[{"intvolume":"         8","abstract":[{"text":"Several Ising-type magnetic van der Waals (vdW) materials exhibit stable magnetic ground states. Despite these clear experimental demonstrations, a complete theoretical and microscopic understanding of their magnetic anisotropy is still lacking. In particular, the validity limit of identifying their one-dimensional (1-D) Ising nature has remained uninvestigated in a quantitative way. Here we performed the complete mapping of magnetic anisotropy for a prototypical Ising vdW magnet FePS3 for the first time. Combining torque magnetometry measurements with their magnetostatic model analysis and the relativistic density functional total energy calculations, we successfully constructed the three-dimensional (3-D) mappings of the magnetic anisotropy in terms of magnetic torque and energy. The results not only quantitatively confirm that the easy axis is perpendicular to the ab plane, but also reveal the anisotropies within the ab, ac, and bc planes. Our approach can be applied to the detailed quantitative study of magnetism in vdW materials.","lang":"eng"}],"publication_status":"published","publication_identifier":{"issn":["2053-1583"]},"day":"06","author":[{"full_name":"Nauman, Muhammad","id":"32c21954-2022-11eb-9d5f-af9f93c24e71","last_name":"Nauman","first_name":"Muhammad","orcid":"0000-0002-2111-4846"},{"first_name":"Do Hoon","last_name":"Kiem","full_name":"Kiem, Do Hoon"},{"first_name":"Sungmin","full_name":"Lee, Sungmin","last_name":"Lee"},{"last_name":"Son","full_name":"Son, Suhan","first_name":"Suhan"},{"last_name":"Park","full_name":"Park, J-G","first_name":"J-G"},{"first_name":"Woun","last_name":"Kang","full_name":"Kang, Woun"},{"full_name":"Han, Myung Joon","last_name":"Han","first_name":"Myung Joon"},{"last_name":"Jo","full_name":"Jo, Youn Jung","first_name":"Youn Jung"}],"oa_version":"Preprint","title":"Complete mapping of magnetic anisotropy for prototype Ising van der Waals FePS3","volume":8,"date_created":"2021-03-23T07:10:17Z","article_type":"original","oa":1,"language":[{"iso":"eng"}],"citation":{"ama":"Nauman M, Kiem DH, Lee S, et al. Complete mapping of magnetic anisotropy for prototype Ising van der Waals FePS3. <i>2D Materials</i>. 2021;8(3). doi:<a href=\"https://doi.org/10.1088/2053-1583/abeed3\">10.1088/2053-1583/abeed3</a>","ieee":"M. Nauman <i>et al.</i>, “Complete mapping of magnetic anisotropy for prototype Ising van der Waals FePS3,” <i>2D Materials</i>, vol. 8, no. 3. IOP Publishing, 2021.","short":"M. Nauman, D.H. Kiem, S. Lee, S. Son, J.-G. Park, W. Kang, M.J. Han, Y.J. Jo, 2D Materials 8 (2021).","ista":"Nauman M, Kiem DH, Lee S, Son S, Park J-G, Kang W, Han MJ, Jo YJ. 2021. Complete mapping of magnetic anisotropy for prototype Ising van der Waals FePS3. 2D Materials. 8(3), 035011.","chicago":"Nauman, Muhammad, Do Hoon Kiem, Sungmin Lee, Suhan Son, J-G Park, Woun Kang, Myung Joon Han, and Youn Jung Jo. “Complete Mapping of Magnetic Anisotropy for Prototype Ising van Der Waals FePS3.” <i>2D Materials</i>. IOP Publishing, 2021. <a href=\"https://doi.org/10.1088/2053-1583/abeed3\">https://doi.org/10.1088/2053-1583/abeed3</a>.","apa":"Nauman, M., Kiem, D. H., Lee, S., Son, S., Park, J.-G., Kang, W., … Jo, Y. J. (2021). Complete mapping of magnetic anisotropy for prototype Ising van der Waals FePS3. <i>2D Materials</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/2053-1583/abeed3\">https://doi.org/10.1088/2053-1583/abeed3</a>","mla":"Nauman, Muhammad, et al. “Complete Mapping of Magnetic Anisotropy for Prototype Ising van Der Waals FePS3.” <i>2D Materials</i>, vol. 8, no. 3, 035011, IOP Publishing, 2021, doi:<a href=\"https://doi.org/10.1088/2053-1583/abeed3\">10.1088/2053-1583/abeed3</a>."},"issue":"3","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","arxiv":1,"month":"04","department":[{"_id":"KiMo"}],"article_number":"035011","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2103.09029"}],"quality_controlled":"1","article_processing_charge":"No","doi":"10.1088/2053-1583/abeed3","publisher":"IOP Publishing","_id":"9282","date_updated":"2021-12-01T10:36:56Z","type":"journal_article","extern":"1","status":"public","publication":"2D Materials","date_published":"2021-04-06T00:00:00Z","year":"2021","external_id":{"arxiv":["2103.09029"]},"keyword":["Mechanical Engineering","General Materials Science","Mechanics of Materials","General Chemistry","Condensed Matter Physics"]},{"publication_status":"published","publication_identifier":{"issn":["2050-084X"]},"file_date_updated":"2021-03-23T10:12:58Z","intvolume":"        10","license":"https://creativecommons.org/licenses/by/4.0/","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"Gene expression levels are influenced by multiple coexisting molecular mechanisms. Some of these interactions such as those of transcription factors and promoters have been studied extensively. However, predicting phenotypes of gene regulatory networks (GRNs) remains a major challenge. Here, we use a well-defined synthetic GRN to study in Escherichia coli how network phenotypes depend on local genetic context, i.e. the genetic neighborhood of a transcription factor and its relative position. We show that one GRN with fixed topology can display not only quantitatively but also qualitatively different phenotypes, depending solely on the local genetic context of its components. Transcriptional read-through is the main molecular mechanism that places one transcriptional unit (TU) within two separate regulons without the need for complex regulatory sequences. We propose that relative order of individual TUs, with its potential for combinatorial complexity, plays an important role in shaping phenotypes of GRNs."}],"has_accepted_license":"1","article_type":"original","date_created":"2021-03-23T10:11:46Z","volume":10,"oa_version":"Published Version","title":"Local genetic context shapes the function of a gene regulatory network","author":[{"id":"3ABC5BA6-F248-11E8-B48F-1D18A9856A87","full_name":"Nagy-Staron, Anna A","last_name":"Nagy-Staron","first_name":"Anna A","orcid":"0000-0002-1391-8377"},{"id":"3AEC8556-F248-11E8-B48F-1D18A9856A87","full_name":"Tomasek, Kathrin","last_name":"Tomasek","orcid":"0000-0003-3768-877X","first_name":"Kathrin"},{"full_name":"Caruso Carter, Caroline","last_name":"Caruso Carter","first_name":"Caroline"},{"last_name":"Sonnleitner","full_name":"Sonnleitner, Elisabeth","first_name":"Elisabeth"},{"last_name":"Kavcic","full_name":"Kavcic, Bor","id":"350F91D2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6041-254X","first_name":"Bor"},{"first_name":"Tiago","full_name":"Paixão, Tiago","last_name":"Paixão"},{"first_name":"Calin C","orcid":"0000-0001-6220-2052","last_name":"Guet","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","full_name":"Guet, Calin C"}],"day":"08","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"ama":"Nagy-Staron AA, Tomasek K, Caruso Carter C, et al. Local genetic context shapes the function of a gene regulatory network. <i>eLife</i>. 2021;10. doi:<a href=\"https://doi.org/10.7554/elife.65993\">10.7554/elife.65993</a>","short":"A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).","ieee":"A. A. Nagy-Staron <i>et al.</i>, “Local genetic context shapes the function of a gene regulatory network,” <i>eLife</i>, vol. 10. eLife Sciences Publications, 2021.","ista":"Nagy-Staron AA, Tomasek K, Caruso Carter C, Sonnleitner E, Kavcic B, Paixão T, Guet CC. 2021. Local genetic context shapes the function of a gene regulatory network. eLife. 10, e65993.","chicago":"Nagy-Staron, Anna A, Kathrin Tomasek, Caroline Caruso Carter, Elisabeth Sonnleitner, Bor Kavcic, Tiago Paixão, and Calin C Guet. “Local Genetic Context Shapes the Function of a Gene Regulatory Network.” <i>ELife</i>. eLife Sciences Publications, 2021. <a href=\"https://doi.org/10.7554/elife.65993\">https://doi.org/10.7554/elife.65993</a>.","mla":"Nagy-Staron, Anna A., et al. “Local Genetic Context Shapes the Function of a Gene Regulatory Network.” <i>ELife</i>, vol. 10, e65993, eLife Sciences Publications, 2021, doi:<a href=\"https://doi.org/10.7554/elife.65993\">10.7554/elife.65993</a>.","apa":"Nagy-Staron, A. A., Tomasek, K., Caruso Carter, C., Sonnleitner, E., Kavcic, B., Paixão, T., &#38; Guet, C. C. (2021). Local genetic context shapes the function of a gene regulatory network. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/elife.65993\">https://doi.org/10.7554/elife.65993</a>"},"language":[{"iso":"eng"}],"oa":1,"article_number":"e65993","file":[{"success":1,"file_name":"elife-65993-v2.pdf","access_level":"open_access","content_type":"application/pdf","relation":"main_file","checksum":"3c2f44058c2dd45a5a1027f09d263f8e","file_size":1390469,"date_created":"2021-03-23T10:12:58Z","date_updated":"2021-03-23T10:12:58Z","creator":"bkavcic","file_id":"9284"}],"department":[{"_id":"GaTk"},{"_id":"CaGu"}],"month":"03","quality_controlled":"1","ddc":["570"],"type":"journal_article","date_updated":"2024-02-21T12:41:57Z","_id":"9283","publisher":"eLife Sciences Publications","doi":"10.7554/elife.65993","article_processing_charge":"Yes","acknowledgement":"We thank J Bollback, L Hurst, M Lagator, C Nizak, O Rivoire, M Savageau, G Tkacik, and B Vicozo\r\nfor helpful discussions; A Dolinar and A Greshnova for technical assistance; T Bollenbach for supplying the strain JW0336; C Rusnac, and members of the Guet lab for comments. The research leading to these results has received funding from the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013) under REA grant agreement n˚\r\n628377 (ANS) and an Austrian Science Fund (FWF) grant n˚ I 3901-B32 (CCG).","date_published":"2021-03-08T00:00:00Z","ec_funded":1,"project":[{"name":"The Systems Biology of Transcriptional Read-Through in Bacteria: from Synthetic Networks to Genomic Studies","grant_number":"628377","call_identifier":"FP7","_id":"2517526A-B435-11E9-9278-68D0E5697425"},{"name":"CyberCircuits: Cybergenetic circuits to test composability of gene networks","grant_number":"I03901","call_identifier":"FWF","_id":"268BFA92-B435-11E9-9278-68D0E5697425"}],"publication":"eLife","status":"public","keyword":["Genetics and Molecular Biology"],"external_id":{"isi":["000631050900001"]},"related_material":{"record":[{"relation":"research_data","status":"public","id":"8951"}]},"isi":1,"year":"2021"},{"date_published":"2021-06-01T00:00:00Z","acknowledgement":"We thank Ivan Kulik for developing the Chip’n’Dale apparatus with Lanxin Li; the IST machine shop and the Bioimaging facility for their excellent support; Matouš Glanc and Matyáš Fendrych for their valuable discussions and help; Barbara Casillas-Perez for her help with statistics. This project has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (grant agreement No 742985). A.J. is supported by funding from the Austrian Science Fund (FWF): I3630B25 to J.F. ","pmid":1,"ec_funded":1,"project":[{"_id":"261099A6-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"742985","name":"Tracing Evolution of Auxin Transport and Polarity in Plants"},{"_id":"26538374-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"I03630","name":"Molecular mechanisms of endocytic cargo recognition in plants"}],"status":"public","publication":"Plant Physiology","external_id":{"isi":["000671555900031"],"pmid":["33734402"]},"related_material":{"link":[{"url":"10.1093/plphys/kiab380","relation":"erratum"}],"record":[{"relation":"dissertation_contains","status":"public","id":"11626"},{"id":"10083","status":"public","relation":"dissertation_contains"}]},"isi":1,"year":"2021","quality_controlled":"1","ddc":["580"],"page":"1122–1142","type":"journal_article","date_updated":"2024-10-29T10:22:43Z","_id":"9287","publisher":"Oxford University Press","doi":"10.1093/plphys/kiab134","article_processing_charge":"Yes (in subscription journal)","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","issue":"2","citation":{"mla":"Narasimhan, Madhumitha, et al. “Systematic Analysis of Specific and Nonspecific Auxin Effects on Endocytosis and Trafficking.” <i>Plant Physiology</i>, vol. 186, no. 2, Oxford University Press, 2021, pp. 1122–1142, doi:<a href=\"https://doi.org/10.1093/plphys/kiab134\">10.1093/plphys/kiab134</a>.","apa":"Narasimhan, M., Gallei, M. C., Tan, S., Johnson, A. J., Verstraeten, I., Li, L., … Friml, J. (2021). Systematic analysis of specific and nonspecific auxin effects on endocytosis and trafficking. <i>Plant Physiology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/plphys/kiab134\">https://doi.org/10.1093/plphys/kiab134</a>","ista":"Narasimhan M, Gallei MC, Tan S, Johnson AJ, Verstraeten I, Li L, Rodriguez Solovey L, Han H, Himschoot E, Wang R, Vanneste S, Sánchez-Simarro J, Aniento F, Adamowski M, Friml J. 2021. Systematic analysis of specific and nonspecific auxin effects on endocytosis and trafficking. Plant Physiology. 186(2), 1122–1142.","chicago":"Narasimhan, Madhumitha, Michelle C Gallei, Shutang Tan, Alexander J Johnson, Inge Verstraeten, Lanxin Li, Lesia Rodriguez Solovey, et al. “Systematic Analysis of Specific and Nonspecific Auxin Effects on Endocytosis and Trafficking.” <i>Plant Physiology</i>. Oxford University Press, 2021. <a href=\"https://doi.org/10.1093/plphys/kiab134\">https://doi.org/10.1093/plphys/kiab134</a>.","short":"M. Narasimhan, M.C. Gallei, S. Tan, A.J. Johnson, I. Verstraeten, L. Li, L. Rodriguez Solovey, H. Han, E. Himschoot, R. Wang, S. Vanneste, J. Sánchez-Simarro, F. Aniento, M. Adamowski, J. Friml, Plant Physiology 186 (2021) 1122–1142.","ieee":"M. Narasimhan <i>et al.</i>, “Systematic analysis of specific and nonspecific auxin effects on endocytosis and trafficking,” <i>Plant Physiology</i>, vol. 186, no. 2. Oxford University Press, pp. 1122–1142, 2021.","ama":"Narasimhan M, Gallei MC, Tan S, et al. Systematic analysis of specific and nonspecific auxin effects on endocytosis and trafficking. <i>Plant Physiology</i>. 