[{"publication":"Botany Letters","article_processing_charge":"No","scopus_import":"1","type":"journal_article","language":[{"iso":"eng"}],"author":[{"first_name":"Christophe","full_name":"Andalo, Christophe","last_name":"Andalo"},{"full_name":"Burrus, Monique","first_name":"Monique","last_name":"Burrus"},{"first_name":"Sandrine","full_name":"Paute, Sandrine","last_name":"Paute"},{"first_name":"Christine","full_name":"Lauzeral, Christine","last_name":"Lauzeral"},{"last_name":"Field","full_name":"Field, David","first_name":"David","id":"419049E2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4014-8478"}],"month":"01","page":"80-92","date_created":"2018-12-16T22:59:20Z","volume":166,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publisher":"Taylor and Francis","_id":"5680","abstract":[{"lang":"eng","text":"Pollinators display a remarkable diversity of foraging strategies with flowering plants, from primarily mutualistic interactions to cheating through nectar robbery. Despite numerous studies on the effect of nectar robbing on components of plant fitness, its contribution to reproductive isolation is unclear. We experimentally tested the impact of different pollinator strategies in a natural hybrid zone between two subspecies of Antirrhinum majus with alternate flower colour guides. On either side of a steep cline in flower colour between Antirrhinum majus pseudomajus (magenta) and A. m. striatum (yellow), we quantified the behaviour of all floral visitors at different time points during the flowering season. Using long-run camera surveys, we quantify the impact of nectar robbing on the number of flowers visited per inflorescence and the flower probing time. We further experimentally tested the effect of nectar robbing on female reproductive success by manipulating the intensity of robbing. While robbing increased over time the number of legitimate visitors tended to decrease concomitantly. We found that the number of flowers pollinated on a focal inflorescence decreased with the number of prior robbing events. However, in the manipulative experiment, fruit set and fruit volume did not vary significantly between low robbing and control treatments. Our findings challenge the idea that robbers have a negative impact on plant fitness through female function. This study also adds to our understanding of the components of pollinator-mediated reproductive isolation and the maintenance of Antirrhinum hybrid zones."}],"date_updated":"2023-08-24T14:34:12Z","intvolume":"       166","status":"public","external_id":{"isi":["000463802800009"]},"year":"2019","issue":"1","title":"Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone","publication_identifier":{"eissn":["23818115"],"issn":["23818107"]},"doi":"10.1080/23818107.2018.1545142","day":"01","isi":1,"date_published":"2019-01-01T00:00:00Z","department":[{"_id":"NiBa"}],"oa_version":"None","quality_controlled":"1","publication_status":"published","citation":{"ista":"Andalo C, Burrus M, Paute S, Lauzeral C, Field D. 2019. Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone. Botany Letters. 166(1), 80–92.","mla":"Andalo, Christophe, et al. “Prevalence of Legitimate Pollinators and Nectar Robbers and the Consequences for Fruit Set in an Antirrhinum Majus Hybrid Zone.” <i>Botany Letters</i>, vol. 166, no. 1, Taylor and Francis, 2019, pp. 80–92, doi:<a href=\"https://doi.org/10.1080/23818107.2018.1545142\">10.1080/23818107.2018.1545142</a>.","short":"C. Andalo, M. Burrus, S. Paute, C. Lauzeral, D. Field, Botany Letters 166 (2019) 80–92.","ieee":"C. Andalo, M. Burrus, S. Paute, C. Lauzeral, and D. Field, “Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone,” <i>Botany Letters</i>, vol. 166, no. 1. Taylor and Francis, pp. 80–92, 2019.","chicago":"Andalo, Christophe, Monique Burrus, Sandrine Paute, Christine Lauzeral, and David Field. “Prevalence of Legitimate Pollinators and Nectar Robbers and the Consequences for Fruit Set in an Antirrhinum Majus Hybrid Zone.” <i>Botany Letters</i>. Taylor and Francis, 2019. <a href=\"https://doi.org/10.1080/23818107.2018.1545142\">https://doi.org/10.1080/23818107.2018.1545142</a>.","apa":"Andalo, C., Burrus, M., Paute, S., Lauzeral, C., &#38; Field, D. (2019). Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone. <i>Botany Letters</i>. Taylor and Francis. <a href=\"https://doi.org/10.1080/23818107.2018.1545142\">https://doi.org/10.1080/23818107.2018.1545142</a>","ama":"Andalo C, Burrus M, Paute S, Lauzeral C, Field D. Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone. <i>Botany Letters</i>. 2019;166(1):80-92. doi:<a href=\"https://doi.org/10.1080/23818107.2018.1545142\">10.1080/23818107.2018.1545142</a>"}},{"date_created":"2018-12-30T22:59:15Z","page":"169–178","file_date_updated":"2020-10-21T07:18:35Z","related_material":{"link":[{"description":"News on IST Homepage","url":"https://ist.ac.at/en/news/when-a-fish-becomes-fluid/","relation":"press_release"}]},"volume":21,"ddc":["570"],"scopus_import":"1","publication":"Nature Cell Biology","article_processing_charge":"No","type":"journal_article","month":"02","author":[{"id":"2A003F6C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8451-1195","last_name":"Petridou","first_name":"Nicoletta","full_name":"Petridou, Nicoletta"},{"full_name":"Grigolon, Silvia","first_name":"Silvia","last_name":"Grigolon"},{"last_name":"Salbreux","first_name":"Guillaume","full_name":"Salbreux, Guillaume"},{"orcid":"0000-0001-6005-1561","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","first_name":"Edouard B","full_name":"Hannezo, Edouard B","last_name":"Hannezo"},{"orcid":"0000-0002-0912-4566","id":"39427864-F248-11E8-B48F-1D18A9856A87","first_name":"Carl-Philipp J","full_name":"Heisenberg, Carl-Philipp J","last_name":"Heisenberg"}],"language":[{"iso":"eng"}],"_id":"5789","pmid":1,"abstract":[{"text":"Tissue morphogenesis is driven by mechanical forces that elicit changes in cell size, shape and motion. The extent by which forces deform tissues critically depends on the rheological properties of the recipient tissue. Yet, whether and how dynamic changes in tissue rheology affect tissue morphogenesis and how they are regulated within the developing organism remain unclear. Here, we show that blastoderm spreading at the onset of zebrafish morphogenesis relies on a rapid, pronounced and spatially patterned tissue fluidization. Blastoderm fluidization is temporally controlled by mitotic cell rounding-dependent cell–cell contact disassembly during the last rounds of cell cleavages. Moreover, fluidization is spatially restricted to the central blastoderm by local activation of non-canonical Wnt signalling within the blastoderm margin, increasing cell cohesion and thereby counteracting the effect of mitotic rounding on contact disassembly. Overall, our results identify a fluidity transition mediated by loss of cell cohesion as a critical regulator of embryo morphogenesis.","lang":"eng"}],"ec_funded":1,"acknowledged_ssus":[{"_id":"Bio"}],"project":[{"_id":"260F1432-B435-11E9-9278-68D0E5697425","name":"Interaction and feedback between cell mechanics and fate specification in vertebrate gastrulation","grant_number":"742573","call_identifier":"H2020"},{"grant_number":"ALTF710-2016","name":"Molecular mechanism of auxindriven formative divisions delineating lateral root organogenesis in plants (EMBO fellowship)","_id":"253E54C8-B435-11E9-9278-68D0E5697425"}],"publisher":"Nature Publishing Group","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","year":"2019","doi":"10.1038/s41556-018-0247-4","day":"01","isi":1,"publication_identifier":{"issn":["14657392"]},"has_accepted_license":"1","title":"Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling","intvolume":"        21","status":"public","date_updated":"2023-09-11T14:03:28Z","external_id":{"isi":["000457468300011"],"pmid":["30559456"]},"oa":1,"quality_controlled":"1","citation":{"ista":"Petridou N, Grigolon S, Salbreux G, Hannezo EB, Heisenberg C-PJ. 2019. Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling. Nature Cell Biology. 21, 169–178.","ieee":"N. Petridou, S. Grigolon, G. Salbreux, E. B. Hannezo, and C.-P. J. Heisenberg, “Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling,” <i>Nature Cell Biology</i>, vol. 21. Nature Publishing Group, pp. 169–178, 2019.","short":"N. Petridou, S. Grigolon, G. Salbreux, E.B. Hannezo, C.-P.J. Heisenberg, Nature Cell Biology 21 (2019) 169–178.","mla":"Petridou, Nicoletta, et al. “Fluidization-Mediated Tissue Spreading by Mitotic Cell Rounding and Non-Canonical Wnt Signalling.” <i>Nature Cell Biology</i>, vol. 21, Nature Publishing Group, 2019, pp. 169–178, doi:<a href=\"https://doi.org/10.1038/s41556-018-0247-4\">10.1038/s41556-018-0247-4</a>.","chicago":"Petridou, Nicoletta, Silvia Grigolon, Guillaume Salbreux, Edouard B Hannezo, and Carl-Philipp J Heisenberg. “Fluidization-Mediated Tissue Spreading by Mitotic Cell Rounding and Non-Canonical Wnt Signalling.” <i>Nature Cell Biology</i>. Nature Publishing Group, 2019. <a href=\"https://doi.org/10.1038/s41556-018-0247-4\">https://doi.org/10.1038/s41556-018-0247-4</a>.","ama":"Petridou N, Grigolon S, Salbreux G, Hannezo EB, Heisenberg C-PJ. Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling. <i>Nature Cell Biology</i>. 2019;21:169–178. doi:<a href=\"https://doi.org/10.1038/s41556-018-0247-4\">10.1038/s41556-018-0247-4</a>","apa":"Petridou, N., Grigolon, S., Salbreux, G., Hannezo, E. B., &#38; Heisenberg, C.-P. J. (2019). Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling. <i>Nature Cell Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41556-018-0247-4\">https://doi.org/10.1038/s41556-018-0247-4</a>"},"publication_status":"published","article_type":"original","date_published":"2019-02-01T00:00:00Z","oa_version":"Submitted Version","file":[{"creator":"dernst","file_id":"8685","content_type":"application/pdf","date_created":"2020-10-21T07:18:35Z","success":1,"file_name":"2018_NatureCellBio_Petridou_accepted.pdf","relation":"main_file","access_level":"open_access","file_size":71590590,"checksum":"e38523787b3bc84006f2793de99ad70f","date_updated":"2020-10-21T07:18:35Z"}],"department":[{"_id":"CaHe"},{"_id":"EdHa"}]},{"oa_version":"Preprint","department":[{"_id":"UlWa"}],"date_published":"2019-08-01T00:00:00Z","article_type":"original","citation":{"ista":"Chaplick S, Fulek R, Klavík P. 2019. Extending partial representations of circle graphs. Journal of Graph Theory. 