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"pubrep_id":"752","type":"journal_article","status":"public","citation":{"chicago":"Gan, Jian, Shih-Ming Weng, Alejandro Pernia-Andrade, Jozsef L Csicsvari, and Peter M Jonas. “Phase-Locked Inhibition, but Not Excitation, Underlies Hippocampal Ripple Oscillations in Awake Mice in Vivo.” <i>Neuron</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.neuron.2016.12.018\">https://doi.org/10.1016/j.neuron.2016.12.018</a>.","short":"J. Gan, S.-M. Weng, A. Pernia-Andrade, J.L. Csicsvari, P.M. Jonas, Neuron 93 (2017) 308–314.","ama":"Gan J, Weng S-M, Pernia-Andrade A, Csicsvari JL, Jonas PM. Phase-locked inhibition, but not excitation, underlies hippocampal ripple oscillations in awake mice in vivo. <i>Neuron</i>. 2017;93(2):308-314. doi:<a href=\"https://doi.org/10.1016/j.neuron.2016.12.018\">10.1016/j.neuron.2016.12.018</a>","mla":"Gan, Jian, et al. “Phase-Locked Inhibition, but Not Excitation, Underlies Hippocampal Ripple Oscillations in Awake Mice in Vivo.” <i>Neuron</i>, vol. 93, no. 2, Elsevier, 2017, pp. 308–14, doi:<a href=\"https://doi.org/10.1016/j.neuron.2016.12.018\">10.1016/j.neuron.2016.12.018</a>.","apa":"Gan, J., Weng, S.-M., Pernia-Andrade, A., Csicsvari, J. L., &#38; Jonas, P. M. (2017). Phase-locked inhibition, but not excitation, underlies hippocampal ripple oscillations in awake mice in vivo. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2016.12.018\">https://doi.org/10.1016/j.neuron.2016.12.018</a>","ista":"Gan J, Weng S-M, Pernia-Andrade A, Csicsvari JL, Jonas PM. 2017. Phase-locked inhibition, but not excitation, underlies hippocampal ripple oscillations in awake mice in vivo. Neuron. 93(2), 308–314.","ieee":"J. Gan, S.-M. Weng, A. Pernia-Andrade, J. L. Csicsvari, and P. M. Jonas, “Phase-locked inhibition, but not excitation, underlies hippocampal ripple oscillations in awake mice in vivo,” <i>Neuron</i>, vol. 93, no. 2. Elsevier, pp. 308–314, 2017."},"article_processing_charge":"No","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"ScienComp"},{"_id":"PreCl"}],"isi":1,"quality_controlled":"1","department":[{"_id":"PeJo"},{"_id":"JoCs"}],"external_id":{"isi":["000396428200010"]},"doi":"10.1016/j.neuron.2016.12.018","intvolume":"        93","_id":"1118","page":"308 - 314"},{"issue":"9","volume":118,"abstract":[{"text":"Understanding the behavior of molecules interacting with superfluid helium represents a formidable challenge and, in general, requires approaches relying on large-scale numerical simulations. Here we demonstrate that experimental data collected over the last 20 years provide evidence that molecules immersed in superfluid helium form recently-predicted angulon quasiparticles [Phys. Rev. Lett. 114, 203001 (2015)]. Most importantly, casting the many-body problem in terms of angulons amounts to a drastic simplification and yields effective molecular moments of inertia as straightforward analytic solutions of a simple microscopic Hamiltonian. The outcome of the angulon theory is in good agreement with experiment for a broad range of molecular impurities, from heavy to medium-mass to light species. These results pave the way to understanding molecular rotation in liquid and crystalline phases in terms of the angulon quasiparticle.","lang":"eng"}],"date_published":"2017-02-27T00:00:00Z","author":[{"id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Lemeshko, Mikhail","first_name":"Mikhail","last_name":"Lemeshko","orcid":"0000-0002-6990-7802"}],"day":"27","language":[{"iso":"eng"}],"year":"2017","publication":"Physical Review Letters","publisher":"American Physical Society","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1610.01604"}],"project":[{"grant_number":"11-NSF-1070","name":"ROOTS Genome-wide Analysis of Root Traits","_id":"25636330-B435-11E9-9278-68D0E5697425"}],"date_created":"2018-12-11T11:50:15Z","article_number":"095301","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publist_id":"6243","oa_version":"Submitted Version","month":"02","date_updated":"2023-09-20T11:31:22Z","publication_identifier":{"issn":["00319007"]},"publication_status":"published","oa":1,"isi":1,"citation":{"ista":"Lemeshko M. 2017. Quasiparticle approach to molecules interacting with quantum solvents. Physical Review Letters. 118(9), 095301.","ieee":"M. Lemeshko, “Quasiparticle approach to molecules interacting with quantum solvents,” <i>Physical Review Letters</i>, vol. 118, no. 9. American Physical Society, 2017.","chicago":"Lemeshko, Mikhail. “Quasiparticle Approach to Molecules Interacting with Quantum Solvents.” <i>Physical Review Letters</i>. American Physical Society, 2017. <a href=\"https://doi.org/10.1103/PhysRevLett.118.095301\">https://doi.org/10.1103/PhysRevLett.118.095301</a>.","ama":"Lemeshko M. Quasiparticle approach to molecules interacting with quantum solvents. <i>Physical Review Letters</i>. 2017;118(9). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.118.095301\">10.1103/PhysRevLett.118.095301</a>","short":"M. Lemeshko, Physical Review Letters 118 (2017).","apa":"Lemeshko, M. (2017). Quasiparticle approach to molecules interacting with quantum solvents. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.118.095301\">https://doi.org/10.1103/PhysRevLett.118.095301</a>","mla":"Lemeshko, Mikhail. “Quasiparticle Approach to Molecules Interacting with Quantum Solvents.” <i>Physical Review Letters</i>, vol. 118, no. 9, 095301, American Physical Society, 2017, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.118.095301\">10.1103/PhysRevLett.118.095301</a>."},"article_processing_charge":"No","status":"public","type":"journal_article","title":"Quasiparticle approach to molecules interacting with quantum solvents","_id":"1119","intvolume":"       118","doi":"10.1103/PhysRevLett.118.095301","external_id":{"isi":["000404769200006"]},"department":[{"_id":"MiLe"}],"quality_controlled":"1"},{"date_created":"2018-12-11T11:50:15Z","project":[{"_id":"25C6DC12-B435-11E9-9278-68D0E5697425","name":"Analysis of quantum many-body systems","grant_number":"694227","call_identifier":"H2020"},{"call_identifier":"FWF","grant_number":"P27533_N27","_id":"25C878CE-B435-11E9-9278-68D0E5697425","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems"},{"call_identifier":"FWF","grant_number":"P29902","_id":"26031614-B435-11E9-9278-68D0E5697425","name":"Quantum rotations in the presence of a many-body environment"}],"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1610.04908"}],"publisher":"American Physical Society","scopus_import":"1","publication":"Physical Review A","language":[{"iso":"eng"}],"year":"2017","day":"06","ec_funded":1,"issue":"3","author":[{"last_name":"Li","first_name":"Xiang","full_name":"Li, Xiang","id":"4B7E523C-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Seiringer, Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","first_name":"Robert","last_name":"Seiringer"},{"id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Lemeshko, Mikhail","orcid":"0000-0002-6990-7802","first_name":"Mikhail","last_name":"Lemeshko"}],"date_published":"2017-03-06T00:00:00Z","abstract":[{"lang":"eng","text":"The existence of a self-localization transition in the polaron problem has been under an active debate ever since Landau suggested it 83 years ago. Here we reveal the self-localization transition for the rotational analogue of the polaron -- the angulon quasiparticle. We show that, unlike for the polarons, self-localization of angulons occurs at finite impurity-bath coupling already at the mean-field level. The transition is accompanied by the spherical-symmetry breaking of the angulon ground state and a discontinuity in the first derivative of the ground-state energy. Moreover, the type of the symmetry breaking is dictated by the symmetry of the microscopic impurity-bath interaction, which leads to a number of distinct self-localized states. The predicted effects can potentially be addressed in experiments on cold molecules trapped in superfluid helium droplets and ultracold quantum gases, as well as on electronic excitations in solids and Bose-Einstein condensates. "}],"volume":95,"external_id":{"isi":["000395981900009"]},"doi":"10.1103/PhysRevA.95.033608","intvolume":"        95","_id":"1120","quality_controlled":"1","department":[{"_id":"MiLe"},{"_id":"RoSe"}],"citation":{"ista":"Li X, Seiringer R, Lemeshko M. 2017. Angular self-localization of impurities rotating in a bosonic bath. Physical Review A. 95(3), 033608.","ieee":"X. Li, R. Seiringer, and M. Lemeshko, “Angular self-localization of impurities rotating in a bosonic bath,” <i>Physical Review A</i>, vol. 95, no. 3. American Physical Society, 2017.","mla":"Li, Xiang, et al. “Angular Self-Localization of Impurities Rotating in a Bosonic Bath.” <i>Physical Review A</i>, vol. 95, no. 3, 033608, American Physical Society, 2017, doi:<a href=\"https://doi.org/10.1103/PhysRevA.95.033608\">10.1103/PhysRevA.95.033608</a>.","apa":"Li, X., Seiringer, R., &#38; Lemeshko, M. (2017). Angular self-localization of impurities rotating in a bosonic bath. <i>Physical Review A</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.95.033608\">https://doi.org/10.1103/PhysRevA.95.033608</a>","short":"X. Li, R. Seiringer, M. Lemeshko, Physical Review A 95 (2017).","chicago":"Li, Xiang, Robert Seiringer, and Mikhail Lemeshko. “Angular Self-Localization of Impurities Rotating in a Bosonic Bath.” <i>Physical Review A</i>. American Physical Society, 2017. <a href=\"https://doi.org/10.1103/PhysRevA.95.033608\">https://doi.org/10.1103/PhysRevA.95.033608</a>.","ama":"Li X, Seiringer R, Lemeshko M. Angular self-localization of impurities rotating in a bosonic bath. <i>Physical Review A</i>. 