2021;186(2):1122–1142. doi:<a href=\"https://doi.org/10.1093/plphys/kiab134\">10.1093/plphys/kiab134</a>"},"language":[{"iso":"eng"}],"oa":1,"file":[{"checksum":"532bb9469d3b665907f06df8c383eade","relation":"main_file","content_type":"application/pdf","access_level":"open_access","file_name":"2021_PlantPhysio_Narasimhan.pdf","success":1,"file_id":"10273","creator":"cziletti","date_updated":"2021-11-11T15:07:51Z","date_created":"2021-11-11T15:07:51Z","file_size":2289127}],"department":[{"_id":"JiFr"}],"month":"06","publication_status":"published","publication_identifier":{"issn":["0032-0889"],"eissn":["1532-2548"]},"file_date_updated":"2021-11-11T15:07:51Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"text":"The phytohormone auxin and its directional transport through tissues are intensively studied. However, a mechanistic understanding of auxin-mediated feedback on endocytosis and polar distribution of PIN auxin transporters remains limited due to contradictory observations and interpretations. Here, we used state-of-the-art methods to reexamine the\r\nauxin effects on PIN endocytic trafficking. We used high auxin concentrations or longer treatments versus lower concentrations and shorter treatments of natural (IAA) and synthetic (NAA) auxins to distinguish between specific and nonspecific effects. Longer treatments of both auxins interfere with Brefeldin A-mediated intracellular PIN2 accumulation and also with general aggregation of endomembrane compartments. NAA treatment decreased the internalization of the endocytic tracer dye, FM4-64; however, NAA treatment also affected the number, distribution, and compartment identity of the early endosome/trans-Golgi network (EE/TGN), rendering the FM4-64 endocytic assays at high NAA concentrations unreliable. To circumvent these nonspecific effects of NAA and IAA affecting the endomembrane system, we opted for alternative approaches visualizing the endocytic events directly at the plasma membrane (PM). Using Total Internal Reflection Fluorescence (TIRF) microscopy, we saw no significant effects of IAA or NAA treatments on the incidence and dynamics of clathrin foci, implying that these treatments do not affect the overall endocytosis rate. However, both NAA and IAA at low concentrations rapidly and specifically promoted endocytosis of photo-converted PIN2 from the PM. These analyses identify a specific effect of NAA and IAA on PIN2 endocytosis, thus contributing to its\r\npolarity maintenance and furthermore illustrate that high auxin levels have nonspecific effects on trafficking and endomembrane compartments. ","lang":"eng"}],"intvolume":"       186","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"Bio"}],"has_accepted_license":"1","article_type":"original","date_created":"2021-03-26T12:08:38Z","volume":186,"oa_version":"Published Version","title":"Systematic analysis of specific and nonspecific auxin effects on endocytosis and trafficking","author":[{"id":"44BF24D0-F248-11E8-B48F-1D18A9856A87","full_name":"Narasimhan, Madhumitha","last_name":"Narasimhan","first_name":"Madhumitha","orcid":"0000-0002-8600-0671"},{"orcid":"0000-0003-1286-7368","first_name":"Michelle C","last_name":"Gallei","full_name":"Gallei, Michelle C","id":"35A03822-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Tan","full_name":"Tan, Shutang","id":"2DE75584-F248-11E8-B48F-1D18A9856A87","first_name":"Shutang","orcid":"0000-0002-0471-8285"},{"orcid":"0000-0002-2739-8843","first_name":"Alexander J","last_name":"Johnson","full_name":"Johnson, Alexander J","id":"46A62C3A-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Verstraeten","full_name":"Verstraeten, Inge","id":"362BF7FE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7241-2328","first_name":"Inge"},{"first_name":"Lanxin","orcid":"0000-0002-5607-272X","full_name":"Li, Lanxin","id":"367EF8FA-F248-11E8-B48F-1D18A9856A87","last_name":"Li"},{"first_name":"Lesia","orcid":"0000-0002-7244-7237","last_name":"Rodriguez Solovey","full_name":"Rodriguez Solovey, Lesia","id":"3922B506-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Han, Huibin","id":"31435098-F248-11E8-B48F-1D18A9856A87","last_name":"Han","first_name":"Huibin"},{"first_name":"E","last_name":"Himschoot","full_name":"Himschoot, E"},{"last_name":"Wang","full_name":"Wang, R","first_name":"R"},{"full_name":"Vanneste, S","last_name":"Vanneste","first_name":"S"},{"first_name":"J","full_name":"Sánchez-Simarro, J","last_name":"Sánchez-Simarro"},{"first_name":"F","last_name":"Aniento","full_name":"Aniento, F"},{"id":"45F536D2-F248-11E8-B48F-1D18A9856A87","full_name":"Adamowski, Maciek","last_name":"Adamowski","first_name":"Maciek","orcid":"0000-0001-6463-5257"},{"first_name":"Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří","last_name":"Friml"}],"day":"01"},{"abstract":[{"text":"• The phenylpropanoid pathway serves a central role in plant metabolism, providing numerous compounds involved in diverse physiological processes. Most carbon entering the pathway is incorporated into lignin. Although several phenylpropanoid pathway mutants show seedling growth arrest, the role for lignin in seedling growth and development is unexplored.\r\n• We use complementary pharmacological and genetic approaches to block CINNAMATE‐4‐HYDROXYLASE (C4H) functionality in Arabidopsis seedlings and a set of molecular and biochemical techniques to investigate the underlying phenotypes.\r\n• Blocking C4H resulted in reduced lateral rooting and increased adventitious rooting apically in the hypocotyl. These phenotypes coincided with an inhibition in auxin transport. The upstream accumulation in cis‐cinnamic acid was found to likely cause polar auxin transport inhibition. Conversely, a downstream depletion in lignin perturbed phloem‐mediated auxin transport. Restoring lignin deposition effectively reestablished phloem transport and, accordingly, auxin homeostasis.\r\n• Our results show that the accumulation of bioactive intermediates and depletion in lignin jointly cause the aberrant phenotypes upon blocking C4H, and demonstrate that proper deposition of lignin is essential for the establishment of auxin distribution in seedlings. Our data position the phenylpropanoid pathway and lignin in a new physiological framework, consolidating their importance in plant growth and development.","lang":"eng"}],"intvolume":"       230","publication_status":"published","publication_identifier":{"issn":["0028-646x"],"eissn":["1469-8137"]},"author":[{"full_name":"El Houari, I","last_name":"El Houari","first_name":"I"},{"full_name":"Van Beirs, C","last_name":"Van Beirs","first_name":"C"},{"last_name":"Arents","full_name":"Arents, HE","first_name":"HE"},{"first_name":"Huibin","id":"31435098-F248-11E8-B48F-1D18A9856A87","full_name":"Han, Huibin","last_name":"Han"},{"first_name":"A","last_name":"Chanoca","full_name":"Chanoca, A"},{"last_name":"Opdenacker","full_name":"Opdenacker, D","first_name":"D"},{"last_name":"Pollier","full_name":"Pollier, J","first_name":"J"},{"full_name":"Storme, V","last_name":"Storme","first_name":"V"},{"first_name":"W","last_name":"Steenackers","full_name":"Steenackers, W"},{"first_name":"M","last_name":"Quareshy","full_name":"Quareshy, M"},{"first_name":"R","full_name":"Napier, R","last_name":"Napier"},{"first_name":"T","full_name":"Beeckman, T","last_name":"Beeckman"},{"orcid":"0000-0002-8302-7596","first_name":"Jiří","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří"},{"first_name":"B","last_name":"De Rybel","full_name":"De Rybel, B"},{"last_name":"Boerjan","full_name":"Boerjan, W","first_name":"W"},{"full_name":"Vanholme, B","last_name":"Vanholme","first_name":"B"}],"scopus_import":"1","day":"17","title":"Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE are caused by perturbations in auxin transport","oa_version":"Published Version","volume":230,"article_type":"original","date_created":"2021-03-26T12:09:01Z","oa":1,"language":[{"iso":"eng"}],"issue":"6","citation":{"short":"I. El Houari, C. Van Beirs, H. Arents, H. Han, A. Chanoca, D. Opdenacker, J. Pollier, V. Storme, W. Steenackers, M. Quareshy, R. Napier, T. Beeckman, J. Friml, B. De Rybel, W. Boerjan, B. Vanholme, New Phytologist 230 (2021) 2275–2291.","ieee":"I. El Houari <i>et al.</i>, “Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE are caused by perturbations in auxin transport,” <i>New Phytologist</i>, vol. 230, no. 6. Wiley, pp. 2275–2291, 2021.","ama":"El Houari I, Van Beirs C, Arents H, et al. Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE are caused by perturbations in auxin transport. <i>New Phytologist</i>. 2021;230(6):2275-2291. doi:<a href=\"https://doi.org/10.1111/nph.17349\">10.1111/nph.17349</a>","mla":"El Houari, I., et al. “Seedling Developmental Defects upon Blocking CINNAMATE-4-HYDROXYLASE Are Caused by Perturbations in Auxin Transport.” <i>New Phytologist</i>, vol. 230, no. 6, Wiley, 2021, pp. 2275–91, doi:<a href=\"https://doi.org/10.1111/nph.17349\">10.1111/nph.17349</a>.","apa":"El Houari, I., Van Beirs, C., Arents, H., Han, H., Chanoca, A., Opdenacker, D., … Vanholme, B. (2021). Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE are caused by perturbations in auxin transport. <i>New Phytologist</i>. Wiley. <a href=\"https://doi.org/10.1111/nph.17349\">https://doi.org/10.1111/nph.17349</a>","chicago":"El Houari, I, C Van Beirs, HE Arents, Huibin Han, A Chanoca, D Opdenacker, J Pollier, et al. “Seedling Developmental Defects upon Blocking CINNAMATE-4-HYDROXYLASE Are Caused by Perturbations in Auxin Transport.” <i>New Phytologist</i>. Wiley, 2021. <a href=\"https://doi.org/10.1111/nph.17349\">https://doi.org/10.1111/nph.17349</a>.","ista":"El Houari I, Van Beirs C, Arents H, Han H, Chanoca A, Opdenacker D, Pollier J, Storme V, Steenackers W, Quareshy M, Napier R, Beeckman T, Friml J, De Rybel B, Boerjan W, Vanholme B. 2021. Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE are caused by perturbations in auxin transport. New Phytologist. 230(6), 2275–2291."},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","month":"03","department":[{"_id":"JiFr"}],"page":"2275-2291","main_file_link":[{"url":"https://biblio.ugent.be/publication/8703799/file/8703800.pdf","open_access":"1"}],"quality_controlled":"1","doi":"10.1111/nph.17349","article_processing_charge":"No","publisher":"Wiley","date_updated":"2023-09-05T15:46:55Z","_id":"9288","type":"journal_article","status":"public","publication":"New Phytologist","pmid":1,"date_published":"2021-03-17T00:00:00Z","isi":1,"year":"2021","external_id":{"pmid":["33728703"],"isi":["000639552400001"]}},{"oa_version":"Published Version","title":"AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells","author":[{"first_name":"Matous","orcid":"0000-0003-0619-7783","last_name":"Glanc","full_name":"Glanc, Matous","id":"1AE1EA24-02D0-11E9-9BAA-DAF4881429F2"},{"first_name":"K","full_name":"Van Gelderen, K","last_name":"Van Gelderen"},{"orcid":"0000-0001-8295-2926","first_name":"Lukas","last_name":"Hörmayer","id":"2EEE7A2A-F248-11E8-B48F-1D18A9856A87","full_name":"Hörmayer, Lukas"},{"full_name":"Tan, Shutang","id":"2DE75584-F248-11E8-B48F-1D18A9856A87","last_name":"Tan","first_name":"Shutang","orcid":"0000-0002-0471-8285"},{"first_name":"S","last_name":"Naramoto","full_name":"Naramoto, S"},{"first_name":"Xixi","orcid":"0000-0001-7048-4627","last_name":"Zhang","full_name":"Zhang, Xixi","id":"61A66458-47E9-11EA-85BA-8AEAAF14E49A"},{"last_name":"Domjan","id":"C684CD7A-257E-11EA-9B6F-D8588B4F947F","full_name":"Domjan, David","orcid":"0000-0003-2267-106X","first_name":"David"},{"full_name":"Vcelarova, L","last_name":"Vcelarova","first_name":"L"},{"last_name":"Hauschild","full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9843-3522","first_name":"Robert"},{"last_name":"Johnson","full_name":"Johnson, Alexander J","id":"46A62C3A-F248-11E8-B48F-1D18A9856A87","first_name":"Alexander J","orcid":"0000-0002-2739-8843"},{"first_name":"E","full_name":"de Koning, E","last_name":"de Koning"},{"first_name":"M","full_name":"van Dop, M","last_name":"van Dop"},{"full_name":"Rademacher, E","last_name":"Rademacher","first_name":"E"},{"last_name":"Janson","full_name":"Janson, S","first_name":"S"},{"full_name":"Wei, X","last_name":"Wei","first_name":"X"},{"first_name":"Gergely","last_name":"Molnar","full_name":"Molnar, Gergely","id":"34F1AF46-F248-11E8-B48F-1D18A9856A87"},{"id":"43905548-F248-11E8-B48F-1D18A9856A87","full_name":"Fendrych, Matyas","last_name":"Fendrych","first_name":"Matyas","orcid":"0000-0002-9767-8699"},{"first_name":"B","full_name":"De Rybel, B","last_name":"De Rybel"},{"last_name":"Offringa","full_name":"Offringa, R","first_name":"R"},{"first_name":"Jiří","orcid":"0000-0002-8302-7596","last_name":"Friml","full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87"}],"day":"10","article_type":"original","date_created":"2021-03-26T12:09:33Z","volume":31,"intvolume":"        31","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"text":"Polar subcellular localization of the PIN exporters of the phytohormone auxin is a key determinant of directional, intercellular auxin transport and thus a central topic of both plant cell and developmental biology. Arabidopsis mutants lacking PID, a kinase that phosphorylates PINs, or the MAB4/MEL proteins of unknown molecular function display PIN polarity defects and phenocopy pin mutants, but mechanistic insights into how these factors convey PIN polarity are missing. Here, by combining protein biochemistry with quantitative live-cell imaging, we demonstrate that PINs, MAB4/MELs, and AGC kinases interact in the same complex at the plasma membrane. MAB4/MELs are recruited to the plasma membrane by the PINs and in concert with the AGC kinases maintain PIN polarity through limiting lateral diffusion-based escape of PINs from the polar domain. The PIN-MAB4/MEL-PID protein complex has self-reinforcing properties thanks to positive feedback between AGC kinase-mediated PIN phosphorylation and MAB4/MEL recruitment. We thus uncover the molecular mechanism by which AGC kinases and MAB4/MEL proteins regulate PIN localization and plant development.","lang":"eng"}],"acknowledged_ssus":[{"_id":"Bio"}],"has_accepted_license":"1","publication_status":"published","publication_identifier":{"issn":["0960-9822"],"eissn":["1879-0445"]},"file_date_updated":"2021-04-01T10:53:42Z","month":"03","file":[{"checksum":"b1723040ecfd8c81194185472eb62546","relation":"main_file","content_type":"application/pdf","access_level":"open_access","file_name":"2021_CurrentBiology_Glanc.pdf","success":1,"file_id":"9303","date_updated":"2021-04-01T10:53:42Z","creator":"dernst","file_size":4324371,"date_created":"2021-04-01T10:53:42Z"}],"department":[{"_id":"JiFr"}],"language":[{"iso":"eng"}],"oa":1,"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","issue":"9","citation":{"ista":"Glanc M, Van Gelderen K, Hörmayer L, Tan S, Naramoto S, Zhang X, Domjan D, Vcelarova L, Hauschild R, Johnson AJ, de Koning E, van Dop M, Rademacher E, Janson S, Wei X, Molnar G, Fendrych M, De Rybel B, Offringa R, Friml J. 2021. AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells. Current Biology. 