[{"issue":"2","abstract":[{"text":"We continue our study of ‘no‐dimension’ analogues of basic theorems in combinatorial and convex geometry in Banach spaces. We generalize some results of the paper (Adiprasito, Bárány and Mustafa, ‘Theorems of Carathéodory, Helly, and Tverberg without dimension’, Proceedings of the Thirtieth Annual ACM‐SIAM Symposium on Discrete Algorithms (Society for Industrial and Applied Mathematics, San Diego, California, 2019) 2350–2360) and prove no‐dimension versions of the colored Tverberg theorem, the selection lemma and the weak 𝜀 ‐net theorem in Banach spaces of type 𝑝>1 . To prove these results, we use the original ideas of Adiprasito, Bárány and Mustafa for the Euclidean case, our no‐dimension version of the Radon theorem and slightly modified version of the celebrated Maurey lemma.","lang":"eng"}],"doi":"10.1112/blms.12449","author":[{"full_name":"Ivanov, Grigory","last_name":"Ivanov","id":"87744F66-5C6F-11EA-AFE0-D16B3DDC885E","first_name":"Grigory"}],"title":"No-dimension Tverberg's theorem and its corollaries in Banach spaces of type p","_id":"9037","status":"public","acknowledgement":"I wish to thank Imre Bárány for bringing the problem to my attention. I am grateful to Marton Naszódi and Igor Tsiutsiurupa for useful remarks and help with the text.\r\nThe author acknowledges the financial support from the Ministry of Educational and Science of the Russian Federation in the framework of MegaGrant no 075‐15‐2019‐1926.","publication_status":"published","publication_identifier":{"issn":["00246093"],"eissn":["14692120"]},"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","oa_version":"Published Version","day":"01","citation":{"apa":"Ivanov, G. (2021). No-dimension Tverberg’s theorem and its corollaries in Banach spaces of type p. Bulletin of the London Mathematical Society. London Mathematical Society. https://doi.org/10.1112/blms.12449","ieee":"G. Ivanov, “No-dimension Tverberg’s theorem and its corollaries in Banach spaces of type p,” Bulletin of the London Mathematical Society, vol. 53, no. 2. London Mathematical Society, pp. 631–641, 2021.","ista":"Ivanov G. 2021. No-dimension Tverberg’s theorem and its corollaries in Banach spaces of type p. Bulletin of the London Mathematical Society. 53(2), 631–641.","ama":"Ivanov G. No-dimension Tverberg’s theorem and its corollaries in Banach spaces of type p. Bulletin of the London Mathematical Society. 2021;53(2):631-641. doi:10.1112/blms.12449","short":"G. Ivanov, Bulletin of the London Mathematical Society 53 (2021) 631–641.","mla":"Ivanov, Grigory. “No-Dimension Tverberg’s Theorem and Its Corollaries in Banach Spaces of Type P.” Bulletin of the London Mathematical Society, vol. 53, no. 2, London Mathematical Society, 2021, pp. 631–41, doi:10.1112/blms.12449.","chicago":"Ivanov, Grigory. “No-Dimension Tverberg’s Theorem and Its Corollaries in Banach Spaces of Type P.” Bulletin of the London Mathematical Society. London Mathematical Society, 2021. https://doi.org/10.1112/blms.12449."},"month":"04","file_date_updated":"2021-08-06T09:59:45Z","ddc":["510"],"has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","volume":53,"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"arxiv":1,"file":[{"date_created":"2021-08-06T09:59:45Z","file_id":"9796","file_size":194550,"creator":"kschuh","relation":"main_file","file_name":"2021_BLMS_Ivanov.pdf","content_type":"application/pdf","checksum":"e6ceaa6470d835eb4c211cbdd38fdfd1","access_level":"open_access","date_updated":"2021-08-06T09:59:45Z","success":1}],"year":"2021","oa":1,"article_type":"original","page":"631-641","publication":"Bulletin of the London Mathematical Society","date_updated":"2023-08-07T13:35:20Z","date_published":"2021-04-01T00:00:00Z","external_id":{"isi":["000607265100001"],"arxiv":["1912.08561"]},"scopus_import":"1","date_created":"2021-01-24T23:01:08Z","department":[{"_id":"UlWa"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","isi":1,"quality_controlled":"1","language":[{"iso":"eng"}],"type":"journal_article","intvolume":" 53","publisher":"London Mathematical Society"},{"department":[{"_id":"NanoFab"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"pmid":["33430225"],"isi":["000610636600001"]},"date_published":"2021-01-07T00:00:00Z","scopus_import":"1","date_created":"2021-01-24T23:01:09Z","intvolume":" 11","publisher":"MDPI","isi":1,"type":"journal_article","language":[{"iso":"eng"}],"quality_controlled":"1","oa":1,"year":"2021","publication":"Nanomaterials","date_updated":"2023-08-07T13:35:50Z","article_type":"original","article_number":"120","day":"07","citation":{"ieee":"P. Aguilar-Merino et al., “Extracting the infrared permittivity of SiO2 substrates locally by near-field imaging of phonon polaritons in a van der Waals crystal,” Nanomaterials, vol. 11, no. 1. MDPI, 2021.","apa":"Aguilar-Merino, P., Álvarez-Pérez, G., Taboada-Gutiérrez, J., Duan, J., Prieto Gonzalez, I., Álvarez-Prado, L. M., … Alonso-González, P. (2021). Extracting the infrared permittivity of SiO2 substrates locally by near-field imaging of phonon polaritons in a van der Waals crystal. Nanomaterials. MDPI. https://doi.org/10.3390/nano11010120","ama":"Aguilar-Merino P, Álvarez-Pérez G, Taboada-Gutiérrez J, et al. Extracting the infrared permittivity of SiO2 substrates locally by near-field imaging of phonon polaritons in a van der Waals crystal. Nanomaterials. 2021;11(1). doi:10.3390/nano11010120","ista":"Aguilar-Merino P, Álvarez-Pérez G, Taboada-Gutiérrez J, Duan J, Prieto Gonzalez I, Álvarez-Prado LM, Nikitin AY, Martín-Sánchez J, Alonso-González P. 2021. Extracting the infrared permittivity of SiO2 substrates locally by near-field imaging of phonon polaritons in a van der Waals crystal. Nanomaterials. 11(1), 120.","short":"P. Aguilar-Merino, G. Álvarez-Pérez, J. Taboada-Gutiérrez, J. Duan, I. Prieto Gonzalez, L.M. Álvarez-Prado, A.Y. Nikitin, J. Martín-Sánchez, P. Alonso-González, Nanomaterials 11 (2021).","mla":"Aguilar-Merino, Patricia, et al. “Extracting the Infrared Permittivity of SiO2 Substrates Locally by Near-Field Imaging of Phonon Polaritons in a van Der Waals Crystal.” Nanomaterials, vol. 11, no. 1, 120, MDPI, 2021, doi:10.3390/nano11010120.","chicago":"Aguilar-Merino, Patricia, Gonzalo Álvarez-Pérez, Javier Taboada-Gutiérrez, Jiahua Duan, Ivan Prieto Gonzalez, Luis Manuel Álvarez-Prado, Alexey Y. Nikitin, Javier Martín-Sánchez, and Pablo Alonso-González. “Extracting the Infrared Permittivity of SiO2 Substrates Locally by Near-Field Imaging of Phonon Polaritons in a van Der Waals Crystal.” Nanomaterials. MDPI, 2021. https://doi.org/10.3390/nano11010120."},"ddc":["620"],"month":"01","pmid":1,"file_date_updated":"2021-01-25T08:02:32Z","license":"https://creativecommons.org/licenses/by/4.0/","oa_version":"Published Version","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file":[{"relation":"main_file","file_size":2730267,"creator":"dernst","file_name":"2020_Nanomaterials_Aguilar_Merino.pdf","content_type":"application/pdf","checksum":"1edc13eeda83df5cd9fff9504727b1f5","access_level":"open_access","date_updated":"2021-01-25T08:02:32Z","success":1,"date_created":"2021-01-25T08:02:32Z","file_id":"9042"}],"has_accepted_license":"1","article_processing_charge":"No","volume":11,"author":[{"first_name":"Patricia","last_name":"Aguilar-Merino","full_name":"Aguilar-Merino, Patricia"},{"first_name":"Gonzalo","full_name":"Álvarez-Pérez, Gonzalo","last_name":"Álvarez-Pérez"},{"first_name":"Javier","full_name":"Taboada-Gutiérrez, Javier","last_name":"Taboada-Gutiérrez"},{"first_name":"Jiahua","last_name":"Duan","full_name":"Duan, Jiahua"},{"orcid":"0000-0002-7370-5357","id":"2A307FE2-F248-11E8-B48F-1D18A9856A87","first_name":"Ivan","full_name":"Prieto Gonzalez, Ivan","last_name":"Prieto Gonzalez"},{"last_name":"Álvarez-Prado","full_name":"Álvarez-Prado, Luis Manuel","first_name":"Luis Manuel"},{"full_name":"Nikitin, Alexey Y.","last_name":"Nikitin","first_name":"Alexey Y."},{"first_name":"Javier","last_name":"Martín-Sánchez","full_name":"Martín-Sánchez, Javier"},{"first_name":"Pablo","full_name":"Alonso-González, Pablo","last_name":"Alonso-González"}],"title":"Extracting the infrared permittivity of SiO2 substrates locally by near-field imaging of phonon polaritons in a van der Waals crystal","_id":"9038","issue":"1","abstract":[{"lang":"eng","text":"Layered materials in which individual atomic layers are bonded by weak van der Waals forces (vdW materials) constitute one of the most prominent platforms for materials research. Particularly, polar vdW crystals, such as hexagonal boron nitride (h-BN), alpha-molybdenum trioxide (α-MoO3) or alpha-vanadium pentoxide (α-V2O5), have received significant attention in nano-optics, since they support phonon polaritons (PhPs)―light coupled to lattice vibrations― with strong electromagnetic confinement and low optical losses. Recently, correlative far- and near-field studies of α-MoO3 have been demonstrated as an effective strategy to accurately extract the permittivity of this material. Here, we use this accurately characterized and low-loss polaritonic material to sense its local dielectric environment, namely silica (SiO2), one of the most widespread substrates in nanotechnology. By studying the propagation of PhPs on α-MoO3 flakes with different thicknesses laying on SiO2 substrates via near-field microscopy (s-SNOM), we extract locally the infrared permittivity of SiO2. Our work reveals PhPs nanoimaging as a versatile method for the quantitative characterization of the local optical properties of dielectric substrates, crucial for understanding and predicting the response of nanomaterials and for the future scalability of integrated nanophotonic devices. "}],"doi":"10.3390/nano11010120","publication_identifier":{"eissn":["20794991"]},"publication_status":"published","status":"public","acknowledgement":"P.A.-M. acknowledges financial support through JAE Intro program from the Superior\r\nCouncil of Scientific Investigations and the Spanish Ministry of Science and Innovation (grant number JAEINT_20_00589). G.Á.-P. and J.T.-G. acknowledge financial support through the Severo Ochoa Program from the Government of the Principality of Asturias (grant numbers PA-20-PF-BP19-053 and PA-18-PF-BP17-126, respectively). J.M.-S. acknowledges financial support from the Ramón y Cajal Program of the Government of Spain (RYC2018-026196-I) and the Spanish Ministry of Science and Innovation (State Plan for Scientific and Technical Research and Innovation grant number PID2019-110308GA-I00). P.A.-G. acknowledges support from the European Research Council under starting grant no. 715496, 2DNANOPTICA and the Spanish Ministry of Science and Innovation (State Plan for Scientific and Technical Research and Innovation grant number PID2019-111156GB-I00)."