2017;95(3). doi:<a href=\"https://doi.org/10.1103/PhysRevA.95.033608\">10.1103/PhysRevA.95.033608</a>"},"article_processing_charge":"No","isi":1,"title":"Angular self-localization of impurities rotating in a bosonic bath","status":"public","type":"journal_article","month":"03","oa_version":"Published Version","publist_id":"6242","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","related_material":{"record":[{"relation":"dissertation_contains","id":"8958","status":"public"}]},"oa":1,"publication_status":"published","publication_identifier":{"issn":["24699926"]},"date_updated":"2023-09-20T11:30:58Z","article_number":"033608"},{"date_created":"2018-12-11T11:50:17Z","supervisor":[{"orcid":"0000-0002-8302-7596","first_name":"Jiří","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří"}],"file":[{"creator":"dernst","date_created":"2019-04-05T08:45:14Z","checksum":"d192c7c6c5ea32c8432437286dc4909e","relation":"main_file","file_id":"6209","file_name":"IST_Austria_Thesis_Tomáš_Prát.pdf","access_level":"closed","file_size":10285946,"date_updated":"2019-04-05T08:45:14Z","content_type":"application/pdf"},{"checksum":"bab18b52cf98145926042d8ed99fdb3b","relation":"main_file","date_created":"2021-02-22T11:52:56Z","creator":"dernst","file_id":"9185","file_size":9802991,"access_level":"open_access","file_name":"2017_Thesis_Prat.pdf","content_type":"application/pdf","date_updated":"2021-02-22T11:52:56Z","success":1}],"publisher":"Institute of Science and Technology Austria","year":"2017","language":[{"iso":"eng"}],"day":"12","author":[{"id":"3DA3BFEE-F248-11E8-B48F-1D18A9856A87","full_name":"Prat, Tomas","last_name":"Prat","first_name":"Tomas"}],"date_published":"2017-01-12T00:00:00Z","abstract":[{"lang":"eng","text":"Plant hormone auxin and its transport between cells belong to the most important\r\nmechanisms controlling plant development. Auxin itself could change localization of PINs and\r\nthereby control direction of its own flow. We performed an expression profiling experiment\r\nin Arabidopsis roots to identify potential regulators of PIN polarity which are transcriptionally\r\nregulated by auxin signalling. We identified several novel regulators and performed a detailed\r\ncharacterization of the transcription factor WRKY23 (At2g47260) and its role in auxin\r\nfeedback on PIN polarity. Gain-of-function and dominant-negative mutants revealed that\r\nWRKY23 plays a crucial role in mediating the auxin effect on PIN polarity. In concordance,\r\ntypical polar auxin transport processes such as gravitropism and leaf vascular pattern\r\nformation were disturbed by interfering with WRKY23 function.\r\nIn order to identify direct targets of WRKY23, we performed consequential expression\r\nprofiling experiments using a WRKY23 inducible gain-of-function line and dominant-negative\r\nWRKY23 line that is defunct in PIN re-arrangement. Among several genes mostly related to\r\nthe groups of cell wall and defense process regulators, we identified LYSINE-HISTIDINE\r\nTRANSPORTER 1 (LHT1; At5g40780), a small amino acid permease gene from the amino\r\nacid/auxin permease family (AAAP), we present its detailed characterisation in auxin feedback\r\non PIN repolarization, identified its transcriptional regulation, we propose a potential\r\nmechanism of its action. Moreover, we identified also a member of receptor-like protein\r\nkinase LRR-RLK (LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PROTEIN 1;\r\nLRRK1; At1g05700), which also affects auxin-dependent PIN re-arrangement. We described\r\nits transcriptional behaviour, subcellular localization. Based on global expression data, we\r\ntried to identify ligand responsible for mechanism of signalling and suggest signalling partner\r\nand interactors. Additionally, we described role of novel phytohormone group, strigolactone,\r\nin auxin-dependent PIN re-arrangement, that could be a fundament for future studies in this\r\nfield.\r\nOur results provide first insights into an auxin transcriptional network targeting PIN\r\nlocalization and thus regulating plant development. We highlighted WRKY23 transcriptional\r\nnetwork and characterised its mediatory role in plant development. We identified direct\r\neffectors of this network, LHT1 and LRRK1, and describe their roles in PIN re-arrangement and\r\nPIN-dependent auxin transport processes."}],"file_date_updated":"2021-02-22T11:52:56Z","degree_awarded":"PhD","acknowledgement":"I would like to first acknowledge my supervisor Jiří Friml for support, kind advice and patience. It was a pleasure to be a part of your lab, Jiří. I will remember the atmosphere present in auxin lab at VIB in Ghent and at IST in Klosterneuburg forever. I would like to thank all past and present lab members for the friendship and friendly and scientific environment in the groups. It was so nice to cooperate with you, guys. There was always someone who helped me with experiments, troubleshoot issues coming from our work etc. At this place, I would like to thank especially to Gergo Molnár. I’m happy (and lucky) that I have met him; he naturally became my tutor and guide through my PhD. From no one else during my entire professional career, I’ve learned that much.","department":[{"_id":"JiFr"}],"_id":"1127","page":"131","title":"Identification of novel regulators of PIN polarity and development of novel auxin sensor","status":"public","type":"dissertation","citation":{"chicago":"Prat, Tomas. “Identification of Novel Regulators of PIN Polarity and Development of Novel Auxin Sensor.” Institute of Science and Technology Austria, 2017.","ama":"Prat T. Identification of novel regulators of PIN polarity and development of novel auxin sensor. 2017.","short":"T. Prat, Identification of Novel Regulators of PIN Polarity and Development of Novel Auxin Sensor, Institute of Science and Technology Austria, 2017.","apa":"Prat, T. (2017). <i>Identification of novel regulators of PIN polarity and development of novel auxin sensor</i>. Institute of Science and Technology Austria.","mla":"Prat, Tomas. <i>Identification of Novel Regulators of PIN Polarity and Development of Novel Auxin Sensor</i>. Institute of Science and Technology Austria, 2017.","ieee":"T. Prat, “Identification of novel regulators of PIN polarity and development of novel auxin sensor,” Institute of Science and Technology Austria, 2017.","ista":"Prat T. 2017. Identification of novel regulators of PIN polarity and development of novel auxin sensor. Institute of Science and Technology Austria."},"article_processing_charge":"No","publication_status":"published","oa":1,"publication_identifier":{"issn":["2663-337X"]},"ddc":["580"],"date_updated":"2025-05-07T11:12:27Z","oa_version":"Published Version","month":"01","related_material":{"record":[{"status":"public","id":"449","relation":"part_of_dissertation"}]},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publist_id":"6233","has_accepted_license":"1","alternative_title":["ISTA Thesis"]},{"month":"01","oa_version":"Submitted Version","publist_id":"6226","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","oa":1,"publication_status":"published","publication_identifier":{"issn":["00368075"]},"ddc":["571"],"date_updated":"2023-09-20T11:30:35Z","has_accepted_license":"1","external_id":{"isi":["000391743700044"]},"doi":"10.1126/science.aag2787","intvolume":"       355","_id":"1132","page":"184 - 188","quality_controlled":"1","department":[{"_id":"JoCs"}],"article_processing_charge":"No","citation":{"ieee":"J. O’Neill, C. N. Boccara, F. Stella, P. Schönenberger, and J. L. Csicsvari, “Superficial layers of the medial entorhinal cortex replay independently of the hippocampus,” <i>Science</i>, vol. 355, no. 6321. American Association for the Advancement of Science, pp. 184–188, 2017.","ista":"O’Neill J, Boccara CN, Stella F, Schönenberger P, Csicsvari JL. 2017. Superficial layers of the medial entorhinal cortex replay independently of the hippocampus. Science. 355(6321), 184–188.","mla":"O’Neill, Joseph, et al. “Superficial Layers of the Medial Entorhinal Cortex Replay Independently of the Hippocampus.” <i>Science</i>, vol. 355, no. 6321, American Association for the Advancement of Science, 2017, pp. 184–88, doi:<a href=\"https://doi.org/10.1126/science.aag2787\">10.1126/science.aag2787</a>.","apa":"O’Neill, J., Boccara, C. N., Stella, F., Schönenberger, P., &#38; Csicsvari, J. L. (2017). Superficial layers of the medial entorhinal cortex replay independently of the hippocampus. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.aag2787\">https://doi.org/10.1126/science.aag2787</a>","short":"J. O’Neill, C.N. Boccara, F. Stella, P. Schönenberger, J.L. Csicsvari, Science 355 (2017) 184–188.","ama":"O’Neill J, Boccara CN, Stella F, Schönenberger P, Csicsvari JL. Superficial layers of the medial entorhinal cortex replay independently of the hippocampus. <i>Science</i>. 2017;355(6321):184-188. doi:<a href=\"https://doi.org/10.1126/science.aag2787\">10.1126/science.aag2787</a>","chicago":"O’Neill, Joseph, Charlotte N. Boccara, Federico Stella, Philipp Schönenberger, and Jozsef L Csicsvari. “Superficial Layers of the Medial Entorhinal Cortex Replay Independently of the Hippocampus.” <i>Science</i>. American Association for the Advancement of Science, 2017. <a href=\"https://doi.org/10.1126/science.aag2787\">https://doi.org/10.1126/science.aag2787</a>."},"isi":1,"title":"Superficial layers of the medial entorhinal cortex replay independently of the hippocampus","pubrep_id":"976","status":"public","type":"journal_article","publication":"Science","year":"2017","language":[{"iso":"eng"}],"day":"13","ec_funded":1,"file_date_updated":"2018-12-12T10:10:22Z","issue":"6321","author":[{"id":"426376DC-F248-11E8-B48F-1D18A9856A87","full_name":"O'Neill, Joseph","last_name":"O'Neill","first_name":"Joseph"},{"full_name":"Boccara, Charlotte","id":"3FC06552-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7237-5109","first_name":"Charlotte","last_name":"Boccara"},{"id":"39AF1E74-F248-11E8-B48F-1D18A9856A87","full_name":"Stella, Federico","first_name":"Federico","last_name":"Stella","orcid":"0000-0001-9439-3148"},{"full_name":"Schönenberger, Philipp","id":"3B9D816C-F248-11E8-B48F-1D18A9856A87","last_name":"Schönenberger","first_name":"Philipp"},{"orcid":"0000-0002-5193-4036","first_name":"Jozsef L","last_name":"Csicsvari","full_name":"Csicsvari, Jozsef L","id":"3FA14672-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2017-01-13T00:00:00Z","volume":355,"abstract":[{"lang":"eng","text":"The hippocampus is thought to initiate systems-wide mnemonic processes through the reactivation of previously acquired spatial and episodic memory traces, which can recruit the entorhinal cortex as a first stage of memory redistribution to other brain areas. Hippocampal reactivation occurs during sharp wave-ripples, in which synchronous network firing encodes sequences of places.We investigated the coordination of this replay by recording assembly activity simultaneously in the CA1 region of the hippocampus and superficial layers of the medial entorhinal cortex. We found that entorhinal cell assemblies can replay trajectories independently of the hippocampus and sharp wave-ripples. This suggests that the hippocampus is not the sole initiator of spatial and episodic memory trace reactivation. Memory systems involved in these processes may include nonhierarchical, parallel components."