31(9), 1918–1930.","chicago":"Glanc, Matous, K Van Gelderen, Lukas Hörmayer, Shutang Tan, S Naramoto, Xixi Zhang, David Domjan, et al. “AGC Kinases and MAB4/MEL Proteins Maintain PIN Polarity by Limiting Lateral Diffusion in Plant Cells.” <i>Current Biology</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.cub.2021.02.028\">https://doi.org/10.1016/j.cub.2021.02.028</a>.","apa":"Glanc, M., Van Gelderen, K., Hörmayer, L., Tan, S., Naramoto, S., Zhang, X., … Friml, J. (2021). AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2021.02.028\">https://doi.org/10.1016/j.cub.2021.02.028</a>","mla":"Glanc, Matous, et al. “AGC Kinases and MAB4/MEL Proteins Maintain PIN Polarity by Limiting Lateral Diffusion in Plant Cells.” <i>Current Biology</i>, vol. 31, no. 9, Elsevier, 2021, pp. 1918–30, doi:<a href=\"https://doi.org/10.1016/j.cub.2021.02.028\">10.1016/j.cub.2021.02.028</a>.","ama":"Glanc M, Van Gelderen K, Hörmayer L, et al. AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells. <i>Current Biology</i>. 2021;31(9):1918-1930. doi:<a href=\"https://doi.org/10.1016/j.cub.2021.02.028\">10.1016/j.cub.2021.02.028</a>","ieee":"M. Glanc <i>et al.</i>, “AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells,” <i>Current Biology</i>, vol. 31, no. 9. Elsevier, pp. 1918–1930, 2021.","short":"M. Glanc, K. Van Gelderen, L. Hörmayer, S. Tan, S. Naramoto, X. Zhang, D. Domjan, L. Vcelarova, R. Hauschild, A.J. Johnson, E. de Koning, M. van Dop, E. Rademacher, S. Janson, X. Wei, G. Molnar, M. Fendrych, B. De Rybel, R. Offringa, J. Friml, Current Biology 31 (2021) 1918–1930."},"publisher":"Elsevier","doi":"10.1016/j.cub.2021.02.028","article_processing_charge":"No","type":"journal_article","date_updated":"2023-09-05T13:03:34Z","_id":"9290","ddc":["580"],"page":"1918-1930","quality_controlled":"1","external_id":{"isi":["000653077800004"],"pmid":["33705718"]},"year":"2021","isi":1,"project":[{"_id":"261099A6-B435-11E9-9278-68D0E5697425","grant_number":"742985","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","call_identifier":"H2020"},{"grant_number":"I03630","name":"Molecular mechanisms of endocytic cargo recognition in plants","call_identifier":"FWF","_id":"26538374-B435-11E9-9278-68D0E5697425"}],"status":"public","publication":"Current Biology","date_published":"2021-03-10T00:00:00Z","acknowledgement":"We acknowledge Ben Scheres, Christian Luschnig, and Claus Schwechheimer for sharing published material. We thank Monika Hrtyan and Dorota Jaworska at IST Austria and Gerda Lamers and Ward de Winter at IBL Netherlands for technical assistance; Corinna Hartinger, Jakub Hajný, Lesia Rodriguez, Mingyue Li, and Lindy Abas for experimental support; and the Bioimaging Facility at IST Austria and the Bioimaging Core at VIB for imaging support. We are grateful to Christian Luschnig, Lindy Abas, and Roman Pleskot for valuable discussions. We also acknowledge the EMBO for supporting M.G. with a long-term fellowship ( ALTF 1005-2019 ) during the finalization and revision of this manuscript in the laboratory of B.D.R., and we thank R. Pierik for allowing K.V.G. to work on this manuscript during a postdoc in his laboratory at Utrecht University. This work was supported by grants from the European Research Council under the European Union’s Seventh Framework Programme (ERC grant agreements 742985 to J.F., 714055 to B.D.R., and 803048 to M.F.), the Austrian Science Fund (FWF; I 3630-B25 to J.F.), Chemical Sciences (partly) financed by the Dutch Research Council (NWO-CW TOP 700.58.301 to R.O.), the Dutch Research Council (NWO-VICI 865.17.002 to R. Pierik), Grants-in-Aid from the Ministry of Education, Culture, Sports, Science and Technology, Japan (KAKENHI grant 17K17595 to S.N.), the Ministry of Education, Youth and Sports of the Czech Republic (MŠMT project NPUI-LO1417 ), and a China Scholarship Council (to X.W.).","pmid":1,"ec_funded":1},{"year":"2021","month":"03","department":[{"_id":"GeKa"}],"file":[{"file_id":"9292","creator":"gkatsaro","date_updated":"2021-03-27T13:46:17Z","date_created":"2021-03-27T13:46:17Z","file_size":10616071,"checksum":"635df3c08fc13c3dac008cd421aefbe4","relation":"main_file","content_type":"application/x-zip-compressed","access_level":"open_access","file_name":"Raw Data- Enhancement of Superconductivity in a Planar Ge hole gas.zip","success":1},{"success":1,"file_name":"README.txt","access_level":"open_access","content_type":"text/plain","relation":"main_file","checksum":"12b3ca69ae7509a346711baae0b02a75","date_created":"2021-04-01T07:52:56Z","file_size":470,"date_updated":"2021-04-01T07:52:56Z","creator":"dernst","file_id":"9302"}],"oa":1,"status":"public","citation":{"ista":"Katsaros G. 2021. Raw transport data for: Enhancement of proximity induced superconductivity in planar germanium, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:9291\">10.15479/AT:ISTA:9291</a>.","chicago":"Katsaros, Georgios. “Raw Transport Data for: Enhancement of Proximity Induced Superconductivity in Planar Germanium.” Institute of Science and Technology Austria, 2021. <a href=\"https://doi.org/10.15479/AT:ISTA:9291\">https://doi.org/10.15479/AT:ISTA:9291</a>.","apa":"Katsaros, G. (2021). Raw transport data for: Enhancement of proximity induced superconductivity in planar germanium. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:9291\">https://doi.org/10.15479/AT:ISTA:9291</a>","mla":"Katsaros, Georgios. <i>Raw Transport Data for: Enhancement of Proximity Induced Superconductivity in Planar Germanium</i>. Institute of Science and Technology Austria, 2021, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:9291\">10.15479/AT:ISTA:9291</a>.","ama":"Katsaros G. Raw transport data for: Enhancement of proximity induced superconductivity in planar germanium. 2021. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:9291\">10.15479/AT:ISTA:9291</a>","ieee":"G. Katsaros, “Raw transport data for: Enhancement of proximity induced superconductivity in planar germanium.” Institute of Science and Technology Austria, 2021.","short":"G. Katsaros, (2021)."},"date_published":"2021-03-29T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.15479/AT:ISTA:9291","author":[{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","full_name":"Katsaros, Georgios","last_name":"Katsaros","first_name":"Georgios","orcid":"0000-0001-8342-202X"}],"day":"29","article_processing_charge":"No","publisher":"Institute of Science and Technology Austria","title":"Raw transport data for: Enhancement of proximity induced superconductivity in planar germanium","oa_version":"Published Version","date_updated":"2024-02-21T12:37:14Z","_id":"9291","type":"research_data","date_created":"2021-03-27T13:47:49Z","has_accepted_license":"1","license":"https://creativecommons.org/publicdomain/zero/1.0/","tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","short":"CC0 (1.0)"},"abstract":[{"text":"This .zip File contains the transport data for figures presented in the main text and supplementary material of \"Enhancement of Proximity Induced Superconductivity in Planar Germanium\" by K. Aggarwal, et. al. \r\nThe measurements were done using Labber Software and the data is stored in the hdf5 file format. The files can be opened using either the Labber Log Browser (https://labber.org/overview/) or Labber Python API (http://labber.org/online-doc/api/LogFile.html).","lang":"eng"}],"ddc":["530"],"file_date_updated":"2021-04-01T07:52:56Z"},{"abstract":[{"lang":"eng","text":"We consider planning problems for graphs, Markov Decision Processes (MDPs), and games on graphs in an explicit state space. While graphs represent the most basic planning model, MDPs represent interaction with nature and games on graphs represent interaction with an adversarial environment. We consider two planning problems with k different target sets: (a) the coverage problem asks whether there is a plan for each individual target set; and (b) the sequential target reachability problem asks whether the targets can be reached in a given sequence. For the coverage problem, we present a linear-time algorithm for graphs, and quadratic conditional lower bound for MDPs and games on graphs. For the sequential target problem, we present a linear-time algorithm for graphs, a sub-quadratic algorithm for MDPs, and a quadratic conditional lower bound for games on graphs. Our results with conditional lower bounds, based on the boolean matrix multiplication (BMM) conjecture and strong exponential time hypothesis (SETH), establish (i) model-separation results showing that for the coverage problem MDPs and games on graphs are harder than graphs, and for the sequential reachability problem games on graphs are harder than MDPs and graphs; and (ii) problem-separation results showing that for MDPs the coverage problem is harder than the sequential target problem."}],"intvolume":"       297","publication_status":"published","publication_identifier":{"issn":["0004-3702"]},"scopus_import":"1","day":"16","author":[{"first_name":"Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee"},{"first_name":"Wolfgang","last_name":"Dvořák","full_name":"Dvořák, Wolfgang"},{"full_name":"Henzinger, Monika H","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","last_name":"Henzinger","orcid":"0000-0002-5008-6530","first_name":"Monika H"},{"first_name":"Alexander","last_name":"Svozil","full_name":"Svozil, Alexander"}],"oa_version":"Preprint","title":"Algorithms and conditional lower bounds for planning problems","volume":297,"date_created":"2021-03-28T22:01:40Z","article_type":"original","oa":1,"language":[{"iso":"eng"}],"citation":{"ieee":"K. Chatterjee, W. Dvořák, M. H. Henzinger, and A. Svozil, “Algorithms and conditional lower bounds for planning problems,” <i>Artificial Intelligence</i>, vol. 297, no. 8. Elsevier, 2021.","short":"K. Chatterjee, W. Dvořák, M.H. Henzinger, A. Svozil, Artificial Intelligence 297 (2021).","ama":"Chatterjee K, Dvořák W, Henzinger MH, Svozil A. Algorithms and conditional lower bounds for planning problems. <i>Artificial Intelligence</i>. 2021;297(8). doi:<a href=\"https://doi.org/10.1016/j.artint.2021.103499\">10.1016/j.artint.2021.103499</a>","apa":"Chatterjee, K., Dvořák, W., Henzinger, M. H., &#38; Svozil, A. (2021). Algorithms and conditional lower bounds for planning problems. <i>Artificial Intelligence</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.artint.2021.103499\">https://doi.org/10.1016/j.artint.2021.103499</a>","mla":"Chatterjee, Krishnendu, et al. “Algorithms and Conditional Lower Bounds for Planning Problems.” <i>Artificial Intelligence</i>, vol. 297, no. 8, 103499, Elsevier, 2021, doi:<a href=\"https://doi.org/10.1016/j.artint.2021.103499\">10.1016/j.artint.2021.103499</a>.","ista":"Chatterjee K, Dvořák W, Henzinger MH, Svozil A. 2021. Algorithms and conditional lower bounds for planning problems. Artificial Intelligence. 297(8), 103499.","chicago":"Chatterjee, Krishnendu, Wolfgang Dvořák, Monika H Henzinger, and Alexander Svozil. “Algorithms and Conditional Lower Bounds for Planning Problems.” <i>Artificial Intelligence</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.artint.2021.103499\">https://doi.org/10.1016/j.artint.2021.103499</a>."},"issue":"8","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"03","arxiv":1,"department":[{"_id":"KrCh"}],"article_number":"103499","main_file_link":[{"url":"https://arxiv.org/abs/1804.07031","open_access":"1"}],"quality_controlled":"1","article_processing_charge":"No","doi":"10.1016/j.artint.2021.103499","publisher":"Elsevier","_id":"9293","date_updated":"2023-09-26T10:41:42Z","type":"journal_article","publication":"Artificial Intelligence","status":"public","date_published":"2021-03-16T00:00:00Z","isi":1,"year":"2021","related_material":{"record":[{"status":"public","relation":"earlier_version","id":"35"}]},"external_id":{"arxiv":["1804.07031"],"isi":["000657537500003"]}},{"author":[{"last_name":"Gärtner","full_name":"Gärtner, Florian R","id":"397A88EE-F248-11E8-B48F-1D18A9856A87","first_name":"Florian R","orcid":"0000-0001-6120-3723"},{"full_name":"Sixt, Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","last_name":"Sixt","first_name":"Michael K","orcid":"0000-0002-6620-9179"}],"scopus_import":"1","day":"22","title":"Engaging the front wheels to drive through fibrous terrain","oa_version":"Published Version","volume":56,"article_type":"original","date_created":"2021-03-28T22:01:41Z","intvolume":"        56","abstract":[{"text":"In this issue of Developmental Cell, Doyle and colleagues identify periodic anterior contraction as a characteristic feature of fibroblasts and mesenchymal cancer cells embedded in 3D collagen gels. This contractile mechanism generates a matrix prestrain required for crawling in fibrous 3D environments.","lang":"eng"}],"publication_status":"published","publication_identifier":{"issn":["15345807"],"eissn":["18781551"]},"month":"03","department":[{"_id":"MiSi"}],"oa":1,"language":[{"iso":"eng"}],"issue":"6","citation":{"apa":"Gärtner, F. R., &#38; Sixt, M. K. (2021). Engaging the front wheels to drive through fibrous terrain. <i>Developmental Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2021.03.002\">https://doi.org/10.1016/j.devcel.2021.03.002</a>","mla":"Gärtner, Florian R., and Michael K. Sixt. “Engaging the Front Wheels to Drive through Fibrous Terrain.” <i>Developmental Cell</i>, vol. 56, no. 6, Elsevier, 2021, pp. 723–25, doi:<a href=\"https://doi.org/10.1016/j.devcel.2021.03.002\">10.1016/j.devcel.2021.03.002</a>.","chicago":"Gärtner, Florian R, and Michael K Sixt. “Engaging the Front Wheels to Drive through Fibrous Terrain.” <i>Developmental Cell</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.devcel.2021.03.002\">https://doi.org/10.1016/j.devcel.2021.03.002</a>.","ista":"Gärtner FR, Sixt MK. 2021. Engaging the front wheels to drive through fibrous terrain. Developmental Cell. 56(6), 723–725.","ieee":"F. R. Gärtner and M. K. Sixt, “Engaging the front wheels to drive through fibrous terrain,” <i>Developmental Cell</i>, vol. 56, no. 6. Elsevier, pp. 723–725, 2021.","short":"F.R. Gärtner, M.K. Sixt, Developmental Cell 56 (2021) 723–725.","ama":"Gärtner FR, Sixt MK. Engaging the front wheels to drive through fibrous terrain. <i>Developmental Cell</i>. 