},{"language":[{"iso":"eng"}],"quality_controlled":"1","type":"journal_article","isi":1,"publisher":"Public Library of Science","intvolume":" 17","date_created":"2021-01-31T23:01:21Z","scopus_import":"1","external_id":{"isi":["000610190400007"],"pmid":["33444399"]},"date_published":"2021-01-14T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"CaGu"}],"article_number":"e1009172","article_type":"original","date_updated":"2023-08-07T13:36:55Z","publication":"PLoS Pathogens","year":"2021","oa":1,"volume":17,"article_processing_charge":"No","has_accepted_license":"1","file":[{"success":1,"date_updated":"2021-02-03T12:13:03Z","access_level":"open_access","checksum":"d745d7f8fcbb9b95fea16a36f94dee31","content_type":"application/pdf","file_name":"2021_PlosPathogens_Roemhild.pdf","relation":"main_file","file_size":570066,"creator":"dernst","file_id":"9070","date_created":"2021-02-03T12:13:03Z"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa_version":"Published Version","ddc":["570"],"month":"01","file_date_updated":"2021-02-03T12:13:03Z","pmid":1,"citation":{"chicago":"Römhild, Roderich, and Dan I. Andersson. “Mechanisms and Therapeutic Potential of Collateral Sensitivity to Antibiotics.” PLoS Pathogens. Public Library of Science, 2021. https://doi.org/10.1371/journal.ppat.1009172.","mla":"Römhild, Roderich, and Dan I. Andersson. “Mechanisms and Therapeutic Potential of Collateral Sensitivity to Antibiotics.” PLoS Pathogens, vol. 17, no. 1, e1009172, Public Library of Science, 2021, doi:10.1371/journal.ppat.1009172.","apa":"Römhild, R., & Andersson, D. I. (2021). Mechanisms and therapeutic potential of collateral sensitivity to antibiotics. PLoS Pathogens. Public Library of Science. https://doi.org/10.1371/journal.ppat.1009172","ieee":"R. Römhild and D. I. Andersson, “Mechanisms and therapeutic potential of collateral sensitivity to antibiotics,” PLoS Pathogens, vol. 17, no. 1. Public Library of Science, 2021.","ama":"Römhild R, Andersson DI. Mechanisms and therapeutic potential of collateral sensitivity to antibiotics. PLoS Pathogens. 2021;17(1). doi:10.1371/journal.ppat.1009172","short":"R. Römhild, D.I. Andersson, PLoS Pathogens 17 (2021).","ista":"Römhild R, Andersson DI. 2021. Mechanisms and therapeutic potential of collateral sensitivity to antibiotics. PLoS Pathogens. 17(1), e1009172."},"day":"14","acknowledgement":"Our work was supported by the Swedish Research Council (grant 2017-01527) to DIA","publication_status":"published","status":"public","publication_identifier":{"issn":["15537366"],"eissn":["15537374"]},"doi":"10.1371/journal.ppat.1009172","issue":"1","_id":"9046","title":"Mechanisms and therapeutic potential of collateral sensitivity to antibiotics","author":[{"last_name":"Römhild","full_name":"Römhild, Roderich","first_name":"Roderich","id":"68E56E44-62B0-11EA-B963-444F3DDC885E","orcid":"0000-0001-9480-5261"},{"last_name":"Andersson","full_name":"Andersson, Dan I.","first_name":"Dan I."}]},{"publication_status":"published","acknowledgement":"M. Mondelli was partially supported by grants NSF DMS-1613091, CCF-1714305, IIS-1741162, and ONR N00014-18-1-2729. S. A. Hashemi is supported by a Postdoctoral Fellowship from the Natural Sciences and Engineering Research Council of Canada (NSERC) and by Huawei. The authors would like to thank the anonymous reviewers for their comments that helped improving the quality of the manuscript.","status":"public","publication_identifier":{"eissn":["15582248"],"issn":["15361276"]},"doi":"10.1109/TWC.2020.3022922","issue":"1","abstract":[{"lang":"eng","text":"This work analyzes the latency of the simplified successive cancellation (SSC) decoding scheme for polar codes proposed by Alamdar-Yazdi and Kschischang. It is shown that, unlike conventional successive cancellation decoding, where latency is linear in the block length, the latency of SSC decoding is sublinear. More specifically, the latency of SSC decoding is O(N1−1/μ) , where N is the block length and μ is the scaling exponent of the channel, which captures the speed of convergence of the rate to capacity. Numerical results demonstrate the tightness of the bound and show that most of the latency reduction arises from the parallel decoding of subcodes of rate 0 or 1."}],"_id":"9047","author":[{"last_name":"Mondelli","full_name":"Mondelli, Marco","first_name":"Marco","id":"27EB676C-8706-11E9-9510-7717E6697425","orcid":"0000-0002-3242-7020"},{"last_name":"Hashemi","full_name":"Hashemi, Seyyed Ali","first_name":"Seyyed Ali"},{"first_name":"John M.","full_name":"Cioffi, John M.","last_name":"Cioffi"},{"first_name":"Andrea","last_name":"Goldsmith","full_name":"Goldsmith, Andrea"}],"title":"Sublinear latency for simplified successive cancellation decoding of polar codes","article_processing_charge":"No","volume":20,"arxiv":1,"oa_version":"Preprint","month":"01","day":"01","citation":{"ieee":"M. Mondelli, S. A. Hashemi, J. M. Cioffi, and A. Goldsmith, “Sublinear latency for simplified successive cancellation decoding of polar codes,” IEEE Transactions on Wireless Communications, vol. 20, no. 1. IEEE, pp. 18–27, 2021.","apa":"Mondelli, M., Hashemi, S. A., Cioffi, J. M., & Goldsmith, A. (2021). Sublinear latency for simplified successive cancellation decoding of polar codes. IEEE Transactions on Wireless Communications. IEEE. https://doi.org/10.1109/TWC.2020.3022922","short":"M. Mondelli, S.A. Hashemi, J.M. Cioffi, A. Goldsmith, IEEE Transactions on Wireless Communications 20 (2021) 18–27.","ista":"Mondelli M, Hashemi SA, Cioffi JM, Goldsmith A. 2021. Sublinear latency for simplified successive cancellation decoding of polar codes. IEEE Transactions on Wireless Communications. 20(1), 18–27.","ama":"Mondelli M, Hashemi SA, Cioffi JM, Goldsmith A. Sublinear latency for simplified successive cancellation decoding of polar codes. IEEE Transactions on Wireless Communications. 2021;20(1):18-27. doi:10.1109/TWC.2020.3022922","chicago":"Mondelli, Marco, Seyyed Ali Hashemi, John M. Cioffi, and Andrea Goldsmith. “Sublinear Latency for Simplified Successive Cancellation Decoding of Polar Codes.” IEEE Transactions on Wireless Communications. IEEE, 2021. https://doi.org/10.1109/TWC.2020.3022922.","mla":"Mondelli, Marco, et al. “Sublinear Latency for Simplified Successive Cancellation Decoding of Polar Codes.” IEEE Transactions on Wireless Communications, vol. 20, no. 1, IEEE, 2021, pp. 18–27, doi:10.1109/TWC.2020.3022922."},"article_type":"original","page":"18-27","related_material":{"record":[{"id":"8536","status":"public","relation":"earlier_version"}]},"date_updated":"2023-08-07T13:36:25Z","publication":"IEEE Transactions on Wireless Communications","year":"2021","oa":1,"quality_controlled":"1","type":"journal_article","language":[{"iso":"eng"}],"isi":1,"intvolume":" 20","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1909.04892"}],"publisher":"IEEE","scopus_import":"1","date_created":"2021-01-31T23:01:21Z","date_published":"2021-01-01T00:00:00Z","external_id":{"isi":["000607808800002"],"arxiv":["1909.04892"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"MaMo"}]},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file":[{"date_created":"2021-02-03T12:47:04Z","file_id":"9074","checksum":"d9acbc502390ed7a97e631d23ae19ecd","content_type":"application/pdf","access_level":"open_access","date_updated":"2021-02-03T12:47:04Z","success":1,"file_size":398075,"relation":"main_file","creator":"dernst","file_name":"2021_PhysicalRevLett_DeNicola.pdf"}],"arxiv":1,"has_accepted_license":"1","volume":126,"article_processing_charge":"Yes","day":"29","citation":{"ieee":"S. De Nicola, A. Michailidis, and M. Serbyn, “Entanglement view of dynamical quantum phase transitions,” Physical Review Letters, vol. 126, no. 4. American Physical Society, 2021.","apa":"De Nicola, S., Michailidis, A., & Serbyn, M. (2021). Entanglement view of dynamical quantum phase transitions. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.126.040602","ista":"De Nicola S, Michailidis A, Serbyn M. 2021. Entanglement view of dynamical quantum phase transitions. Physical Review Letters. 126(4), 040602.","short":"S. De Nicola, A. Michailidis, M. Serbyn, Physical Review Letters 126 (2021).","ama":"De Nicola S, Michailidis A, Serbyn M. Entanglement view of dynamical quantum phase transitions. Physical Review Letters. 2021;126(4). doi:10.1103/physrevlett.126.040602","mla":"De Nicola, Stefano, et al. “Entanglement View of Dynamical Quantum Phase Transitions.” Physical Review Letters, vol. 126, no. 4, 040602, American Physical Society, 2021, doi:10.1103/physrevlett.126.040602.","chicago":"De Nicola, Stefano, Alexios Michailidis, and Maksym Serbyn. “Entanglement View of Dynamical Quantum Phase Transitions.” Physical Review Letters. American Physical Society, 2021. https://doi.org/10.1103/physrevlett.126.040602."},"month":"01","file_date_updated":"2021-02-03T12:47:04Z","ddc":["530"],"oa_version":"Published Version","publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"project":[{"name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control","call_identifier":"H2020","_id":"23841C26-32DE-11EA-91FC-C7463DDC885E","grant_number":"850899"}],"acknowledgement":"S. D. N. acknowledges funding from the Institute of Science and Technology (IST) Austria and from the European Union’s Horizon 2020 Research and Innovation Programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. A. M. and M. S. were supported by the European Research Council (ERC) under the European Union’s Horizon 2020 Research and\r\nInnovation Programme (Grant Agreement No. 850899).","publication_status":"published","status":"public","ec_funded":1,"author":[{"orcid":"0000-0002-4842-6671","first_name":"Stefano","id":"42832B76-F248-11E8-B48F-1D18A9856A87","last_name":"De Nicola","full_name":"De Nicola, Stefano"},{"orcid":"0000-0002-8443-1064","full_name":"Michailidis, Alexios","last_name":"Michailidis","id":"36EBAD38-F248-11E8-B48F-1D18A9856A87","first_name":"Alexios"},{"orcid":"0000-0002-2399-5827","full_name":"Serbyn, Maksym","last_name":"Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","first_name":"Maksym"}],"title":"Entanglement view of dynamical quantum phase transitions","_id":"9048","issue":"4","abstract":[{"text":"The analogy between an equilibrium partition function and the return probability in many-body unitary dynamics has led to the concept of dynamical quantum phase transition (DQPT). DQPTs are defined by nonanalyticities in the return amplitude and are present in many models. In some cases, DQPTs can be related to equilibrium concepts, such as order parameters, yet their universal description is an open question. In this