}],"date_created":"2018-12-11T11:50:19Z","project":[{"call_identifier":"FP7","grant_number":"281511","_id":"257A4776-B435-11E9-9278-68D0E5697425","name":"Memory-related information processing in neuronal circuits of the hippocampus and entorhinal cortex"}],"publisher":"American Association for the Advancement of Science","file":[{"date_updated":"2018-12-12T10:10:22Z","content_type":"application/pdf","file_name":"IST-2018-976-v1+1_2017Preprint_ONeill_Superficial_layers.pdf","access_level":"open_access","file_size":3761201,"file_id":"4809","creator":"system","date_created":"2018-12-12T10:10:22Z","relation":"main_file"}],"scopus_import":"1"},{"ec_funded":1,"publication":"Physical Review Letters","language":[{"iso":"eng"}],"year":"2017","day":"22","author":[{"last_name":"Yakaboylu","first_name":"Enderalp","orcid":"0000-0001-5973-0874","full_name":"Yakaboylu, Enderalp","id":"38CB71F6-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Mikhail","last_name":"Lemeshko","orcid":"0000-0002-6990-7802","full_name":"Lemeshko, Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2017-02-22T00:00:00Z","abstract":[{"text":"It is a common knowledge that an effective interaction of a quantum impurity with an electromagnetic field can be screened by surrounding charge carriers, whether mobile or static. Here we demonstrate that very strong, \"anomalous\" screening can take place in the presence of a neutral, weakly polarizable environment, due to an exchange of orbital angular momentum between the impurity and the bath. Furthermore, we show that it is possible to generalize all phenomena related to isolated impurities in an external field to the case when a many-body environment is present, by casting the problem in terms of the angulon quasiparticle. As a result, the relevant observables such as the effective Rabi frequency, geometric phase, and impurity spatial alignment are straightforward to evaluate in terms of a single parameter: the angular-momentum-dependent screening factor.","lang":"eng"}],"volume":118,"issue":"8","date_created":"2018-12-11T11:50:19Z","project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme","grant_number":"291734","call_identifier":"FP7"},{"call_identifier":"FWF","grant_number":"P29902","_id":"26031614-B435-11E9-9278-68D0E5697425","name":"Quantum rotations in the presence of a many-body environment"}],"scopus_import":"1","main_file_link":[{"url":"https://arxiv.org/abs/1612.02820","open_access":"1"}],"publisher":"American Physical Society","publication_status":"published","oa":1,"publication_identifier":{"issn":["00319007"]},"date_updated":"2023-09-20T11:30:08Z","oa_version":"Submitted Version","month":"02","publist_id":"6225","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","article_number":"085302","quality_controlled":"1","department":[{"_id":"MiLe"}],"external_id":{"isi":["000394667600003"]},"doi":"10.1103/PhysRevLett.118.085302","intvolume":"       118","_id":"1133","title":"Anomalous screening of quantum impurities by a neutral environment","status":"public","type":"journal_article","citation":{"short":"E. Yakaboylu, M. Lemeshko, Physical Review Letters 118 (2017).","ama":"Yakaboylu E, Lemeshko M. Anomalous screening of quantum impurities by a neutral environment. <i>Physical Review Letters</i>. 2017;118(8). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.118.085302\">10.1103/PhysRevLett.118.085302</a>","chicago":"Yakaboylu, Enderalp, and Mikhail Lemeshko. “Anomalous Screening of Quantum Impurities by a Neutral Environment.” <i>Physical Review Letters</i>. American Physical Society, 2017. <a href=\"https://doi.org/10.1103/PhysRevLett.118.085302\">https://doi.org/10.1103/PhysRevLett.118.085302</a>.","mla":"Yakaboylu, Enderalp, and Mikhail Lemeshko. “Anomalous Screening of Quantum Impurities by a Neutral Environment.” <i>Physical Review Letters</i>, vol. 118, no. 8, 085302, American Physical Society, 2017, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.118.085302\">10.1103/PhysRevLett.118.085302</a>.","apa":"Yakaboylu, E., &#38; Lemeshko, M. (2017). Anomalous screening of quantum impurities by a neutral environment. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.118.085302\">https://doi.org/10.1103/PhysRevLett.118.085302</a>","ista":"Yakaboylu E, Lemeshko M. 2017. Anomalous screening of quantum impurities by a neutral environment. Physical Review Letters. 118(8), 085302.","ieee":"E. Yakaboylu and M. Lemeshko, “Anomalous screening of quantum impurities by a neutral environment,” <i>Physical Review Letters</i>, vol. 118, no. 8. American Physical Society, 2017."},"article_processing_charge":"No","isi":1},{"scopus_import":1,"publisher":"Institute of Mathematical Statistics","file":[{"file_name":"IST-2017-747-v1+1_euclid.ecp.1483347665.pdf","file_size":440770,"access_level":"open_access","date_updated":"2018-12-12T10:18:10Z","content_type":"application/pdf","date_created":"2018-12-12T10:18:10Z","creator":"system","relation":"main_file","file_id":"5329"}],"project":[{"_id":"258DCDE6-B435-11E9-9278-68D0E5697425","name":"Random matrices, universality and disordered quantum systems","call_identifier":"FP7","grant_number":"338804"}],"date_created":"2018-12-11T11:50:23Z","abstract":[{"lang":"eng","text":"We show that matrix elements of functions of N × N Wigner matrices fluctuate on a scale of order N−1/2 and we identify the limiting fluctuation. Our result holds for any function f of the matrix that has bounded variation thus considerably relaxing the regularity requirement imposed in [7, 11]."}],"volume":21,"date_published":"2017-01-02T00:00:00Z","author":[{"last_name":"Erdös","first_name":"László","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","full_name":"Erdös, László"},{"full_name":"Schröder, Dominik J","id":"408ED176-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2904-1856","last_name":"Schröder","first_name":"Dominik J"}],"file_date_updated":"2018-12-12T10:18:10Z","ec_funded":1,"day":"02","year":"2017","language":[{"iso":"eng"}],"publication":"Electronic Communications in Probability","type":"journal_article","status":"public","pubrep_id":"747","title":"Fluctuations of functions of Wigner matrices","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"citation":{"ieee":"L. Erdös and D. J. Schröder, “Fluctuations of functions of Wigner matrices,” <i>Electronic Communications in Probability</i>, vol. 21. Institute of Mathematical Statistics, 2017.","ista":"Erdös L, Schröder DJ. 2017. Fluctuations of functions of Wigner matrices. Electronic Communications in Probability. 21, 86.","ama":"Erdös L, Schröder DJ. Fluctuations of functions of Wigner matrices. <i>Electronic Communications in Probability</i>. 2017;21. doi:<a href=\"https://doi.org/10.1214/16-ECP38\">10.1214/16-ECP38</a>","short":"L. Erdös, D.J. Schröder, Electronic Communications in Probability 21 (2017).","chicago":"Erdös, László, and Dominik J Schröder. “Fluctuations of Functions of Wigner Matrices.” <i>Electronic Communications in Probability</i>. Institute of Mathematical Statistics, 2017. <a href=\"https://doi.org/10.1214/16-ECP38\">https://doi.org/10.1214/16-ECP38</a>.","mla":"Erdös, László, and Dominik J. Schröder. “Fluctuations of Functions of Wigner Matrices.” <i>Electronic Communications in Probability</i>, vol. 21, 86, Institute of Mathematical Statistics, 2017, doi:<a href=\"https://doi.org/10.1214/16-ECP38\">10.1214/16-ECP38</a>.","apa":"Erdös, L., &#38; Schröder, D. J. (2017). Fluctuations of functions of Wigner matrices. <i>Electronic Communications in Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/16-ECP38\">https://doi.org/10.1214/16-ECP38</a>"},"department":[{"_id":"LaEr"}],"acknowledgement":"Partially supported by the IST Austria Excellence Scholarship.","quality_controlled":"1","_id":"1144","intvolume":"        21","doi":"10.1214/16-ECP38","article_number":"86","has_accepted_license":"1","date_updated":"2023-09-07T12:54:12Z","ddc":["510"],"oa":1,"publication_status":"published","publist_id":"6214","related_material":{"record":[{"id":"6179","relation":"dissertation_contains","status":"public"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","month":"01"},{"page":"1136-1142","_id":"1146","intvolume":"        36","doi":"10.1016/j.clnu.2016.07.016","department":[{"_id":"RySh"}],"acknowledgement":"We thank all the participants for their contribution to this study and volunteers from the Nursing School of Dalian University for their supporting to collect blood and urine samples of the participants. We also thank Dr. Yasunori Takayama from National Institute for Physiological Sciences of Japan for his kind help.","quality_controlled":"1","article_processing_charge":"No","citation":{"short":"W. Sun, M.-Z. Zhai, D. Li, Y. Zhou, N. Chen, M. Guo, S. Zhou, Clinical Nutrition 36 (2017) 1136–1142.","ama":"Sun W, Zhai M-Z, Li D, et al. Comparison of the effects of nicotinic acid and nicotinamide degradation on plasma betaine and choline levels. <i>Clinical Nutrition</i>. 2017;36(4):1136-1142. doi:<a href=\"https://doi.org/10.1016/j.clnu.2016.07.016\">10.1016/j.clnu.2016.07.016</a>","chicago":"Sun, Wuping, Ming-Zhu Zhai, Da Li, Yiming Zhou, Nana Chen, Ming Guo, and Shisheng Zhou. “Comparison of the Effects of Nicotinic Acid and Nicotinamide Degradation on Plasma Betaine and Choline Levels.” <i>Clinical Nutrition</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.clnu.2016.07.016\">https://doi.org/10.1016/j.clnu.2016.07.016</a>.","apa":"Sun, W., Zhai, M.-Z., Li, D., Zhou, Y., Chen, N., Guo, M., &#38; Zhou, S. (2017). Comparison of the effects of nicotinic acid and nicotinamide degradation on plasma betaine and choline levels. <i>Clinical Nutrition</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.clnu.2016.07.016\">https://doi.org/10.1016/j.clnu.2016.07.016</a>","mla":"Sun, Wuping, et al. “Comparison of the Effects of Nicotinic Acid and Nicotinamide Degradation on Plasma Betaine and Choline Levels.” <i>Clinical Nutrition</i>, vol. 36, no. 4, Elsevier, 2017, pp. 1136–42, doi:<a href=\"https://doi.org/10.1016/j.clnu.2016.07.016\">10.1016/j.clnu.2016.07.016</a>.","ista":"Sun W, Zhai M-Z, Li D, Zhou Y, Chen N, Guo M, Zhou S. 2017. Comparison of the effects of nicotinic acid and nicotinamide degradation on plasma betaine and choline levels. Clinical Nutrition. 36(4), 1136–1142.","ieee":"W. Sun <i>et al.</i>, “Comparison of the effects of nicotinic acid and nicotinamide degradation on plasma betaine and choline levels,” <i>Clinical Nutrition</i>, vol. 36, no. 4. Elsevier, pp. 1136–1142, 2017."},"type":"journal_article","status":"public","title":"Comparison of the effects of nicotinic acid and nicotinamide degradation on plasma betaine and choline levels","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publist_id":"6212","oa_version":"None","month":"08","date_updated":"2023-10-16T11:09:39Z","publication_identifier":{"issn":["0261-5614"]},"publication_status":"published","date_created":"2018-12-11T11:50:24Z","publisher":"Elsevier","scopus_import":"1","day":"01","language":[{"iso":"eng"}],"year":"2017","publication":"Clinical Nutrition","issue":"4","abstract":[{"lang":"eng","text":"Aim: The present study was to compare the effects of nicotinic acid and nicotinamide on the plasma methyl donors, choline and betaine. Methods: Thirty adult subjects were randomly divided into three groups of equal size, and orally received purified water (C group), nicotinic acid (300 mg, NA group) or nicotinamide (300 mg, NM group). Plasma nicotinamide, N 1-methylnicotinamide, homocysteine, betaine and choline levels before and 1.5-h and 3-h post-dosing, plasma normetanephrine and metanephrine concentrations at 3-h post-dosing, and the urinary excretion of N 1-methyl-2-pyridone-5-carboxamide during the test period were examined. Results: The level of 3-h plasma nicotinamide, N 1-methylnicotinamide, homocysteine, the urinary excretion of N 1-methyl-2-pyridone-5-carboxamide and pulse pressure (PP) in the NM group was 221%, 3972%, 61%, 1728% and 21.2% higher than that of the control group (P &lt; 0.01, except homocysteine and PP P &lt; 0.05), while the 3-h plasma betaine, normetanephrine and metanephrine level in the NM group was 24.4%, 9.4% and 11.7% lower (P &lt; 0.05, except betaine P &lt; 0.01), without significant difference in choline levels. Similar but less pronounced changes were observed in the NA group, with a lower level of 3-h plasma N 1-methylnicotinamide (1.90 ± 0.20 μmol/l vs. 3.62 ± 0.27 μmol/l, P &lt; 0.01) and homocysteine (12.85 ± 1.39 μmol/l vs. 18.08 ± 1.02 μmol/l, P &lt; 0.05) but a higher level of betaine (27.44 ± 0.71 μmol/l vs. 23.52 ± 0.61 μmol/l, P &lt; 0.05) than that of the NM group. Conclusion: The degradation of nicotinamide consumes more betaine than that of nicotinic acid at identical doses. This difference should be taken into consideration in niacin fortification. © 2016 Elsevier Ltd and European Society for Clinical Nutrition and Metabolism."