2021;56(6):723-725. doi:<a href=\"https://doi.org/10.1016/j.devcel.2021.03.002\">10.1016/j.devcel.2021.03.002</a>"},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","doi":"10.1016/j.devcel.2021.03.002","article_processing_charge":"No","publisher":"Elsevier","date_updated":"2023-08-07T14:26:47Z","_id":"9294","type":"journal_article","page":"723-725","main_file_link":[{"url":"https://doi.org/10.1016/j.devcel.2021.03.002","open_access":"1"}],"quality_controlled":"1","year":"2021","isi":1,"external_id":{"isi":["000631681200004"],"pmid":["33756118"]},"status":"public","publication":"Developmental Cell","pmid":1,"date_published":"2021-03-22T00:00:00Z"},{"date_published":"2021-03-23T00:00:00Z","acknowledgement":"We thank two reviewers for their corrections and suggestions on the original version of this\r\npaper. This project has received funding from NSERC Grant 50503-10940-500 and from the European Union’s Horizon 2020 research and innovation programme under the Marie SkłodowskaCurie grant agreement No 754411, IST, Klosterneuburg, Austria.","ec_funded":1,"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"}],"publication":"Journal of Graph Theory","status":"public","external_id":{"isi":["000631693200001"],"arxiv":["2002.02287"]},"year":"2021","isi":1,"quality_controlled":"1","main_file_link":[{"url":"https://arxiv.org/abs/2002.02287","open_access":"1"}],"page":"426-440","type":"journal_article","date_updated":"2023-08-07T14:26:15Z","_id":"9295","publisher":"Wiley","doi":"10.1002/jgt.22665","article_processing_charge":"No","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","issue":"3","citation":{"mla":"Arroyo Guevara, Alan M., et al. “Drawings of Complete Graphs in the Projective Plane.” <i>Journal of Graph Theory</i>, vol. 97, no. 3, Wiley, 2021, pp. 426–40, doi:<a href=\"https://doi.org/10.1002/jgt.22665\">10.1002/jgt.22665</a>.","apa":"Arroyo Guevara, A. M., Mcquillan, D., Richter, R. B., Salazar, G., &#38; Sullivan, M. (2021). Drawings of complete graphs in the projective plane. <i>Journal of Graph Theory</i>. Wiley. <a href=\"https://doi.org/10.1002/jgt.22665\">https://doi.org/10.1002/jgt.22665</a>","chicago":"Arroyo Guevara, Alan M, Dan Mcquillan, R. Bruce Richter, Gelasio Salazar, and Matthew Sullivan. “Drawings of Complete Graphs in the Projective Plane.” <i>Journal of Graph Theory</i>. Wiley, 2021. <a href=\"https://doi.org/10.1002/jgt.22665\">https://doi.org/10.1002/jgt.22665</a>.","ista":"Arroyo Guevara AM, Mcquillan D, Richter RB, Salazar G, Sullivan M. 2021. Drawings of complete graphs in the projective plane. Journal of Graph Theory. 97(3), 426–440.","short":"A.M. Arroyo Guevara, D. Mcquillan, R.B. Richter, G. Salazar, M. Sullivan, Journal of Graph Theory 97 (2021) 426–440.","ieee":"A. M. Arroyo Guevara, D. Mcquillan, R. B. Richter, G. Salazar, and M. Sullivan, “Drawings of complete graphs in the projective plane,” <i>Journal of Graph Theory</i>, vol. 97, no. 3. Wiley, pp. 426–440, 2021.","ama":"Arroyo Guevara AM, Mcquillan D, Richter RB, Salazar G, Sullivan M. Drawings of complete graphs in the projective plane. <i>Journal of Graph Theory</i>. 2021;97(3):426-440. doi:<a href=\"https://doi.org/10.1002/jgt.22665\">10.1002/jgt.22665</a>"},"language":[{"iso":"eng"}],"oa":1,"department":[{"_id":"UlWa"}],"arxiv":1,"month":"03","publication_status":"published","publication_identifier":{"eissn":["1097-0118"],"issn":["0364-9024"]},"abstract":[{"lang":"eng","text":"Hill's Conjecture states that the crossing number  cr(𝐾𝑛)  of the complete graph  𝐾𝑛  in the plane (equivalently, the sphere) is  14⌊𝑛2⌋⌊𝑛−12⌋⌊𝑛−22⌋⌊𝑛−32⌋=𝑛4/64+𝑂(𝑛3) . Moon proved that the expected number of crossings in a spherical drawing in which the points are randomly distributed and joined by geodesics is precisely  𝑛4/64+𝑂(𝑛3) , thus matching asymptotically the conjectured value of  cr(𝐾𝑛) . Let  cr𝑃(𝐺)  denote the crossing number of a graph  𝐺  in the projective plane. Recently, Elkies proved that the expected number of crossings in a naturally defined random projective plane drawing of  𝐾𝑛  is  (𝑛4/8𝜋2)+𝑂(𝑛3) . In analogy with the relation of Moon's result to Hill's conjecture, Elkies asked if  lim𝑛→∞ cr𝑃(𝐾𝑛)/𝑛4=1/8𝜋2 . We construct drawings of  𝐾𝑛  in the projective plane that disprove this."}],"intvolume":"        97","article_type":"original","date_created":"2021-03-28T22:01:41Z","volume":97,"title":"Drawings of complete graphs in the projective plane","oa_version":"Preprint","author":[{"orcid":"0000-0003-2401-8670","first_name":"Alan M","id":"3207FDC6-F248-11E8-B48F-1D18A9856A87","full_name":"Arroyo Guevara, Alan M","last_name":"Arroyo Guevara"},{"full_name":"Mcquillan, Dan","last_name":"Mcquillan","first_name":"Dan"},{"last_name":"Richter","full_name":"Richter, R. Bruce","first_name":"R. Bruce"},{"last_name":"Salazar","full_name":"Salazar, Gelasio","first_name":"Gelasio"},{"first_name":"Matthew","full_name":"Sullivan, Matthew","last_name":"Sullivan"}],"day":"23","scopus_import":"1"},{"department":[{"_id":"UlWa"},{"_id":"HeEd"},{"_id":"KrCh"}],"month":"02","arxiv":1,"citation":{"short":"O. Aichholzer, A.M. Arroyo Guevara, Z. Masárová, I. Parada, D. Perz, A. Pilz, J. Tkadlec, B. Vogtenhuber, in:, 15th International Conference on Algorithms and Computation, Springer Nature, 2021, pp. 221–233.","ieee":"O. Aichholzer <i>et al.</i>, “On compatible matchings,” in <i>15th International Conference on Algorithms and Computation</i>, Yangon, Myanmar, 2021, vol. 12635, pp. 221–233.","ama":"Aichholzer O, Arroyo Guevara AM, Masárová Z, et al. On compatible matchings. In: <i>15th International Conference on Algorithms and Computation</i>. Vol 12635. Springer Nature; 2021:221-233. doi:<a href=\"https://doi.org/10.1007/978-3-030-68211-8_18\">10.1007/978-3-030-68211-8_18</a>","mla":"Aichholzer, Oswin, et al. “On Compatible Matchings.” <i>15th International Conference on Algorithms and Computation</i>, vol. 12635, Springer Nature, 2021, pp. 221–33, doi:<a href=\"https://doi.org/10.1007/978-3-030-68211-8_18\">10.1007/978-3-030-68211-8_18</a>.","apa":"Aichholzer, O., Arroyo Guevara, A. M., Masárová, Z., Parada, I., Perz, D., Pilz, A., … Vogtenhuber, B. (2021). On compatible matchings. In <i>15th International Conference on Algorithms and Computation</i> (Vol. 12635, pp. 221–233). Yangon, Myanmar: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-030-68211-8_18\">https://doi.org/10.1007/978-3-030-68211-8_18</a>","chicago":"Aichholzer, Oswin, Alan M Arroyo Guevara, Zuzana Masárová, Irene Parada, Daniel Perz, Alexander Pilz, Josef Tkadlec, and Birgit Vogtenhuber. “On Compatible Matchings.” In <i>15th International Conference on Algorithms and Computation</i>, 12635:221–33. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/978-3-030-68211-8_18\">https://doi.org/10.1007/978-3-030-68211-8_18</a>.","ista":"Aichholzer O, Arroyo Guevara AM, Masárová Z, Parada I, Perz D, Pilz A, Tkadlec J, Vogtenhuber B. 2021. On compatible matchings. 15th International Conference on Algorithms and Computation. WALCOM: Algorithms and Computation, LNCS, vol. 12635, 221–233."},"user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","oa":1,"language":[{"iso":"eng"}],"volume":12635,"date_created":"2021-03-28T22:01:41Z","author":[{"last_name":"Aichholzer","full_name":"Aichholzer, Oswin","first_name":"Oswin"},{"orcid":"0000-0003-2401-8670","first_name":"Alan M","id":"3207FDC6-F248-11E8-B48F-1D18A9856A87","full_name":"Arroyo Guevara, Alan M","last_name":"Arroyo Guevara"},{"first_name":"Zuzana","orcid":"0000-0002-6660-1322","id":"45CFE238-F248-11E8-B48F-1D18A9856A87","full_name":"Masárová, Zuzana","last_name":"Masárová"},{"full_name":"Parada, Irene","last_name":"Parada","first_name":"Irene"},{"first_name":"Daniel","last_name":"Perz","full_name":"Perz, Daniel"},{"last_name":"Pilz","full_name":"Pilz, Alexander","first_name":"Alexander"},{"orcid":"0000-0002-1097-9684","first_name":"Josef","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87","full_name":"Tkadlec, Josef","last_name":"Tkadlec"},{"first_name":"Birgit","full_name":"Vogtenhuber, Birgit","last_name":"Vogtenhuber"}],"day":"16","scopus_import":"1","oa_version":"Preprint","title":"On compatible matchings","publication_identifier":{"issn":["03029743"],"isbn":["9783030682101"],"eissn":["16113349"]},"publication_status":"published","abstract":[{"lang":"eng","text":" matching is compatible to two or more labeled point sets of size n with labels   {1,…,n}  if its straight-line drawing on each of these point sets is crossing-free. We study the maximum number of edges in a matching compatible to two or more labeled point sets in general position in the plane. We show that for any two labeled convex sets of n points there exists a compatible matching with   ⌊2n−−√⌋  edges. More generally, for any   ℓ  labeled point sets we construct compatible matchings of size   Ω(n1/ℓ) . As a corresponding upper bound, we use probabilistic arguments to show that for any   ℓ  given sets of n points there exists a labeling of each set such that the largest compatible matching has   O(n2/(ℓ+1))  edges. Finally, we show that   Θ(logn)  copies of any set of n points are necessary and sufficient for the existence of a labeling such that any compatible matching consists only of a single edge."}],"intvolume":"     12635","year":"2021","external_id":{"arxiv":["2101.03928"]},"related_material":{"record":[{"relation":"later_version","status":"public","id":"11938"}]},"ec_funded":1,"date_published":"2021-02-16T00:00:00Z","acknowledgement":"A.A. funded by the Marie Skłodowska-Curie grant agreement No. 754411. Z.M. partially funded by Wittgenstein Prize, Austrian Science Fund (FWF), grant no. Z 342-N31. I.P., D.P., and B.V. partially supported by FWF within the collaborative DACH project Arrangements and Drawings as FWF project I 3340-N35. A.P. supported by a Schrödinger fellowship of the FWF: J-3847-N35. J.T. partially supported by ERC Start grant no. (279307: Graph Games), FWF grant no. P23499-N23 and S11407-N23 (RiSE).","conference":{"end_date":"2021-03-02","start_date":"2021-02-28","name":"WALCOM: Algorithms and Computation","location":"Yangon, Myanmar"},"project":[{"call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"_id":"268116B8-B435-11E9-9278-68D0E5697425","name":"The Wittgenstein Prize","grant_number":"Z00342","call_identifier":"FWF"},{"_id":"2581B60A-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications","grant_number":"279307"},{"_id":"2584A770-B435-11E9-9278-68D0E5697425","name":"Modern Graph Algorithmic Techniques in Formal Verification","grant_number":"P 23499-N23","call_identifier":"FWF"},{"_id":"25863FF4-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Game Theory","grant_number":"S11407"}],"status":"public","publication":"15th International Conference on Algorithms and Computation","date_updated":"2023-02-21T16:33:44Z","_id":"9296","type":"conference","doi":"10.1007/978-3-030-68211-8_18","article_processing_charge":"No","alternative_title":["LNCS"],"publisher":"Springer Nature","main_file_link":[{"url":"https://arxiv.org/abs/2101.03928","open_access":"1"}],"quality_controlled":"1","page":"221-233"},{"publication_identifier":{"eissn":["1469-7645"],"issn":["0022-1120"]},"publication_status":"published","intvolume":"       915","abstract":[{"lang":"eng","text":"We report the results of an experimental investigation into the decay of turbulence in plane Couette–Poiseuille flow using ‘quench’ experiments where the flow laminarises after a sudden reduction in Reynolds number Re. Specifically, we study the velocity field in the streamwise–spanwise plane. We show that the spanwise velocity containing rolls decays faster than the streamwise velocity, which displays elongated regions of higher or lower velocity called streaks. At final Reynolds numbers above 425, the decay of streaks displays two stages: first a slow decay when rolls are present and secondly a more rapid decay of streaks alone. The difference in behaviour results from the regeneration of streaks by rolls, called the lift-up effect. We define the turbulent fraction as the portion of the flow containing turbulence and this is estimated by thresholding the spanwise velocity component. It decreases linearly with time in the whole range of final Re. The corresponding decay slope increases linearly with final Re. The extrapolated value at which this decay slope vanishes is Reaz≈656±10, close to Reg≈670 at which turbulence is self-sustained. The decay of the energy computed from the spanwise velocity component is found to be exponential. The corresponding decay rate increases linearly with Re, with an extrapolated vanishing value at ReAz≈688±10. This value is also close to the value at which the turbulence is self-sustained, showing that valuable information on the transition can be obtained over a wide range of Re."