Letter, we provide first steps toward a classification of DQPTs by using a matrix product state description of unitary dynamics in the thermodynamic limit. This allows us to distinguish the two limiting cases of “precession” and “entanglement” DQPTs, which are illustrated using an analytical description in the quantum Ising model. While precession DQPTs are characterized by a large entanglement gap and are semiclassical in their nature, entanglement DQPTs occur near avoided crossings in the entanglement spectrum and can be distinguished by a complex pattern of nonlocal correlations. We demonstrate the existence of precession and entanglement DQPTs beyond Ising models, discuss observables that can distinguish them, and relate their interplay to complex DQPT phenomenology.","lang":"eng"}],"doi":"10.1103/physrevlett.126.040602","intvolume":" 126","publisher":"American Physical Society","isi":1,"quality_controlled":"1","language":[{"iso":"eng"}],"type":"journal_article","department":[{"_id":"MaSe"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","date_published":"2021-01-29T00:00:00Z","external_id":{"arxiv":["2008.04894"],"isi":["000613148200001"]},"date_created":"2021-02-01T09:20:00Z","publication":"Physical Review Letters","date_updated":"2023-09-05T12:08:58Z","article_type":"original","article_number":"040602","oa":1,"year":"2021","keyword":["General Physics and Astronomy"]},{"doi":"10.15479/AT:ISTA:9056","abstract":[{"text":"In this thesis we study persistence of multi-covers of Euclidean balls and the geometric structures underlying their computation, in particular Delaunay mosaics and Voronoi tessellations. The k-fold cover for some discrete input point set consists of the space where at least k balls of radius r around the input points overlap. Persistence is a notion that captures, in some sense, the topology of the shape underlying the input. While persistence is usually computed for the union of balls, the k-fold cover is of interest as it captures local density,\r\nand thus might approximate the shape of the input better if the input data is noisy. To compute persistence of these k-fold covers, we need a discretization that is provided by higher-order Delaunay mosaics. We present and implement a simple and efficient algorithm for the computation of higher-order Delaunay mosaics, and use it to give experimental results for their combinatorial properties. The algorithm makes use of a new geometric structure, the rhomboid tiling. It contains the higher-order Delaunay mosaics as slices, and by introducing a filtration\r\nfunction on the tiling, we also obtain higher-order α-shapes as slices. These allow us to compute persistence of the multi-covers for varying radius r; the computation for varying k is less straight-foward and involves the rhomboid tiling directly. We apply our algorithms to experimental sphere packings to shed light on their structural properties. Finally, inspired by periodic structures in packings and materials, we propose and implement an algorithm for periodic Delaunay triangulations to be integrated into the Computational Geometry Algorithms Library (CGAL), and discuss the implications on persistence for periodic data sets.","lang":"eng"}],"_id":"9056","author":[{"orcid":"0000-0002-8882-5116","last_name":"Osang","full_name":"Osang, Georg F","first_name":"Georg F","id":"464B40D6-F248-11E8-B48F-1D18A9856A87"}],"title":"Multi-cover persistence and Delaunay mosaics","supervisor":[{"id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","first_name":"Herbert","full_name":"Edelsbrunner, Herbert","last_name":"Edelsbrunner","orcid":"0000-0002-9823-6833"}],"place":"Klosterneuburg","publication_status":"published","status":"public","publication_identifier":{"issn":["2663-337X"]},"oa_version":"Published Version","month":"02","file_date_updated":"2021-02-03T10:37:28Z","ddc":["006","514","516"],"day":"01","citation":{"mla":"Osang, Georg F. Multi-Cover Persistence and Delaunay Mosaics. Institute of Science and Technology Austria, 2021, doi:10.15479/AT:ISTA:9056.","chicago":"Osang, Georg F. “Multi-Cover Persistence and Delaunay Mosaics.” Institute of Science and Technology Austria, 2021. https://doi.org/10.15479/AT:ISTA:9056.","ama":"Osang GF. Multi-cover persistence and Delaunay mosaics. 2021. doi:10.15479/AT:ISTA:9056","ista":"Osang GF. 2021. Multi-cover persistence and Delaunay mosaics. Klosterneuburg: Institute of Science and Technology Austria.","short":"G.F. Osang, Multi-Cover Persistence and Delaunay Mosaics, Institute of Science and Technology Austria, 2021.","ieee":"G. F. Osang, “Multi-cover persistence and Delaunay mosaics,” Institute of Science and Technology Austria, Klosterneuburg, 2021.","apa":"Osang, G. F. (2021). Multi-cover persistence and Delaunay mosaics. Institute of Science and Technology Austria, Klosterneuburg. https://doi.org/10.15479/AT:ISTA:9056"},"article_processing_charge":"No","has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file":[{"creator":"patrickd","relation":"source_file","file_size":13446994,"file_name":"thesis_source.zip","date_updated":"2021-02-03T10:37:28Z","content_type":"application/zip","checksum":"bcf27986147cab0533b6abadd74e7629","access_level":"closed","date_created":"2021-02-02T14:09:25Z","file_id":"9063"},{"date_created":"2021-02-02T14:09:18Z","file_id":"9064","content_type":"application/pdf","checksum":"9cc8af266579a464385bbe2aff6af606","access_level":"open_access","date_updated":"2021-02-02T14:09:18Z","success":1,"relation":"main_file","file_size":5210329,"creator":"patrickd","file_name":"thesis_pdfA2b.pdf"}],"degree_awarded":"PhD","alternative_title":["ISTA Thesis"],"year":"2021","oa":1,"page":"134","related_material":{"record":[{"id":"187","relation":"part_of_dissertation","status":"public"},{"id":"8703","relation":"part_of_dissertation","status":"public"}]},"date_updated":"2023-09-07T13:29:01Z","date_created":"2021-02-02T14:11:06Z","date_published":"2021-02-01T00:00:00Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","department":[{"_id":"HeEd"},{"_id":"GradSch"}],"type":"dissertation","language":[{"iso":"eng"}],"publisher":"Institute of Science and Technology Austria"},{"publication_identifier":{"eissn":["1529-2401"],"issn":["0270-6474"]},"project":[{"name":"Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development","call_identifier":"H2020","_id":"260018B0-B435-11E9-9278-68D0E5697425","grant_number":"725780"},{"name":"Molecular Mechanisms of Neural Stem Cell Lineage Progression","grant_number":"F07805","_id":"059F6AB4-7A3F-11EA-A408-12923DDC885E"}],"status":"public","publication_status":"published","acknowledgement":"Work in the I.L.H.-O. laboratory was supported by European Research Council Grant ERC-2015-CoG 681577 and German Research Foundation Ha 4466/10-1, Ha4466/11-1, Ha4466/12-1, SPP 1665, and SFB 936B5. Work in the S.J.B.B. laboratory was supported by Biotechnology and Biological Sciences Research Council BB/P003796/1, Medical Research Council MR/K004387/1 and MR/T033320/1, Wellcome Trust 215199/Z/19/Z and 102386/Z/13/Z, and John Fell Fund. Work in the S.H. laboratory was supported by European Research Council Grants ERC-2016-CoG 725780 LinPro and FWF SFB F78. This work was supported by National Institutes of Health Grant NIMH 1R01MH110553 to N.V.D.M.G. Work in the J.A.C. laboratory was supported by the Ludwig Family Foundation, Simons Foundation SFARI Research Award, and National Institutes of Health/National Institute of Mental Health R01 MH102365 and R01MH113852. The B.V. laboratory was supported by Whitehall Foundation 2017-12-73, National Science Foundation 1736028, National Institutes of Health, National Institute of General Medical Sciences R01GM134363-01, and Halıcıoğlu Data Science Institute Fellowship. This work was supported by the University of California San Diego School of Medicine.","ec_funded":1,"author":[{"first_name":"Ileana L.","full_name":"Hanganu-Opatz, Ileana L.","last_name":"Hanganu-Opatz"},{"first_name":"Simon J. B.","full_name":"Butt, Simon J. B.","last_name":"Butt"},{"id":"37B36620-F248-11E8-B48F-1D18A9856A87","first_name":"Simon","full_name":"Hippenmeyer, Simon","last_name":"Hippenmeyer","orcid":"0000-0003-2279-1061"},{"first_name":"Natalia V.","full_name":"De Marco García, Natalia V.","last_name":"De Marco García"},{"first_name":"Jessica A.","last_name":"Cardin","full_name":"Cardin, Jessica A."},{"full_name":"Voytek, Bradley","last_name":"Voytek","first_name":"Bradley"},{"first_name":"Alysson R.","last_name":"Muotri","full_name":"Muotri, Alysson R."}],"title":"The logic of developing neocortical circuits in health and disease","_id":"9073","issue":"5","abstract":[{"text":"The sensory and cognitive abilities of the mammalian neocortex are underpinned by intricate columnar and laminar circuits formed from an array of diverse neuronal populations. One approach to determining how interactions between these circuit components give rise to complex behavior is to investigate the rules by which cortical circuits are formed and acquire functionality during development. This review summarizes recent research on the development of the neocortex, from genetic determination in neural stem cells through to the dynamic role that specific neuronal populations play in the earliest circuits of neocortex, and how they contribute to emergent function and cognition. While many of these endeavors take advantage of model systems, consideration will also be given to advances in our understanding of activity in nascent human circuits. Such cross-species perspective is imperative when investigating the mechanisms underlying the dysfunction of early neocortical circuits in neurodevelopmental disorders, so that one can identify targets amenable to therapeutic intervention.","lang":"eng"}],"doi":"10.1523/jneurosci.1655-20.2020","file":[{"file_id":"11414","date_created":"2022-05-27T06:59:55Z","file_name":"2021_JourNeuroscience_Hanganu.pdf","file_size":1031150,"creator":"dernst","relation":"main_file","success":1,"date_updated":"2022-05-27T06:59:55Z","access_level":"open_access","content_type":"application/pdf","checksum":"578fd7ed1a0aef74bce61bea2d987b33"}],"has_accepted_license":"1","volume":41,"article_processing_charge":"No","day":"03","citation":{"ieee":"I. L. Hanganu-Opatz et al., “The logic of developing neocortical circuits in health and disease,” The Journal of Neuroscience, vol. 41, no. 5. Society for Neuroscience, pp. 813–822, 2021.","apa":"Hanganu-Opatz, I. L., Butt, S. J. B., Hippenmeyer, S., De Marco García, N. V., Cardin, J. A., Voytek, B., & Muotri, A. R. (2021). The logic of developing neocortical circuits in health and disease. The Journal of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/jneurosci.1655-20.2020","short":"I.L. Hanganu-Opatz, S.J.B. Butt, S. Hippenmeyer, N.V. De Marco García, J.A. Cardin, B. Voytek, A.R. Muotri, The Journal of Neuroscience 41 (2021) 813–822.","ama":"Hanganu-Opatz IL, Butt SJB, Hippenmeyer S, et al. The logic of developing neocortical circuits in health and disease. The Journal of Neuroscience. 