}],"volume":36,"date_published":"2017-08-01T00:00:00Z","author":[{"full_name":"Sun, Wuping","last_name":"Sun","first_name":"Wuping"},{"first_name":"Ming-Zhu","last_name":"Zhai","full_name":"Zhai, Ming-Zhu","id":"34009CFA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Li, Da","last_name":"Li","first_name":"Da"},{"full_name":"Zhou, Yiming","last_name":"Zhou","first_name":"Yiming"},{"full_name":"Chen, Nana","last_name":"Chen","first_name":"Nana"},{"full_name":"Guo, Ming","first_name":"Ming","last_name":"Guo"},{"full_name":"Zhou, Shisheng","first_name":"Shisheng","last_name":"Zhou"}]},{"scopus_import":"1","file":[{"success":1,"file_id":"5842","relation":"main_file","creator":"dernst","date_created":"2019-01-18T08:43:16Z","content_type":"application/pdf","date_updated":"2019-01-18T08:43:16Z","access_level":"open_access","file_size":1083911,"file_name":"2016_jocs_ewa.pdf"}],"publisher":"Elsevier","date_created":"2018-12-11T11:50:26Z","author":[{"first_name":"Ewa P","last_name":"Gajda-Zagorska","full_name":"Gajda-Zagorska, Ewa P","id":"47794CF0-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Schaefer","first_name":"Robert","full_name":"Schaefer, Robert"},{"first_name":"Maciej","last_name":"Smołka","full_name":"Smołka, Maciej"},{"full_name":"Pardo, David","first_name":"David","last_name":"Pardo"},{"full_name":"Alvarez Aramberri, Julen","first_name":"Julen","last_name":"Alvarez Aramberri"}],"volume":18,"abstract":[{"lang":"eng","text":"We propose a new memetic strategy that can solve the multi-physics, complex inverse problems, formulated as the multi-objective optimization ones, in which objectives are misfits between the measured and simulated states of various governing processes. The multi-deme structure of the strategy allows for both, intensive, relatively cheap exploration with a moderate accuracy and more accurate search many regions of Pareto set in parallel. The special type of selection operator prefers the coherent alternative solutions, eliminating artifacts appearing in the particular processes. The additional accuracy increment is obtained by the parallel convex searches applied to the local scalarizations of the misfit vector. The strategy is dedicated for solving ill-conditioned problems, for which inverting the single physical process can lead to the ambiguous results. The skill of the selection in artifact elimination is shown on the benchmark problem, while the whole strategy was applied for identification of oil deposits, where the misfits are related to various frequencies of the magnetic and electric waves of the magnetotelluric measurements. 2016 Elsevier B.V."}],"date_published":"2017-01-01T00:00:00Z","file_date_updated":"2019-01-18T08:43:16Z","publication":"Journal of Computational Science","day":"01","year":"2017","language":[{"iso":"eng"}],"title":"A multi objective memetic inverse solver reinforced by local optimization methods","status":"public","type":"journal_article","article_processing_charge":"No","citation":{"ista":"Gajda-Zagorska EP, Schaefer R, Smołka M, Pardo D, Alvarez Aramberri J. 2017. A multi objective memetic inverse solver reinforced by local optimization methods. Journal of Computational Science. 18, 85–94.","ieee":"E. P. Gajda-Zagorska, R. Schaefer, M. Smołka, D. Pardo, and J. Alvarez Aramberri, “A multi objective memetic inverse solver reinforced by local optimization methods,” <i>Journal of Computational Science</i>, vol. 18. Elsevier, pp. 85–94, 2017.","short":"E.P. Gajda-Zagorska, R. Schaefer, M. Smołka, D. Pardo, J. Alvarez Aramberri, Journal of Computational Science 18 (2017) 85–94.","ama":"Gajda-Zagorska EP, Schaefer R, Smołka M, Pardo D, Alvarez Aramberri J. A multi objective memetic inverse solver reinforced by local optimization methods. <i>Journal of Computational Science</i>. 2017;18:85-94. doi:<a href=\"https://doi.org/10.1016/j.jocs.2016.06.007\">10.1016/j.jocs.2016.06.007</a>","chicago":"Gajda-Zagorska, Ewa P, Robert Schaefer, Maciej Smołka, David Pardo, and Julen Alvarez Aramberri. “A Multi Objective Memetic Inverse Solver Reinforced by Local Optimization Methods.” <i>Journal of Computational Science</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.jocs.2016.06.007\">https://doi.org/10.1016/j.jocs.2016.06.007</a>.","mla":"Gajda-Zagorska, Ewa P., et al. “A Multi Objective Memetic Inverse Solver Reinforced by Local Optimization Methods.” <i>Journal of Computational Science</i>, vol. 18, Elsevier, 2017, pp. 85–94, doi:<a href=\"https://doi.org/10.1016/j.jocs.2016.06.007\">10.1016/j.jocs.2016.06.007</a>.","apa":"Gajda-Zagorska, E. P., Schaefer, R., Smołka, M., Pardo, D., &#38; Alvarez Aramberri, J. (2017). A multi objective memetic inverse solver reinforced by local optimization methods. <i>Journal of Computational Science</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jocs.2016.06.007\">https://doi.org/10.1016/j.jocs.2016.06.007</a>"},"isi":1,"quality_controlled":"1","department":[{"_id":"ChWo"}],"doi":"10.1016/j.jocs.2016.06.007","external_id":{"isi":["000393528700009"]},"_id":"1152","page":"85 - 94","intvolume":"        18","has_accepted_license":"1","publication_status":"published","oa":1,"ddc":["000"],"date_updated":"2023-09-20T11:29:44Z","publication_identifier":{"issn":["18777503"]},"oa_version":"Submitted Version","month":"01","publist_id":"6206","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1"},{"ec_funded":1,"language":[{"iso":"eng"}],"year":"2017","day":"02","author":[{"full_name":"Daca, Przemyslaw","id":"49351290-F248-11E8-B48F-1D18A9856A87","first_name":"Przemyslaw","last_name":"Daca"}],"date_published":"2017-01-02T00:00:00Z","abstract":[{"lang":"eng","text":"This dissertation concerns the automatic verification of probabilistic systems and programs with arrays by statistical and logical methods. Although statistical and logical methods are different in nature, we show that they can be successfully combined for system analysis. In the first part of the dissertation we present a new statistical algorithm for the verification of probabilistic systems with respect to unbounded properties, including linear temporal logic. Our algorithm often performs faster than the previous approaches, and at the same time requires less information about the system. In addition, our method can be generalized to unbounded quantitative properties such as mean-payoff bounds. In the second part, we introduce two techniques for comparing probabilistic systems. Probabilistic systems are typically compared using the notion of equivalence, which requires the systems to have the equal probability of all behaviors. However, this notion is often too strict, since probabilities are typically only empirically estimated, and any imprecision may break the relation between processes. On the one hand, we propose to replace the Boolean notion of equivalence by a quantitative distance of similarity. For this purpose, we introduce a statistical framework for estimating distances between Markov chains based on their simulation runs, and we investigate which distances can be approximated in our framework. On the other hand, we propose to compare systems with respect to a new qualitative logic, which expresses that behaviors occur with probability one or a positive probability. This qualitative analysis is robust with respect to modeling errors and applicable to many domains. In the last part, we present a new quantifier-free logic for integer arrays, which allows us to express counting. Counting properties are prevalent in array-manipulating programs, however they cannot be expressed in the quantified fragments of the theory of arrays. We present a decision procedure for our logic, and provide several complexity results."}],"file_date_updated":"2020-07-14T12:44:34Z","date_created":"2018-12-11T11:50:27Z","project":[{"name":"Quantitative Reactive Modeling","_id":"25EE3708-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"267989"},{"call_identifier":"FWF","grant_number":"Z211","name":"The Wittgenstein Prize","_id":"25F42A32-B435-11E9-9278-68D0E5697425"},{"grant_number":"S 11407_N23","call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425","name":"Rigorous Systems Engineering"}],"supervisor":[{"full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A","last_name":"Henzinger","orcid":"0000−0002−2985−7724"}],"publisher":"Institute of Science and Technology Austria","file":[{"file_size":1028586,"access_level":"open_access","file_name":"IST-2017-730-v1+1_Statistical_and_Logical_Methods_for_Property_Checking.pdf","content_type":"application/pdf","date_updated":"2020-07-14T12:44:34Z","relation":"main_file","checksum":"1406a681cb737508234fde34766be2c2","date_created":"2018-12-12T10:11:26Z","creator":"system","file_id":"4880"}],"publication_status":"published","oa":1,"publication_identifier":{"issn":["2663-337X"]},"date_updated":"2023-09-07T11:58:34Z","ddc":["004","005"],"oa_version":"Published Version","month":"01","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","related_material":{"record":[{"id":"1093","relation":"part_of_dissertation","status":"public"},{"id":"1230","relation":"part_of_dissertation","status":"public"},{"relation":"part_of_dissertation","id":"1234","status":"public"},{"relation":"part_of_dissertation","id":"1391","status":"public"},{"id":"1501","relation":"part_of_dissertation","status":"public"},{"relation":"part_of_dissertation","id":"1502","status":"public"},{"status":"public","relation":"part_of_dissertation","id":"2063"},{"status":"public","relation":"part_of_dissertation","id":"2167"}]},"publist_id":"6203","has_accepted_license":"1","alternative_title":["ISTA Thesis"],"degree_awarded":"PhD","acknowledgement":" First of all, I want to thank my advisor, prof. Thomas A. Henzinger, for his guidance during my PhD program. I am grateful for the freedom I was given to pursue my research interests, and