}],"article_type":"original","date_created":"2021-03-28T22:01:42Z","volume":915,"oa_version":"Preprint","title":"Decay of streaks and rolls in plane Couette-Poiseuille flow","author":[{"first_name":"T.","last_name":"Liu","full_name":"Liu, T."},{"full_name":"Semin, B.","last_name":"Semin","first_name":"B."},{"last_name":"Klotz","full_name":"Klotz, Lukasz","id":"2C9AF1C2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1740-7635","first_name":"Lukasz"},{"full_name":"Godoy-Diana, R.","last_name":"Godoy-Diana","first_name":"R."},{"first_name":"J. E.","full_name":"Wesfreid, J. E.","last_name":"Wesfreid"},{"first_name":"T.","full_name":"Mullin, T.","last_name":"Mullin"}],"scopus_import":"1","day":"17","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"short":"T. Liu, B. Semin, L. Klotz, R. Godoy-Diana, J.E. Wesfreid, T. Mullin, Journal of Fluid Mechanics 915 (2021).","ieee":"T. Liu, B. Semin, L. Klotz, R. Godoy-Diana, J. E. Wesfreid, and T. Mullin, “Decay of streaks and rolls in plane Couette-Poiseuille flow,” <i>Journal of Fluid Mechanics</i>, vol. 915. Cambridge University Press, 2021.","ama":"Liu T, Semin B, Klotz L, Godoy-Diana R, Wesfreid JE, Mullin T. Decay of streaks and rolls in plane Couette-Poiseuille flow. <i>Journal of Fluid Mechanics</i>. 2021;915. doi:<a href=\"https://doi.org/10.1017/jfm.2021.89\">10.1017/jfm.2021.89</a>","mla":"Liu, T., et al. “Decay of Streaks and Rolls in Plane Couette-Poiseuille Flow.” <i>Journal of Fluid Mechanics</i>, vol. 915, A65, Cambridge University Press, 2021, doi:<a href=\"https://doi.org/10.1017/jfm.2021.89\">10.1017/jfm.2021.89</a>.","apa":"Liu, T., Semin, B., Klotz, L., Godoy-Diana, R., Wesfreid, J. E., &#38; Mullin, T. (2021). Decay of streaks and rolls in plane Couette-Poiseuille flow. <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/jfm.2021.89\">https://doi.org/10.1017/jfm.2021.89</a>","ista":"Liu T, Semin B, Klotz L, Godoy-Diana R, Wesfreid JE, Mullin T. 2021. Decay of streaks and rolls in plane Couette-Poiseuille flow. Journal of Fluid Mechanics. 915, A65.","chicago":"Liu, T., B. Semin, Lukasz Klotz, R. Godoy-Diana, J. E. Wesfreid, and T. Mullin. “Decay of Streaks and Rolls in Plane Couette-Poiseuille Flow.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2021. <a href=\"https://doi.org/10.1017/jfm.2021.89\">https://doi.org/10.1017/jfm.2021.89</a>."},"language":[{"iso":"eng"}],"oa":1,"article_number":"A65","department":[{"_id":"BjHo"}],"month":"03","arxiv":1,"quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2008.08851"}],"type":"journal_article","date_updated":"2023-08-07T14:30:11Z","_id":"9297","publisher":"Cambridge University Press","doi":"10.1017/jfm.2021.89","article_processing_charge":"No","date_published":"2021-03-17T00:00:00Z","acknowledgement":"We gratefully acknowledge Joran Rolland, Yohann Duguet, Romain Monchaux, S´ebastien Gom´e, Laurette Tuckerman, Dwight Barkley, Olivier Dauchot and Sabine Bottin for fruitful discussions. We thank Xavier Benoit-Gonin, Amaury Fourgeaud, Thierry Darnige, Olivier Brouard and Justine Laurent for technical help. This work has benefited from the ANR TransFlow, and by starting grants obtained by B.S. from CNRS (INSIS) and ESPCI. T.M. was\r\nsupported by a Joliot visiting professorship grant from ESPCI.","status":"public","publication":"Journal of Fluid Mechanics","external_id":{"arxiv":["2008.08851"],"isi":["000629677500001"]},"year":"2021","isi":1},{"intvolume":"        17","abstract":[{"text":"In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field. ","lang":"eng"}],"publication_status":"published","publication_identifier":{"eissn":["1554-8635"],"issn":["1554-8627"]},"author":[{"last_name":"Klionsky","full_name":"Klionsky, Daniel J.","first_name":"Daniel J."},{"first_name":"Amal Kamal","full_name":"Abdel-Aziz, Amal Kamal","last_name":"Abdel-Aziz"},{"last_name":"Abdelfatah","full_name":"Abdelfatah, Sara","first_name":"Sara"},{"last_name":"Abdellatif","full_name":"Abdellatif, Mahmoud","first_name":"Mahmoud"},{"full_name":"Abdoli, Asghar","last_name":"Abdoli","first_name":"Asghar"},{"first_name":"Steffen","last_name":"Abel","full_name":"Abel, Steffen"},{"full_name":"Abeliovich, Hagai","last_name":"Abeliovich","first_name":"Hagai"},{"last_name":"Abildgaard","full_name":"Abildgaard, Marie H.","first_name":"Marie H."},{"first_name":"Yakubu Princely","last_name":"Abudu","full_name":"Abudu, Yakubu Princely"},{"last_name":"Acevedo-Arozena","full_name":"Acevedo-Arozena, Abraham","first_name":"Abraham"},{"full_name":"Adamopoulos, Iannis E.","last_name":"Adamopoulos","first_name":"Iannis E."},{"first_name":"Khosrow","full_name":"Adeli, Khosrow","last_name":"Adeli"},{"first_name":"Timon E.","full_name":"Adolph, Timon E.","last_name":"Adolph"},{"first_name":"Annagrazia","last_name":"Adornetto","full_name":"Adornetto, Annagrazia"},{"full_name":"Aflaki, Elma","last_name":"Aflaki","first_name":"Elma"},{"first_name":"Galila","full_name":"Agam, Galila","last_name":"Agam"},{"last_name":"Agarwal","full_name":"Agarwal, Anupam","first_name":"Anupam"},{"last_name":"Aggarwal","full_name":"Aggarwal, Bharat B.","first_name":"Bharat B."},{"first_name":"Maria","full_name":"Agnello, Maria","last_name":"Agnello"},{"first_name":"Patrizia","full_name":"Agostinis, Patrizia","last_name":"Agostinis"},{"first_name":"Javed N.","last_name":"Agrewala","full_name":"Agrewala, Javed N."},{"first_name":"Alexander","last_name":"Agrotis","full_name":"Agrotis, Alexander"},{"first_name":"Patricia V.","full_name":"Aguilar, Patricia V.","last_name":"Aguilar"},{"last_name":"Ahmad","full_name":"Ahmad, S. Tariq","first_name":"S. Tariq"},{"first_name":"Zubair M.","last_name":"Ahmed","full_name":"Ahmed, Zubair M."},{"first_name":"Ulises","last_name":"Ahumada-Castro","full_name":"Ahumada-Castro, Ulises"},{"first_name":"Sonja","last_name":"Aits","full_name":"Aits, Sonja"},{"full_name":"Aizawa, Shu","last_name":"Aizawa","first_name":"Shu"},{"full_name":"Akkoc, Yunus","last_name":"Akkoc","first_name":"Yunus"},{"full_name":"Akoumianaki, Tonia","last_name":"Akoumianaki","first_name":"Tonia"},{"first_name":"Hafize Aysin","last_name":"Akpinar","full_name":"Akpinar, Hafize Aysin"},{"full_name":"Al-Abd, Ahmed M.","last_name":"Al-Abd","first_name":"Ahmed M."},{"first_name":"Lina","full_name":"Al-Akra, Lina","last_name":"Al-Akra"},{"first_name":"Abeer","last_name":"Al-Gharaibeh","full_name":"Al-Gharaibeh, Abeer"},{"first_name":"Moulay A.","last_name":"Alaoui-Jamali","full_name":"Alaoui-Jamali, Moulay A."},{"full_name":"Alberti, Simon","last_name":"Alberti","first_name":"Simon"},{"last_name":"Alcocer-Gómez","full_name":"Alcocer-Gómez, Elísabet","first_name":"Elísabet"},{"last_name":"Alessandri","full_name":"Alessandri, Cristiano","first_name":"Cristiano"},{"first_name":"Muhammad","last_name":"Ali","full_name":"Ali, Muhammad"},{"first_name":"M. Abdul","full_name":"Alim Al-Bari, M. 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J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., … Tong, C. K. (2021). Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). <i>Autophagy</i>. Taylor &#38; Francis. <a href=\"https://doi.org/10.1080/15548627.2020.1797280\">https://doi.org/10.1080/15548627.2020.1797280</a>","mla":"Klionsky, Daniel J., et al. “Guidelines for the Use and Interpretation of Assays for Monitoring Autophagy (4th Edition).” <i>Autophagy</i>, vol. 17, no. 1, Taylor &#38; Francis, 2021, pp. 1–382, doi:<a href=\"https://doi.org/10.1080/15548627.2020.1797280\">10.1080/15548627.2020.1797280</a>.","chicago":"Klionsky, Daniel J., Amal Kamal Abdel-Aziz, Sara Abdelfatah, Mahmoud Abdellatif, Asghar Abdoli, Steffen Abel, Hagai Abeliovich, et al. “Guidelines for the Use and Interpretation of Assays for Monitoring Autophagy (4th Edition).” <i>Autophagy</i>. Taylor &#38; Francis, 2021. <a href=\"https://doi.org/10.1080/15548627.2020.1797280\">https://doi.org/10.1080/15548627.2020.1797280</a>.","ista":"Klionsky DJ et al. 2021. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy. 17(1), 1–382.","ieee":"D. J. Klionsky <i>et al.</i>, “Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition),” <i>Autophagy</i>, vol. 17, no. 1. Taylor &#38; Francis, pp. 1–382, 2021.","short":"D.J. Klionsky, A.K. Abdel-Aziz, S. Abdelfatah, M. Abdellatif, A. Abdoli, S. Abel, H. Abeliovich, M.H. Abildgaard, Y.P. Abudu, A. Acevedo-Arozena, I.E. Adamopoulos, K. Adeli, T.E. Adolph, A. Adornetto, E. Aflaki, G. Agam, A. Agarwal, B.B. Aggarwal, M. Agnello, P. Agostinis, J.N. Agrewala, A. Agrotis, P.V. Aguilar, S.T. Ahmad, Z.M. Ahmed, U. Ahumada-Castro, S. Aits, S. Aizawa, Y. Akkoc, T. Akoumianaki, H.A. Akpinar, A.M. Al-Abd, L. Al-Akra, A. Al-Gharaibeh, M.A. Alaoui-Jamali, S. Alberti, E. 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Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). <i>Autophagy</i>. 2021;17(1):1-382. doi:<a href=\"https://doi.org/10.1080/15548627.2020.1797280\">10.1080/15548627.2020.1797280</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"02","department":[{"_id":"JiFr"},{"_id":"CaHe"}],"page":"1-382","main_file_link":[{"url":"https://doi.org/10.1080/15548627.2020.1797280","open_access":"1"}],"quality_controlled":"1","doi":"10.1080/15548627.2020.1797280","article_processing_charge":"No","publisher":"Taylor & Francis","date_updated":"2023-10-16T09:43:56Z","_id":"9298","type":"journal_article","status":"public","publication":"Autophagy","pmid":1,"date_published":"2021-02-08T00:00:00Z","acknowledgement":"This work was supported by the National Institute of General Medical Sciences [GM131919]. Due to space and other limitations, it is not possible to include all other sources of financial support.","isi":1,"year":"2021","external_id":{"pmid":["33634751"],"isi":["000636121800001"]}},{"isi":1,"year":"2021","external_id":{"isi":["000637398300050"]},"keyword":["small-angle X-ray scattering","oxygen reduction","disproportionation","Li-air battery"],"status":"public","publication":"Proceedings of the National Academy of Sciences","date_published":"2021-04-06T00:00:00Z","acknowledgement":"S.A.F. and C.P. are indebted to the European Research Council under the European Union's Horizon 2020 research and innovation program (Grant Agreement No. 636069), the Austrian Federal Ministry of Science, Research and Economy, and the Austrian Research Promotion Agency (Grant No. 845364). We acknowledge A. Zankel and H. Schroettner for support with SEM measurements. C.P. thanks N. Kostoglou, C. Koczwara, M. Hartmann, and M. Burian for discussions on gas sorption analysis, C++ programming, Monte Carlo modeling, and in situ SAXS experiments, respectively. We thank S. Stadlbauer for help with Karl Fischer titration, R. Riccò for gas sorption measurements, and acknowledge Graz University of Technology for support through the Lead Project LP-03. Likewise, the use of SOMAPP Lab, a core facility supported by the Austrian Federal Ministry of Education, Science and Research, the Graz University of Technology, the University of Graz, and Anton Paar GmbH is acknowledged. S.A.F. is indebted to Institute of Science and Technology Austria (IST Austria) for support. This research was supported by the Scientific Service Units of IST Austria through resources provided by the Electron Microscopy Facility.","article_processing_charge":"No","doi":"10.1073/pnas.2021893118","publisher":"National Academy of Sciences","_id":"9301","date_updated":"2023-09-05T13:27:18Z","type":"journal_article","main_file_link":[{"url":"https://doi.org/10.26434/chemrxiv.11447775","open_access":"1"}],"quality_controlled":"1","month":"04","department":[{"_id":"StFr"},{"_id":"EM-Fac"}],"article_number":"e2021893118","oa":1,"language":[{"iso":"eng"}],"citation":{"apa":"Prehal, C., Samojlov, A., Nachtnebel, M., Lovicar, L., Kriechbaum, M., Amenitsch, H., &#38; Freunberger, S. A. (2021). In situ small-angle X-ray scattering reveals solution phase discharge of Li–O2 batteries with weakly solvating electrolytes. <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.2021893118\">https://doi.org/10.1073/pnas.2021893118</a>","mla":"Prehal, Christian, et al. “In Situ Small-Angle X-Ray Scattering Reveals Solution Phase Discharge of Li–O2 Batteries with Weakly Solvating Electrolytes.” <i>Proceedings of the National Academy of Sciences</i>, vol. 118, no. 14, e2021893118, National Academy of Sciences, 2021, doi:<a href=\"https://doi.org/10.1073/pnas.2021893118\">10.1073/pnas.2021893118</a>.","chicago":"Prehal, Christian, Aleksej Samojlov, Manfred Nachtnebel, Ludek Lovicar, Manfred Kriechbaum, Heinz Amenitsch, and Stefan Alexander Freunberger. “In Situ Small-Angle X-Ray Scattering Reveals Solution Phase Discharge of Li–O2 Batteries with Weakly Solvating Electrolytes.” <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences, 2021. <a href=\"https://doi.org/10.1073/pnas.2021893118\">https://doi.org/10.1073/pnas.2021893118</a>.","ista":"Prehal C, Samojlov A, Nachtnebel M, Lovicar L, Kriechbaum M, Amenitsch H, Freunberger SA. 2021. In situ small-angle X-ray scattering reveals solution phase discharge of Li–O2 batteries with weakly solvating electrolytes. Proceedings of the National Academy of Sciences. 118(14), e2021893118.","ieee":"C. Prehal <i>et al.</i>, “In situ small-angle X-ray scattering reveals solution phase discharge of Li–O2 batteries with weakly solvating electrolytes,” <i>Proceedings of the National Academy of Sciences</i>, vol. 118, no. 14. National Academy of Sciences, 2021.","short":"C. Prehal, A. Samojlov, M. Nachtnebel, L. Lovicar, M. Kriechbaum, H. Amenitsch, S.A. Freunberger, Proceedings of the National Academy of Sciences 118 (2021).","ama":"Prehal C, Samojlov A, Nachtnebel M, et al. In situ small-angle X-ray scattering reveals solution phase discharge of Li–O2 batteries with weakly solvating electrolytes. <i>Proceedings of the National Academy of Sciences</i>. 