2021;41(5):813-822. doi:10.1523/jneurosci.1655-20.2020","ista":"Hanganu-Opatz IL, Butt SJB, Hippenmeyer S, De Marco García NV, Cardin JA, Voytek B, Muotri AR. 2021. The logic of developing neocortical circuits in health and disease. The Journal of Neuroscience. 41(5), 813–822.","mla":"Hanganu-Opatz, Ileana L., et al. “The Logic of Developing Neocortical Circuits in Health and Disease.” The Journal of Neuroscience, vol. 41, no. 5, Society for Neuroscience, 2021, pp. 813–22, doi:10.1523/jneurosci.1655-20.2020.","chicago":"Hanganu-Opatz, Ileana L., Simon J. B. Butt, Simon Hippenmeyer, Natalia V. De Marco García, Jessica A. Cardin, Bradley Voytek, and Alysson R. Muotri. “The Logic of Developing Neocortical Circuits in Health and Disease.” The Journal of Neuroscience. Society for Neuroscience, 2021. https://doi.org/10.1523/jneurosci.1655-20.2020."},"file_date_updated":"2022-05-27T06:59:55Z","ddc":["570"],"month":"02","pmid":1,"oa_version":"Published Version","publication":"The Journal of Neuroscience","date_updated":"2023-09-05T14:03:17Z","article_type":"original","page":"813-822","oa":1,"year":"2021","keyword":["General Neuroscience"],"intvolume":" 41","publisher":"Society for Neuroscience","isi":1,"language":[{"iso":"eng"}],"type":"journal_article","quality_controlled":"1","department":[{"_id":"SiHi"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","external_id":{"isi":["000616763400002"],"pmid":["33431633"]},"date_published":"2021-02-03T00:00:00Z","scopus_import":"1","date_created":"2021-02-03T12:23:51Z"},{"type":"preprint","language":[{"iso":"eng"}],"article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2020.12.31.425016"}],"publisher":"Cold Spring Harbor Laboratory","date_created":"2021-02-04T07:23:23Z","oa_version":"Preprint","date_published":"2021-01-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"01","department":[{"_id":"SiHi"}],"day":"01","citation":{"ama":"Anderson DJ, Pauler F, McKenna A, Shendure J, Hippenmeyer S, Horwitz MS. Simultaneous identification of brain cell type and lineage via single cell RNA sequencing. bioRxiv. doi:10.1101/2020.12.31.425016","ista":"Anderson DJ, Pauler F, McKenna A, Shendure J, Hippenmeyer S, Horwitz MS. Simultaneous identification of brain cell type and lineage via single cell RNA sequencing. bioRxiv, 10.1101/2020.12.31.425016.","short":"D.J. Anderson, F. Pauler, A. McKenna, J. Shendure, S. Hippenmeyer, M.S. Horwitz, BioRxiv (n.d.).","apa":"Anderson, D. J., Pauler, F., McKenna, A., Shendure, J., Hippenmeyer, S., & Horwitz, M. S. (n.d.). Simultaneous identification of brain cell type and lineage via single cell RNA sequencing. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.12.31.425016","ieee":"D. J. Anderson, F. Pauler, A. McKenna, J. Shendure, S. Hippenmeyer, and M. S. Horwitz, “Simultaneous identification of brain cell type and lineage via single cell RNA sequencing,” bioRxiv. Cold Spring Harbor Laboratory.","mla":"Anderson, Donovan J., et al. “Simultaneous Identification of Brain Cell Type and Lineage via Single Cell RNA Sequencing.” BioRxiv, Cold Spring Harbor Laboratory, doi:10.1101/2020.12.31.425016.","chicago":"Anderson, Donovan J., Florian Pauler, Aaron McKenna, Jay Shendure, Simon Hippenmeyer, and Marshall S. Horwitz. “Simultaneous Identification of Brain Cell Type and Lineage via Single Cell RNA Sequencing.” BioRxiv. Cold Spring Harbor Laboratory, n.d. https://doi.org/10.1101/2020.12.31.425016."},"ec_funded":1,"status":"public","publication_status":"submitted","acknowledgement":"We thank Bill Bolosky, Microsoft Research, for earlier work showing proof of concept in TCGA\r\nbulk RNA-seq data. Supported by the Paul G. Allen Frontiers Group (University of Washington);\r\nNIH R00HG010152 (Dartmouth); and NÖ Forschung und Bildung n[f+b] life science call grant\r\n(C13-002) to SH, and the European Research Council (ERC) under the European Union’s\r\nHorizon 2020 research and innovation program 725780 LinPro to SH.","date_updated":"2021-02-04T07:29:53Z","project":[{"call_identifier":"H2020","name":"Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development","grant_number":"725780","_id":"260018B0-B435-11E9-9278-68D0E5697425"}],"publication":"bioRxiv","doi":"10.1101/2020.12.31.425016","year":"2021","abstract":[{"lang":"eng","text":"Acquired mutations are sufficiently frequent such that the genome of a single cell offers a record of its history of cell divisions. Among more common somatic genomic alterations are loss of heterozygosity (LOH). Large LOH events are potentially detectable in single cell RNA sequencing (scRNA-seq) datasets as tracts of monoallelic expression for constitutionally heterozygous single nucleotide variants (SNVs) located among contiguous genes. We identified runs of monoallelic expression, consistent with LOH, uniquely distributed throughout the genome in single cell brain cortex transcriptomes of F1 hybrids involving different inbred mouse strains. We then phylogenetically reconstructed single cell lineages and simultaneously identified cell types by corresponding gene expression patterns. Our results are consistent with progenitor cells giving rise to multiple cortical cell types through stereotyped expansion and distinct waves of neurogenesis. Compared to engineered recording systems, LOH events accumulate throughout the genome and across the lifetime of an organism, affording tremendous capacity for encoding lineage information and increasing resolution for later cell divisions. This approach can conceivably be computationally incorporated into scRNA-seq analysis and may be useful for organisms where genetic engineering is prohibitive, such as humans."}],"_id":"9082","author":[{"first_name":"Donovan J.","full_name":"Anderson, Donovan J.","last_name":"Anderson"},{"first_name":"Florian","id":"48EA0138-F248-11E8-B48F-1D18A9856A87","last_name":"Pauler","full_name":"Pauler, Florian"},{"last_name":"McKenna","full_name":"McKenna, Aaron","first_name":"Aaron"},{"full_name":"Shendure, Jay","last_name":"Shendure","first_name":"Jay"},{"last_name":"Hippenmeyer","full_name":"Hippenmeyer, Simon","first_name":"Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2279-1061"},{"first_name":"Marshall S.","full_name":"Horwitz, Marshall S.","last_name":"Horwitz"}],"title":"Simultaneous identification of brain cell type and lineage via single cell RNA sequencing","oa":1},{"_id":"9093","author":[{"first_name":"Oleksandr","full_name":"Marchukov, Oleksandr","last_name":"Marchukov"},{"id":"37D278BC-F248-11E8-B48F-1D18A9856A87","first_name":"Artem","full_name":"Volosniev, Artem","last_name":"Volosniev","orcid":"0000-0003-0393-5525"}],"title":"Shape of a sound wave in a weakly-perturbed Bose gas","doi":"10.21468/scipostphys.10.2.025","issue":"2","abstract":[{"text":"We employ the Gross-Pitaevskii equation to study acoustic emission generated in a uniform Bose gas by a static impurity. The impurity excites a sound-wave packet, which propagates through the gas. We calculate the shape of this wave packet in the limit of long wave lengths, and argue that it is possible to extract properties of the impurity by observing this shape. We illustrate here this possibility for a Bose gas with a trapped impurity atom -- an example of a relevant experimental setup. Presented results are general for all one-dimensional systems described by the nonlinear Schrödinger equation and can also be used in nonatomic systems, e.g., to analyze light propagation in nonlinear optical media. Finally, we calculate the shape of the sound-wave packet for a three-dimensional Bose gas assuming a spherically symmetric perturbation.","lang":"eng"}],"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"}],"publication_identifier":{"issn":["2542-4653"]},"ec_funded":1,"status":"public","acknowledgement":"We acknowledge fruitful discussions with Dr. Simos Mistakidis regarding beyond mean-field\r\neffects in our system. We also thank Prof. Maxim Olshanii for valuable suggestions to improve\r\nthe manuscript.O.V.M acknowledges the support from the National Science Foundation\r\nthrough grants No. PHY-1402249, No. PHY-1607221, and No. PHY-1912542 and the\r\nBinational (US-Israel) Science Foundation through grant No. 2015616, as well as by the Israel\r\nScience Foundation (grant No. 1287/17) and from the German Aeronautics and Space Administration\r\n(DLR) through Grant No. 50WM1957. This work has also received funding from\r\nthe DFG Project No.413495248 [VO 2437/1-1] and European Union’s Horizon 2020 research\r\nand innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411\r\n(A. G. V.)","publication_status":"published","ddc":["530"],"month":"02","file_date_updated":"2021-02-09T07:06:22Z","day":"03","citation":{"chicago":"Marchukov, Oleksandr, and Artem Volosniev. “Shape of a Sound Wave in a Weakly-Perturbed Bose Gas.” SciPost Physics. SciPost Foundation, 2021. https://doi.org/10.21468/scipostphys.10.2.025.","mla":"Marchukov, Oleksandr, and Artem Volosniev. “Shape of a Sound Wave in a Weakly-Perturbed Bose Gas.” SciPost Physics, vol. 10, no. 2, 025, SciPost Foundation, 2021, doi:10.21468/scipostphys.10.2.025.","ama":"Marchukov O, Volosniev A. Shape of a sound wave in a weakly-perturbed Bose gas. SciPost Physics. 2021;10(2). doi:10.21468/scipostphys.10.2.025","short":"O. Marchukov, A. Volosniev, SciPost Physics 10 (2021).","ista":"Marchukov O, Volosniev A. 2021. Shape of a sound wave in a weakly-perturbed Bose gas. SciPost Physics. 