his continuous support. Working with prof. Henzinger was a truly inspiring experience and taught me what it means to be a scientist. I want to express my gratitude to my collaborators: Nikola Beneš, Krishnendu Chatterjee, Martin Chmelík, Ashutosh Gupta, Willibald Krenn, Jan Kˇretínský, Dejan Nickovic, Andrey Kupriyanov, and Tatjana Petrov. I have learned a great deal from my collaborators, and without their help this thesis would not be possible. In addition, I want to thank the members of my thesis committee: Dirk Beyer, Dejan Nickovic, and Georg Weissenbacher for their advice and reviewing this dissertation. I would especially like to acknowledge the late Helmut Veith, who was a member of my committee. I will remember Helmut for his kindness, enthusiasm, and wit, as well as for being an inspiring scientist. Finally, I would like to thank my colleagues for making my stay at IST such a pleasant experience: Guy Avni, Sergiy Bogomolov, Ventsislav Chonev, Rasmus Ibsen-Jensen, Mirco Giacobbe, Bernhard Kragl, Hui Kong, Petr Novotný, Jan Otop, Andreas Pavlogiannis, Tantjana Petrov, Arjun Radhakrishna, Jakob Ruess, Thorsten Tarrach, as well as other members of groups Henzinger and Chatterjee. ","department":[{"_id":"ToHe"}],"doi":"10.15479/AT:ISTA:TH_730","_id":"1155","page":"163","title":"Statistical and logical methods for property checking","pubrep_id":"730","type":"dissertation","status":"public","article_processing_charge":"No","citation":{"short":"P. Daca, Statistical and Logical Methods for Property Checking, Institute of Science and Technology Austria, 2017.","ama":"Daca P. Statistical and logical methods for property checking. 2017. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:TH_730\">10.15479/AT:ISTA:TH_730</a>","chicago":"Daca, Przemyslaw. “Statistical and Logical Methods for Property Checking.” Institute of Science and Technology Austria, 2017. <a href=\"https://doi.org/10.15479/AT:ISTA:TH_730\">https://doi.org/10.15479/AT:ISTA:TH_730</a>.","apa":"Daca, P. (2017). <i>Statistical and logical methods for property checking</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:TH_730\">https://doi.org/10.15479/AT:ISTA:TH_730</a>","mla":"Daca, Przemyslaw. <i>Statistical and Logical Methods for Property Checking</i>. Institute of Science and Technology Austria, 2017, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:TH_730\">10.15479/AT:ISTA:TH_730</a>.","ista":"Daca P. 2017. Statistical and logical methods for property checking. Institute of Science and Technology Austria.","ieee":"P. Daca, “Statistical and logical methods for property checking,” Institute of Science and Technology Austria, 2017."}},{"publisher":"American Society of Plant Biologists","file":[{"date_updated":"2020-07-14T12:44:36Z","content_type":"application/pdf","file_name":"2016_PlantPhysi_Steenackers.pdf","file_size":4109142,"access_level":"open_access","file_id":"7040","creator":"dernst","date_created":"2019-11-18T16:12:25Z","relation":"main_file","checksum":"fd4d1cfe7ed70e54bb12ae3881f3fb91"}],"pmid":1,"scopus_import":"1","project":[{"call_identifier":"FP7","grant_number":"282300","name":"Polarity and subcellular dynamics in plants","_id":"25716A02-B435-11E9-9278-68D0E5697425"}],"date_created":"2018-12-11T11:50:28Z","article_type":"original","file_date_updated":"2020-07-14T12:44:36Z","issue":"1","author":[{"last_name":"Steenackers","first_name":"Ward","full_name":"Steenackers, Ward"},{"full_name":"Klíma, Petr","last_name":"Klíma","first_name":"Petr"},{"last_name":"Quareshy","first_name":"Mussa","full_name":"Quareshy, Mussa"},{"full_name":"Cesarino, Igor","last_name":"Cesarino","first_name":"Igor"},{"full_name":"Kumpf, Robert","last_name":"Kumpf","first_name":"Robert"},{"first_name":"Sander","last_name":"Corneillie","full_name":"Corneillie, Sander"},{"first_name":"Pedro","last_name":"Araújo","full_name":"Araújo, Pedro"},{"last_name":"Viaene","first_name":"Tom","full_name":"Viaene, Tom"},{"last_name":"Goeminne","first_name":"Geert","full_name":"Goeminne, Geert"},{"full_name":"Nowack, Moritz","first_name":"Moritz","last_name":"Nowack"},{"full_name":"Ljung, Karin","last_name":"Ljung","first_name":"Karin"},{"orcid":"0000-0002-8302-7596","first_name":"Jirí","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jirí"},{"full_name":"Blakeslee, Joshua","last_name":"Blakeslee","first_name":"Joshua"},{"full_name":"Novák, Ondřej","last_name":"Novák","first_name":"Ondřej"},{"last_name":"Zažímalová","first_name":"Eva","full_name":"Zažímalová, Eva"},{"last_name":"Napier","first_name":"Richard","full_name":"Napier, Richard"},{"full_name":"Boerjan, Wout","last_name":"Boerjan","first_name":"Wout"},{"full_name":"Vanholme, Bartel","last_name":"Vanholme","first_name":"Bartel"}],"abstract":[{"lang":"eng","text":"Auxin steers numerous physiological processes in plants, making the tight control of its endogenous levels and spatiotemporal distribution a necessity. This regulation is achieved by different mechanisms, including auxin biosynthesis, metabolic conversions, degradation, and transport. Here, we introduce cis-cinnamic acid (c-CA) as a novel and unique addition to a small group of endogenous molecules affecting in planta auxin concentrations. c-CA is the photo-isomerization product of the phenylpropanoid pathway intermediate trans-CA (t-CA). When grown on c-CA-containing medium, an evolutionary diverse set of plant species were shown to exhibit phenotypes characteristic for high auxin levels, including inhibition of primary root growth, induction of root hairs, and promotion of adventitious and lateral rooting. By molecular docking and receptor binding assays, we showed that c-CA itself is neither an auxin nor an anti-auxin, and auxin profiling data revealed that c-CA does not significantly interfere with auxin biosynthesis. Single cell-based auxin accumulation assays showed that c-CA, and not t-CA, is a potent inhibitor of auxin efflux. Auxin signaling reporters detected changes in spatiotemporal distribution of the auxin response along the root of c-CA-treated plants, and long-distance auxin transport assays showed no inhibition of rootward auxin transport. Overall, these results suggest that the phenotypes of c-CA-treated plants are the consequence of a local change in auxin accumulation, induced by the inhibition of auxin efflux. This work reveals a novel mechanism how plants may regulate auxin levels and adds a novel, naturally occurring molecule to the chemical toolbox for the studies of auxin homeostasis."}],"volume":173,"date_published":"2017-01-01T00:00:00Z","publication":"Plant Physiology","day":"01","year":"2017","language":[{"iso":"eng"}],"ec_funded":1,"citation":{"short":"W. Steenackers, P. Klíma, M. Quareshy, I. Cesarino, R. Kumpf, S. Corneillie, P. Araújo, T. Viaene, G. Goeminne, M. Nowack, K. Ljung, J. Friml, J. Blakeslee, O. Novák, E. Zažímalová, R. Napier, W. Boerjan, B. Vanholme, Plant Physiology 173 (2017) 552–565.","chicago":"Steenackers, Ward, Petr Klíma, Mussa Quareshy, Igor Cesarino, Robert Kumpf, Sander Corneillie, Pedro Araújo, et al. “Cis-Cinnamic Acid Is a Novel Natural Auxin Efflux Inhibitor That Promotes Lateral Root Formation.” <i>Plant Physiology</i>. American Society of Plant Biologists, 2017. <a href=\"https://doi.org/10.1104/pp.16.00943\">https://doi.org/10.1104/pp.16.00943</a>.","ama":"Steenackers W, Klíma P, Quareshy M, et al. Cis-cinnamic acid is a novel natural auxin efflux inhibitor that promotes lateral root formation. <i>Plant Physiology</i>. 2017;173(1):552-565. doi:<a href=\"https://doi.org/10.1104/pp.16.00943\">10.1104/pp.16.00943</a>","apa":"Steenackers, W., Klíma, P., Quareshy, M., Cesarino, I., Kumpf, R., Corneillie, S., … Vanholme, B. (2017). Cis-cinnamic acid is a novel natural auxin efflux inhibitor that promotes lateral root formation. <i>Plant Physiology</i>. American Society of Plant Biologists. <a href=\"https://doi.org/10.1104/pp.16.00943\">https://doi.org/10.1104/pp.16.00943</a>","mla":"Steenackers, Ward, et al. “Cis-Cinnamic Acid Is a Novel Natural Auxin Efflux Inhibitor That Promotes Lateral Root Formation.” <i>Plant Physiology</i>, vol. 173, no. 1, American Society of Plant Biologists, 2017, pp. 552–65, doi:<a href=\"https://doi.org/10.1104/pp.16.00943\">10.1104/pp.16.00943</a>.","ista":"Steenackers W, Klíma P, Quareshy M, Cesarino I, Kumpf R, Corneillie S, Araújo P, Viaene T, Goeminne G, Nowack M, Ljung K, Friml J, Blakeslee J, Novák O, Zažímalová E, Napier R, Boerjan W, Vanholme B. 2017. Cis-cinnamic acid is a novel natural auxin efflux inhibitor that promotes lateral root formation. Plant Physiology. 173(1), 552–565.","ieee":"W. Steenackers <i>et al.</i>, “Cis-cinnamic acid is a novel natural auxin efflux inhibitor that promotes lateral root formation,” <i>Plant Physiology</i>, vol. 173, no. 1. American Society of Plant Biologists, pp. 552–565, 2017."},"article_processing_charge":"No","isi":1,"title":"Cis-cinnamic acid is a novel natural auxin efflux inhibitor that promotes lateral root formation","type":"journal_article","status":"public","doi":"10.1104/pp.16.00943","external_id":{"isi":["000394135800041"],"pmid":["27837086"]},"_id":"1159","page":"552 - 565","intvolume":"       173","quality_controlled":"1","department":[{"_id":"JiFr"}],"has_accepted_license":"1","oa_version":"Submitted Version","month":"01","publist_id":"6199","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publication_status":"published","oa":1,"ddc":["580"],"date_updated":"2025-05-07T11:12:30Z","publication_identifier":{"issn":["0032-0889"]}},{"author":[{"id":"2EE67FDC-F248-11E8-B48F-1D18A9856A87","full_name":"Altmeyer, Sebastian","first_name":"Sebastian","last_name":"Altmeyer","orcid":"0000-0001-5964-0203"},{"last_name":"Do","first_name":"Younghae","full_name":"Do, Younghae"},{"first_name":"Ying","last_name":"Lai","full_name":"Lai, Ying"}],"date_published":"2017-01-06T00:00:00Z","abstract":[{"text":"We investigate fundamental nonlinear dynamics of ferrofluidic Taylor-Couette flow - flow confined be-tween two concentric independently rotating cylinders - consider small aspect ratio by solving the ferro-hydrodynamical equations, carrying out systematic bifurcation analysis. Without magnetic field, we find steady flow patterns, previously observed with a simple fluid, such as those containing normal one- or two vortex cells, as well as anomalous one-cell and twin-cell flow states. However, when a symmetry-breaking transverse magnetic field is present, all flow states exhibit stimulated, finite two-fold mode. Various bifurcations between steady and unsteady states can occur, corresponding to the transitions between the two-cell and one-cell states. While unsteady, axially oscillating flow states can arise, we also detect the emergence of new unsteady flow states. In particular, we uncover two new states: one contains only the azimuthally oscillating solution in the configuration of the twin-cell flow state, and an-other a rotating flow state. Topologically, these