2021;118(14). doi:<a href=\"https://doi.org/10.1073/pnas.2021893118\">10.1073/pnas.2021893118</a>"},"issue":"14","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","day":"06","author":[{"first_name":"Christian","last_name":"Prehal","full_name":"Prehal, Christian"},{"full_name":"Samojlov, Aleksej","last_name":"Samojlov","first_name":"Aleksej"},{"full_name":"Nachtnebel, Manfred","last_name":"Nachtnebel","first_name":"Manfred"},{"last_name":"Lovicar","full_name":"Lovicar, Ludek","id":"36DB3A20-F248-11E8-B48F-1D18A9856A87","first_name":"Ludek","orcid":"0000-0001-6206-4200"},{"first_name":"Manfred","full_name":"Kriechbaum, Manfred","last_name":"Kriechbaum"},{"full_name":"Amenitsch, Heinz","last_name":"Amenitsch","first_name":"Heinz"},{"orcid":"0000-0003-2902-5319","first_name":"Stefan Alexander","last_name":"Freunberger","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","full_name":"Freunberger, Stefan Alexander"}],"title":"In situ small-angle X-ray scattering reveals solution phase discharge of Li–O2 batteries with weakly solvating electrolytes","oa_version":"Preprint","volume":118,"date_created":"2021-03-31T07:00:01Z","article_type":"original","acknowledged_ssus":[{"_id":"EM-Fac"}],"intvolume":"       118","abstract":[{"text":"Electrodepositing insulating lithium peroxide (Li2O2) is the key process during discharge of aprotic Li–O2 batteries and determines rate, capacity, and reversibility. Current understanding states that the partition between surface adsorbed and dissolved lithium superoxide governs whether Li2O2 grows as a conformal surface film or larger particles, leading to low or high capacities, respectively. However, better understanding governing factors for Li2O2 packing density and capacity requires structural sensitive in situ metrologies. Here, we establish in situ small- and wide-angle X-ray scattering (SAXS/WAXS) as a suitable method to record the Li2O2 phase evolution with atomic to submicrometer resolution during cycling a custom-built in situ Li–O2 cell. Combined with sophisticated data analysis, SAXS allows retrieving rich quantitative structural information from complex multiphase systems. Surprisingly, we find that features are absent that would point at a Li2O2 surface film formed via two consecutive electron transfers, even in poorly solvating electrolytes thought to be prototypical for surface growth. All scattering data can be modeled by stacks of thin Li2O2 platelets potentially forming large toroidal particles. Li2O2 solution growth is further justified by rotating ring-disk electrode measurements and electron microscopy. Higher discharge overpotentials lead to smaller Li2O2 particles, but there is no transition to an electronically passivating, conformal Li2O2 coating. Hence, mass transport of reactive species rather than electronic transport through a Li2O2 film limits the discharge capacity. Provided that species mobilities and carbon surface areas are high, this allows for high discharge capacities even in weakly solvating electrolytes. The currently accepted Li–O2 reaction mechanism ought to be reconsidered.","lang":"eng"}],"publication_identifier":{"eissn":["1091-6490"],"issn":["0027-8424"]},"publication_status":"published"},{"external_id":{"isi":["000655672000005"]},"isi":1,"year":"2021","date_published":"2021-08-15T00:00:00Z","acknowledgement":"This work was supported by the European Regional Development Funds and by the Generalitat de Catalunya through the project 2017SGR1246. Y.Z, C.X, M.L, K.X and X.H thank the China Scholarship Council for the scholarship support. MI acknowledges financial support from IST Austria. YL acknowledges funding from the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 754411. ICN2\r\nacknowledges funding from Generalitat de Catalunya 2017 SGR 327 and the Spanish MINECO project ENE2017-85087-C3. ICN2 is supported by the Severo Ochoa program from the Spanish MINECO (grant no. SEV-2017-0706) and is funded by the CERCA Program/Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat Autònoma de Barcelona Materials Science PhD program.","ec_funded":1,"status":"public","publication":"Chemical Engineering Journal","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"}],"type":"journal_article","_id":"9304","date_updated":"2023-09-27T07:36:29Z","publisher":"Elsevier","article_processing_charge":"No","doi":"10.1016/j.cej.2021.129374","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://ddd.uab.cat/record/271949"}],"article_number":"129374","department":[{"_id":"MaIb"}],"month":"08","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ama":"Zhang Y, Xing C, Liu Y, et al. Influence of copper telluride nanodomains on the transport properties of n-type bismuth telluride. <i>Chemical Engineering Journal</i>. 2021;418(8). doi:<a href=\"https://doi.org/10.1016/j.cej.2021.129374\">10.1016/j.cej.2021.129374</a>","short":"Y. Zhang, C. Xing, Y. Liu, M. Li, K. Xiao, P. Guardia, S. Lee, X. Han, A. Moghaddam, J.J. Roa, J. Arbiol, M. Ibáñez, K. Pan, M. Prato, Y. Xie, A. Cabot, Chemical Engineering Journal 418 (2021).","ieee":"Y. Zhang <i>et al.</i>, “Influence of copper telluride nanodomains on the transport properties of n-type bismuth telluride,” <i>Chemical Engineering Journal</i>, vol. 418, no. 8. Elsevier, 2021.","ista":"Zhang Y, Xing C, Liu Y, Li M, Xiao K, Guardia P, Lee S, Han X, Moghaddam A, Roa JJ, Arbiol J, Ibáñez M, Pan K, Prato M, Xie Y, Cabot A. 2021. Influence of copper telluride nanodomains on the transport properties of n-type bismuth telluride. Chemical Engineering Journal. 418(8), 129374.","chicago":"Zhang, Yu, Congcong Xing, Yu Liu, Mengyao Li, Ke Xiao, Pablo Guardia, Seungho Lee, et al. “Influence of Copper Telluride Nanodomains on the Transport Properties of N-Type Bismuth Telluride.” <i>Chemical Engineering Journal</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.cej.2021.129374\">https://doi.org/10.1016/j.cej.2021.129374</a>.","mla":"Zhang, Yu, et al. “Influence of Copper Telluride Nanodomains on the Transport Properties of N-Type Bismuth Telluride.” <i>Chemical Engineering Journal</i>, vol. 418, no. 8, 129374, Elsevier, 2021, doi:<a href=\"https://doi.org/10.1016/j.cej.2021.129374\">10.1016/j.cej.2021.129374</a>.","apa":"Zhang, Y., Xing, C., Liu, Y., Li, M., Xiao, K., Guardia, P., … Cabot, A. (2021). Influence of copper telluride nanodomains on the transport properties of n-type bismuth telluride. <i>Chemical Engineering Journal</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cej.2021.129374\">https://doi.org/10.1016/j.cej.2021.129374</a>"},"issue":"8","language":[{"iso":"eng"}],"oa":1,"date_created":"2021-04-04T22:01:20Z","article_type":"original","volume":418,"title":"Influence of copper telluride nanodomains on the transport properties of n-type bismuth telluride","oa_version":"Submitted Version","scopus_import":"1","day":"15","author":[{"last_name":"Zhang","full_name":"Zhang, Yu","first_name":"Yu"},{"full_name":"Xing, Congcong","last_name":"Xing","first_name":"Congcong"},{"full_name":"Liu, Yu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","last_name":"Liu","first_name":"Yu","orcid":"0000-0001-7313-6740"},{"first_name":"Mengyao","full_name":"Li, Mengyao","last_name":"Li"},{"last_name":"Xiao","full_name":"Xiao, Ke","first_name":"Ke"},{"first_name":"Pablo","full_name":"Guardia, Pablo","last_name":"Guardia"},{"id":"BB243B88-D767-11E9-B658-BC13E6697425","full_name":"Lee, Seungho","last_name":"Lee","orcid":"0000-0002-6962-8598","first_name":"Seungho"},{"full_name":"Han, Xu","last_name":"Han","first_name":"Xu"},{"first_name":"Ahmad","full_name":"Moghaddam, Ahmad","last_name":"Moghaddam"},{"last_name":"Roa","full_name":"Roa, Joan J","first_name":"Joan J"},{"first_name":"Jordi","full_name":"Arbiol, Jordi","last_name":"Arbiol"},{"first_name":"Maria","orcid":"0000-0001-5013-2843","id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria","last_name":"Ibáñez"},{"last_name":"Pan","full_name":"Pan, Kai","first_name":"Kai"},{"first_name":"Mirko","full_name":"Prato, Mirko","last_name":"Prato"},{"first_name":"Ying","full_name":"Xie, Ying","last_name":"Xie"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"}],"publication_identifier":{"issn":["1385-8947"]},"publication_status":"published","abstract":[{"text":"The high processing cost, poor mechanical properties and moderate performance of Bi2Te3–based alloys used in thermoelectric devices limit the cost-effectiveness of this energy conversion technology. Towards solving these current challenges, in the present work, we detail a low temperature solution-based approach to produce Bi2Te3-Cu2-xTe nanocomposites with improved thermoelectric performance. Our approach consists in combining proper ratios of colloidal nanoparticles and to consolidate the resulting mixture into nanocomposites using a hot press. The transport properties of the nanocomposites are characterized and compared with those of pure Bi2Te3 nanomaterials obtained following the same procedure. In contrast with most previous works, the presence of Cu2-xTe nanodomains does not result in a significant reduction of the lattice thermal conductivity of the reference Bi2Te3 nanomaterial, which is already very low. However, the introduction of Cu2-xTe yields a nearly threefold increase of the power factor associated to a simultaneous increase of the Seebeck coefficient and electrical conductivity at temperatures above 400 K. Taking into account the band alignment of the two materials, we rationalize this increase by considering that Cu2-xTe nanostructures, with a relatively low electron affinity, are able to inject electrons into Bi2Te3, enhancing in this way its electrical conductivity. The simultaneous increase of the Seebeck coefficient is related to the energy filtering of charge carriers at energy barriers within Bi2Te3 domains associated with the accumulation of electrons in regions nearby a Cu2-xTe/Bi2Te3 heterojunction. Overall, with the incorporation of a proper amount of Cu2-xTe nanoparticles, we demonstrate a 250% improvement of the thermoelectric figure of merit of Bi2Te3.","lang":"eng"}],"intvolume":"       418"},{"year":"2021","isi":1,"external_id":{"isi":["000663442200004"]},"ec_funded":1,"acknowledgement":"This work was supported by the European Regional Development Fund and by the Spanish Ministerio de Economía y Competitividad through the project SEHTOP (ENE2016-77798-C4-3-R). MI acknowledges financial support from IST Austria. YL acknowledges funding from the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 754411. YZ, CX, XW, KX and TZ thank the China Scholarship Council for the scholarship support. ICN2 acknowledges funding from Generalitat de Catalunya 2017 SGR 327 and the Spanish MINECO project ENE2017-85087-C3. ICN2 is supported by the Severo Ochoa program from the Spanish MINECO (grant no. SEV-2017-0706) and is funded by the CERCA program/Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat Autònoma de Barcelona Materials Science Ph.D. program. M.C.S. has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 754510 (PROBIST) and the Severo Ochoa programme. P.G. acknowledges financial support from the Spanish government (MICIU) through the RTI2018-102006-J-I00 project and the Catalan Agency of Competitiveness (ACCIO) through the TecnioSpring+ Marie Sklodowska-Curie action TECSPR16-1-0082. YZ and CX contributed equally to this work.","date_published":"2021-07-01T00:00:00Z","project":[{"name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"publication":"Nano Energy","status":"public","date_updated":"2023-09-27T07:41:00Z","_id":"9305","type":"journal_article","doi":"10.1016/j.nanoen.2021.105991","article_processing_charge":"No","publisher":"Elsevier","main_file_link":[{"open_access":"1","url":"https://ddd.uab.cat/record/271947"}],"quality_controlled":"1","department":[{"_id":"MaIb"}],"article_number":"105991","month":"07","issue":"7","citation":{"mla":"Zhang, Yu, et al. “Doping-Mediated Stabilization of Copper Vacancies to Promote Thermoelectric Properties of Cu2-XS.” <i>Nano Energy</i>, vol. 85, no. 7, 105991, Elsevier, 2021, doi:<a href=\"https://doi.org/10.1016/j.nanoen.2021.105991\">10.1016/j.nanoen.2021.105991</a>.","apa":"Zhang, Y., Xing, C., Liu, Y., Spadaro, M. C., Wang, X., Li, M., … Cabot, A. (2021). Doping-mediated stabilization of copper vacancies to promote thermoelectric properties of Cu2-xS. <i>Nano Energy</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.nanoen.2021.105991\">https://doi.org/10.1016/j.nanoen.2021.105991</a>","ista":"Zhang Y, Xing C, Liu Y, Spadaro MC, Wang X, Li M, Xiao K, Zhang T, Guardia P, Lim KH, Moghaddam AO, Llorca J, Arbiol J, Ibáñez M, Cabot A. 2021. Doping-mediated stabilization of copper vacancies to promote thermoelectric properties of Cu2-xS. Nano Energy. 85(7), 105991.","chicago":"Zhang, Yu, Congcong Xing, Yu Liu, Maria Chiara Spadaro, Xiang Wang, Mengyao Li, Ke Xiao, et al. “Doping-Mediated Stabilization of Copper Vacancies to Promote Thermoelectric Properties of Cu2-XS.” <i>Nano Energy</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.nanoen.2021.105991\">https://doi.org/10.1016/j.nanoen.2021.105991</a>.","short":"Y. Zhang, C. Xing, Y. Liu, M.C. Spadaro, X. Wang, M. Li, K. Xiao, T. Zhang, P. Guardia, K.H. Lim, A.O. Moghaddam, J. Llorca, J. Arbiol, M. Ibáñez, A. Cabot, Nano Energy 85 (2021).","ieee":"Y. Zhang <i>et al.</i>, “Doping-mediated stabilization of copper vacancies to promote thermoelectric properties of Cu2-xS,” <i>Nano Energy</i>, vol. 85, no. 7. Elsevier, 2021.","ama":"Zhang Y, Xing C, Liu Y, et al. Doping-mediated stabilization of copper vacancies to promote thermoelectric properties of Cu2-xS. <i>Nano Energy</i>. 