91(4), 365–394.","ieee":"S. Chaplick, R. Fulek, and P. Klavík, “Extending partial representations of circle graphs,” <i>Journal of Graph Theory</i>, vol. 91, no. 4. Wiley, pp. 365–394, 2019.","short":"S. Chaplick, R. Fulek, P. Klavík, Journal of Graph Theory 91 (2019) 365–394.","mla":"Chaplick, Steven, et al. “Extending Partial Representations of Circle Graphs.” <i>Journal of Graph Theory</i>, vol. 91, no. 4, Wiley, 2019, pp. 365–94, doi:<a href=\"https://doi.org/10.1002/jgt.22436\">10.1002/jgt.22436</a>.","chicago":"Chaplick, Steven, Radoslav Fulek, and Pavel Klavík. “Extending Partial Representations of Circle Graphs.” <i>Journal of Graph Theory</i>. Wiley, 2019. <a href=\"https://doi.org/10.1002/jgt.22436\">https://doi.org/10.1002/jgt.22436</a>.","ama":"Chaplick S, Fulek R, Klavík P. Extending partial representations of circle graphs. <i>Journal of Graph Theory</i>. 2019;91(4):365-394. doi:<a href=\"https://doi.org/10.1002/jgt.22436\">10.1002/jgt.22436</a>","apa":"Chaplick, S., Fulek, R., &#38; Klavík, P. (2019). Extending partial representations of circle graphs. <i>Journal of Graph Theory</i>. Wiley. <a href=\"https://doi.org/10.1002/jgt.22436\">https://doi.org/10.1002/jgt.22436</a>"},"publication_status":"published","arxiv":1,"quality_controlled":"1","external_id":{"arxiv":["1309.2399"],"isi":["000485392800004"]},"oa":1,"status":"public","intvolume":"        91","date_updated":"2023-08-24T14:30:43Z","isi":1,"doi":"10.1002/jgt.22436","day":"01","publication_identifier":{"issn":["03649024"]},"title":"Extending partial representations of circle graphs","issue":"4","year":"2019","publisher":"Wiley","project":[{"name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"291734"}],"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1309.2399"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","ec_funded":1,"abstract":[{"lang":"eng","text":"The partial representation extension problem is a recently introduced generalization of the recognition problem. A circle graph is an intersection graph of chords of a circle. We study the partial representation extension problem for circle graphs, where the input consists of a graph G and a partial representation R′ giving some predrawn chords that represent an induced subgraph of G. The question is whether one can extend R′ to a representation R of the entire graph G, that is, whether one can draw the remaining chords into a partially predrawn representation to obtain a representation of G. Our main result is an O(n3) time algorithm for partial representation extension of circle graphs, where n is the number of vertices. To show this, we describe the structure of all representations of a circle graph using split decomposition. This can be of independent interest."}],"_id":"5790","month":"08","language":[{"iso":"eng"}],"author":[{"last_name":"Chaplick","first_name":"Steven","full_name":"Chaplick, Steven"},{"orcid":"0000-0001-8485-1774","id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87","first_name":"Radoslav","full_name":"Fulek, Radoslav","last_name":"Fulek"},{"full_name":"Klavík, Pavel","first_name":"Pavel","last_name":"Klavík"}],"type":"journal_article","scopus_import":"1","article_processing_charge":"No","publication":"Journal of Graph Theory","volume":91,"date_created":"2018-12-30T22:59:15Z","page":"365-394"},{"citation":{"mla":"Asaoka, Yoichi, et al. “Studying YAP-Mediated 3D Morphogenesis Using Fish Embryos and Human Spheroids.” <i>The Hippo Pathway</i>, edited by Alexander Hergovich, vol. 1893, Springer, 2019, pp. 167–81, doi:<a href=\"https://doi.org/10.1007/978-1-4939-8910-2_14\">10.1007/978-1-4939-8910-2_14</a>.","short":"Y. Asaoka, H. Morita, H. Furumoto, C.-P.J. Heisenberg, M. Furutani-Seiki, in:, A. Hergovich (Ed.), The Hippo Pathway, Springer, 2019, pp. 167–181.","ieee":"Y. Asaoka, H. Morita, H. Furumoto, C.-P. J. Heisenberg, and M. Furutani-Seiki, “Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids,” in <i>The hippo pathway</i>, vol. 1893, A. Hergovich, Ed. Springer, 2019, pp. 167–181.","ista":"Asaoka Y, Morita H, Furumoto H, Heisenberg C-PJ, Furutani-Seiki M. 2019.Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids. In: The hippo pathway. MIMB, vol. 1893, 167–181.","ama":"Asaoka Y, Morita H, Furumoto H, Heisenberg C-PJ, Furutani-Seiki M. Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids. In: Hergovich A, ed. <i>The Hippo Pathway</i>. Vol 1893. Methods in Molecular Biology. Springer; 2019:167-181. doi:<a href=\"https://doi.org/10.1007/978-1-4939-8910-2_14\">10.1007/978-1-4939-8910-2_14</a>","apa":"Asaoka, Y., Morita, H., Furumoto, H., Heisenberg, C.-P. J., &#38; Furutani-Seiki, M. (2019). Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids. In A. Hergovich (Ed.), <i>The hippo pathway</i> (Vol. 1893, pp. 167–181). Springer. <a href=\"https://doi.org/10.1007/978-1-4939-8910-2_14\">https://doi.org/10.1007/978-1-4939-8910-2_14</a>","chicago":"Asaoka, Yoichi, Hitoshi Morita, Hiroko Furumoto, Carl-Philipp J Heisenberg, and Makoto Furutani-Seiki. “Studying YAP-Mediated 3D Morphogenesis Using Fish Embryos and Human Spheroids.” In <i>The Hippo Pathway</i>, edited by Alexander Hergovich, 1893:167–81. Methods in Molecular Biology. Springer, 2019. <a href=\"https://doi.org/10.1007/978-1-4939-8910-2_14\">https://doi.org/10.1007/978-1-4939-8910-2_14</a>."},"publication_status":"published","abstract":[{"lang":"eng","text":"The transcription coactivator, Yes-associated protein (YAP), which is a nuclear effector of the Hippo signaling pathway, has been shown to be a mechano-transducer. By using mutant fish and human 3D spheroids, we have recently demonstrated that YAP is also a mechano-effector. YAP functions in three-dimensional (3D) morphogenesis of organ and global body shape by controlling actomyosin-mediated tissue tension. In this chapter, we present a platform that links the findings in fish embryos with human cells. The protocols for analyzing tissue tension-mediated global body shape/organ morphogenesis in vivo and ex vivo using medaka fish embryos and in vitro using human cell spheroids represent useful tools for unraveling the molecular mechanisms by which YAP functions in regulating global body/organ morphogenesis."}],"editor":[{"full_name":"Hergovich, Alexander","first_name":"Alexander","last_name":"Hergovich"}],"_id":"5793","alternative_title":["MIMB"],"quality_controlled":"1","publisher":"Springer","oa_version":"None","series_title":"Methods in Molecular Biology","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"CaHe"}],"date_published":"2019-01-01T00:00:00Z","day":"01","doi":"10.1007/978-1-4939-8910-2_14","volume":1893,"publication_identifier":{"isbn":["978-1-4939-8909-6"]},"title":"Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids","year":"2019","date_created":"2019-01-06T22:59:11Z","page":"167-181","language":[{"iso":"eng"}],"author":[{"full_name":"Asaoka, Yoichi","first_name":"Yoichi","last_name":"Asaoka"},{"first_name":"Hitoshi","full_name":"Morita, Hitoshi","last_name":"Morita"},{"first_name":"Hiroko","full_name":"Furumoto, Hiroko","last_name":"Furumoto"},{"full_name":"Heisenberg, Carl-Philipp J","first_name":"Carl-Philipp J","last_name":"Heisenberg","orcid":"0000-0002-0912-4566","id":"39427864-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Furutani-Seiki","full_name":"Furutani-Seiki, Makoto","first_name":"Makoto"}],"month":"01","type":"book_chapter","status":"public","scopus_import":1,"intvolume":"      1893","publication":"The hippo pathway","date_updated":"2021-01-12T08:03:30Z"},{"citation":{"short":"B. Kavcic, A. Sakashita, H. Noguchi, P. Ziherl, Soft Matter 15 (2019) 602–614.","mla":"Kavcic, Bor, et al. “Limiting Shapes of Confined Lipid Vesicles.” <i>Soft Matter</i>, vol. 15, no. 4, Royal Society of Chemistry, 2019, pp. 602–14, doi:<a href=\"https://doi.org/10.1039/c8sm01956h\">10.1039/c8sm01956h</a>.","ieee":"B. Kavcic, A. Sakashita, H. Noguchi, and P. Ziherl, “Limiting shapes of confined lipid vesicles,” <i>Soft Matter</i>, vol. 15, no. 4. Royal Society of Chemistry, pp. 602–614, 2019.","ista":"Kavcic B, Sakashita A, Noguchi H, Ziherl P. 2019. Limiting shapes of confined lipid vesicles. Soft Matter. 15(4), 602–614.","apa":"Kavcic, B., Sakashita, A., Noguchi, H., &#38; Ziherl, P. (2019). Limiting shapes of confined lipid vesicles. <i>Soft Matter</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c8sm01956h\">https://doi.org/10.1039/c8sm01956h</a>","ama":"Kavcic B, Sakashita A, Noguchi H, Ziherl P. Limiting shapes of confined lipid vesicles. <i>Soft Matter</i>. 2019;15(4):602-614. doi:<a href=\"https://doi.org/10.1039/c8sm01956h\">10.1039/c8sm01956h</a>","chicago":"Kavcic, Bor, A. Sakashita, H. Noguchi, and P. Ziherl. “Limiting Shapes of Confined Lipid Vesicles.” <i>Soft Matter</i>. Royal Society of Chemistry, 2019. <a href=\"https://doi.org/10.1039/c8sm01956h\">https://doi.org/10.1039/c8sm01956h</a>."},"publication_status":"published","quality_controlled":"1","department":[{"_id":"GaTk"}],"oa_version":"Submitted Version","file":[{"file_name":"lmt_sftmtr_V8.pdf","access_level":"open_access","relation":"main_file","checksum":"614c337d6424ccd3d48d1b1f9513510d","file_size":5370762,"date_updated":"2020-10-09T11:00:05Z","creator":"bkavcic","file_id":"8641","content_type":"application/pdf","date_created":"2020-10-09T11:00:05Z","success":1}],"article_type":"original","date_published":"2019-01-10T00:00:00Z","has_accepted_license":"1","title":"Limiting shapes of confined lipid vesicles","issue":"4","publication_identifier":{"issn":["1744-683X"],"eissn":["1744-6848"]},"tmp":{"short":"CC BY-NC-ND (3.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported (CC BY-NC-ND 3.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/3.0/legalcode","image":"/images/cc_by_nc_nd.png"},"day":"10","doi":"10.1039/c8sm01956h","isi":1,"year":"2019","oa":1,"external_id":{"pmid":["30629082"],"isi":["000457329700003"]},"license":"https://creativecommons.org/licenses/by-nc-nd/3.0/","date_updated":"2023-09-13T08:47:16Z","intvolume":"        15","status":"public","abstract":[{"text":"We theoretically study the shapes of lipid vesicles confined to a spherical cavity, elaborating a framework based on the so-called limiting shapes constructed from geometrically simple structural elements such as double-membrane walls and edges. Partly inspired by numerical results, the proposed non-compartmentalized and compartmentalized limiting shapes are arranged in the bilayer-couple phase diagram which is then compared to its free-vesicle counterpart. We also compute the area-difference-elasticity phase diagram of the limiting shapes and we use it to interpret shape transitions experimentally observed in vesicles confined within another vesicle. The limiting-shape framework may be generalized to theoretically investigate the structure of certain cell organelles such as the mitochondrion.","lang":"eng"}],"pmid":1,"_id":"5817","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publisher":"Royal Society of Chemistry","file_date_updated":"2020-10-09T11:00:05Z","volume":15,"ddc":["530"],"page":"602-614","date_created":"2019-01-11T07:37:47Z","type":"journal_article","author":[{"last_name":"Kavcic","full_name":"Kavcic, Bor","first_name":"Bor","id":"350F91D2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6041-254X"},{"last_name":"Sakashita","full_name":"Sakashita, A.","first_name":"A."