flow states are a limit cycle and a quasiperiodic solution on a two-torus, respectively. Emergence of new flow states in addition to observed ones with classical fluid, indicates that richer but potentially more controllable dynamics in ferrofluidic flows, as such flow states depend on the external magnetic field.","lang":"eng"}],"volume":7,"file_date_updated":"2020-07-14T12:44:36Z","publication":"Scientific Reports","language":[{"iso":"eng"}],"year":"2017","day":"06","scopus_import":"1","file":[{"file_id":"4802","relation":"main_file","checksum":"694aa70399444570825099c1a7ec91f2","date_created":"2018-12-12T10:10:16Z","creator":"system","content_type":"application/pdf","date_updated":"2020-07-14T12:44:36Z","file_size":4546835,"access_level":"open_access","file_name":"IST-2017-743-v1+1_srep40012.pdf"}],"publisher":"Nature Publishing Group","date_created":"2018-12-11T11:50:28Z","article_number":"40012","has_accepted_license":"1","publication_status":"published","oa":1,"publication_identifier":{"issn":["20452322"]},"ddc":["532"],"date_updated":"2023-09-20T11:28:49Z","oa_version":"Published Version","month":"01","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publist_id":"6198","title":"Dynamics of ferrofluidic flow in the Taylor-Couette system with a small aspect ratio","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"pubrep_id":"743","type":"journal_article","status":"public","article_processing_charge":"No","citation":{"mla":"Altmeyer, Sebastian, et al. “Dynamics of Ferrofluidic Flow in the Taylor-Couette System with a Small Aspect Ratio.” <i>Scientific Reports</i>, vol. 7, 40012, Nature Publishing Group, 2017, doi:<a href=\"https://doi.org/10.1038/srep40012\">10.1038/srep40012</a>.","apa":"Altmeyer, S., Do, Y., &#38; Lai, Y. (2017). Dynamics of ferrofluidic flow in the Taylor-Couette system with a small aspect ratio. <i>Scientific Reports</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/srep40012\">https://doi.org/10.1038/srep40012</a>","chicago":"Altmeyer, Sebastian, Younghae Do, and Ying Lai. “Dynamics of Ferrofluidic Flow in the Taylor-Couette System with a Small Aspect Ratio.” <i>Scientific Reports</i>. Nature Publishing Group, 2017. <a href=\"https://doi.org/10.1038/srep40012\">https://doi.org/10.1038/srep40012</a>.","short":"S. Altmeyer, Y. Do, Y. Lai, Scientific Reports 7 (2017).","ama":"Altmeyer S, Do Y, Lai Y. Dynamics of ferrofluidic flow in the Taylor-Couette system with a small aspect ratio. <i>Scientific Reports</i>. 2017;7. doi:<a href=\"https://doi.org/10.1038/srep40012\">10.1038/srep40012</a>","ieee":"S. Altmeyer, Y. Do, and Y. Lai, “Dynamics of ferrofluidic flow in the Taylor-Couette system with a small aspect ratio,” <i>Scientific Reports</i>, vol. 7. Nature Publishing Group, 2017.","ista":"Altmeyer S, Do Y, Lai Y. 2017. Dynamics of ferrofluidic flow in the Taylor-Couette system with a small aspect ratio. Scientific Reports. 7, 40012."},"isi":1,"quality_controlled":"1","department":[{"_id":"BjHo"}],"external_id":{"isi":["000391269700001"]},"doi":"10.1038/srep40012","intvolume":"         7","_id":"1160"},{"publication_status":"published","date_updated":"2023-09-20T11:28:19Z","publication_identifier":{"issn":["09609822"]},"oa_version":"None","month":"01","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publist_id":"6197","quality_controlled":"1","department":[{"_id":"MiSi"}],"doi":"10.1016/j.cub.2016.11.035","external_id":{"isi":["000391902500010"]},"_id":"1161","page":"R24 - R25","intvolume":"        27","title":"Cell migration: Making the waves","status":"public","type":"journal_article","article_processing_charge":"No","citation":{"ieee":"J. Müller and M. K. Sixt, “Cell migration: Making the waves,” <i>Current Biology</i>, vol. 27, no. 1. Cell Press, pp. R24–R25, 2017.","ista":"Müller J, Sixt MK. 2017. Cell migration: Making the waves. Current Biology. 27(1), R24–R25.","chicago":"Müller, Jan, and Michael K Sixt. “Cell Migration: Making the Waves.” <i>Current Biology</i>. Cell Press, 2017. <a href=\"https://doi.org/10.1016/j.cub.2016.11.035\">https://doi.org/10.1016/j.cub.2016.11.035</a>.","short":"J. Müller, M.K. Sixt, Current Biology 27 (2017) R24–R25.","ama":"Müller J, Sixt MK. Cell migration: Making the waves. <i>Current Biology</i>. 2017;27(1):R24-R25. doi:<a href=\"https://doi.org/10.1016/j.cub.2016.11.035\">10.1016/j.cub.2016.11.035</a>","mla":"Müller, Jan, and Michael K. Sixt. “Cell Migration: Making the Waves.” <i>Current Biology</i>, vol. 27, no. 1, Cell Press, 2017, pp. R24–25, doi:<a href=\"https://doi.org/10.1016/j.cub.2016.11.035\">10.1016/j.cub.2016.11.035</a>.","apa":"Müller, J., &#38; Sixt, M. K. (2017). Cell migration: Making the waves. <i>Current Biology</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cub.2016.11.035\">https://doi.org/10.1016/j.cub.2016.11.035</a>"},"isi":1,"publication":"Current Biology","day":"09","language":[{"iso":"eng"}],"year":"2017","author":[{"last_name":"Müller","first_name":"Jan","id":"AD07FDB4-0F61-11EA-8158-C4CC64CEAA8D","full_name":"Müller, Jan"},{"id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","full_name":"Sixt, Michael K","first_name":"Michael K","last_name":"Sixt","orcid":"0000-0002-6620-9179"}],"abstract":[{"lang":"eng","text":"Coordinated changes of cell shape are often the result of the excitable, wave-like dynamics of the actin cytoskeleton. New work shows that, in migrating cells, protrusion waves arise from mechanochemical crosstalk between adhesion sites, membrane tension and the actin protrusive machinery."}],"volume":27,"date_published":"2017-01-09T00:00:00Z","issue":"1","date_created":"2018-12-11T11:50:29Z","scopus_import":"1","publisher":"Cell Press"},{"article_number":"024506","publication_identifier":{"issn":["24699950"]},"date_updated":"2023-09-20T11:25:56Z","publication_status":"published","oa":1,"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publist_id":"6195","oa_version":"Submitted Version","month":"01","status":"public","type":"journal_article","title":"Universal properties of high temperature superconductors from real space pairing t-J-U model and its quantitative comparison with experiment","isi":1,"citation":{"ieee":"J. Spałek, M. Zegrodnik, and J. Kaczmarczyk, “Universal properties of high temperature superconductors from real space pairing t-J-U model and its quantitative comparison with experiment,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 95, no. 2. American Physical Society, 2017.","ista":"Spałek J, Zegrodnik M, Kaczmarczyk J. 2017. Universal properties of high temperature superconductors from real space pairing t-J-U model and its quantitative comparison with experiment. Physical Review B - Condensed Matter and Materials Physics. 95(2), 024506.","mla":"Spałek, Jozef, et al. “Universal Properties of High Temperature Superconductors from Real Space Pairing T-J-U Model and Its Quantitative Comparison with Experiment.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 95, no. 2, 024506, American Physical Society, 2017, doi:<a href=\"https://doi.org/10.1103/PhysRevB.95.024506\">10.1103/PhysRevB.95.024506</a>.","apa":"Spałek, J., Zegrodnik, M., &#38; Kaczmarczyk, J. (2017). Universal properties of high temperature superconductors from real space pairing t-J-U model and its quantitative comparison with experiment. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.95.024506\">https://doi.org/10.1103/PhysRevB.95.024506</a>","ama":"Spałek J, Zegrodnik M, Kaczmarczyk J. Universal properties of high temperature superconductors from real space pairing t-J-U model and its quantitative comparison with experiment. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2017;95(2). doi:<a href=\"https://doi.org/10.1103/PhysRevB.95.024506\">10.1103/PhysRevB.95.024506</a>","short":"J. Spałek, M. Zegrodnik, J. Kaczmarczyk, Physical Review B - Condensed Matter and Materials Physics 95 (2017).","chicago":"Spałek, Jozef, Michał Zegrodnik, and Jan Kaczmarczyk. “Universal Properties of High Temperature Superconductors from Real Space Pairing T-J-U Model and Its Quantitative Comparison with Experiment.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2017. <a href=\"https://doi.org/10.1103/PhysRevB.95.024506\">https://doi.org/10.1103/PhysRevB.95.024506</a>."},"article_processing_charge":"No","department":[{"_id":"MiLe"}],"quality_controlled":"1","intvolume":"        95","_id":"1162","external_id":{"isi":["000391852800006"]},"doi":"10.1103/PhysRevB.95.024506","date_published":"2017-01-13T00:00:00Z","abstract":[{"text":"Selected universal experimental properties of high-temperature superconducting (HTS) cuprates have been singled out in the last decade. One of the pivotal challenges in this field is the designation of a consistent interpretation framework within which we can describe quantitatively the universal features of those systems. Here we analyze in a detailed manner the principal experimental data and compare them quantitatively with the approach based on a single-band model of strongly correlated electrons supplemented with strong antiferromagnetic (super)exchange interaction (the so-called t−J−U model). The model rationale is provided by estimating its microscopic parameters on the basis of the three-band approach for the Cu-O plane. We use our original full Gutzwiller wave-function solution by going beyond the renormalized mean-field theory (RMFT) in a systematic manner. Our approach reproduces very well the observed hole doping (δ) dependence of the kinetic-energy gain in the superconducting phase, one of the principal non-Bardeen-Cooper-Schrieffer features of the cuprates. The calculated Fermi velocity in the nodal direction is practically δ-independent and its universal value agrees very well with that determined experimentally. Also, a weak doping dependence of the Fermi wave vector leads to an almost constant value of the effective mass in a pure superconducting phase which is both observed in experiment and reproduced within our approach. An assessment of the currently used models (t−J, Hubbard) is carried out and the results of the canonical RMFT as a zeroth-order solution are provided for comparison to illustrate the necessity of the introduced higher-order contributions.","lang":"eng"}],"volume":95,"author":[{"full_name":"Spałek, Jozef","first_name":"Jozef","last_name":"Spałek"},{"last_name":"Zegrodnik","first_name":"Michał","full_name":"Zegrodnik, Michał"},{"orcid":"0000-0002-1629-3675","first_name":"Jan","last_name":"Kaczmarczyk","id":"46C405DE-F248-11E8-B48F-1D18A9856A87","full_name":"Kaczmarczyk, Jan"}],"issue":"2","ec_funded":1,"language":[{"iso":"eng"}],"year":"2017","day":"13","publication":"Physical Review B - Condensed Matter and Materials Physics","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1606.03247"}],"publisher":"American Physical Society","date_created":"2018-12-11T11:50:29Z","project":[{"grant_number":"291734","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme"}]},{"author":[{"full_name":"Wysokiński, Marcin","first_name":"Marcin","last_name":"Wysokiński"},{"orcid":"0000-0002-1629-3675","first_name":"Jan","last_name":"Kaczmarczyk","full_name":"Kaczmarczyk, Jan","id":"46C405DE-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2017-01-16T00:00:00Z","abstract":[{"lang":"eng","text":"We investigate the effect of the electron-hole (e-h) symmetry breaking on d-wave superconductivity induced by non-local effects of correlations in the generalized Hubbard model. The symmetry breaking is introduced in a two-fold manner: by the next-to-nearest neighbor hopping of electrons and by the charge-bond interaction - the off-diagonal term of the Coulomb potential. Both terms lead to a pronounced asymmetry of the superconducting order parameter. The next-to-nearest neighbor hopping enhances superconductivity for h-doping, while diminishes it for e-doping. The charge-bond interaction alone leads to the opposite effect and, additionally, to the kinetic-energy gain upon condensation in the underdoped regime. With both terms included, with similar amplitudes, the height of the superconducting dome and the critical doping remain in favor of h-doping. The influence of the charge-bond interaction on deviations from symmetry of the shape of the gap at the Fermi surface in the momentum space is briefly discussed."