2021;85(7). doi:<a href=\"https://doi.org/10.1016/j.nanoen.2021.105991\">10.1016/j.nanoen.2021.105991</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"language":[{"iso":"eng"}],"volume":85,"article_type":"original","date_created":"2021-04-04T22:01:21Z","author":[{"last_name":"Zhang","full_name":"Zhang, Yu","first_name":"Yu"},{"first_name":"Congcong","last_name":"Xing","full_name":"Xing, Congcong"},{"last_name":"Liu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","full_name":"Liu, Yu","first_name":"Yu","orcid":"0000-0001-7313-6740"},{"first_name":"Maria Chiara","last_name":"Spadaro","full_name":"Spadaro, Maria Chiara"},{"full_name":"Wang, Xiang","last_name":"Wang","first_name":"Xiang"},{"first_name":"Mengyao","full_name":"Li, Mengyao","last_name":"Li"},{"last_name":"Xiao","full_name":"Xiao, Ke","first_name":"Ke"},{"first_name":"Ting","last_name":"Zhang","full_name":"Zhang, Ting"},{"last_name":"Guardia","full_name":"Guardia, Pablo","first_name":"Pablo"},{"first_name":"Khak Ho","last_name":"Lim","full_name":"Lim, Khak Ho"},{"first_name":"Ahmad Ostovari","full_name":"Moghaddam, Ahmad Ostovari","last_name":"Moghaddam"},{"first_name":"Jordi","full_name":"Llorca, Jordi","last_name":"Llorca"},{"first_name":"Jordi","full_name":"Arbiol, Jordi","last_name":"Arbiol"},{"first_name":"Maria","orcid":"0000-0001-5013-2843","last_name":"Ibáñez","id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria"},{"first_name":"Andreu","full_name":"Cabot, Andreu","last_name":"Cabot"}],"scopus_import":"1","day":"01","title":"Doping-mediated stabilization of copper vacancies to promote thermoelectric properties of Cu2-xS","oa_version":"Submitted Version","publication_identifier":{"issn":["2211-2855"]},"publication_status":"published","intvolume":"        85","abstract":[{"lang":"eng","text":"Copper chalcogenides are outstanding thermoelectric materials for applications in the medium-high temperature range. Among different chalcogenides, while Cu2−xSe is characterized by higher thermoelectric figures of merit, Cu2−xS provides advantages in terms of low cost and element abundance. In the present work, we investigate the effect of different dopants to enhance the Cu2−xS performance and also its thermal stability. Among the tested options, Pb-doped Cu2−xS shows the highest improvement in stability against sulfur volatilization. Additionally, Pb incorporation allows tuning charge carrier concentration, which enables a significant improvement of the power factor. We demonstrate here that the introduction of an optimal additive amount of just 0.3% results in a threefold increase of the power factor in the middle-temperature range (500–800 K) and a record dimensionless thermoelectric figure of merit above 2 at 880 K."}]},{"type":"journal_article","date_updated":"2023-08-07T14:32:28Z","_id":"9306","publisher":"Rockefeller University Press","doi":"10.1083/jcb.202003052","article_processing_charge":"No","quality_controlled":"1","ddc":["576"],"external_id":{"pmid":["33740033"],"isi":["000663160600002"]},"year":"2021","isi":1,"date_published":"2021-03-19T00:00:00Z","acknowledgement":"This work was supported by European Research Council grant 281971, Wellcome Trust Research Career Development Fellowship WT095829AIA and Wellcome Trust Senior Research\r\nFellowship 219482/Z/19/Z to J.L. Gallop, a Wellcome Trust Senior Investigator Award 098357 to B.D. Simons, and an Austrian Science Fund grant (P31639) to E. Hannezo. We acknowledge\r\ncore funding by the Wellcome Trust (092096) and Cancer Research UK (C6946/A14492). U. Dobramysl was supported by a Wellcome Trust Junior Interdisciplinary Fellowship grant\r\n(105602/Z/14/Z) and a Herchel Smith Postdoctoral Fellowship. H. Shimo was supported by a Funai Foundation Overseas scholarship.","pmid":1,"project":[{"_id":"268294B6-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Active mechano-chemical description of the cell cytoskeleton","grant_number":"P31639"}],"publication":"Journal of Cell Biology","status":"public","article_type":"original","date_created":"2021-04-04T22:01:21Z","volume":220,"oa_version":"Published Version","title":"Stochastic combinations of actin regulatory proteins are sufficient to drive filopodia formation","author":[{"first_name":"Ulrich","full_name":"Dobramysl, Ulrich","last_name":"Dobramysl"},{"first_name":"Iris Katharina","last_name":"Jarsch","full_name":"Jarsch, Iris Katharina"},{"last_name":"Inoue","full_name":"Inoue, Yoshiko","first_name":"Yoshiko"},{"full_name":"Shimo, Hanae","last_name":"Shimo","first_name":"Hanae"},{"first_name":"Benjamin","full_name":"Richier, Benjamin","last_name":"Richier"},{"first_name":"Jonathan R.","full_name":"Gadsby, Jonathan R.","last_name":"Gadsby"},{"full_name":"Mason, Julia","last_name":"Mason","first_name":"Julia"},{"last_name":"Szałapak","full_name":"Szałapak, Alicja","first_name":"Alicja"},{"full_name":"Ioannou, Pantelis Savvas","last_name":"Ioannou","first_name":"Pantelis Savvas"},{"first_name":"Guilherme Pereira","last_name":"Correia","full_name":"Correia, Guilherme Pereira"},{"full_name":"Walrant, Astrid","last_name":"Walrant","first_name":"Astrid"},{"first_name":"Richard","full_name":"Butler, Richard","last_name":"Butler"},{"id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","full_name":"Hannezo, Edouard B","last_name":"Hannezo","first_name":"Edouard B","orcid":"0000-0001-6005-1561"},{"first_name":"Benjamin D.","full_name":"Simons, Benjamin D.","last_name":"Simons"},{"last_name":"Gallop","full_name":"Gallop, Jennifer L.","first_name":"Jennifer L."}],"day":"19","scopus_import":"1","publication_identifier":{"eissn":["15408140"]},"publication_status":"published","file_date_updated":"2021-04-06T10:39:08Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"intvolume":"       220","abstract":[{"lang":"eng","text":"Assemblies of actin and its regulators underlie the dynamic morphology of all eukaryotic cells. To understand how actin regulatory proteins work together to generate actin-rich structures such as filopodia, we analyzed the localization of diverse actin regulators within filopodia in Drosophila embryos and in a complementary in vitro system of filopodia-like structures (FLSs). We found that the composition of the regulatory protein complex where actin is incorporated (the filopodial tip complex) is remarkably heterogeneous both in vivo and in vitro. Our data reveal that different pairs of proteins correlate with each other and with actin bundle length, suggesting the presence of functional subcomplexes. This is consistent with a theoretical framework where three or more redundant subcomplexes join the tip complex stochastically, with any two being sufficient to drive filopodia formation. We provide an explanation for the observed heterogeneity and suggest that a mechanism based on multiple components allows stereotypical filopodial dynamics to arise from diverse upstream signaling pathways."}],"has_accepted_license":"1","file":[{"date_updated":"2021-04-06T10:39:08Z","creator":"dernst","file_size":9019720,"date_created":"2021-04-06T10:39:08Z","file_id":"9310","content_type":"application/pdf","access_level":"open_access","file_name":"2021_JCB_Dobramysl.pdf","success":1,"checksum":"4739ffd90f2c7e05ac5b00f057c58aa2","relation":"main_file"}],"article_number":"e202003052","department":[{"_id":"EdHa"}],"month":"03","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","issue":"4","citation":{"chicago":"Dobramysl, Ulrich, Iris Katharina Jarsch, Yoshiko Inoue, Hanae Shimo, Benjamin Richier, Jonathan R. Gadsby, Julia Mason, et al. “Stochastic Combinations of Actin Regulatory Proteins Are Sufficient to Drive Filopodia Formation.” <i>Journal of Cell Biology</i>. Rockefeller University Press, 2021. <a href=\"https://doi.org/10.1083/jcb.202003052\">https://doi.org/10.1083/jcb.202003052</a>.","ista":"Dobramysl U, Jarsch IK, Inoue Y, Shimo H, Richier B, Gadsby JR, Mason J, Szałapak A, Ioannou PS, Correia GP, Walrant A, Butler R, Hannezo EB, Simons BD, Gallop JL. 2021. Stochastic combinations of actin regulatory proteins are sufficient to drive filopodia formation. Journal of Cell Biology. 220(4), e202003052.","mla":"Dobramysl, Ulrich, et al. “Stochastic Combinations of Actin Regulatory Proteins Are Sufficient to Drive Filopodia Formation.” <i>Journal of Cell Biology</i>, vol. 220, no. 4, e202003052, Rockefeller University Press, 2021, doi:<a href=\"https://doi.org/10.1083/jcb.202003052\">10.1083/jcb.202003052</a>.","apa":"Dobramysl, U., Jarsch, I. K., Inoue, Y., Shimo, H., Richier, B., Gadsby, J. R., … Gallop, J. L. (2021). Stochastic combinations of actin regulatory proteins are sufficient to drive filopodia formation. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href=\"https://doi.org/10.1083/jcb.202003052\">https://doi.org/10.1083/jcb.202003052</a>","ama":"Dobramysl U, Jarsch IK, Inoue Y, et al. Stochastic combinations of actin regulatory proteins are sufficient to drive filopodia formation. <i>Journal of Cell Biology</i>. 2021;220(4). doi:<a href=\"https://doi.org/10.1083/jcb.202003052\">10.1083/jcb.202003052</a>","short":"U. Dobramysl, I.K. Jarsch, Y. Inoue, H. Shimo, B. Richier, J.R. Gadsby, J. Mason, A. Szałapak, P.S. Ioannou, G.P. Correia, A. Walrant, R. Butler, E.B. Hannezo, B.D. Simons, J.L. Gallop, Journal of Cell Biology 220 (2021).","ieee":"U. Dobramysl <i>et al.</i>, “Stochastic combinations of actin regulatory proteins are sufficient to drive filopodia formation,” <i>Journal of Cell Biology</i>, vol. 220, no. 4. Rockefeller University Press, 2021."},"language":[{"iso":"eng"}],"oa":1},{"oa":1,"language":[{"iso":"eng"}],"citation":{"short":"S. Hensel, Stochastics and Partial Differential Equations: Analysis and Computations 9 (2021) 892–939.","ieee":"S. Hensel, “Finite time extinction for the 1D stochastic porous medium equation with transport noise,” <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>, vol. 9. Springer Nature, pp. 892–939, 2021.","ama":"Hensel S. Finite time extinction for the 1D stochastic porous medium equation with transport noise. <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>. 2021;9:892–939. doi:<a href=\"https://doi.org/10.1007/s40072-021-00188-9\">10.1007/s40072-021-00188-9</a>","mla":"Hensel, Sebastian. “Finite Time Extinction for the 1D Stochastic Porous Medium Equation with Transport Noise.” <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>, vol. 9, Springer Nature, 2021, pp. 892–939, doi:<a href=\"https://doi.org/10.1007/s40072-021-00188-9\">10.1007/s40072-021-00188-9</a>.","apa":"Hensel, S. (2021). Finite time extinction for the 1D stochastic porous medium equation with transport noise. <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s40072-021-00188-9\">https://doi.org/10.1007/s40072-021-00188-9</a>","chicago":"Hensel, Sebastian. “Finite Time Extinction for the 1D Stochastic Porous Medium Equation with Transport Noise.” <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/s40072-021-00188-9\">https://doi.org/10.1007/s40072-021-00188-9</a>.","ista":"Hensel S. 2021. Finite time extinction for the 1D stochastic porous medium equation with transport noise. Stochastics and Partial Differential Equations: Analysis and Computations. 9, 892–939."},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"03","department":[{"_id":"JuFi"}],"file":[{"checksum":"6529b609c9209861720ffa4685111bc6","relation":"main_file","content_type":"application/pdf","access_level":"open_access","file_name":"2021_StochPartDiffEquation_Hensel.pdf","success":1,"file_id":"9309","creator":"dernst","date_updated":"2021-04-06T09:31:28Z","date_created":"2021-04-06T09:31:28Z","file_size":727005}],"has_accepted_license":"1","intvolume":"         9","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"text":"We establish finite time extinction with probability one for weak solutions of the Cauchy–Dirichlet problem for the 1D stochastic porous medium equation with Stratonovich transport noise and compactly supported smooth initial datum. Heuristically, this is expected to hold because Brownian motion has average spread rate O(t12) whereas the support of solutions to the deterministic PME grows only with rate O(t1m+1). The rigorous proof relies on a contraction principle up to time-dependent shift for Wong–Zakai type approximations, the transformation to a deterministic PME with two copies of a Brownian path as the lateral boundary, and techniques from the theory of viscosity solutions.","lang":"eng"}],"publication_identifier":{"eissn":["2194-041X"],"issn":["2194-0401"]},"publication_status":"published","file_date_updated":"2021-04-06T09:31:28Z","author":[{"id":"4D23B7DA-F248-11E8-B48F-1D18A9856A87","full_name":"Hensel, Sebastian","last_name":"Hensel","first_name":"Sebastian","orcid":"0000-0001-7252-8072"}],"scopus_import":"1","day":"21","title":"Finite time extinction for the 1D stochastic porous medium equation with transport noise","oa_version":"Published Version","volume":9,"article_type":"original","date_created":"2021-04-04T22:01:21Z","project":[{"name":"International IST Doctoral Program","grant_number":"665385","call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"}],"publication":"Stochastics and Partial Differential Equations: Analysis and Computations","status":"public","ec_funded":1,"acknowledgement":"This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385 . I am very grateful to M. Gerencsér and J. Maas for proposing this problem as well as helpful discussions. Special thanks go to F. Cornalba for suggesting the additional κ-truncation in Proposition 5. I am also indebted to an anonymous referee for pointing out a gap in a previous version of the proof of Lemma 9 (concerning the treatment of the noise term). The issue is resolved in this version.","date_published":"2021-03-21T00:00:00Z","year":"2021","isi":1,"external_id":{"isi":["000631001700001"]},"page":"892–939","ddc":["510"],"quality_controlled":"1","doi":"10.1007/s40072-021-00188-9","article_processing_charge":"Yes (via OA deal)","publisher":"Springer Nature","date_updated":"2023-08-07T14:31:59Z","_id":"9307","type":"journal_article"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ama":"Iyiola OS, Shehu Y. New convergence results for inertial Krasnoselskii–Mann iterations in Hilbert spaces with applications. <i>Results in Mathematics</i>. 2021;76(2). doi:<a href=\"https://doi.org/10.1007/s00025-021-01381-x\">10.1007/s00025-021-01381-x</a>","short":"O.S. Iyiola, Y. Shehu, Results in Mathematics 76 (2021).","ieee":"O. S. Iyiola and Y. Shehu, “New convergence results for inertial Krasnoselskii–Mann iterations in Hilbert spaces with applications,” <i>Results in Mathematics</i>, vol. 76, no. 2. Springer Nature, 2021.","ista":"Iyiola OS, Shehu Y. 2021. New convergence results for inertial Krasnoselskii–Mann iterations in Hilbert spaces with applications. Results in Mathematics. 