},{"last_name":"Noguchi","first_name":"H.","full_name":"Noguchi, H."},{"last_name":"Ziherl","full_name":"Ziherl, P.","first_name":"P."}],"language":[{"iso":"eng"}],"month":"01","publication":"Soft Matter","article_processing_charge":"No","scopus_import":"1"},{"year":"2019","isi":1,"day":"02","doi":"10.1016/j.neuron.2018.11.015","title":"Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze","publication_identifier":{"issn":["10974199"]},"issue":"1","status":"public","intvolume":"       101","date_updated":"2023-09-07T12:06:37Z","external_id":{"isi":["000454791500014"]},"oa":1,"quality_controlled":"1","publication_status":"published","citation":{"chicago":"Xu, Haibing, Peter Baracskay, Joseph O’Neill, and Jozsef L Csicsvari. “Assembly Responses of Hippocampal CA1 Place Cells Predict Learned Behavior in Goal-Directed Spatial Tasks on the Radial Eight-Arm Maze.” <i>Neuron</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.neuron.2018.11.015\">https://doi.org/10.1016/j.neuron.2018.11.015</a>.","ama":"Xu H, Baracskay P, O’Neill J, Csicsvari JL. Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze. <i>Neuron</i>. 2019;101(1):119-132.e4. doi:<a href=\"https://doi.org/10.1016/j.neuron.2018.11.015\">10.1016/j.neuron.2018.11.015</a>","apa":"Xu, H., Baracskay, P., O’Neill, J., &#38; Csicsvari, J. L. (2019). Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2018.11.015\">https://doi.org/10.1016/j.neuron.2018.11.015</a>","ista":"Xu H, Baracskay P, O’Neill J, Csicsvari JL. 2019. Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze. Neuron. 101(1), 119–132.e4.","ieee":"H. Xu, P. Baracskay, J. O’Neill, and J. L. Csicsvari, “Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze,” <i>Neuron</i>, vol. 101, no. 1. Elsevier, p. 119–132.e4, 2019.","short":"H. Xu, P. Baracskay, J. O’Neill, J.L. Csicsvari, Neuron 101 (2019) 119–132.e4.","mla":"Xu, Haibing, et al. “Assembly Responses of Hippocampal CA1 Place Cells Predict Learned Behavior in Goal-Directed Spatial Tasks on the Radial Eight-Arm Maze.” <i>Neuron</i>, vol. 101, no. 1, Elsevier, 2019, p. 119–132.e4, doi:<a href=\"https://doi.org/10.1016/j.neuron.2018.11.015\">10.1016/j.neuron.2018.11.015</a>."},"date_published":"2019-01-02T00:00:00Z","article_type":"original","oa_version":"Published Version","department":[{"_id":"JoCs"}],"date_created":"2019-01-13T22:59:10Z","page":"119-132.e4","volume":101,"related_material":{"record":[{"status":"public","id":"837","relation":"dissertation_contains"}],"link":[{"url":"https://ist.ac.at/en/news/reading-rats-minds/","description":"News on IST Homepage","relation":"press_release"}]},"scopus_import":"1","article_processing_charge":"No","publication":"Neuron","month":"01","language":[{"iso":"eng"}],"author":[{"id":"310349D0-F248-11E8-B48F-1D18A9856A87","first_name":"Haibing","full_name":"Xu, Haibing","last_name":"Xu"},{"first_name":"Peter","full_name":"Baracskay, Peter","last_name":"Baracskay","id":"361CC00E-F248-11E8-B48F-1D18A9856A87"},{"id":"426376DC-F248-11E8-B48F-1D18A9856A87","last_name":"O'Neill","first_name":"Joseph","full_name":"O'Neill, Joseph"},{"orcid":"0000-0002-5193-4036","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","full_name":"Csicsvari, Jozsef L","first_name":"Jozsef L","last_name":"Csicsvari"}],"type":"journal_article","_id":"5828","abstract":[{"text":"Hippocampus is needed for both spatial working and reference memories. Here, using a radial eight-arm maze, we examined how the combined demand on these memories influenced CA1 place cell assemblies while reference memories were partially updated. This was contrasted with control tasks requiring only working memory or the update of reference memory. Reference memory update led to the reward-directed place field shifts at newly rewarded arms and to the gradual strengthening of firing in passes between newly rewarded arms but not between those passes that included a familiar-rewarded arm. At the maze center, transient network synchronization periods preferentially replayed trajectories of the next chosen arm in reference memory tasks but the previously visited arm in the working memory task. Hence, reference memory demand was uniquely associated with a gradual, goal novelty-related reorganization of place cell assemblies and with trajectory replay that reflected the animal's decision of which arm to visit next.","lang":"eng"}],"ec_funded":1,"publisher":"Elsevier","main_file_link":[{"open_access":"1","url":"https://www.doi.org/10.1016/j.neuron.2018.11.015"}],"project":[{"name":"Memory-related information processing in neuronal circuits of the hippocampus and entorhinal cortex","_id":"257A4776-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"281511"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8"},{"ec_funded":1,"publisher":"Springer","project":[{"_id":"25C6DC12-B435-11E9-9278-68D0E5697425","name":"Analysis of quantum many-body systems","grant_number":"694227","call_identifier":"H2020"},{"call_identifier":"FWF","grant_number":"P27533_N27","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems","_id":"25C878CE-B435-11E9-9278-68D0E5697425"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"5856","abstract":[{"lang":"eng","text":"We give a bound on the ground-state energy of a system of N non-interacting fermions in a three-dimensional cubic box interacting with an impurity particle via point interactions. We show that the change in energy compared to the system in the absence of the impurity is bounded in terms of the gas density and the scattering length of the interaction, independently of N. Our bound holds as long as the ratio of the mass of the impurity to the one of the gas particles is larger than a critical value m∗ ∗≈ 0.36 , which is the same regime for which we recently showed stability of the system."}],"scopus_import":"1","article_processing_charge":"Yes (via OA deal)","publication":"Annales Henri Poincare","author":[{"full_name":"Moser, Thomas","first_name":"Thomas","last_name":"Moser","id":"2B5FC9A4-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Robert","full_name":"Seiringer, Robert","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521"}],"language":[{"iso":"eng"}],"month":"04","type":"journal_article","date_created":"2019-01-20T22:59:17Z","page":"1325–1365","ddc":["530"],"volume":20,"file_date_updated":"2020-07-14T12:47:12Z","related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"52"}]},"date_published":"2019-04-01T00:00:00Z","article_type":"original","oa_version":"Published Version","file":[{"date_updated":"2020-07-14T12:47:12Z","relation":"main_file","access_level":"open_access","checksum":"255e42f957a8e2b10aad2499c750a8d6","file_size":859846,"file_name":"2019_Annales_Moser.pdf","date_created":"2019-01-28T15:27:17Z","file_id":"5894","content_type":"application/pdf","creator":"dernst"}],"department":[{"_id":"RoSe"}],"arxiv":1,"quality_controlled":"1","publication_status":"published","citation":{"ista":"Moser T, Seiringer R. 2019. Energy contribution of a point-interacting impurity in a Fermi gas. Annales Henri Poincare. 20(4), 1325–1365.","short":"T. Moser, R. Seiringer, Annales Henri Poincare 20 (2019) 1325–1365.","mla":"Moser, Thomas, and Robert Seiringer. “Energy Contribution of a Point-Interacting Impurity in a Fermi Gas.” <i>Annales Henri Poincare</i>, vol. 20, no. 4, Springer, 2019, pp. 1325–1365, doi:<a href=\"https://doi.org/10.1007/s00023-018-00757-0\">10.1007/s00023-018-00757-0</a>.","ieee":"T. Moser and R. Seiringer, “Energy contribution of a point-interacting impurity in a Fermi gas,” <i>Annales Henri Poincare</i>, vol. 20, no. 4. Springer, pp. 1325–1365, 2019.","chicago":"Moser, Thomas, and Robert Seiringer. “Energy Contribution of a Point-Interacting Impurity in a Fermi Gas.” <i>Annales Henri Poincare</i>. Springer, 2019. <a href=\"https://doi.org/10.1007/s00023-018-00757-0\">https://doi.org/10.1007/s00023-018-00757-0</a>.","ama":"Moser T, Seiringer R. Energy contribution of a point-interacting impurity in a Fermi gas. <i>Annales Henri Poincare</i>. 2019;20(4):1325–1365. doi:<a href=\"https://doi.org/10.1007/s00023-018-00757-0\">10.1007/s00023-018-00757-0</a>","apa":"Moser, T., &#38; Seiringer, R. (2019). Energy contribution of a point-interacting impurity in a Fermi gas. <i>Annales Henri Poincare</i>. Springer. <a href=\"https://doi.org/10.1007/s00023-018-00757-0\">https://doi.org/10.1007/s00023-018-00757-0</a>"},"status":"public","intvolume":"        20","date_updated":"2023-09-07T12:37:42Z","external_id":{"arxiv":["1807.00739"],"isi":["000462444300008"]},"oa":1,"year":"2019","isi":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"doi":"10.1007/s00023-018-00757-0","day":"01","has_accepted_license":"1","title":"Energy contribution of a point-interacting impurity in a Fermi gas","issue":"4","publication_identifier":{"issn":["14240637"]}},{"year":"2019","day":"30","doi":"10.1016/j.dam.2018.12.025","isi":1,"publication_identifier":{"issn":["0166218X"]},"title":"Thrackles: An improved upper bound","issue":"4","intvolume":"       259","status":"public","date_updated":"2023-08-24T14:39:33Z","external_id":{"arxiv":["1708.08037"],"isi":["000466061100020"]},"oa":1,"quality_controlled":"1","arxiv":1,"publication_status":"published","citation":{"chicago":"Fulek, Radoslav, and János Pach. “Thrackles: An Improved Upper Bound.” <i>Discrete Applied Mathematics</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.dam.2018.12.025\">https://doi.org/10.1016/j.dam.2018.12.025</a>.","ama":"Fulek R, Pach J. Thrackles: An improved upper bound. <i>Discrete Applied Mathematics</i>. 2019;259(4):266-231. doi:<a href=\"https://doi.org/10.1016/j.dam.2018.12.025\">10.1016/j.dam.2018.12.025</a>","apa":"Fulek, R., &#38; Pach, J. (2019). Thrackles: An improved upper bound. <i>Discrete Applied Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.dam.2018.12.025\">https://doi.org/10.1016/j.dam.2018.12.025</a>","ista":"Fulek R, Pach J. 2019. Thrackles: An improved upper bound. Discrete Applied Mathematics. 259(4), 266–231.","mla":"Fulek, Radoslav, and János Pach. “Thrackles: An Improved Upper Bound.” <i>Discrete Applied Mathematics</i>, vol. 259, no. 4, Elsevier, 2019, pp. 266–231, doi:<a href=\"https://doi.org/10.1016/j.dam.2018.12.025\">10.1016/j.dam.2018.12.025</a>.","short":"R. Fulek, J. Pach, Discrete Applied Mathematics 259 (2019) 266–231.","ieee":"R. Fulek and J. Pach, “Thrackles: An improved upper bound,” <i>Discrete Applied Mathematics</i>, vol. 259, no. 4. Elsevier, pp. 266–231, 2019."