}],"volume":29,"issue":"8","ec_funded":1,"publication":"Journal of Physics: Condensed Matter","language":[{"iso":"eng"}],"year":"2017","day":"16","scopus_import":"1","publisher":"IOP Publishing Ltd.","date_created":"2018-12-11T11:50:29Z","project":[{"grant_number":"291734","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme"}],"article_number":"085604","publication_status":"published","publication_identifier":{"issn":["09538984"]},"date_updated":"2023-09-20T11:25:32Z","oa_version":"None","month":"01","publist_id":"6194","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","title":"Unconventional superconductivity in generalized Hubbard model role of electron–hole symmetry breaking terms","type":"journal_article","status":"public","citation":{"apa":"Wysokiński, M., &#38; Kaczmarczyk, J. (2017). Unconventional superconductivity in generalized Hubbard model role of electron–hole symmetry breaking terms. <i>Journal of Physics: Condensed Matter</i>. IOP Publishing Ltd. <a href=\"https://doi.org/10.1088/1361-648X/aa532f\">https://doi.org/10.1088/1361-648X/aa532f</a>","mla":"Wysokiński, Marcin, and Jan Kaczmarczyk. “Unconventional Superconductivity in Generalized Hubbard Model Role of Electron–Hole Symmetry Breaking Terms.” <i>Journal of Physics: Condensed Matter</i>, vol. 29, no. 8, 085604, IOP Publishing Ltd., 2017, doi:<a href=\"https://doi.org/10.1088/1361-648X/aa532f\">10.1088/1361-648X/aa532f</a>.","short":"M. Wysokiński, J. Kaczmarczyk, Journal of Physics: Condensed Matter 29 (2017).","chicago":"Wysokiński, Marcin, and Jan Kaczmarczyk. “Unconventional Superconductivity in Generalized Hubbard Model Role of Electron–Hole Symmetry Breaking Terms.” <i>Journal of Physics: Condensed Matter</i>. IOP Publishing Ltd., 2017. <a href=\"https://doi.org/10.1088/1361-648X/aa532f\">https://doi.org/10.1088/1361-648X/aa532f</a>.","ama":"Wysokiński M, Kaczmarczyk J. Unconventional superconductivity in generalized Hubbard model role of electron–hole symmetry breaking terms. <i>Journal of Physics: Condensed Matter</i>. 2017;29(8). doi:<a href=\"https://doi.org/10.1088/1361-648X/aa532f\">10.1088/1361-648X/aa532f</a>","ista":"Wysokiński M, Kaczmarczyk J. 2017. Unconventional superconductivity in generalized Hubbard model role of electron–hole symmetry breaking terms. Journal of Physics: Condensed Matter. 29(8), 085604.","ieee":"M. Wysokiński and J. Kaczmarczyk, “Unconventional superconductivity in generalized Hubbard model role of electron–hole symmetry breaking terms,” <i>Journal of Physics: Condensed Matter</i>, vol. 29, no. 8. IOP Publishing Ltd., 2017."},"article_processing_charge":"No","isi":1,"quality_controlled":"1","department":[{"_id":"MiLe"}],"external_id":{"isi":["000393955500001"]},"doi":"10.1088/1361-648X/aa532f","intvolume":"        29","_id":"1163"},{"title":"D inf s optimality in copula models","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"status":"public","type":"journal_article","pubrep_id":"739","citation":{"ama":"Perrone E, Rappold A, Müller W. D inf s optimality in copula models. <i>Statistical Methods and Applications</i>. 2017;26(3):403-418. doi:<a href=\"https://doi.org/10.1007/s10260-016-0375-6\">10.1007/s10260-016-0375-6</a>","short":"E. Perrone, A. Rappold, W. Müller, Statistical Methods and Applications 26 (2017) 403–418.","chicago":"Perrone, Elisa, Andreas Rappold, and Werner Müller. “D Inf s Optimality in Copula Models.” <i>Statistical Methods and Applications</i>. Springer, 2017. <a href=\"https://doi.org/10.1007/s10260-016-0375-6\">https://doi.org/10.1007/s10260-016-0375-6</a>.","apa":"Perrone, E., Rappold, A., &#38; Müller, W. (2017). D inf s optimality in copula models. <i>Statistical Methods and Applications</i>. Springer. <a href=\"https://doi.org/10.1007/s10260-016-0375-6\">https://doi.org/10.1007/s10260-016-0375-6</a>","mla":"Perrone, Elisa, et al. “D Inf s Optimality in Copula Models.” <i>Statistical Methods and Applications</i>, vol. 26, no. 3, Springer, 2017, pp. 403–18, doi:<a href=\"https://doi.org/10.1007/s10260-016-0375-6\">10.1007/s10260-016-0375-6</a>.","ista":"Perrone E, Rappold A, Müller W. 2017. D inf s optimality in copula models. Statistical Methods and Applications. 26(3), 403–418.","ieee":"E. Perrone, A. Rappold, and W. Müller, “D inf s optimality in copula models,” <i>Statistical Methods and Applications</i>, vol. 26, no. 3. Springer, pp. 403–418, 2017."},"article_processing_charge":"No","isi":1,"acknowledgement":"This work has been supported by the project ANR-2011-IS01-001-01 “DESIRE” and Austrian Science Fund (FWF) I833-N18. Open access funding is provided by the Austrian Science Fund (FWF). ","quality_controlled":"1","department":[{"_id":"CaUh"}],"doi":"10.1007/s10260-016-0375-6","external_id":{"isi":["000407973200004"]},"_id":"1168","page":"403 - 418","intvolume":"        26","has_accepted_license":"1","publication_status":"published","oa":1,"ddc":["519"],"date_updated":"2023-09-20T11:25:09Z","month":"08","oa_version":"Submitted Version","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publist_id":"6189","scopus_import":"1","file":[{"relation":"main_file","checksum":"0b2d1b647ca96e9ef13a14b8b6775e0f","date_created":"2018-12-12T10:16:13Z","creator":"system","file_id":"5199","access_level":"open_access","file_size":56664,"file_name":"IST-2017-739-v1+2_10260_2016_375_MOESM1_ESM.pdf","content_type":"application/pdf","date_updated":"2020-07-14T12:44:37Z"},{"file_id":"5200","relation":"main_file","checksum":"3321ef34e02e28acfc427f77cf32812a","date_created":"2018-12-12T10:16:14Z","creator":"system","content_type":"application/pdf","date_updated":"2020-07-14T12:44:37Z","access_level":"open_access","file_size":688953,"file_name":"IST-2017-739-v1+3_s10260-016-0375-6.pdf"}],"publisher":"Springer","date_created":"2018-12-11T11:50:31Z","author":[{"id":"2A5F8724-F248-11E8-B48F-1D18A9856A87","full_name":"Perrone, Elisa","first_name":"Elisa","last_name":"Perrone","orcid":"0000-0003-0370-9835"},{"full_name":"Rappold, Andreas","first_name":"Andreas","last_name":"Rappold"},{"full_name":"Müller, Werner","last_name":"Müller","first_name":"Werner"}],"volume":26,"abstract":[{"text":"Optimum experimental design theory has recently been extended for parameter estimation in copula models. The use of these models allows one to gain in flexibility by considering the model parameter set split into marginal and dependence parameters. However, this separation also leads to the natural issue of estimating only a subset of all model parameters. In this work, we treat this problem with the application of the (Formula presented.)-optimality to copula models. First, we provide an extension of the corresponding equivalence theory. Then, we analyze a wide range of flexible copula models to highlight the usefulness of (Formula presented.)-optimality in many possible scenarios. Finally, we discuss how the usage of the introduced design criterion also relates to the more general issue of copula selection and optimal design for model discrimination.","lang":"eng"}],"date_published":"2017-08-01T00:00:00Z","file_date_updated":"2020-07-14T12:44:37Z","issue":"3","publication":"Statistical Methods and Applications","day":"01","language":[{"iso":"eng"}],"year":"2017"},{"file_date_updated":"2020-07-14T12:44:37Z","issue":"1","author":[{"full_name":"Novak, Sebastian","id":"461468AE-F248-11E8-B48F-1D18A9856A87","last_name":"Novak","first_name":"Sebastian","orcid":"0000-0002-2519-824X"},{"full_name":"Kollár, Richard","first_name":"Richard","last_name":"Kollár"}],"abstract":[{"lang":"eng","text":"Dispersal is a crucial factor in natural evolution, since it determines the habitat experienced by any population and defines the spatial scale of interactions between individuals. There is compelling evidence for systematic differences in dispersal characteristics within the same population, i.e., genotype-dependent dispersal. The consequences of genotype-dependent dispersal on other evolutionary phenomena, however, are poorly understood. In this article we investigate the effect of genotype-dependent dispersal on spatial gene frequency patterns, using a generalization of the classical diffusion model of selection and dispersal. Dispersal is characterized by the variance of dispersal (diffusion coefficient) and the mean displacement (directional advection term). We demonstrate that genotype-dependent dispersal may change the qualitative behavior of Fisher waves, which change from being “pulled” to being “pushed” wave fronts as the discrepancy in dispersal between genotypes increases. The speed of any wave is partitioned into components due to selection, genotype-dependent variance of dispersal, and genotype-dependent mean displacement. We apply our findings to wave fronts maintained by selection against heterozygotes. Furthermore, we identify a benefit of increased variance of dispersal, quantify its effect on the speed of the wave, and discuss the implications for the evolution of dispersal strategies."