10(2), 025.","ieee":"O. Marchukov and A. Volosniev, “Shape of a sound wave in a weakly-perturbed Bose gas,” SciPost Physics, vol. 10, no. 2. SciPost Foundation, 2021.","apa":"Marchukov, O., & Volosniev, A. (2021). Shape of a sound wave in a weakly-perturbed Bose gas. SciPost Physics. SciPost Foundation. https://doi.org/10.21468/scipostphys.10.2.025"},"oa_version":"Published Version","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"arxiv":1,"file":[{"file_id":"9105","date_created":"2021-02-09T07:06:22Z","file_name":"2021_SciPostPhysics_Marchukov.pdf","file_size":666512,"relation":"main_file","creator":"dernst","access_level":"open_access","content_type":"application/pdf","checksum":"9fd614b7ab49999e7267874df2582f7e","success":1,"date_updated":"2021-02-09T07:06:22Z"}],"article_processing_charge":"No","volume":10,"has_accepted_license":"1","oa":1,"year":"2021","date_updated":"2023-08-07T13:39:37Z","publication":"SciPost Physics","article_type":"original","article_number":"025","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"MiLe"}],"date_created":"2021-02-04T12:39:24Z","external_id":{"isi":["000646783100027"],"arxiv":["2004.08075"]},"date_published":"2021-02-03T00:00:00Z","intvolume":" 10","publisher":"SciPost Foundation","type":"journal_article","language":[{"iso":"eng"}],"quality_controlled":"1","isi":1},{"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","department":[{"_id":"MiSi"}],"date_created":"2021-02-05T10:08:04Z","scopus_import":"1","external_id":{"pmid":["33533935"],"isi":["000626365700001"]},"date_published":"2021-04-05T00:00:00Z","publisher":"Rockefeller University Press","intvolume":" 220","type":"journal_article","quality_controlled":"1","language":[{"iso":"eng"}],"isi":1,"oa":1,"year":"2021","date_updated":"2023-09-05T13:57:53Z","publication":"Journal of Cell Biology","article_number":"e202006081","article_type":"original","ddc":["570"],"month":"04","file_date_updated":"2022-05-12T14:16:21Z","pmid":1,"citation":{"ama":"Leithner AF, Altenburger L, Hauschild R, et al. Dendritic cell actin dynamics control contact duration and priming efficiency at the immunological synapse. Journal of Cell Biology. 2021;220(4). doi:10.1083/jcb.202006081","short":"A.F. Leithner, L. Altenburger, R. Hauschild, F.P. Assen, K. Rottner, S. TEB, A. Diz-Muñoz, J. Stein, M.K. Sixt, Journal of Cell Biology 220 (2021).","ista":"Leithner AF, Altenburger L, Hauschild R, Assen FP, Rottner K, TEB S, Diz-Muñoz A, Stein J, Sixt MK. 2021. Dendritic cell actin dynamics control contact duration and priming efficiency at the immunological synapse. Journal of Cell Biology. 220(4), e202006081.","apa":"Leithner, A. F., Altenburger, L., Hauschild, R., Assen, F. P., Rottner, K., TEB, S., … Sixt, M. K. (2021). Dendritic cell actin dynamics control contact duration and priming efficiency at the immunological synapse. Journal of Cell Biology. Rockefeller University Press. https://doi.org/10.1083/jcb.202006081","ieee":"A. F. Leithner et al., “Dendritic cell actin dynamics control contact duration and priming efficiency at the immunological synapse,” Journal of Cell Biology, vol. 220, no. 4. Rockefeller University Press, 2021.","mla":"Leithner, Alexander F., et al. “Dendritic Cell Actin Dynamics Control Contact Duration and Priming Efficiency at the Immunological Synapse.” Journal of Cell Biology, vol. 220, no. 4, e202006081, Rockefeller University Press, 2021, doi:10.1083/jcb.202006081.","chicago":"Leithner, Alexander F, LM Altenburger, R Hauschild, Frank P Assen, K Rottner, Stradal TEB, A Diz-Muñoz, JV Stein, and Michael K Sixt. “Dendritic Cell Actin Dynamics Control Contact Duration and Priming Efficiency at the Immunological Synapse.” Journal of Cell Biology. Rockefeller University Press, 2021. https://doi.org/10.1083/jcb.202006081."},"day":"05","oa_version":"Published Version","license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","file":[{"date_created":"2022-05-12T14:16:21Z","file_id":"11367","date_updated":"2022-05-12T14:16:21Z","success":1,"checksum":"843ebc153847c8626e13c9c5ce71d533","content_type":"application/pdf","access_level":"open_access","creator":"dernst","relation":"main_file","file_size":5102328,"file_name":"2021_JournCellBiology_Leithner.pdf"}],"tmp":{"image":"/images/cc_by_nc_sa.png","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","short":"CC BY-NC-SA (4.0)"},"article_processing_charge":"No","volume":220,"has_accepted_license":"1","_id":"9094","title":"Dendritic cell actin dynamics control contact duration and priming efficiency at the immunological synapse","author":[{"id":"3B1B77E4-F248-11E8-B48F-1D18A9856A87","first_name":"Alexander F","full_name":"Leithner, Alexander F","last_name":"Leithner","orcid":"0000-0002-1073-744X"},{"last_name":"Altenburger","full_name":"Altenburger, LM","first_name":"LM"},{"first_name":"R","full_name":"Hauschild, R","last_name":"Hauschild"},{"full_name":"Assen, Frank P","last_name":"Assen","id":"3A8E7F24-F248-11E8-B48F-1D18A9856A87","first_name":"Frank P","orcid":"0000-0003-3470-6119"},{"full_name":"Rottner, K","last_name":"Rottner","first_name":"K"},{"first_name":"Stradal","full_name":"TEB, Stradal","last_name":"TEB"},{"first_name":"A","last_name":"Diz-Muñoz","full_name":"Diz-Muñoz, A"},{"first_name":"JV","full_name":"Stein, JV","last_name":"Stein"},{"orcid":"0000-0002-6620-9179","full_name":"Sixt, Michael K","last_name":"Sixt","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","first_name":"Michael K"}],"doi":"10.1083/jcb.202006081","abstract":[{"text":"Dendritic cells (DCs) are crucial for the priming of naive T cells and the initiation of adaptive immunity. Priming is initiated at a heterologous cell–cell contact, the immunological synapse (IS). While it is established that F-actin dynamics regulates signaling at the T cell side of the contact, little is known about the cytoskeletal contribution on the DC side. Here, we show that the DC actin cytoskeleton is decisive for the formation of a multifocal synaptic structure, which correlates with T cell priming efficiency. DC actin at the IS appears in transient foci that are dynamized by the WAVE regulatory complex (WRC). The absence of the WRC in DCs leads to stabilized contacts with T cells, caused by an increase in ICAM1-integrin–mediated cell–cell adhesion. This results in lower numbers of activated and proliferating T cells, demonstrating an important role for DC actin in the regulation of immune synapse functionality.","lang":"eng"}],"issue":"4","publication_identifier":{"issn":["0021-9525"],"eissn":["1540-8140"]},"publication_status":"published","status":"public"},{"department":[{"_id":"PeJo"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2021-01-26T00:00:00Z","scopus_import":"1","date_created":"2021-02-07T23:01:12Z","intvolume":" 11","publisher":"Springer Nature","quality_controlled":"1","type":"journal_article","language":[{"iso":"eng"}],"oa":1,"year":"2021","publication":"Scientific Reports","date_updated":"2022-08-19T07:22:23Z","article_type":"original","article_number":"2204","day":"26","citation":{"chicago":"Pandey, Rakesh, Yusur Al-Nuaimi, Rajiv Kumar Mishra, Sarah K. Spurgeon, and Marc Goodfellow. “Role of Subnetworks Mediated by TNF α, IL-23/IL-17 and IL-15 in a Network Involved in the Pathogenesis of Psoriasis.” Scientific Reports. Springer Nature, 2021. https://doi.org/10.1038/s41598-020-80507-7.","mla":"Pandey, Rakesh, et al. “Role of Subnetworks Mediated by TNF α, IL-23/IL-17 and IL-15 in a Network Involved in the Pathogenesis of Psoriasis.” Scientific Reports, vol. 11, 2204, Springer Nature, 2021, doi:10.1038/s41598-020-80507-7.","ieee":"R. Pandey, Y. Al-Nuaimi, R. K. Mishra, S. K. Spurgeon, and M. Goodfellow, “Role of subnetworks mediated by TNF α, IL-23/IL-17 and IL-15 in a network involved in the pathogenesis of psoriasis,” Scientific Reports, vol. 11. Springer Nature, 2021.","apa":"Pandey, R., Al-Nuaimi, Y., Mishra, R. K., Spurgeon, S. K., & Goodfellow, M. (2021). Role of subnetworks mediated by TNF α, IL-23/IL-17 and IL-15 in a network involved in the pathogenesis of psoriasis. Scientific Reports. Springer Nature. https://doi.org/10.1038/s41598-020-80507-7","ama":"Pandey R, Al-Nuaimi Y, Mishra RK, Spurgeon SK, Goodfellow M. Role of subnetworks mediated by TNF α, IL-23/IL-17 and IL-15 in a network involved in the pathogenesis of psoriasis. Scientific Reports. 2021;11. doi:10.1038/s41598-020-80507-7","ista":"Pandey R, Al-Nuaimi Y, Mishra RK, Spurgeon SK, Goodfellow M. 2021. Role of subnetworks mediated by TNF α, IL-23/IL-17 and IL-15 in a network involved in the pathogenesis of psoriasis. Scientific Reports. 11, 2204.","short":"R. Pandey, Y. Al-Nuaimi, R.K. Mishra, S.K. Spurgeon, M. Goodfellow, Scientific Reports 11 (2021)."},"month":"01","file_date_updated":"2021-02-09T07:33:23Z","ddc":["570"],"oa_version":"Published Version","file":[{"file_name":"2021_ScientificReports_Pandey.pdf","relation":"main_file","file_size":2885056,"creator":"dernst","success":1,"date_updated":"2021-02-09T07:33:23Z","access_level":"open_access","checksum":"e8a68df48750712671f5c47b0228e531","content_type":"application/pdf","file_id":"9106","date_created":"2021-02-09T07:33:23Z"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"has_accepted_license":"1","article_processing_charge":"No","volume":11,"author":[{"first_name":"Rakesh","full_name":"Pandey, Rakesh","last_name":"Pandey"},{"last_name":"Al-Nuaimi","full_name":"Al-Nuaimi, Yusur","first_name":"Yusur"},{"last_name":"Mishra","full_name":"Mishra, Rajiv Kumar","first_name":"Rajiv Kumar","id":"46CB58F2-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Sarah K.","full_name":"Spurgeon, Sarah K.","last_name":"Spurgeon"},{"first_name":"Marc","last_name":"Goodfellow","full_name":"Goodfellow, Marc"}],"title":"Role of subnetworks mediated by TNF α, IL-23/IL-17 and IL-15 in a network involved in the pathogenesis of psoriasis","_id":"9097","abstract":[{"text":"Psoriasis is a chronic inflammatory skin disease clinically characterized by the appearance of red colored, well-demarcated plaques with thickened skin and with silvery scales. Recent studies have established the involvement of a complex signalling network of interactions between cytokines, immune cells and skin cells called keratinocytes. Keratinocytes form the cells of the outermost layer of the skin (epidermis). Visible plaques in psoriasis are developed due to the fast proliferation and unusual differentiation of keratinocyte cells. Despite that, the exact mechanism of the appearance of these plaques in the cytokine-immune cell network is not clear. A mathematical model embodying interactions between key immune cells believed to be involved in psoriasis, keratinocytes and relevant cytokines has been developed. The complex network formed of these interactions poses several challenges. Here, we choose to study subnetworks of this complex network and initially focus on interactions involving TNFα, IL-23/IL-17, and IL-15. These are chosen based on known evidence of their therapeutic efficacy. In addition, we explore the role of IL-15 in the pathogenesis of psoriasis and its potential as a future drug target for a novel treatment option. We perform steady state analyses for these subnetworks and demonstrate that the interactions between cells, driven by cytokines could cause the emergence of a psoriasis state (hyper-proliferation of keratinocytes) when levels of TNFα, IL-23/IL-17 or IL-15 are increased. The model results explain and support the clinical potentiality of anti-cytokine treatments. Interestingly, our results suggest different dynamic scenarios underpin the pathogenesis of psoriasis, depending upon the dominant cytokines of subnetworks. We observed that the increase in the level of IL-23/IL-17 and IL-15 could lead to psoriasis via a bistable route, whereas an increase in the level of TNFα would lead to a monotonic and gradual disease progression. Further, we demonstrate how this insight, bistability, could be exploited to improve the current therapies and develop novel treatment strategies for psoriasis.","lang":"eng"}],"doi":"10.1038/s41598-020-80507-7","publication_identifier":{"eissn":["20452322"]},"status":"public","publication_status":"published","acknowledgement":"RP acknowledges the Department of Science and Technology, India for the support through the DST-INSPIRE Faculty Award (DST/INSPIRE/04/2015/001939). This work was supported by the Engineering and Physical Sciences Research Council (EPSRC), United Kingdom (Grant numbers EP/J018295/1, EP/J018392/1, EP/N014391/1). The contribution of RP was also supported by the later Grant. This work was generously supported by the Welcome Trust Institutional Strategic Support Award (204909/Z/16/Z) too. The contribution of MG was supported by the EPSRC via EP/N014391/1 and a Wellcome Trust Institutional Strategic Support Award (WT105618MA). The contribution of YA was generously supported by the Wellcome Trust Institutional Strategic Support Award (WT105618MA)."