},"article_type":"original","date_published":"2019-04-30T00:00:00Z","oa_version":"Preprint","department":[{"_id":"UlWa"}],"date_created":"2019-01-20T22:59:17Z","page":"266-231","related_material":{"record":[{"relation":"earlier_version","id":"433","status":"public"}]},"volume":259,"scopus_import":"1","publication":"Discrete Applied Mathematics","article_processing_charge":"No","type":"journal_article","language":[{"iso":"eng"}],"month":"04","author":[{"orcid":"0000-0001-8485-1774","id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87","full_name":"Fulek, Radoslav","first_name":"Radoslav","last_name":"Fulek"},{"first_name":"János","full_name":"Pach, János","last_name":"Pach"}],"_id":"5857","abstract":[{"text":"A thrackle is a graph drawn in the plane so that every pair of its edges meet exactly once: either at a common end vertex or in a proper crossing. We prove that any thrackle of n vertices has at most 1.3984n edges. Quasi-thrackles are defined similarly, except that every pair of edges that do not share a vertex are allowed to cross an odd number of times. It is also shown that the maximum number of edges of a quasi-thrackle on n vertices is [Formula presented](n−1), and that this bound is best possible for infinitely many values of n.","lang":"eng"}],"project":[{"_id":"261FA626-B435-11E9-9278-68D0E5697425","name":"Eliminating intersections in drawings of graphs","grant_number":"M02281","call_identifier":"FWF"}],"main_file_link":[{"url":"https://arxiv.org/abs/1708.08037","open_access":"1"}],"publisher":"Elsevier","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8"},{"_id":"5878","abstract":[{"text":"We consider the motion of a droplet bouncing on a vibrating bath of the same fluid in the presence of a central potential. We formulate a rotation symmetry-reduced description of this system, which allows for the straightforward application of dynamical systems theory tools. As an illustration of the utility of the symmetry reduction, we apply it to a model of the pilot-wave system with a central harmonic force. We begin our analysis by identifying local bifurcations and the onset of chaos. We then describe the emergence of chaotic regions and their merging bifurcations, which lead to the formation of a global attractor. In this final regime, the droplet’s angular momentum spontaneously changes its sign as observed in the experiments of Perrard et al.","lang":"eng"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publisher":"AIP Publishing","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1812.09011"}],"date_created":"2019-01-23T08:35:09Z","volume":29,"related_material":{"link":[{"relation":"erratum","url":"https://aip.scitation.org/doi/abs/10.1063/1.5097157"}]},"article_processing_charge":"No","publication":"Chaos: An Interdisciplinary Journal of Nonlinear Science","scopus_import":"1","language":[{"iso":"eng"}],"month":"01","author":[{"first_name":"Nazmi B","full_name":"Budanur, Nazmi B","last_name":"Budanur","id":"3EA1010E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0423-5010"},{"last_name":"Fleury","first_name":"Marc","full_name":"Fleury, Marc"}],"type":"journal_article","arxiv":1,"quality_controlled":"1","publication_status":"published","citation":{"apa":"Budanur, N. B., &#38; Fleury, M. (2019). State space geometry of the chaotic pilot-wave hydrodynamics. <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/1.5058279\">https://doi.org/10.1063/1.5058279</a>","ama":"Budanur NB, Fleury M. State space geometry of the chaotic pilot-wave hydrodynamics. <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>. 2019;29(1). doi:<a href=\"https://doi.org/10.1063/1.5058279\">10.1063/1.5058279</a>","chicago":"Budanur, Nazmi B, and Marc Fleury. “State Space Geometry of the Chaotic Pilot-Wave Hydrodynamics.” <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>. AIP Publishing, 2019. <a href=\"https://doi.org/10.1063/1.5058279\">https://doi.org/10.1063/1.5058279</a>.","short":"N.B. Budanur, M. Fleury, Chaos: An Interdisciplinary Journal of Nonlinear Science 29 (2019).","mla":"Budanur, Nazmi B., and Marc Fleury. “State Space Geometry of the Chaotic Pilot-Wave Hydrodynamics.” <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>, vol. 29, no. 1, 013122, AIP Publishing, 2019, doi:<a href=\"https://doi.org/10.1063/1.5058279\">10.1063/1.5058279</a>.","ieee":"N. B. Budanur and M. Fleury, “State space geometry of the chaotic pilot-wave hydrodynamics,” <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>, vol. 29, no. 1. AIP Publishing, 2019.","ista":"Budanur NB, Fleury M. 2019. State space geometry of the chaotic pilot-wave hydrodynamics. Chaos: An Interdisciplinary Journal of Nonlinear Science. 29(1), 013122."},"date_published":"2019-01-22T00:00:00Z","article_type":"original","department":[{"_id":"BjHo"}],"oa_version":"Preprint","year":"2019","title":"State space geometry of the chaotic pilot-wave hydrodynamics","publication_identifier":{"issn":["1054-1500"],"eissn":["1089-7682"]},"issue":"1","isi":1,"day":"22","article_number":"013122","doi":"10.1063/1.5058279","date_updated":"2023-08-25T10:16:11Z","status":"public","intvolume":"        29","oa":1,"external_id":{"isi":["000457409100028"],"arxiv":["1812.09011"]}},{"date_published":"2019-01-18T00:00:00Z","file":[{"creator":"dernst","date_created":"2019-01-29T08:32:57Z","content_type":"application/pdf","file_id":"5896","file_size":1309966,"checksum":"178964744b636a6f036372f4f090a657","relation":"main_file","access_level":"open_access","file_name":"2019_MolecularPhysics_Li.pdf","date_updated":"2020-07-14T12:47:13Z"}],"oa_version":"Published Version","department":[{"_id":"MiLe"}],"quality_controlled":"1","citation":{"ama":"Li X, Bighin G, Yakaboylu E, Lemeshko M. Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon. <i>Molecular Physics</i>. 2019. doi:<a href=\"https://doi.org/10.1080/00268976.2019.1567852\">10.1080/00268976.2019.1567852</a>","apa":"Li, X., Bighin, G., Yakaboylu, E., &#38; Lemeshko, M. (2019). Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon. <i>Molecular Physics</i>. Taylor and Francis. <a href=\"https://doi.org/10.1080/00268976.2019.1567852\">https://doi.org/10.1080/00268976.2019.1567852</a>","chicago":"Li, Xiang, Giacomo Bighin, Enderalp Yakaboylu, and Mikhail Lemeshko. “Variational Approaches to Quantum Impurities: From the Fröhlich Polaron to the Angulon.” <i>Molecular Physics</i>. Taylor and Francis, 2019. <a href=\"https://doi.org/10.1080/00268976.2019.1567852\">https://doi.org/10.1080/00268976.2019.1567852</a>.","ieee":"X. Li, G. Bighin, E. Yakaboylu, and M. Lemeshko, “Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon,” <i>Molecular Physics</i>. Taylor and Francis, 2019.","mla":"Li, Xiang, et al. “Variational Approaches to Quantum Impurities: From the Fröhlich Polaron to the Angulon.” <i>Molecular Physics</i>, Taylor and Francis, 2019, doi:<a href=\"https://doi.org/10.1080/00268976.2019.1567852\">10.1080/00268976.2019.1567852</a>.","short":"X. Li, G. Bighin, E. Yakaboylu, M. Lemeshko, Molecular Physics (2019).","ista":"Li X, Bighin G, Yakaboylu E, Lemeshko M. 2019. Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon. Molecular Physics."},"publication_status":"published","status":"public","date_updated":"2023-09-07T13:16:42Z","external_id":{"isi":["000474641400008"]},"oa":1,"year":"2019","day":"18","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"doi":"10.1080/00268976.2019.1567852","isi":1,"title":"Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon","publication_identifier":{"issn":["00268976"]},"has_accepted_license":"1","ec_funded":1,"project":[{"grant_number":"P29902","call_identifier":"FWF","_id":"26031614-B435-11E9-9278-68D0E5697425","name":"Quantum rotations in the presence of a many-body environment"},{"grant_number":"291734","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme"}],"publisher":"Taylor and Francis","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"5886","abstract":[{"lang":"eng","text":"Problems involving quantum impurities, in which one or a few particles are interacting with a macroscopic environment, represent a pervasive paradigm, spanning across atomic, molecular, and condensed-matter physics. In this paper we introduce new variational approaches to quantum impurities and apply them to the Fröhlich polaron–a quasiparticle formed out of an electron (or other point-like impurity) in a polar medium, and to the angulon–a quasiparticle formed out of a rotating molecule in a bosonic bath. We benchmark these approaches against established theories, evaluating their accuracy as a function of the impurity-bath coupling."}],"scopus_import":"1","publication":"Molecular Physics","article_processing_charge":"No","type":"journal_article","month":"01","language":[{"iso":"eng"}],"author":[{"id":"4B7E523C-F248-11E8-B48F-1D18A9856A87","first_name":"Xiang","full_name":"Li, Xiang","last_name":"Li"},{"orcid":"0000-0001-8823-9777","id":"4CA96FD4-F248-11E8-B48F-1D18A9856A87","full_name":"Bighin, Giacomo","first_name":"Giacomo","last_name":"Bighin"},{"last_name":"Yakaboylu","full_name":"Yakaboylu, Enderalp","first_name":"Enderalp","orcid":"0000-0001-5973-0874","id":"38CB71F6-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Lemeshko","full_name":"Lemeshko, Mikhail","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802"}],"date_created":"2019-01-27T22:59:10Z","related_material":{"record":[{"relation":"dissertation_contains","id":"8958","status":"public"}]},"file_date_updated":"2020-07-14T12:47:13Z","ddc":["530"]},{"oa_version":"Preprint","department":[{"_id":"KrPi"}],"date_published":"2019-01-01T00:00:00Z","article_type":"original","citation":{"ista":"Demay G, Gazi P, Maurer U, Tackmann B. 2019. Per-session security: Password-based cryptography revisited. Journal of Computer Security. 27(1), 75–111.","ieee":"G. Demay, P. Gazi, U. Maurer, and B. Tackmann, “Per-session security: Password-based cryptography revisited,” <i>Journal of Computer Security</i>, vol. 27, no. 1. IOS Press, pp. 75–111, 2019.","short":"G. Demay, P. Gazi, U. Maurer, B. Tackmann, Journal of Computer Security 27 (2019) 75–111.","mla":"Demay, Gregory, et al. “Per-Session Security: Password-Based Cryptography Revisited.” <i>Journal of Computer Security</i>, vol. 27, no. 1, IOS Press, 2019, pp. 75–111, doi:<a href=\"https://doi.org/10.3233/JCS-181131\">10.3233/JCS-181131</a>.","chicago":"Demay, Gregory, Peter Gazi, Ueli Maurer, and Bjorn Tackmann. “Per-Session Security: Password-Based Cryptography Revisited.” <i>Journal of Computer Security</i>. IOS Press, 2019. <a href=\"https://doi.org/10.3233/JCS-181131\">https://doi.org/10.3233/JCS-181131</a>.","ama":"Demay G, Gazi P, Maurer U, Tackmann B. Per-session security: Password-based cryptography revisited. <i>Journal of Computer Security</i>. 