}],"volume":205,"date_published":"2017-01-01T00:00:00Z","publication":"Genetics","day":"01","year":"2017","language":[{"iso":"eng"}],"ec_funded":1,"publisher":"Genetics Society of America","file":[{"file_name":"IST-2016-727-v1+1_SFC_Genetics_final.pdf","access_level":"open_access","file_size":361500,"date_updated":"2020-07-14T12:44:37Z","content_type":"application/pdf","creator":"system","date_created":"2018-12-12T10:10:43Z","checksum":"7c8ab79cda1f92760bbbbe0f53175bfc","relation":"main_file","file_id":"4833"}],"scopus_import":"1","project":[{"grant_number":"618091","call_identifier":"FP7","name":"Speed of Adaptation in Population Genetics and Evolutionary Computation","_id":"25B1EC9E-B435-11E9-9278-68D0E5697425"},{"_id":"25B07788-B435-11E9-9278-68D0E5697425","name":"Limits to selection in biology and in evolutionary computation","call_identifier":"FP7","grant_number":"250152"}],"date_created":"2018-12-11T11:50:31Z","has_accepted_license":"1","month":"01","oa_version":"Submitted Version","publist_id":"6188","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publication_status":"published","oa":1,"ddc":["576"],"date_updated":"2025-05-28T11:42:46Z","publication_identifier":{"issn":["00166731"]},"article_processing_charge":"No","citation":{"ista":"Novak S, Kollár R. 2017. Spatial gene frequency waves under genotype dependent dispersal. Genetics. 205(1), 367–374.","ieee":"S. Novak and R. Kollár, “Spatial gene frequency waves under genotype dependent dispersal,” <i>Genetics</i>, vol. 205, no. 1. Genetics Society of America, pp. 367–374, 2017.","mla":"Novak, Sebastian, and Richard Kollár. “Spatial Gene Frequency Waves under Genotype Dependent Dispersal.” <i>Genetics</i>, vol. 205, no. 1, Genetics Society of America, 2017, pp. 367–74, doi:<a href=\"https://doi.org/10.1534/genetics.116.193946\">10.1534/genetics.116.193946</a>.","apa":"Novak, S., &#38; Kollár, R. (2017). Spatial gene frequency waves under genotype dependent dispersal. <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.116.193946\">https://doi.org/10.1534/genetics.116.193946</a>","ama":"Novak S, Kollár R. Spatial gene frequency waves under genotype dependent dispersal. <i>Genetics</i>. 2017;205(1):367-374. doi:<a href=\"https://doi.org/10.1534/genetics.116.193946\">10.1534/genetics.116.193946</a>","chicago":"Novak, Sebastian, and Richard Kollár. “Spatial Gene Frequency Waves under Genotype Dependent Dispersal.” <i>Genetics</i>. Genetics Society of America, 2017. <a href=\"https://doi.org/10.1534/genetics.116.193946\">https://doi.org/10.1534/genetics.116.193946</a>.","short":"S. Novak, R. Kollár, Genetics 205 (2017) 367–374."},"isi":1,"title":"Spatial gene frequency waves under genotype dependent dispersal","type":"journal_article","status":"public","pubrep_id":"727","doi":"10.1534/genetics.116.193946","external_id":{"isi":["000393677300025"]},"_id":"1169","page":"367 - 374","intvolume":"       205","quality_controlled":"1","department":[{"_id":"NiBa"}]},{"intvolume":"        37","page":"887 - 910","_id":"1173","external_id":{"isi":["000418056000005"]},"doi":"10.1007/s00493-016-3308-y","department":[{"_id":"HeEd"}],"quality_controlled":"1","acknowledgement":"This research is partially supported by the Russian Government under the Mega Project 11.G34.31.0053, by the Toposys project FP7-ICT-318493-STREP, by ESF under the ACAT Research Network Programme, by RFBR grant 11-01-00735, and by NSF grants DMS-1101688, DMS-1400876.","isi":1,"article_processing_charge":"No","citation":{"ista":"Edelsbrunner H, Glazyrin A, Musin O, Nikitenko A. 2017. The Voronoi functional is maximized by the Delaunay triangulation in the plane. Combinatorica. 37(5), 887–910.","ieee":"H. Edelsbrunner, A. Glazyrin, O. Musin, and A. Nikitenko, “The Voronoi functional is maximized by the Delaunay triangulation in the plane,” <i>Combinatorica</i>, vol. 37, no. 5. Springer, pp. 887–910, 2017.","mla":"Edelsbrunner, Herbert, et al. “The Voronoi Functional Is Maximized by the Delaunay Triangulation in the Plane.” <i>Combinatorica</i>, vol. 37, no. 5, Springer, 2017, pp. 887–910, doi:<a href=\"https://doi.org/10.1007/s00493-016-3308-y\">10.1007/s00493-016-3308-y</a>.","apa":"Edelsbrunner, H., Glazyrin, A., Musin, O., &#38; Nikitenko, A. (2017). The Voronoi functional is maximized by the Delaunay triangulation in the plane. <i>Combinatorica</i>. Springer. <a href=\"https://doi.org/10.1007/s00493-016-3308-y\">https://doi.org/10.1007/s00493-016-3308-y</a>","chicago":"Edelsbrunner, Herbert, Alexey Glazyrin, Oleg Musin, and Anton Nikitenko. “The Voronoi Functional Is Maximized by the Delaunay Triangulation in the Plane.” <i>Combinatorica</i>. Springer, 2017. <a href=\"https://doi.org/10.1007/s00493-016-3308-y\">https://doi.org/10.1007/s00493-016-3308-y</a>.","short":"H. Edelsbrunner, A. Glazyrin, O. Musin, A. Nikitenko, Combinatorica 37 (2017) 887–910.","ama":"Edelsbrunner H, Glazyrin A, Musin O, Nikitenko A. The Voronoi functional is maximized by the Delaunay triangulation in the plane. <i>Combinatorica</i>. 2017;37(5):887-910. doi:<a href=\"https://doi.org/10.1007/s00493-016-3308-y\">10.1007/s00493-016-3308-y</a>"},"type":"journal_article","status":"public","title":"The Voronoi functional is maximized by the Delaunay triangulation in the plane","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publist_id":"6182","oa_version":"Submitted Version","month":"10","publication_identifier":{"issn":["02099683"]},"date_updated":"2023-09-20T11:23:53Z","oa":1,"publication_status":"published","project":[{"name":"Topological Complex Systems","_id":"255D761E-B435-11E9-9278-68D0E5697425","grant_number":"318493","call_identifier":"FP7"}],"date_created":"2018-12-11T11:50:32Z","main_file_link":[{"url":"https://arxiv.org/abs/1411.6337","open_access":"1"}],"publisher":"Springer","scopus_import":"1","language":[{"iso":"eng"}],"year":"2017","day":"01","publication":"Combinatorica","ec_funded":1,"issue":"5","date_published":"2017-10-01T00:00:00Z","volume":37,"abstract":[{"text":"We introduce the Voronoi functional of a triangulation of a finite set of points in the Euclidean plane and prove that among all geometric triangulations of the point set, the Delaunay triangulation maximizes the functional. This result neither extends to topological triangulations in the plane nor to geometric triangulations in three and higher dimensions.","lang":"eng"}],"author":[{"first_name":"Herbert","last_name":"Edelsbrunner","orcid":"0000-0002-9823-6833","full_name":"Edelsbrunner, Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Glazyrin, Alexey","first_name":"Alexey","last_name":"Glazyrin"},{"last_name":"Musin","first_name":"Oleg","full_name":"Musin, Oleg"},{"orcid":"0000-0002-0659-3201","last_name":"Nikitenko","first_name":"Anton","id":"3E4FF1BA-F248-11E8-B48F-1D18A9856A87","full_name":"Nikitenko, Anton"}]},{"author":[{"last_name":"Skórski","first_name":"Maciej","id":"EC09FA6A-02D0-11E9-8223-86B7C91467DD","full_name":"Skórski, Maciej"}],"date_published":"2017-03-01T00:00:00Z","volume":66,"abstract":[{"lang":"eng","text":"Security of cryptographic applications is typically defined by security games. The adversary, within certain resources, cannot win with probability much better than 0 (for unpredictability applications, like one-way functions) or much better than 1/2 (indistinguishability applications for instance encryption schemes). In so called squared-friendly applications the winning probability of the adversary, for different values of the application secret randomness, is not only close to 0 or 1/2 on average, but also concentrated in the sense that its second central moment is small. The class of squared-friendly applications, which contains all unpredictability applications and many indistinguishability applications, is particularly important for key derivation. Barak et al. observed that for square-friendly applications one can beat the &quot;RT-bound&quot;, extracting secure keys with significantly smaller entropy loss. In turn Dodis and Yu showed that in squared-friendly applications one can directly use a &quot;weak&quot; key, which has only high entropy, as a secure key. In this paper we give sharp lower bounds on square security assuming security for &quot;weak&quot; keys. We show that any application which is either (a) secure with weak keys or (b) allows for entropy savings for keys derived by universal hashing, must be square-friendly. Quantitatively, our lower bounds match the positive results of Dodis and Yu and Barak et al. (TCC\\'13, CRYPTO\\'11) Hence, they can be understood as a general characterization of squared-friendly applications. While the positive results on squared-friendly applications where derived by one clever application of the Cauchy-Schwarz Inequality, for tight lower bounds we need more machinery. In our approach we use convex optimization techniques and some theory of circular matrices."}],"language":[{"iso":"eng"}],"year":"2017","day":"01","ec_funded":1,"main_file_link":[{"open_access":"1","url":"http://drops.dagstuhl.de/opus/volltexte/2017/6976"}],"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","scopus_import":"1","project":[{"grant_number":"682815","call_identifier":"H2020","name":"Teaching Old Crypto New Tricks","_id":"258AA5B2-B435-11E9-9278-68D0E5697425"}],"date_created":"2018-12-11T11:50:32Z","alternative_title":["LIPIcs"],"article_number":"57","month":"03","oa_version":"Submitted Version","publist_id":"6180","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","conference":{"name":"STACS: Symposium on Theoretical Aspects of Computer Science","end_date":"2017-03-11","start_date":"2017-03-08","location":"Hannover, Germany"},"oa":1,"publication_status":"published","publication_identifier":{"issn":["18688969"]},"date_updated":"2023-09-20T11:23:15Z","citation":{"mla":"Skórski, Maciej. <i>Lower Bounds on Key Derivation for Square-Friendly Applications</i>. Vol. 66, 57, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017, doi:<a href=\"https://doi.org/10.4230/LIPIcs.STACS.2017.57\">10.4230/LIPIcs.STACS.2017.57</a>.","apa":"Skórski, M. (2017). Lower bounds on key derivation for square-friendly applications (Vol. 66). Presented at the STACS: Symposium on Theoretical Aspects of Computer Science, Hannover, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.STACS.2017.57\">https://doi.org/10.4230/LIPIcs.STACS.2017.57</a>","chicago":"Skórski, Maciej. “Lower Bounds on Key Derivation for Square-Friendly Applications,” Vol. 66. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017. <a href=\"https://doi.org/10.4230/LIPIcs.STACS.2017.57\">https://doi.org/10.4230/LIPIcs.STACS.2017.57</a>.","ama":"Skórski M. Lower bounds on key derivation for square-friendly applications. In: Vol 66. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2017. doi:<a href=\"https://doi.org/10.4230/LIPIcs.STACS.2017.57\">10.4230/LIPIcs.STACS.2017.57</a>","short":"M. Skórski, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.","ieee":"M. Skórski, “Lower bounds on key derivation for square-friendly applications,” presented at the STACS: Symposium on Theoretical Aspects of Computer Science, Hannover, Germany, 2017, vol. 66.","ista":"Skórski M. 2017. Lower bounds on key derivation for square-friendly applications. STACS: Symposium on Theoretical Aspects of Computer Science, LIPIcs, vol. 66, 57."},"article_processing_charge":"No","isi":1,"title":"Lower bounds on key derivation for square-friendly applications","type":"conference","status":"public","external_id":{"isi":["000521077300057"]},"doi":"10.4230/LIPIcs.STACS.2017.57","intvolume":"        66","_id":"1174","quality_controlled":"1","department":[{"_id":"KrPi"}]}]