},{"abstract":[{"lang":"eng","text":"We study properties of the volume of projections of the n-dimensional\r\ncross-polytope $\\crosp^n = \\{ x \\in \\R^n \\mid |x_1| + \\dots + |x_n| \\leqslant 1\\}.$ We prove that the projection of $\\crosp^n$ onto a k-dimensional coordinate subspace has the maximum possible volume for k=2 and for k=3.\r\nWe obtain the exact lower bound on the volume of such a projection onto a two-dimensional plane. Also, we show that there exist local maxima which are not global ones for the volume of a projection of $\\crosp^n$ onto a k-dimensional subspace for any n>k⩾2."}],"issue":"5","doi":"10.1016/j.disc.2021.112312","title":"On the volume of projections of the cross-polytope","author":[{"full_name":"Ivanov, Grigory","last_name":"Ivanov","id":"87744F66-5C6F-11EA-AFE0-D16B3DDC885E","first_name":"Grigory"}],"_id":"9098","publication_status":"published","status":"public","acknowledgement":"Research was supported by the Russian Foundation for Basic Research, project 18-01-00036A (Theorems 1.5 and 5.3) and by the Ministry of Education and Science of the Russian Federation in the framework of MegaGrant no 075-15-2019-1926 (Theorems 1.2 and 7.3).","publication_identifier":{"issn":["0012365X"]},"oa_version":"Preprint","citation":{"apa":"Ivanov, G. (2021). On the volume of projections of the cross-polytope. Discrete Mathematics. Elsevier. https://doi.org/10.1016/j.disc.2021.112312","ieee":"G. Ivanov, “On the volume of projections of the cross-polytope,” Discrete Mathematics, vol. 344, no. 5. Elsevier, 2021.","ama":"Ivanov G. On the volume of projections of the cross-polytope. Discrete Mathematics. 2021;344(5). doi:10.1016/j.disc.2021.112312","short":"G. Ivanov, Discrete Mathematics 344 (2021).","ista":"Ivanov G. 2021. On the volume of projections of the cross-polytope. Discrete Mathematics. 344(5), 112312.","mla":"Ivanov, Grigory. “On the Volume of Projections of the Cross-Polytope.” Discrete Mathematics, vol. 344, no. 5, 112312, Elsevier, 2021, doi:10.1016/j.disc.2021.112312.","chicago":"Ivanov, Grigory. “On the Volume of Projections of the Cross-Polytope.” Discrete Mathematics. Elsevier, 2021. https://doi.org/10.1016/j.disc.2021.112312."},"day":"01","month":"05","article_processing_charge":"No","volume":344,"arxiv":1,"year":"2021","oa":1,"article_number":"112312","article_type":"original","publication":"Discrete Mathematics","date_updated":"2023-08-07T13:40:37Z","external_id":{"isi":["000633365200001"],"arxiv":["1808.09165"]},"date_published":"2021-05-01T00:00:00Z","date_created":"2021-02-07T23:01:12Z","scopus_import":"1","department":[{"_id":"UlWa"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","isi":1,"type":"journal_article","quality_controlled":"1","language":[{"iso":"eng"}],"publisher":"Elsevier","intvolume":" 344","main_file_link":[{"url":"https://arxiv.org/abs/1808.09165","open_access":"1"}]},{"doi":"10.1007/s00013-020-01564-y","issue":"5","abstract":[{"lang":"eng","text":"We show that on an Abelian variety over an algebraically closed field of positive characteristic, the obstruction to lifting an automorphism to a field of characteristic zero as a morphism vanishes if and only if it vanishes for lifting it as a derived autoequivalence. We also compare the deformation space of these two types of deformations."}],"_id":"9099","author":[{"first_name":"Tanya K","id":"4D046628-F248-11E8-B48F-1D18A9856A87","last_name":"Srivastava","full_name":"Srivastava, Tanya K"}],"title":"Lifting automorphisms on Abelian varieties as derived autoequivalences","ec_funded":1,"status":"public","acknowledgement":"I would like to thank Piotr Achinger, Daniel Huybrechts, Katrina Honigs, Marcin Lara, and Maciek Zdanowicz for the mathematical discussions, Tamas Hausel for hosting me in his research group at IST Austria, and the referees for their valuable suggestions. This research has received funding from the European Union’s Horizon 2020 research and innovation programme under Marie Sklodowska-Curie Grant Agreement No. 754411.","publication_status":"published","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"}],"publication_identifier":{"eissn":["14208938"],"issn":["0003889X"]},"oa_version":"Preprint","month":"05","day":"01","citation":{"ama":"Srivastava TK. Lifting automorphisms on Abelian varieties as derived autoequivalences. Archiv der Mathematik. 2021;116(5):515-527. doi:10.1007/s00013-020-01564-y","ista":"Srivastava TK. 2021. Lifting automorphisms on Abelian varieties as derived autoequivalences. Archiv der Mathematik. 116(5), 515–527.","short":"T.K. Srivastava, Archiv Der Mathematik 116 (2021) 515–527.","ieee":"T. K. Srivastava, “Lifting automorphisms on Abelian varieties as derived autoequivalences,” Archiv der Mathematik, vol. 116, no. 5. Springer Nature, pp. 515–527, 2021.","apa":"Srivastava, T. K. (2021). Lifting automorphisms on Abelian varieties as derived autoequivalences. Archiv Der Mathematik. Springer Nature. https://doi.org/10.1007/s00013-020-01564-y","mla":"Srivastava, Tanya K. “Lifting Automorphisms on Abelian Varieties as Derived Autoequivalences.” Archiv Der Mathematik, vol. 116, no. 5, Springer Nature, 2021, pp. 515–27, doi:10.1007/s00013-020-01564-y.","chicago":"Srivastava, Tanya K. “Lifting Automorphisms on Abelian Varieties as Derived Autoequivalences.” Archiv Der Mathematik. Springer Nature, 2021. https://doi.org/10.1007/s00013-020-01564-y."},"article_processing_charge":"No","volume":116,"arxiv":1,"year":"2021","oa":1,"article_type":"original","page":"515-527","date_updated":"2023-08-07T13:42:38Z","publication":"Archiv der Mathematik","scopus_import":"1","date_created":"2021-02-07T23:01:13Z","external_id":{"isi":["000612580200001"],"arxiv":["2001.07762"]},"date_published":"2021-05-01T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"TaHa"}],"type":"journal_article","language":[{"iso":"eng"}],"quality_controlled":"1","isi":1,"intvolume":" 116","main_file_link":[{"url":"https://arxiv.org/abs/2001.07762","open_access":"1"}],"publisher":"Springer Nature"},{"volume":34,"article_processing_charge":"No","has_accepted_license":"1","file":[{"file_size":561340,"creator":"dernst","relation":"main_file","file_name":"2021_JourEvolBiology_Faria.pdf","date_updated":"2021-02-09T09:04:02Z","success":1,"checksum":"5755856a5368d4b4cdd6fad5ab27f4d1","content_type":"application/pdf","access_level":"open_access","date_created":"2021-02-09T09:04:02Z","file_id":"9108"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa_version":"Published Version","file_date_updated":"2021-02-09T09:04:02Z","ddc":["570"],"month":"01","day":"18","citation":{"chicago":"Faria, Rui, Kerstin Johannesson, and Sean Stankowski. “Speciation in Marine Environments: Diving under the Surface.” Journal of Evolutionary Biology. Wiley, 2021. https://doi.org/10.1111/jeb.13756.","mla":"Faria, Rui, et al. “Speciation in Marine Environments: Diving under the Surface.” Journal of Evolutionary Biology, vol. 34, no. 1, Wiley, 2021, pp. 4–15, doi:10.1111/jeb.13756.","ista":"Faria R, Johannesson K, Stankowski S. 2021. Speciation in marine environments: Diving under the surface. Journal of Evolutionary Biology. 34(1), 4–15.","ama":"Faria R, Johannesson K, Stankowski S. Speciation in marine environments: Diving under the surface. Journal of Evolutionary Biology. 2021;34(1):4-15. doi:10.1111/jeb.13756","short":"R. Faria, K. Johannesson, S. Stankowski, Journal of Evolutionary Biology 34 (2021) 4–15.","apa":"Faria, R., Johannesson, K., & Stankowski, S. (2021). Speciation in marine environments: Diving under the surface. Journal of Evolutionary Biology. Wiley. https://doi.org/10.1111/jeb.13756","ieee":"R. Faria, K. Johannesson, and S. Stankowski, “Speciation in marine environments: Diving under the surface,” Journal of Evolutionary Biology, vol. 34, no. 1. Wiley, pp. 4–15, 2021."},"publication_status":"published","acknowledgement":"We would like to thank all the participants in the speciation symposium of the Marine Evolution Conference in Sweden for the interesting discussions and to all the contributors to this special\r\nissue. We thank Nicolas Bierne and Wolf Blanckenhorn (reviewer and editor, respectively) for valuable suggestions during the revision of the manuscript, and Roger K. Butlin and Anja M. Westram for very helpful comments on a previous draft. We would also like to thank Wolf Blanckenhorn and Nicola Cook, the Editor in Chief and the Managing Editor of the Journal of Evolutionary Biology, respectively, for the encouragement and support in putting together this special issue, and to all reviewers involved. RF was financed by the European Union's Horizon 2020 Research and Innovation Programme under the Marie Sklodowska-Curie Grant Agreement Number 706376 and is currently financed by the FEDER Funds through the Operational Competitiveness Factors Program COMPETE and by National Funds through the Foundation for Science and Technology (FCT) within the scope of the project ‘Hybrabbid' (PTDC/BIA-EVL/30628/2017-POCI-01-0145-FEDER-030628). KJ was funded by the Swedish\r\nResearch Council, VR. SS was supported by NERC and ERC funding awarded to Roger K. Butlin.","status":"public","publication_identifier":{"issn":["1010061X"],"eissn":["14209101"]},"doi":"10.1111/jeb.13756","issue":"1","abstract":[{"lang":"eng","text":"Marine environments are inhabited by a broad representation of the tree of life, yet our understanding of speciation in marine ecosystems is extremely limited compared with terrestrial and freshwater environments. Developing a more comprehensive picture of speciation in marine environments requires that we 'dive under the surface' by studying a wider range of taxa and ecosystems is necessary for a more comprehensive picture of speciation. Although studying marine evolutionary processes is often challenging, recent technological advances in different fields, from maritime engineering to genomics, are making it increasingly possible to study speciation of marine life forms across diverse ecosystems and taxa. Motivated by recent research in the field, including the 14 contributions in this issue, we highlight and discuss six axes of research that we think will deepen our understanding of speciation in the marine realm: (a) study a broader range of marine environments and organisms; (b) identify the reproductive barriers driving speciation between marine taxa; (c) understand the role of different genomic architectures underlying reproductive isolation; (d) infer the evolutionary history of divergence using model‐based approaches; (e) study patterns of hybridization and introgression between marine taxa; and (f) implement highly interdisciplinary, collaborative research programmes. In outlining these goals, we hope to inspire researchers to continue filling this critical knowledge gap surrounding the origins of marine biodiversity."