76(2), 75.","chicago":"Iyiola, Olaniyi S., and Yekini Shehu. “New Convergence Results for Inertial Krasnoselskii–Mann Iterations in Hilbert Spaces with Applications.” <i>Results in Mathematics</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/s00025-021-01381-x\">https://doi.org/10.1007/s00025-021-01381-x</a>.","mla":"Iyiola, Olaniyi S., and Yekini Shehu. “New Convergence Results for Inertial Krasnoselskii–Mann Iterations in Hilbert Spaces with Applications.” <i>Results in Mathematics</i>, vol. 76, no. 2, 75, Springer Nature, 2021, doi:<a href=\"https://doi.org/10.1007/s00025-021-01381-x\">10.1007/s00025-021-01381-x</a>.","apa":"Iyiola, O. S., &#38; Shehu, Y. (2021). New convergence results for inertial Krasnoselskii–Mann iterations in Hilbert spaces with applications. <i>Results in Mathematics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00025-021-01381-x\">https://doi.org/10.1007/s00025-021-01381-x</a>"},"issue":"2","language":[{"iso":"eng"}],"article_number":"75","department":[{"_id":"VlKo"}],"month":"03","publication_identifier":{"issn":["1422-6383"],"eissn":["1420-9012"]},"publication_status":"published","abstract":[{"text":"We consider inertial iteration methods for Fermat–Weber location problem and primal–dual three-operator splitting in real Hilbert spaces. To do these, we first obtain weak convergence analysis and nonasymptotic O(1/n) convergence rate of the inertial Krasnoselskii–Mann iteration for fixed point of nonexpansive operators in infinite dimensional real Hilbert spaces under some seemingly easy to implement conditions on the iterative parameters. One of our contributions is that the convergence analysis and rate of convergence results are obtained using conditions which appear not complicated and restrictive as assumed in other previous related results in the literature. We then show that Fermat–Weber location problem and primal–dual three-operator splitting are special cases of fixed point problem of nonexpansive mapping and consequently obtain the convergence analysis of inertial iteration methods for Fermat–Weber location problem and primal–dual three-operator splitting in real Hilbert spaces. Some numerical implementations are drawn from primal–dual three-operator splitting to support the theoretical analysis.","lang":"eng"}],"intvolume":"        76","date_created":"2021-04-11T22:01:14Z","article_type":"original","volume":76,"oa_version":"None","title":"New convergence results for inertial Krasnoselskii–Mann iterations in Hilbert spaces with applications","scopus_import":"1","day":"25","author":[{"first_name":"Olaniyi S.","last_name":"Iyiola","full_name":"Iyiola, Olaniyi S."},{"first_name":"Yekini","orcid":"0000-0001-9224-7139","last_name":"Shehu","id":"3FC7CB58-F248-11E8-B48F-1D18A9856A87","full_name":"Shehu, Yekini"}],"acknowledgement":"The research of this author is supported by the Postdoctoral Fellowship from Institute of Science and Technology (IST), Austria.","date_published":"2021-03-25T00:00:00Z","publication":"Results in Mathematics","status":"public","external_id":{"isi":["000632917700001"]},"isi":1,"year":"2021","quality_controlled":"1","type":"journal_article","_id":"9315","date_updated":"2023-10-10T09:47:33Z","publisher":"Springer Nature","article_processing_charge":"No","doi":"10.1007/s00025-021-01381-x"},{"related_material":{"link":[{"relation":"press_release","url":"https://ist.ac.at/en/news/embryonic-tissue-undergoes-phase-transition/","description":"News on IST Homepage"}]},"external_id":{"pmid":["33730596"],"isi":["000636734000022"]},"year":"2021","isi":1,"acknowledgement":"We thank Carl Goodrich and the members of the Heisenberg and Hannezo groups, in particular Reka Korei, for help, technical advice, and discussions; and the Bioimaging and zebrafish facilities of the IST Austria for continuous support. This work was supported by the Elise Richter Program of Austrian Science Fund (FWF) to N.I.P. ( V 736-B26 ) and the European Union (European Research Council Advanced Grant 742573 to C.-P.H. and European Research Council Starting Grant 851288 to E.H.).","date_published":"2021-04-01T00:00:00Z","ec_funded":1,"pmid":1,"publication":"Cell","status":"public","project":[{"_id":"260F1432-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"742573","name":"Interaction and feedback between cell mechanics and fate specification in vertebrate gastrulation"},{"name":"Design Principles of Branching Morphogenesis","grant_number":"851288","call_identifier":"H2020","_id":"05943252-7A3F-11EA-A408-12923DDC885E"},{"call_identifier":"FWF","grant_number":"V00736","name":"Tissue material properties in embryonic development","_id":"2693FD8C-B435-11E9-9278-68D0E5697425"}],"type":"journal_article","_id":"9316","date_updated":"2023-08-07T14:33:59Z","publisher":"Elsevier","article_processing_charge":"No","doi":"10.1016/j.cell.2021.02.017","quality_controlled":"1","ddc":["570"],"page":"1914-1928.e19","file":[{"file_id":"9534","date_updated":"2021-06-08T10:04:10Z","creator":"cziletti","date_created":"2021-06-08T10:04:10Z","file_size":11405875,"checksum":"1e5295fbd9c2a459173ec45a0e8a7c2e","relation":"main_file","access_level":"open_access","content_type":"application/pdf","success":1,"file_name":"2021_Cell_Petridou.pdf"}],"department":[{"_id":"CaHe"},{"_id":"EdHa"}],"month":"04","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"ama":"Petridou N, Corominas-Murtra B, Heisenberg C-PJ, Hannezo EB. Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions. <i>Cell</i>. 2021;184(7):1914-1928.e19. doi:<a href=\"https://doi.org/10.1016/j.cell.2021.02.017\">10.1016/j.cell.2021.02.017</a>","short":"N. Petridou, B. Corominas-Murtra, C.-P.J. Heisenberg, E.B. Hannezo, Cell 184 (2021) 1914–1928.e19.","ieee":"N. Petridou, B. Corominas-Murtra, C.-P. J. Heisenberg, and E. B. Hannezo, “Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions,” <i>Cell</i>, vol. 184, no. 7. Elsevier, p. 1914–1928.e19, 2021.","chicago":"Petridou, Nicoletta, Bernat Corominas-Murtra, Carl-Philipp J Heisenberg, and Edouard B Hannezo. “Rigidity Percolation Uncovers a Structural Basis for Embryonic Tissue Phase Transitions.” <i>Cell</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.cell.2021.02.017\">https://doi.org/10.1016/j.cell.2021.02.017</a>.","ista":"Petridou N, Corominas-Murtra B, Heisenberg C-PJ, Hannezo EB. 2021. Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions. Cell. 184(7), 1914–1928.e19.","mla":"Petridou, Nicoletta, et al. “Rigidity Percolation Uncovers a Structural Basis for Embryonic Tissue Phase Transitions.” <i>Cell</i>, vol. 184, no. 7, Elsevier, 2021, p. 1914–1928.e19, doi:<a href=\"https://doi.org/10.1016/j.cell.2021.02.017\">10.1016/j.cell.2021.02.017</a>.","apa":"Petridou, N., Corominas-Murtra, B., Heisenberg, C.-P. J., &#38; Hannezo, E. B. (2021). Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions. <i>Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cell.2021.02.017\">https://doi.org/10.1016/j.cell.2021.02.017</a>"},"issue":"7","language":[{"iso":"eng"}],"oa":1,"date_created":"2021-04-11T22:01:14Z","article_type":"original","volume":184,"oa_version":"Published Version","title":"Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions","day":"01","scopus_import":"1","author":[{"first_name":"Nicoletta","orcid":"0000-0002-8451-1195","id":"2A003F6C-F248-11E8-B48F-1D18A9856A87","full_name":"Petridou, Nicoletta","last_name":"Petridou"},{"id":"43BE2298-F248-11E8-B48F-1D18A9856A87","full_name":"Corominas-Murtra, Bernat","last_name":"Corominas-Murtra","orcid":"0000-0001-9806-5643","first_name":"Bernat"},{"orcid":"0000-0002-0912-4566","first_name":"Carl-Philipp J","full_name":"Heisenberg, Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","last_name":"Heisenberg"},{"id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","full_name":"Hannezo, Edouard B","last_name":"Hannezo","first_name":"Edouard B","orcid":"0000-0001-6005-1561"}],"file_date_updated":"2021-06-08T10:04:10Z","publication_identifier":{"issn":["00928674"],"eissn":["10974172"]},"publication_status":"published","acknowledged_ssus":[{"_id":"Bio"},{"_id":"PreCl"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"intvolume":"       184","abstract":[{"lang":"eng","text":"Embryo morphogenesis is impacted by dynamic changes in tissue material properties, which have been proposed to occur via processes akin to phase transitions (PTs). Here, we show that rigidity percolation provides a simple and robust theoretical framework to predict material/structural PTs of embryonic tissues from local cell connectivity. By using percolation theory, combined with directly monitoring dynamic changes in tissue rheology and cell contact mechanics, we demonstrate that the zebrafish blastoderm undergoes a genuine rigidity PT, brought about by a small reduction in adhesion-dependent cell connectivity below a critical value. We quantitatively predict and experimentally verify hallmarks of PTs, including power-law exponents and associated discontinuities of macroscopic observables. Finally, we show that this uniform PT depends on blastoderm cells undergoing meta-synchronous divisions causing random and, consequently, uniform changes in cell connectivity. Collectively, our theoretical and experimental findings reveal the structural basis of material PTs in an organismal context."}],"has_accepted_license":"1"},{"language":[{"iso":"eng"}],"oa":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"ieee":"H. Edelsbrunner and G. F. Osang, “The multi-cover persistence of Euclidean balls,” <i>Discrete and Computational Geometry</i>, vol. 65. Springer Nature, pp. 1296–1313, 2021.","short":"H. Edelsbrunner, G.F. Osang, Discrete and Computational Geometry 65 (2021) 1296–1313.","ama":"Edelsbrunner H, Osang GF. The multi-cover persistence of Euclidean balls. <i>Discrete and Computational Geometry</i>. 2021;65:1296–1313. doi:<a href=\"https://doi.org/10.1007/s00454-021-00281-9\">10.1007/s00454-021-00281-9</a>","apa":"Edelsbrunner, H., &#38; Osang, G. F. (2021). The multi-cover persistence of Euclidean balls. <i>Discrete and Computational Geometry</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00454-021-00281-9\">https://doi.org/10.1007/s00454-021-00281-9</a>","mla":"Edelsbrunner, Herbert, and Georg F. Osang. “The Multi-Cover Persistence of Euclidean Balls.” <i>Discrete and Computational Geometry</i>, vol. 65, Springer Nature, 2021, pp. 1296–1313, doi:<a href=\"https://doi.org/10.1007/s00454-021-00281-9\">10.1007/s00454-021-00281-9</a>.","chicago":"Edelsbrunner, Herbert, and Georg F Osang. “The Multi-Cover Persistence of Euclidean Balls.” <i>Discrete and Computational Geometry</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/s00454-021-00281-9\">https://doi.org/10.1007/s00454-021-00281-9</a>.","ista":"Edelsbrunner H, Osang GF. 2021. The multi-cover persistence of Euclidean balls. Discrete and Computational Geometry. 65, 1296–1313."},"month":"03","file":[{"success":1,"file_name":"2021_DisCompGeo_Edelsbrunner_Osang.pdf","access_level":"open_access","content_type":"application/pdf","relation":"main_file","checksum":"59b4e1e827e494209bcb4aae22e1d347","file_size":677704,"date_created":"2021-12-01T10:56:53Z","creator":"cchlebak","date_updated":"2021-12-01T10:56:53Z","file_id":"10394"}],"department":[{"_id":"HeEd"}],"intvolume":"        65","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"Given a locally finite X⊆Rd and a radius r≥0, the k-fold cover of X and r consists of all points in Rd that have k or more points of X within distance r. We consider two filtrations—one in scale obtained by fixing k and increasing r, and the other in depth obtained by fixing r and decreasing k—and we compute the persistence diagrams of both. While standard methods suffice for the filtration in scale, we need novel geometric and topological concepts for the filtration in depth. In particular, we introduce a rhomboid tiling in Rd+1 whose horizontal integer slices are the order-k Delaunay mosaics of X, and construct a zigzag module of Delaunay mosaics that is isomorphic to the persistence module of the multi-covers."}],"has_accepted_license":"1","file_date_updated":"2021-12-01T10:56:53Z","publication_identifier":{"eissn":["1432-0444"],"issn":["0179-5376"]},"publication_status":"published","title":"The multi-cover persistence of Euclidean balls","oa_version":"Published Version","scopus_import":"1","day":"31","author":[{"last_name":"Edelsbrunner","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","full_name":"Edelsbrunner, Herbert","orcid":"0000-0002-9823-6833","first_name":"Herbert"},{"last_name":"Osang","full_name":"Osang, Georg F","id":"464B40D6-F248-11E8-B48F-1D18A9856A87","first_name":"Georg F"}],"date_created":"2021-04-11T22:01:15Z","article_type":"original","volume":65,"publication":"Discrete and Computational Geometry","status":"public","project":[{"call_identifier":"H2020","grant_number":"788183","name":"Alpha Shape Theory Extended","_id":"266A2E9E-B435-11E9-9278-68D0E5697425"},{"name":"Persistence and stability of geometric complexes","grant_number":"I02979-N35","call_identifier":"FWF","_id":"2561EBF4-B435-11E9-9278-68D0E5697425"}],"date_published":"2021-03-31T00:00:00Z","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 78818 Alpha), and by the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, through Grant No. I02979-N35 of the Austrian Science Fund (FWF)\r\nOpen Access funding provided by the Institute of Science and Technology (IST Austria).","ec_funded":1,"related_material":{"record":[{"id":"187","relation":"earlier_version","status":"public"}]},"external_id":{"isi":["000635460400001"]},"isi":1,"year":"2021","ddc":["516"],"page":"1296–1313","quality_controlled":"1","publisher":"Springer Nature","article_processing_charge":"Yes (via OA deal)","doi":"10.1007/s00454-021-00281-9","type":"journal_article","_id":"9317","date_updated":"2023-08-07T14:35:44Z"}]