2019;27(1):75-111. doi:<a href=\"https://doi.org/10.3233/JCS-181131\">10.3233/JCS-181131</a>","apa":"Demay, G., Gazi, P., Maurer, U., &#38; Tackmann, B. (2019). Per-session security: Password-based cryptography revisited. <i>Journal of Computer Security</i>. IOS Press. <a href=\"https://doi.org/10.3233/JCS-181131\">https://doi.org/10.3233/JCS-181131</a>"},"publication_status":"published","quality_controlled":"1","oa":1,"status":"public","intvolume":"        27","date_updated":"2021-01-12T08:05:08Z","doi":"10.3233/JCS-181131","day":"1","publication_identifier":{"issn":["0926227X"]},"issue":"1","title":"Per-session security: Password-based cryptography revisited","year":"2019","publisher":"IOS Press","main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2016/166"}],"project":[{"call_identifier":"H2020","grant_number":"682815","name":"Teaching Old Crypto New Tricks","_id":"258AA5B2-B435-11E9-9278-68D0E5697425"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ec_funded":1,"abstract":[{"lang":"eng","text":"Cryptographic security is usually defined as a guarantee that holds except when a bad event with negligible probability occurs, and nothing is guaranteed in that bad case. However, in settings where such failure can happen with substantial probability, one needs to provide guarantees even for the bad case. A typical example is where a (possibly weak) password is used instead of a secure cryptographic key to protect a session, the bad event being that the adversary correctly guesses the password. In a situation with multiple such sessions, a per-session guarantee is desired: any session for which the password has not been guessed remains secure, independently of whether other sessions have been compromised. A new formalism for stating such gracefully degrading security guarantees is introduced and applied to analyze the examples of password-based message authentication and password-based encryption. While a natural per-message guarantee is achieved for authentication, the situation of password-based encryption is more delicate: a per-session confidentiality guarantee only holds against attackers for which the distribution of password-guessing effort over the sessions is known in advance. In contrast, for more general attackers without such a restriction, a strong, composable notion of security cannot be achieved."}],"_id":"5887","author":[{"full_name":"Demay, Gregory","first_name":"Gregory","last_name":"Demay"},{"id":"3E0BFE38-F248-11E8-B48F-1D18A9856A87","full_name":"Gazi, Peter","first_name":"Peter","last_name":"Gazi"},{"last_name":"Maurer","full_name":"Maurer, Ueli","first_name":"Ueli"},{"first_name":"Bjorn","full_name":"Tackmann, Bjorn","last_name":"Tackmann"}],"month":"01","language":[{"iso":"eng"}],"type":"journal_article","scopus_import":"1","article_processing_charge":"No","publication":"Journal of Computer Security","volume":27,"date_created":"2019-01-27T22:59:10Z","page":"75-111"},{"abstract":[{"lang":"eng","text":"We introduce a simple, exactly solvable strong-randomness renormalization group (RG) model for the many-body localization (MBL) transition in one dimension. Our approach relies on a family of RG flows parametrized by the asymmetry between thermal and localized phases. We identify the physical MBL transition in the limit of maximal asymmetry, reflecting the instability of MBL against rare thermal inclusions. We find a critical point that is localized with power-law distributed thermal inclusions. The typical size of critical inclusions remains finite at the transition, while the average size is logarithmically diverging. We propose a two-parameter scaling theory for the many-body localization transition that falls into the Kosterlitz-Thouless universality class, with the MBL phase corresponding to a stable line of fixed points with multifractal behavior."}],"_id":"5906","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"American Physical Society","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1807.04285"}],"volume":122,"date_created":"2019-02-01T08:22:28Z","author":[{"full_name":"Goremykina, Anna","first_name":"Anna","last_name":"Goremykina"},{"full_name":"Vasseur, Romain","first_name":"Romain","last_name":"Vasseur"},{"id":"47809E7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2399-5827","last_name":"Serbyn","full_name":"Serbyn, Maksym","first_name":"Maksym"}],"language":[{"iso":"eng"}],"month":"02","type":"journal_article","article_processing_charge":"No","publication":"Physical Review Letters","scopus_import":"1","publication_status":"published","citation":{"ieee":"A. Goremykina, R. Vasseur, and M. Serbyn, “Analytically solvable renormalization group for the many-body localization transition,” <i>Physical Review Letters</i>, vol. 122, no. 4. American Physical Society, 2019.","mla":"Goremykina, Anna, et al. “Analytically Solvable Renormalization Group for the Many-Body Localization Transition.” <i>Physical Review Letters</i>, vol. 122, no. 4, 040601, American Physical Society, 2019, doi:<a href=\"https://doi.org/10.1103/physrevlett.122.040601\">10.1103/physrevlett.122.040601</a>.","short":"A. Goremykina, R. Vasseur, M. Serbyn, Physical Review Letters 122 (2019).","ista":"Goremykina A, Vasseur R, Serbyn M. 2019. Analytically solvable renormalization group for the many-body localization transition. Physical Review Letters. 122(4), 040601.","apa":"Goremykina, A., Vasseur, R., &#38; Serbyn, M. (2019). Analytically solvable renormalization group for the many-body localization transition. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevlett.122.040601\">https://doi.org/10.1103/physrevlett.122.040601</a>","ama":"Goremykina A, Vasseur R, Serbyn M. Analytically solvable renormalization group for the many-body localization transition. <i>Physical Review Letters</i>. 2019;122(4). doi:<a href=\"https://doi.org/10.1103/physrevlett.122.040601\">10.1103/physrevlett.122.040601</a>","chicago":"Goremykina, Anna, Romain Vasseur, and Maksym Serbyn. “Analytically Solvable Renormalization Group for the Many-Body Localization Transition.” <i>Physical Review Letters</i>. American Physical Society, 2019. <a href=\"https://doi.org/10.1103/physrevlett.122.040601\">https://doi.org/10.1103/physrevlett.122.040601</a>."},"arxiv":1,"quality_controlled":"1","department":[{"_id":"MaSe"}],"oa_version":"Preprint","date_published":"2019-02-01T00:00:00Z","article_type":"original","issue":"4","title":"Analytically solvable renormalization group for the many-body localization transition","publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"isi":1,"article_number":"040601","day":"01","doi":"10.1103/physrevlett.122.040601","year":"2019","oa":1,"external_id":{"isi":["000456783700001"],"arxiv":["1807.04285"]},"date_updated":"2024-02-28T13:13:38Z","status":"public","intvolume":"       122"},{"status":"public","intvolume":"         9","date_updated":"2023-08-24T14:33:16Z","external_id":{"isi":["000456392400012"]},"oa":1,"year":"2019","isi":1,"doi":"10.1038/s41598-018-36884-1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"article_number":"331","day":"23","has_accepted_license":"1","title":"N-glycans of the microalga Chlorella vulgaris are of the oligomannosidic type but highly methylated","issue":"1","date_published":"2019-01-23T00:00:00Z","file":[{"date_created":"2019-02-05T13:10:02Z","content_type":"application/pdf","file_id":"5923","creator":"dernst","date_updated":"2020-07-14T12:47:13Z","file_size":2124292,"checksum":"4129c7d7663d1f8a1edf8c4232372f66","relation":"main_file","access_level":"open_access","file_name":"2019_ScientificReports_Mocsai.pdf"}],"oa_version":"Published Version","department":[{"_id":"FlSc"}],"quality_controlled":"1","citation":{"chicago":"Mócsai, Réka, Rudolf Figl, Clemens Troschl, Richard Strasser, Elisabeth Svehla, Markus Windwarder, Andreas Thader, and Friedrich Altmann. “N-Glycans of the Microalga Chlorella Vulgaris Are of the Oligomannosidic Type but Highly Methylated.” <i>Scientific Reports</i>. Nature Publishing Group, 2019. <a href=\"https://doi.org/10.1038/s41598-018-36884-1\">https://doi.org/10.1038/s41598-018-36884-1</a>.","apa":"Mócsai, R., Figl, R., Troschl, C., Strasser, R., Svehla, E., Windwarder, M., … Altmann, F. (2019). N-glycans of the microalga Chlorella vulgaris are of the oligomannosidic type but highly methylated. <i>Scientific Reports</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41598-018-36884-1\">https://doi.org/10.1038/s41598-018-36884-1</a>","ama":"Mócsai R, Figl R, Troschl C, et al. N-glycans of the microalga Chlorella vulgaris are of the oligomannosidic type but highly methylated. <i>Scientific Reports</i>. 2019;9(1). doi:<a href=\"https://doi.org/10.1038/s41598-018-36884-1\">10.1038/s41598-018-36884-1</a>","ista":"Mócsai R, Figl R, Troschl C, Strasser R, Svehla E, Windwarder M, Thader A, Altmann F. 2019. N-glycans of the microalga Chlorella vulgaris are of the oligomannosidic type but highly methylated. Scientific Reports. 9(1), 331.","ieee":"R. Mócsai <i>et al.</i>, “N-glycans of the microalga Chlorella vulgaris are of the oligomannosidic type but highly methylated,” <i>Scientific Reports</i>, vol. 9, no. 1. Nature Publishing Group, 2019.","short":"R. Mócsai, R. Figl, C. Troschl, R. Strasser, E. Svehla, M. Windwarder, A. Thader, F. Altmann, Scientific Reports 9 (2019).","mla":"Mócsai, Réka, et al. “N-Glycans of the Microalga Chlorella Vulgaris Are of the Oligomannosidic Type but Highly Methylated.” <i>Scientific Reports</i>, vol. 9, no. 1, 331, Nature Publishing Group, 2019, doi:<a href=\"https://doi.org/10.1038/s41598-018-36884-1\">10.1038/s41598-018-36884-1</a>."