}],"_id":"9100","author":[{"last_name":"Faria","full_name":"Faria, Rui","first_name":"Rui"},{"last_name":"Johannesson","full_name":"Johannesson, Kerstin","first_name":"Kerstin"},{"full_name":"Stankowski, Sean","last_name":"Stankowski","id":"43161670-5719-11EA-8025-FABC3DDC885E","first_name":"Sean"}],"title":"Speciation in marine environments: Diving under the surface","type":"journal_article","quality_controlled":"1","language":[{"iso":"eng"}],"isi":1,"intvolume":" 34","publisher":"Wiley","scopus_import":"1","date_created":"2021-02-07T23:01:13Z","external_id":{"isi":["000608367500001"]},"date_published":"2021-01-18T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"NiBa"}],"article_type":"original","page":"4-15","date_updated":"2023-08-07T13:42:08Z","publication":"Journal of Evolutionary Biology","year":"2021","oa":1},{"publication_identifier":{"eissn":["14359456"],"issn":["14359448"]},"acknowledgement":"We thank Jamie Gilks and Terry Miles for their support at Crocodiles of the World. We are grateful to the Department of Cognitive Biology, University of Vienna for provision of working space and hardware. Finally, we would like to thank Cliodhna Quigley, Rachael Harrison and Urs A. Reber for discussion. Open Access funding provided by Lund University. This project was funded by the Marietta Blau grant (BMFWF) to S. A. R.","status":"public","publication_status":"published","_id":"9101","title":"Early life differences in behavioral predispositions in two Alligatoridae species","author":[{"last_name":"Reber","full_name":"Reber, Stephan A.","first_name":"Stephan A."},{"orcid":"0000-0001-7425-2372","full_name":"Oh, Jinook","last_name":"Oh","id":"403169A4-080F-11EA-9993-BF3F3DDC885E","first_name":"Jinook"},{"last_name":"Janisch","full_name":"Janisch, Judith","first_name":"Judith"},{"first_name":"Colin","last_name":"Stevenson","full_name":"Stevenson, Colin"},{"full_name":"Foggett, Shaun","last_name":"Foggett","first_name":"Shaun"},{"first_name":"Anna","full_name":"Wilkinson, Anna","last_name":"Wilkinson"}],"doi":"10.1007/s10071-020-01461-5","abstract":[{"text":"Behavioral predispositions are innate tendencies of animals to behave in a given way without the input of learning. They increase survival chances and, due to environmental and ecological challenges, may vary substantially even between closely related taxa. These differences are likely to be especially pronounced in long-lived species like crocodilians. This order is particularly relevant for comparative cognition due to its phylogenetic proximity to birds. Here we compared early life behavioral predispositions in two Alligatoridae species. We exposed American alligator and spectacled caiman hatchlings to three different novel situations: a novel object, a novel environment that was open and a novel environment with a shelter. This was then repeated a week later. During exposure to the novel environments, alligators moved around more and explored a larger range of the arena than the caimans. When exposed to the novel object, the alligators reduced the mean distance to the novel object in the second phase, while the caimans further increased it, indicating diametrically opposite ontogenetic development in behavioral predispositions. Although all crocodilian hatchlings face comparable challenges, e.g., high predation pressure, the effectiveness of parental protection might explain the observed pattern. American alligators are apex predators capable of protecting their offspring against most dangers, whereas adult spectacled caimans are frequently predated themselves. Their distancing behavior might be related to increased predator avoidance and also explain the success of invasive spectacled caimans in the natural habitats of other crocodilians.","lang":"eng"}],"issue":"4","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file":[{"file_id":"9107","date_created":"2021-02-09T07:40:14Z","file_name":"2021_AnimalCognition_Reber.pdf","relation":"main_file","creator":"dernst","file_size":1117991,"success":1,"date_updated":"2021-02-09T07:40:14Z","access_level":"open_access","checksum":"d9dfa0d1de6d684692b041d936dd858e","content_type":"application/pdf"}],"article_processing_charge":"No","volume":24,"has_accepted_license":"1","month":"07","file_date_updated":"2021-02-09T07:40:14Z","ddc":["590"],"citation":{"mla":"Reber, Stephan A., et al. “Early Life Differences in Behavioral Predispositions in Two Alligatoridae Species.” Animal Cognition, vol. 24, no. 4, Springer Nature, 2021, pp. 753–64, doi:10.1007/s10071-020-01461-5.","chicago":"Reber, Stephan A., Jinook Oh, Judith Janisch, Colin Stevenson, Shaun Foggett, and Anna Wilkinson. “Early Life Differences in Behavioral Predispositions in Two Alligatoridae Species.” Animal Cognition. Springer Nature, 2021. https://doi.org/10.1007/s10071-020-01461-5.","short":"S.A. Reber, J. Oh, J. Janisch, C. Stevenson, S. Foggett, A. Wilkinson, Animal Cognition 24 (2021) 753–764.","ista":"Reber SA, Oh J, Janisch J, Stevenson C, Foggett S, Wilkinson A. 2021. Early life differences in behavioral predispositions in two Alligatoridae species. Animal Cognition. 24(4), 753–764.","ama":"Reber SA, Oh J, Janisch J, Stevenson C, Foggett S, Wilkinson A. Early life differences in behavioral predispositions in two Alligatoridae species. Animal Cognition. 2021;24(4):753-764. doi:10.1007/s10071-020-01461-5","apa":"Reber, S. A., Oh, J., Janisch, J., Stevenson, C., Foggett, S., & Wilkinson, A. (2021). Early life differences in behavioral predispositions in two Alligatoridae species. Animal Cognition. Springer Nature. https://doi.org/10.1007/s10071-020-01461-5","ieee":"S. A. Reber, J. Oh, J. Janisch, C. Stevenson, S. Foggett, and A. Wilkinson, “Early life differences in behavioral predispositions in two Alligatoridae species,” Animal Cognition, vol. 24, no. 4. Springer Nature, pp. 753–764, 2021."},"day":"01","oa_version":"Published Version","date_updated":"2023-08-07T13:41:08Z","publication":"Animal Cognition","page":"753-764","article_type":"original","oa":1,"year":"2021","publisher":"Springer Nature","intvolume":" 24","quality_controlled":"1","language":[{"iso":"eng"}],"type":"journal_article","isi":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"SyCr"}],"date_created":"2021-02-07T23:01:13Z","scopus_import":"1","external_id":{"isi":["000608382100001"]},"date_published":"2021-07-01T00:00:00Z"},{"volume":5,"article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"arxiv":1,"file":[{"file_id":"9112","date_created":"2021-02-11T14:43:59Z","access_level":"open_access","checksum":"3f02e9d47c428484733da0f588a3c069","content_type":"application/pdf","success":1,"date_updated":"2021-02-11T14:43:59Z","file_name":"2020_JourApplCompTopology_Brown.pdf","file_size":2090265,"relation":"main_file","creator":"dernst"}],"oa_version":"Published Version","month":"03","ddc":["510"],"file_date_updated":"2021-02-11T14:43:59Z","citation":{"chicago":"Brown, Adam, Omer Bobrowski, Elizabeth Munch, and Bei Wang. “Probabilistic Convergence and Stability of Random Mapper Graphs.” Journal of Applied and Computational Topology. Springer Nature, 2021. https://doi.org/10.1007/s41468-020-00063-x.","mla":"Brown, Adam, et al. “Probabilistic Convergence and Stability of Random Mapper Graphs.” Journal of Applied and Computational Topology, vol. 5, no. 1, Springer Nature, 2021, pp. 99–140, doi:10.1007/s41468-020-00063-x.","ieee":"A. Brown, O. Bobrowski, E. Munch, and B. Wang, “Probabilistic convergence and stability of random mapper graphs,” Journal of Applied and Computational Topology, vol. 5, no. 1. Springer Nature, pp. 99–140, 2021.","apa":"Brown, A., Bobrowski, O., Munch, E., & Wang, B. (2021). Probabilistic convergence and stability of random mapper graphs. Journal of Applied and Computational Topology. Springer Nature. https://doi.org/10.1007/s41468-020-00063-x","ista":"Brown A, Bobrowski O, Munch E, Wang B. 2021. Probabilistic convergence and stability of random mapper graphs. Journal of Applied and Computational Topology. 5(1), 99–140.","short":"A. Brown, O. Bobrowski, E. Munch, B. Wang, Journal of Applied and Computational Topology 5 (2021) 99–140.","ama":"Brown A, Bobrowski O, Munch E, Wang B. Probabilistic convergence and stability of random mapper graphs. Journal of Applied and Computational Topology. 2021;5(1):99-140. doi:10.1007/s41468-020-00063-x"},"day":"01","ec_funded":1,"acknowledgement":"AB was supported in part by the European Union’s Horizon 2020 research and innovation\r\nprogramme under the Marie Sklodowska-Curie GrantAgreement No. 754411 and NSF IIS-1513616. OB was supported in part by the Israel Science Foundation, Grant 1965/19. BW was supported in part by NSF IIS-1513616 and DBI-1661375. EM was supported in part by NSF CMMI-1800466, DMS-1800446, and CCF-1907591.We would like to thank the Institute for Mathematics and its Applications for hosting a workshop titled Bridging Statistics and Sheaves in May 2018, where this work was conceived.