},"publication_status":"published","scopus_import":"1","article_processing_charge":"No","publication":"Scientific Reports","language":[{"iso":"eng"}],"author":[{"first_name":"Réka","full_name":"Mócsai, Réka","last_name":"Mócsai"},{"first_name":"Rudolf","full_name":"Figl, Rudolf","last_name":"Figl"},{"last_name":"Troschl","first_name":"Clemens","full_name":"Troschl, Clemens"},{"full_name":"Strasser, Richard","first_name":"Richard","last_name":"Strasser"},{"last_name":"Svehla","full_name":"Svehla, Elisabeth","first_name":"Elisabeth"},{"first_name":"Markus","full_name":"Windwarder, Markus","last_name":"Windwarder"},{"id":"3A18A7B8-F248-11E8-B48F-1D18A9856A87","last_name":"Thader","first_name":"Andreas","full_name":"Thader, Andreas"},{"last_name":"Altmann","full_name":"Altmann, Friedrich","first_name":"Friedrich"}],"month":"01","type":"journal_article","date_created":"2019-02-03T22:59:13Z","volume":9,"ddc":["580"],"file_date_updated":"2020-07-14T12:47:13Z","publisher":"Nature Publishing Group","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"5907","abstract":[{"lang":"eng","text":"Microalgae of the genus Chlorella vulgaris are candidates for the production of lipids for biofuel production. Besides that, Chlorella vulgaris is marketed as protein and vitamin rich food additive. Its potential as a novel expression system for recombinant proteins inspired us to study its asparagine-linked oligosaccharides (N-glycans) by mass spectrometry, chromatography and gas chromatography. Oligomannosidic N-glycans with up to nine mannoses were the structures found in culture collection strains as well as several commercial products. These glycans co-eluted with plant N-glycans in the highly shape selective porous graphitic carbon chromatography. Thus, Chlorella vulgaris generates oligomannosidic N-glycans of the structural type known from land plants and animals. In fact, Man5 (Man5GlcNAc2) served as substrate for GlcNAc-transferase I and a trace of an endogenous structure with terminal GlcNAc was seen. The unusual more linear Man5 structure recently found on glycoproteins of Chlamydomonas reinhardtii occurred - if at all - in traces only. Notably, a majority of the oligomannosidic glycans was multiply O-methylated with 3-O-methyl and 3,6-di-O-methyl mannoses at the non-reducing termini. This modification has so far been neither found on plant nor vertebrate N-glycans. It’s possible immunogenicity raises concerns as to the use of C. vulgaris for production of pharmaceutical glycoproteins."}]},{"publication_status":"published","citation":{"ama":"Lee E, Vanneste S, Pérez-Sancho J, et al. Ionic stress enhances ER–PM connectivity via phosphoinositide-associated SYT1 contact site expansion in Arabidopsis. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. 2019;116(4):1420-1429. doi:<a href=\"https://doi.org/10.1073/pnas.1818099116\">10.1073/pnas.1818099116</a>","apa":"Lee, E., Vanneste, S., Pérez-Sancho, J., Benitez-Fuente, F., Strelau, M., Macho, A. P., … Rosado, A. (2019). Ionic stress enhances ER–PM connectivity via phosphoinositide-associated SYT1 contact site expansion in Arabidopsis. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1818099116\">https://doi.org/10.1073/pnas.1818099116</a>","chicago":"Lee, Eunkyoung, Steffen Vanneste, Jessica Pérez-Sancho, Francisco Benitez-Fuente, Matthew Strelau, Alberto P. Macho, Miguel A. Botella, Jiří Friml, and Abel Rosado. “Ionic Stress Enhances ER–PM Connectivity via Phosphoinositide-Associated SYT1 Contact Site Expansion in Arabidopsis.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences, 2019. <a href=\"https://doi.org/10.1073/pnas.1818099116\">https://doi.org/10.1073/pnas.1818099116</a>.","mla":"Lee, Eunkyoung, et al. “Ionic Stress Enhances ER–PM Connectivity via Phosphoinositide-Associated SYT1 Contact Site Expansion in Arabidopsis.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 116, no. 4, National Academy of Sciences, 2019, pp. 1420–29, doi:<a href=\"https://doi.org/10.1073/pnas.1818099116\">10.1073/pnas.1818099116</a>.","short":"E. Lee, S. Vanneste, J. Pérez-Sancho, F. Benitez-Fuente, M. Strelau, A.P. Macho, M.A. Botella, J. Friml, A. Rosado, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 1420–1429.","ieee":"E. Lee <i>et al.</i>, “Ionic stress enhances ER–PM connectivity via phosphoinositide-associated SYT1 contact site expansion in Arabidopsis,” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 116, no. 4. National Academy of Sciences, pp. 1420–1429, 2019.","ista":"Lee E, Vanneste S, Pérez-Sancho J, Benitez-Fuente F, Strelau M, Macho AP, Botella MA, Friml J, Rosado A. 2019. Ionic stress enhances ER–PM connectivity via phosphoinositide-associated SYT1 contact site expansion in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 116(4), 1420–1429."},"quality_controlled":"1","department":[{"_id":"JiFr"}],"oa_version":"Published Version","date_published":"2019-01-22T00:00:00Z","article_type":"original","issue":"4","title":"Ionic stress enhances ER–PM connectivity via phosphoinositide-associated SYT1 contact site expansion in Arabidopsis","isi":1,"doi":"10.1073/pnas.1818099116","day":"22","year":"2019","oa":1,"external_id":{"pmid":["30610176"],"isi":["000456336100050"]},"date_updated":"2023-08-24T14:31:09Z","status":"public","intvolume":"       116","abstract":[{"lang":"eng","text":"The interorganelle communication mediated by membrane contact sites (MCSs) is an evolutionary hallmark of eukaryotic cells. MCS connections enable the nonvesicular exchange of information between organelles and allow them to coordinate responses to changing cellular environments. In plants, the importance of MCS components in the responses to environmental stress has been widely established, but the molecular mechanisms regulating interorganelle connectivity during stress still remain opaque. In this report, we use the model plant Arabidopsis thaliana to show that ionic stress increases endoplasmic reticulum (ER)–plasma membrane (PM) connectivity by promoting the cortical expansion of synaptotagmin 1 (SYT1)-enriched ER–PM contact sites (S-EPCSs). We define differential roles for the cortical cytoskeleton in the regulation of S-EPCS dynamics and ER–PM connectivity, and we identify the accumulation of phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2] at the PM as a molecular signal associated with the ER–PM connectivity changes. Our study highlights the functional conservation of EPCS components and PM phosphoinositides as modulators of ER–PM connectivity in eukaryotes, and uncovers unique aspects of the spatiotemporal regulation of ER–PM connectivity in plants."}],"pmid":1,"_id":"5908","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publisher":"National Academy of Sciences","main_file_link":[{"url":"https://doi.org/10.1073/pnas.1818099116","open_access":"1"}],"volume":116,"page":"1420-1429","date_created":"2019-02-03T22:59:14Z","month":"01","language":[{"iso":"eng"}],"author":[{"last_name":"Lee","first_name":"Eunkyoung","full_name":"Lee, Eunkyoung"},{"last_name":"Vanneste","full_name":"Vanneste, Steffen","first_name":"Steffen"},{"last_name":"Pérez-Sancho","full_name":"Pérez-Sancho, Jessica","first_name":"Jessica"},{"full_name":"Benitez-Fuente, Francisco","first_name":"Francisco","last_name":"Benitez-Fuente"},{"full_name":"Strelau, Matthew","first_name":"Matthew","last_name":"Strelau"},{"full_name":"Macho, Alberto P.","first_name":"Alberto P.","last_name":"Macho"},{"first_name":"Miguel A.","full_name":"Botella, Miguel A.","last_name":"Botella"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","last_name":"Friml","full_name":"Friml, Jiří","first_name":"Jiří"},{"full_name":"Rosado, Abel","first_name":"Abel","last_name":"Rosado"}],"type":"journal_article","article_processing_charge":"No","publication":"Proceedings of the National Academy of Sciences of the United States of America","scopus_import":"1"},{"date_created":"2019-02-03T22:59:15Z","page":"239-248","file_date_updated":"2020-07-14T12:47:13Z","volume":34,"ddc":["570"],"scopus_import":"1","publication":"Trends in Ecology and Evolution","article_processing_charge":"No","type":"journal_article","language":[{"iso":"eng"}],"author":[{"last_name":"Faria","first_name":"Rui","full_name":"Faria, Rui"},{"first_name":"Kerstin","full_name":"Johannesson, Kerstin","last_name":"Johannesson"},{"last_name":"Butlin","full_name":"Butlin, Roger K.","first_name":"Roger K."},{"orcid":"0000-0003-1050-4969","id":"3C147470-F248-11E8-B48F-1D18A9856A87","last_name":"Westram","full_name":"Westram, Anja M","first_name":"Anja M"}],"month":"03","_id":"5911","abstract":[{"lang":"eng","text":"Empirical data suggest that inversions in many species contain genes important for intraspecific divergence and speciation, yet mechanisms of evolution remain unclear. While genes inside an inversion are tightly linked, inversions are not static but evolve separately from the rest of the genome by new mutations, recombination within arrangements, and gene flux between arrangements. Inversion polymorphisms are maintained by different processes, for example, divergent or balancing selection, or a mix of multiple processes. Moreover, the relative roles of selection, drift, mutation, and recombination will change over the lifetime of an inversion and within its area of distribution. We believe inversions are central to the evolution of many species, but we need many more data and new models to understand the complex mechanisms involved."}],"ec_funded":1,"project":[{"grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships"}],"publisher":"Elsevier","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","year":"2019","doi":"10.1016/j.tree.2018.12.005","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png"},"day":"01","isi":1,"publication_identifier":{"issn":["01695347"]},"title":"Evolving inversions","issue":"3","has_accepted_license":"1","intvolume":"        34","status":"public","date_updated":"2023-08-24T14:29:48Z","external_id":{"isi":["000459899000013"]},"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","oa":1,"quality_controlled":"1","publication_status":"published","citation":{"ama":"Faria R, Johannesson K, Butlin RK, Westram AM. Evolving inversions. <i>Trends in Ecology and Evolution</i>. 2019;34(3):239-248. doi:<a href=\"https://doi.org/10.1016/j.tree.2018.12.005\">10.1016/j.tree.2018.12.005</a>","apa":"Faria, R., Johannesson, K., Butlin, R. K., &#38; Westram, A. M. (2019). Evolving inversions. <i>Trends in Ecology and Evolution</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.tree.2018.12.005\">https://doi.org/10.1016/j.tree.2018.12.005</a>","chicago":"Faria, Rui, Kerstin Johannesson, Roger K. Butlin, and Anja M Westram. “Evolving Inversions.” <i>Trends in Ecology and Evolution</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.tree.2018.12.005\">https://doi.org/10.1016/j.tree.2018.12.005</a>.","mla":"Faria, Rui, et al. “Evolving Inversions.” <i>Trends in Ecology and Evolution</i>, vol. 34, no. 3, Elsevier, 2019, pp. 239–48, doi:<a href=\"https://doi.org/10.1016/j.tree.2018.12.005\">10.1016/j.tree.2018.12.005</a>.","short":"R. Faria, K. Johannesson, R.K. Butlin, A.M. Westram, Trends in Ecology and Evolution 34 (2019) 239–248.","ieee":"R. Faria, K. Johannesson, R. K. Butlin, and A. M. Westram, “Evolving inversions,” <i>Trends in Ecology and Evolution</i>, vol. 34, no. 3. Elsevier, pp. 239–248, 2019.","ista":"Faria R, Johannesson K, Butlin RK, Westram AM. 2019. Evolving inversions. Trends in Ecology and Evolution. 34(3), 239–248."},"article_type":"original","date_published":"2019-03-01T00:00:00Z","file":[{"file_name":"2019_Trends_Evolution_Faria.pdf","checksum":"ef24572d6ebcc1452c067e05410cc4a2","file_size":1946795,"relation":"main_file","access_level":"open_access","date_updated":"2020-07-14T12:47:13Z","creator":"cziletti","content_type":"application/pdf","file_id":"7245","date_created":"2020-01-09T10:55:58Z"}],"oa_version":"Published Version","department":[{"_id":"NiBa"}]},{"volume":863,"date_created":"2019-02-10T22:59:15Z","page":"386-406","language":[{"iso":"eng"}],"month":"03","author":[{"orcid":"0000-0003-1740-7635","id":"2C9AF1C2-F248-11E8-B48F-1D18A9856A87","last_name":"Klotz","full_name":"Klotz, Lukasz","first_name":"Lukasz"},{"last_name":"Gumowski","first_name":"Konrad","full_name":"Gumowski, Konrad"},{"last_name":"Wesfreid","first_name":"José Eduardo","full_name":"Wesfreid, José Eduardo"}],"type":"journal_article","scopus_import":"1","article_processing_charge":"No","publication":"Journal of Fluid Mechanics","abstract":[{"text":"The hairpin instability of a jet in a crossflow (JICF) for a low jet-to-crossflow velocity ratio is investigated experimentally for a velocity ratio range of R ∈ (0.14, 0.75) and crossflow Reynolds numbers ReD ∈ (260, 640). From spectral analysis we characterize the Strouhal number and amplitude of the hairpin instability as a function of R and ReD. We demonstrate that the dynamics of the hairpins is well described by the Landau model, and, hence, that the instability occurs through Hopf bifurcation, similarly to other hydrodynamical oscillators such as wake behind different bluff bodies. Using the Landau model, we determine the precise threshold values of hairpin shedding. We also study the spatial dependence of this hydrodynamical instability, which shows a global behaviour.","lang":"eng"}],"_id":"5943","publisher":"Cambridge University Press","project":[{"grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships"}],"main_file_link":[{"url":"https://arxiv.org/abs/1902.07931","open_access":"1"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","ec_funded":1,"isi":1,"day":"25","doi":"10.1017/jfm.2018.974","title":"Experiments on a jet in a crossflow in the low-velocity-ratio regime","year":"2019","external_id":{"arxiv":["1902.07931"],"isi":["000526029100016"]},"oa":1,"status":"public","intvolume":"       863","date_updated":"2023-08-24T14:43:13Z","publication_status":"published","citation":{"short":"L. Klotz, K. Gumowski, J.E. Wesfreid, Journal of Fluid Mechanics 863 (2019) 386–406.","mla":"Klotz, Lukasz, et al. “Experiments on a Jet in a Crossflow in the Low-Velocity-Ratio Regime.” <i>Journal of Fluid Mechanics</i>, vol. 863, Cambridge University Press, 2019, pp. 386–406, doi:<a href=\"https://doi.org/10.1017/jfm.2018.974\">10.1017/jfm.2018.974</a>.","ieee":"L. Klotz, K. Gumowski, and J. E. Wesfreid, “Experiments on a jet in a crossflow in the low-velocity-ratio regime,” <i>Journal of Fluid Mechanics</i>, vol. 863. Cambridge University Press, pp. 386–406, 2019.","ista":"Klotz L, Gumowski K, Wesfreid JE. 2019. Experiments on a jet in a crossflow in the low-velocity-ratio regime. Journal of Fluid Mechanics. 863, 386–406.","ama":"Klotz L, Gumowski K, Wesfreid JE. Experiments on a jet in a crossflow in the low-velocity-ratio regime. <i>Journal of Fluid Mechanics</i>. 2019;863:386-406. doi:<a href=\"https://doi.org/10.1017/jfm.2018.974\">10.1017/jfm.2018.974</a>","apa":"Klotz, L., Gumowski, K., &#38; Wesfreid, J. E. (2019). Experiments on a jet in a crossflow in the low-velocity-ratio regime. <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/jfm.2018.974\">https://doi.org/10.1017/jfm.2018.974</a>","chicago":"Klotz, Lukasz, Konrad Gumowski, and José Eduardo Wesfreid. “Experiments on a Jet in a Crossflow in the Low-Velocity-Ratio Regime.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2019. <a href=\"https://doi.org/10.1017/jfm.2018.974\">https://doi.org/10.1017/jfm.2018.974</a>."},"arxiv":1,"quality_controlled":"1","oa_version":"Preprint","department":[{"_id":"BjHo"}],"date_published":"2019-03-25T00:00:00Z","article_type":"original"},{"abstract":[{"lang":"eng","text":"Understanding the thermodynamics of the duplication process is a fundamental step towards a comprehensive physical theory of biological systems. However, the immense complexity of real cells obscures the fundamental tensions between energy gradients and entropic contributions that underlie duplication. The study of synthetic, feasible systems reproducing part of the key ingredients of living entities but overcoming major sources of biological complexity is of great relevance to deepen the comprehension of the fundamental thermodynamic processes underlying life and its prevalence. In this paper an abstract—yet realistic—synthetic system made of small synthetic protocell aggregates is studied in detail. A fundamental relation between free energy and entropic gradients is derived for a general, non-equilibrium scenario, setting the thermodynamic conditions for the occurrence and prevalence of duplication phenomena. This relation sets explicitly how the energy gradients invested in creating and maintaining structural—and eventually, functional—elements of the system must always compensate the entropic gradients, whose contributions come from changes in the translational, configurational, and macrostate entropies, as well as from dissipation due to irreversible transitions. Work/energy relations are also derived, defining lower bounds on the energy required for the duplication event to take place. A specific example including real ternary emulsions is provided in order to grasp the orders of magnitude involved in the problem. It is found that the minimal work invested over the system to trigger a duplication event is around ~ 10−13J , which results, in the case of duplication of all the vesicles contained in a liter of emulsion, in an amount of energy around ~ 1kJ . Without aiming to describe a truly biological process of duplication, this theoretical contribution seeks to explicitly define and identify the key actors that participate in it."}],"_id":"5944","publisher":"MDPI","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file_date_updated":"2020-07-14T12:47:13Z","ddc":["570"],"volume":9,"date_created":"2019-02-10T22:59:15Z","type":"journal_article","author":[{"id":"43BE2298-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9806-5643","last_name":"Corominas-Murtra","first_name":"Bernat","full_name":"Corominas-Murtra, Bernat"}],"month":"01","language":[{"iso":"eng"}],"scopus_import":"1","publication":"Life","article_processing_charge":"No","citation":{"ama":"Corominas-Murtra B. Thermodynamics of duplication thresholds in synthetic protocell systems. <i>Life</i>. 2019;9(1). doi:<a href=\"https://doi.org/10.3390/life9010009\">10.3390/life9010009</a>","apa":"Corominas-Murtra, B. (2019). Thermodynamics of duplication thresholds in synthetic protocell systems. <i>Life</i>. MDPI. <a href=\"https://doi.org/10.3390/life9010009\">https://doi.org/10.3390/life9010009</a>","chicago":"Corominas-Murtra, Bernat. “Thermodynamics of Duplication Thresholds in Synthetic Protocell Systems.” <i>Life</i>. MDPI, 2019. <a href=\"https://doi.org/10.3390/life9010009\">https://doi.org/10.3390/life9010009</a>.","short":"B. Corominas-Murtra, Life 9 (2019).","mla":"Corominas-Murtra, Bernat. “Thermodynamics of Duplication Thresholds in Synthetic Protocell Systems.” <i>Life</i>, vol. 9, no. 1, 9, MDPI, 2019, doi:<a href=\"https://doi.org/10.3390/life9010009\">10.3390/life9010009</a>.","ieee":"B. Corominas-Murtra, “Thermodynamics of duplication thresholds in synthetic protocell systems,” <i>Life</i>, vol. 9, no. 1. MDPI, 2019.","ista":"Corominas-Murtra B. 2019. Thermodynamics of duplication thresholds in synthetic protocell systems. Life. 9(1), 9."},"publication_status":"published","quality_controlled":"1","file":[{"content_type":"application/pdf","file_id":"5951","date_created":"2019-02-11T10:45:27Z","creator":"dernst","date_updated":"2020-07-14T12:47:13Z","file_name":"2019_Life_Corominas.pdf","file_size":963454,"checksum":"7d2322cd96ace41959909b66702d5cf4","relation":"main_file","access_level":"open_access"}],"oa_version":"Published Version","department":[{"_id":"EdHa"}],"date_published":"2019-01-15T00:00:00Z","article_number":"9","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"doi":"10.3390/life9010009","day":"15","isi":1,"has_accepted_license":"1","issue":"1","publication_identifier":{"eissn":["20751729"]},"title":"Thermodynamics of duplication thresholds in synthetic protocell systems","year":"2019","external_id":{"isi":["000464125500001"]},"oa":1,"intvolume":"         9","status":"public","date_updated":"2023-08-24T14:43:41Z"},{"volume":176,"related_material":{"link":[{"url":"https://ist.ac.at/en/news/cells-find-their-identity-using-a-mathematically-optimal-strategy/","description":"News on IST Homepage","relation":"press_release"}]},"date_created":"2019-02-10T22:59:16Z","page":"844-855.e15","language":[{"iso":"eng"}],"author":[{"last_name":"Petkova","full_name":"Petkova, Mariela D.","first_name":"Mariela D."},{"last_name":"Tkacik","full_name":"Tkacik, Gasper","first_name":"Gasper","orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Bialek","full_name":"Bialek, William","first_name":"William"},{"last_name":"Wieschaus","first_name":"Eric F.","full_name":"Wieschaus, Eric F."},{"last_name":"Gregor","first_name":"Thomas","full_name":"Gregor, Thomas"}],"month":"02","type":"journal_article","scopus_import":"1","article_processing_charge":"No","publication":"Cell","abstract":[{"text":"In developing organisms, spatially prescribed cell identities are thought to be determined by the expression levels of multiple genes. Quantitative tests of this idea, however, require a theoretical framework capable of exposing the rules and precision of cell specification over developmental time. We use the gap gene network in the early fly embryo as an example to show how expression levels of the four gap genes can be jointly decoded into an optimal specification of position with 1% accuracy. The decoder correctly predicts, with no free parameters, the dynamics of pair-rule expression patterns at different developmental time points and in various mutant backgrounds. Precise cellular identities are thus available at the earliest stages of development, contrasting the prevailing view of positional information being slowly refined across successive layers of the patterning network. Our results suggest that developmental enhancers closely approximate a mathematically optimal decoding strategy.","lang":"eng"}],"_id":"5945","pmid":1,"publisher":"Cell Press","main_file_link":[{"url":"https://doi.org/10.1016/j.cell.2019.01.007","open_access":"1"}],"project":[{"grant_number":"P28844-B27","call_identifier":"FWF","_id":"254E9036-B435-11E9-9278-68D0E5697425","name":"Biophysics of information processing in gene regulation"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","isi":1,"day":"07","doi":"10.1016/j.cell.2019.01.007","title":"Optimal decoding of cellular identities in a genetic network","issue":"4","year":"2019","external_id":{"pmid":["30712870"],"isi":["000457969200015"]},"oa":1,"status":"public","intvolume":"       176","date_updated":"2023-08-24T14:42:47Z","citation":{"ista":"Petkova MD, Tkačik G, Bialek W, Wieschaus EF, Gregor T. 2019. Optimal decoding of cellular identities in a genetic network. Cell. 176(4), 844–855.e15.","ieee":"M. D. Petkova, G. Tkačik, W. Bialek, E. F. Wieschaus, and T. Gregor, “Optimal decoding of cellular identities in a genetic network,” <i>Cell</i>, vol. 176, no. 4. Cell Press, p. 844–855.e15, 2019.","short":"M.D. Petkova, G. Tkačik, W. Bialek, E.F. Wieschaus, T. Gregor, Cell 176 (2019) 844–855.e15.","mla":"Petkova, Mariela D., et al. “Optimal Decoding of Cellular Identities in a Genetic Network.” <i>Cell</i>, vol. 176, no. 4, Cell Press, 2019, p. 844–855.e15, doi:<a href=\"https://doi.org/10.1016/j.cell.2019.01.007\">10.1016/j.cell.2019.01.007</a>.","chicago":"Petkova, Mariela D., Gašper Tkačik, William Bialek, Eric F. Wieschaus, and Thomas Gregor. “Optimal Decoding of Cellular Identities in a Genetic Network.” <i>Cell</i>. Cell Press, 2019. <a href=\"https://doi.org/10.1016/j.cell.2019.01.007\">https://doi.org/10.1016/j.cell.2019.01.007</a>.","ama":"Petkova MD, Tkačik G, Bialek W, Wieschaus EF, Gregor T. Optimal decoding of cellular identities in a genetic network. <i>Cell</i>. 2019;176(4):844-855.e15. doi:<a href=\"https://doi.org/10.1016/j.cell.2019.01.007\">10.1016/j.cell.2019.01.007</a>","apa":"Petkova, M. D., Tkačik, G., Bialek, W., Wieschaus, E. F., &#38; Gregor, T. (2019). Optimal decoding of cellular identities in a genetic network. <i>Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cell.2019.01.007\">https://doi.org/10.1016/j.cell.2019.01.007</a>"},"publication_status":"published","quality_controlled":"1","oa_version":"Published Version","department":[{"_id":"GaTk"}],"date_published":"2019-02-07T00:00:00Z","article_type":"original"},{"abstract":[{"text":"Graph algorithms applied in many applications, including social networks, communication networks, VLSI design, graphics, and several others, require dynamic modifications - addition and removal of vertices and/or edges - in the graph. This paper presents a novel concurrent non-blocking algorithm to implement a dynamic unbounded directed graph in a shared-memory machine. The addition and removal operations of vertices and edges are lock-free. For a finite sized graph, the lookup operations are wait-free. Most significant component of the presented algorithm is the reachability query in a concurrent graph. The reachability queries in our algorithm are obstruction-free and thus impose minimal additional synchronization cost over other operations. We prove that each of the data structure operations are linearizable. We extensively evaluate a sample C/C++ implementation of the algorithm through a number of micro-benchmarks. The experimental results show that the proposed algorithm scales well with the number of threads and on an average provides 5 to 7x performance improvement over a concurrent graph implementation using coarse-grained locking.","lang":"eng"}],"_id":"5947","publisher":"ACM","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1809.00896"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_created":"2019-02-10T22:59:17Z","page":"168-177","month":"01","language":[{"iso":"eng"}],"author":[{"id":"3C41A08A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2742-4028","last_name":"Chatterjee","first_name":"Bapi","full_name":"Chatterjee, Bapi"},{"full_name":"Peri, Sathya","first_name":"Sathya","last_name":"Peri"},{"first_name":"Muktikanta","full_name":"Sa, Muktikanta","last_name":"Sa"},{"last_name":"Singhal","full_name":"Singhal, Nandini","first_name":"Nandini"}],"conference":{"start_date":"2019-01-04","end_date":"2019-01-07","name":"ICDCN: Conference on Distributed Computing and Networking","location":"Bangalore, India"},"type":"conference","scopus_import":"1","article_processing_charge":"No","publication":"ACM International Conference Proceeding Series","citation":{"ista":"Chatterjee B, Peri S, Sa M, Singhal N. 2019. A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries. ACM International Conference Proceeding Series. ICDCN: Conference on Distributed Computing and Networking, 168–177.","mla":"Chatterjee, Bapi, et al. “A Simple and Practical Concurrent Non-Blocking Unbounded Graph with Linearizable Reachability Queries.” <i>ACM International Conference Proceeding Series</i>, ACM, 2019, pp. 168–77, doi:<a href=\"https://doi.org/10.1145/3288599.3288617\">10.1145/3288599.3288617</a>.","short":"B. Chatterjee, S. Peri, M. Sa, N. Singhal, in:, ACM International Conference Proceeding Series, ACM, 2019, pp. 168–177.","ieee":"B. Chatterjee, S. Peri, M. Sa, and N. Singhal, “A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries,” in <i>ACM International Conference Proceeding Series</i>, Bangalore, India, 2019, pp. 168–177.","chicago":"Chatterjee, Bapi, Sathya Peri, Muktikanta Sa, and Nandini Singhal. “A Simple and Practical Concurrent Non-Blocking Unbounded Graph with Linearizable Reachability Queries.” In <i>ACM International Conference Proceeding Series</i>, 168–77. ACM, 2019. <a href=\"https://doi.org/10.1145/3288599.3288617\">https://doi.org/10.1145/3288599.3288617</a>.","ama":"Chatterjee B, Peri S, Sa M, Singhal N. A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries. In: <i>ACM International Conference Proceeding Series</i>. ACM; 2019:168-177. doi:<a href=\"https://doi.org/10.1145/3288599.3288617\">10.1145/3288599.3288617</a>","apa":"Chatterjee, B., Peri, S., Sa, M., &#38; Singhal, N. (2019). A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries. In <i>ACM International Conference Proceeding Series</i> (pp. 168–177). Bangalore, India: ACM. <a href=\"https://doi.org/10.1145/3288599.3288617\">https://doi.org/10.1145/3288599.3288617</a>"},"publication_status":"published","arxiv":1,"quality_controlled":"1","oa_version":"Preprint","department":[{"_id":"DaAl"}],"date_published":"2019-01-04T00:00:00Z","isi":1,"doi":"10.1145/3288599.3288617","day":"04","title":"A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries","publication_identifier":{"isbn":["978-1-4503-6094-4 "]},"year":"2019","external_id":{"arxiv":["1809.00896"],"isi":["000484491600019"]},"oa":1,"status":"public","date_updated":"2023-08-24T14:41:53Z"},{"project":[{"_id":"25892FC0-B435-11E9-9278-68D0E5697425","name":"Efficient Algorithms for Computer Aided Verification","grant_number":"ICT15-003"},{"grant_number":"S 11407_N23","call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425","name":"Rigorous Systems Engineering"}],"main_file_link":[{"url":"https://arxiv.org/abs/1701.02944"}],"publisher":"Springer Nature","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","alternative_title":["LNCS"],"_id":"5948","abstract":[{"text":"We study the termination problem for nondeterministic probabilistic programs. We consider the bounded termination problem that asks whether the supremum of the expected termination time over all schedulers is bounded. First, we show that ranking supermartingales (RSMs) are both sound and complete for proving bounded termination over nondeterministic probabilistic programs. For nondeterministic probabilistic programs a previous result claimed that RSMs are not complete for bounded termination, whereas our result corrects the previous flaw and establishes completeness with a rigorous proof. Second, we present the first sound approach to establish lower bounds on expected termination time through RSMs.","lang":"eng"}],"scopus_import":"1","publication":"International Conference on Verification, Model Checking, and Abstract Interpretation","article_processing_charge":"No","type":"conference","month":"01","conference":{"end_date":"2019-01-15","start_date":"2019-01-13","name":"VMCAI: Verification, Model Checking, and Abstract Interpretation","location":"Cascais, Portugal"},"language":[{"iso":"eng"}],"author":[{"first_name":"Hongfei","full_name":"Fu, Hongfei","last_name":"Fu"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu","last_name":"Chatterjee"}],"date_created":"2019-02-10T22:59:17Z","page":"468-490","volume":11388,"date_published":"2019-01-11T00:00:00Z","oa_version":"Preprint","department":[{"_id":"KrCh"}],"quality_controlled":"1","arxiv":1,"publication_status":"published","citation":{"ista":"Fu H, Chatterjee K. 2019. Termination of nondeterministic probabilistic programs. International Conference on Verification, Model Checking, and Abstract Interpretation. VMCAI: Verification, Model Checking, and Abstract Interpretation, LNCS, vol. 11388, 468–490.","ieee":"H. Fu and K. Chatterjee, “Termination of nondeterministic probabilistic programs,” in <i>International Conference on Verification, Model Checking, and Abstract Interpretation</i>, Cascais, Portugal, 2019, vol. 11388, pp. 468–490.","short":"H. Fu, K. Chatterjee, in:, International Conference on Verification, Model Checking, and Abstract Interpretation, Springer Nature, 2019, pp. 468–490.","mla":"Fu, Hongfei, and Krishnendu Chatterjee. “Termination of Nondeterministic Probabilistic Programs.” <i>International Conference on Verification, Model Checking, and Abstract Interpretation</i>, vol. 11388, Springer Nature, 2019, pp. 468–90, doi:<a href=\"https://doi.org/10.1007/978-3-030-11245-5_22\">10.1007/978-3-030-11245-5_22</a>.","chicago":"Fu, Hongfei, and Krishnendu Chatterjee. “Termination of Nondeterministic Probabilistic Programs.” In <i>International Conference on Verification, Model Checking, and Abstract Interpretation</i>, 11388:468–90. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/978-3-030-11245-5_22\">https://doi.org/10.1007/978-3-030-11245-5_22</a>.","ama":"Fu H, Chatterjee K. Termination of nondeterministic probabilistic programs. In: <i>International Conference on Verification, Model Checking, and Abstract Interpretation</i>. Vol 11388. Springer Nature; 2019:468-490. doi:<a href=\"https://doi.org/10.1007/978-3-030-11245-5_22\">10.1007/978-3-030-11245-5_22</a>","apa":"Fu, H., &#38; Chatterjee, K. (2019). Termination of nondeterministic probabilistic programs. In <i>International Conference on Verification, Model Checking, and Abstract Interpretation</i> (Vol. 11388, pp. 468–490). Cascais, Portugal: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-030-11245-5_22\">https://doi.org/10.1007/978-3-030-11245-5_22</a>"},"intvolume":"     11388","status":"public","date_updated":"2025-06-02T08:53:41Z","external_id":{"arxiv":["1701.02944"],"isi":["000931943000022"]},"year":"2019","day":"11","doi":"10.1007/978-3-030-11245-5_22","isi":1,"title":"Termination of nondeterministic probabilistic programs"}]