\r\nOpen Access funding provided by Institute of Science and Technology (IST Austria).","status":"public","publication_status":"published","project":[{"name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"publication_identifier":{"issn":["2367-1726"],"eissn":["2367-1734"]},"doi":"10.1007/s41468-020-00063-x","abstract":[{"lang":"eng","text":"We study the probabilistic convergence between the mapper graph and the Reeb graph of a topological space X equipped with a continuous function f:X→R. We first give a categorification of the mapper graph and the Reeb graph by interpreting them in terms of cosheaves and stratified covers of the real line R. We then introduce a variant of the classic mapper graph of Singh et al. (in: Eurographics symposium on point-based graphics, 2007), referred to as the enhanced mapper graph, and demonstrate that such a construction approximates the Reeb graph of (X,f) when it is applied to points randomly sampled from a probability density function concentrated on (X,f). Our techniques are based on the interleaving distance of constructible cosheaves and topological estimation via kernel density estimates. Following Munch and Wang (In: 32nd international symposium on computational geometry, volume 51 of Leibniz international proceedings in informatics (LIPIcs), Dagstuhl, Germany, pp 53:1–53:16, 2016), we first show that the mapper graph of (X,f), a constructible R-space (with a fixed open cover), approximates the Reeb graph of the same space. We then construct an isomorphism between the mapper of (X,f) to the mapper of a super-level set of a probability density function concentrated on (X,f). Finally, building on the approach of Bobrowski et al. (Bernoulli 23(1):288–328, 2017b), we show that, with high probability, we can recover the mapper of the super-level set given a sufficiently large sample. Our work is the first to consider the mapper construction using the theory of cosheaves in a probabilistic setting. It is part of an ongoing effort to combine sheaf theory, probability, and statistics, to support topological data analysis with random data."}],"issue":"1","_id":"9111","title":"Probabilistic convergence and stability of random mapper graphs","author":[{"id":"70B7FDF6-608D-11E9-9333-8535E6697425","first_name":"Adam","full_name":"Brown, Adam","last_name":"Brown"},{"last_name":"Bobrowski","full_name":"Bobrowski, Omer","first_name":"Omer"},{"full_name":"Munch, Elizabeth","last_name":"Munch","first_name":"Elizabeth"},{"full_name":"Wang, Bei","last_name":"Wang","first_name":"Bei"}],"quality_controlled":"1","type":"journal_article","language":[{"iso":"eng"}],"publisher":"Springer Nature","intvolume":" 5","date_created":"2021-02-11T14:41:02Z","scopus_import":"1","external_id":{"arxiv":["1909.03488"]},"date_published":"2021-03-01T00:00:00Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","department":[{"_id":"HeEd"}],"page":"99-140","article_type":"original","date_updated":"2023-09-05T15:37:56Z","publication":"Journal of Applied and Computational Topology","year":"2021","oa":1},{"publication_identifier":{"eissn":["2168-0485"]},"acknowledgement":"M.O.T. acknowledges DST/TMD/HFC/2 K18/58, DST-SERB, MHRD fast track, and DST Nanomission forfinancialassistance. Z.M.B. acknowledges CSIR-SRF fellowship fromMHRD, India. S.A.F. acknowledges support from IST Austria.","status":"public","publication_status":"published","author":[{"last_name":"Manzoor Bhat","full_name":"Manzoor Bhat, Zahid Manzoor","first_name":"Zahid Manzoor"},{"last_name":"Thimmappa","full_name":"Thimmappa, Ravikumar","first_name":"Ravikumar"},{"first_name":"Neethu Christudas ","last_name":"Dargily","full_name":"Dargily, Neethu Christudas "},{"first_name":"Abdul ","last_name":"Raafik","full_name":"Raafik, Abdul "},{"last_name":"Kottaichamy","full_name":"Kottaichamy, Alagar Raja ","first_name":"Alagar Raja "},{"first_name":"Mruthyunjayachari Chattanahalli ","full_name":"Devendrachari, Mruthyunjayachari Chattanahalli ","last_name":"Devendrachari"},{"first_name":"Mahesh","full_name":"Itagi, Mahesh","last_name":"Itagi"},{"last_name":" Makri Nimbegondi Kotresh","full_name":" Makri Nimbegondi Kotresh, Harish","first_name":"Harish"},{"last_name":"Freunberger","full_name":"Freunberger, Stefan Alexander","first_name":"Stefan Alexander","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","orcid":"0000-0003-2902-5319"},{"first_name":"Musthafa ","last_name":"Ottakam Thotiyl","full_name":"Ottakam Thotiyl, Musthafa "}],"title":"Ambient condition alcohol reforming to hydrogen with electricity output","_id":"9113","issue":"8","abstract":[{"text":"“Hydrogen economy” could enable a carbon-neutral sustainable energy chain. However, issues with safety, storage, and transport of molecular hydrogen impede its realization. Alcohols as liquid H2 carriers could be enablers, but state-of-the-art reforming is difficult, requiring high temperatures >200 °C and pressures >25 bar, and the resulting H2 is carbonized beyond tolerance levels for direct use in fuel cells. Here, we demonstrate ambient temperature and pressure alcohol reforming in a fuel cell (ARFC) with a simultaneous electrical power output. The alcohol is oxidized at the alkaline anode, where the resulting CO2 is sequestrated as carbonate. Carbon-free H2 is liberated at the acidic cathode. The neutralization energy between the alkaline anode and the acidic cathode drives the process, particularly the unusually high entropy gain (1.27-fold ΔH). The significantly positive temperature coefficient of the resulting electromotive force allows us to harvest a large fraction of the output energy from the surrounding, achieving a thermodynamic efficiency as high as 2.27. MoS2 as the cathode catalyst allows alcohol reforming even under open-air conditions, a challenge that state-of-the-art alcohol reforming failed to overcome. We further show reforming of a wide range of alcohols. The ARFC offers an unprecedented route toward hydrogen economy as CO2 is simultaneously captured and pure H2 produced at mild conditions.","lang":"eng"}],"doi":"10.1021/acssuschemeng.0c07547","article_processing_charge":"No","volume":9,"day":"11","citation":{"mla":"Manzoor Bhat, Zahid Manzoor, et al. “Ambient Condition Alcohol Reforming to Hydrogen with Electricity Output.” ACS Sustainable Chemistry and Engineering, vol. 9, no. 8, American Chemical Society, 2021, pp. 3104–11, doi:10.1021/acssuschemeng.0c07547.","chicago":"Manzoor Bhat, Zahid Manzoor, Ravikumar Thimmappa, Neethu Christudas Dargily, Abdul Raafik, Alagar Raja Kottaichamy, Mruthyunjayachari Chattanahalli Devendrachari, Mahesh Itagi, Harish Makri Nimbegondi Kotresh, Stefan Alexander Freunberger, and Musthafa Ottakam Thotiyl. “Ambient Condition Alcohol Reforming to Hydrogen with Electricity Output.” ACS Sustainable Chemistry and Engineering. American Chemical Society, 2021. https://doi.org/10.1021/acssuschemeng.0c07547.","ama":"Manzoor Bhat ZM, Thimmappa R, Dargily NC, et al. Ambient condition alcohol reforming to hydrogen with electricity output. ACS Sustainable Chemistry and Engineering. 2021;9(8):3104-3111. doi:10.1021/acssuschemeng.0c07547","ista":"Manzoor Bhat ZM, Thimmappa R, Dargily NC, Raafik A, Kottaichamy AR, Devendrachari MC, Itagi M, Makri Nimbegondi Kotresh H, Freunberger SA, Ottakam Thotiyl M. 2021. Ambient condition alcohol reforming to hydrogen with electricity output. ACS Sustainable Chemistry and Engineering. 9(8), 3104–3111.","short":"Z.M. Manzoor Bhat, R. Thimmappa, N.C. Dargily, A. Raafik, A.R. Kottaichamy, M.C. Devendrachari, M. Itagi, H. Makri Nimbegondi Kotresh, S.A. Freunberger, M. Ottakam Thotiyl, ACS Sustainable Chemistry and Engineering 9 (2021) 3104–3111.","apa":"Manzoor Bhat, Z. M., Thimmappa, R., Dargily, N. C., Raafik, A., Kottaichamy, A. R., Devendrachari, M. C., … Ottakam Thotiyl, M. (2021). Ambient condition alcohol reforming to hydrogen with electricity output. ACS Sustainable Chemistry and Engineering. American Chemical Society. https://doi.org/10.1021/acssuschemeng.0c07547","ieee":"Z. M. Manzoor Bhat et al., “Ambient condition alcohol reforming to hydrogen with electricity output,” ACS Sustainable Chemistry and Engineering, vol. 9, no. 8. American Chemical Society, pp. 3104–3111, 2021."},"month":"02","oa_version":"None","publication":"ACS Sustainable Chemistry and Engineering","date_updated":"2023-08-07T13:43:19Z","article_type":"original","page":"3104-3111","year":"2021","intvolume":" 9","publisher":"American Chemical Society","isi":1,"type":"journal_article","language":[{"iso":"eng"}],"quality_controlled":"1","department":[{"_id":"StFr"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000625460400010"]},"date_published":"2021-02-11T00:00:00Z","scopus_import":"1","date_created":"2021-02-12T09:20:18Z"},{"ec_funded":1,"publication_status":"published","acknowledgement":"M.C. has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385. ICN2\r\nacknowledges funding from Generalitat de Catalunya 2017 SGR 327. ICN2 is supported by the Severo Ochoa program from Spanish MINECO (Grant No. SEV-2017-0706) and is funded by the CERCA Programme/Generalitat de Catalunya. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 823717 − ESTEEM3. M.V.K. acknowledges the support by the European Research Council under the Horizon 2020 Framework Program (ERC Consolidator Grant SCALEHALO\r\nGrant Agreement No. 819740) and by FET-OPEN project no. 862656 (DROP-IT).","status":"public","project":[{"grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"International IST Doctoral Program"}],"publication_identifier":{"eissn":["2380-8195"]},"doi":"10.1021/acsenergylett.0c02448","issue":"2","abstract":[{"lang":"eng","text":"Cesium lead halides have intrinsically unstable crystal lattices and easily transform within perovskite and nonperovskite structures. In this work, we explore the conversion of the perovskite CsPbBr3 into Cs4PbBr6 in the presence of PbS at 450 °C to produce doped nanocrystal-based composites with embedded Cs4PbBr6 nanoprecipitates. We show that PbBr2 is extracted from CsPbBr3 and diffuses into the PbS lattice with a consequent increase in the concentration of free charge carriers. This new doping strategy enables the adjustment of the density of charge carriers between 1019 and 1020 cm–3, and it may serve as a general strategy for doping other nanocrystal-based semiconductors."}],"_id":"9118","author":[{"first_name":"Mariano","id":"45D7531A-F248-11E8-B48F-1D18A9856A87","last_name":"Calcabrini","full_name":"Calcabrini, Mariano"},{"first_name":"Aziz","last_name":"Genc","full_name":"Genc, Aziz"},{"orcid":"0000-0001-7313-6740","full_name":"Liu, Yu","last_name":"Liu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","first_name":"Yu"},{"first_name":"Tobias","id":"8BD9DE16-AB3C-11E9-9C8C-2A03E6697425","last_name":"Kleinhanns","full_name":"Kleinhanns, Tobias"},{"orcid":"0000-0002-6962-8598","first_name":"Seungho","id":"BB243B88-D767-11E9-B658-BC13E6697425","last_name":"Lee","full_name":"Lee, Seungho"},{"first_name":"Dmitry N.","full_name":"Dirin, Dmitry N.","last_name":"Dirin"},{"last_name":"Akkerman","full_name":"Akkerman, Quinten A.","first_name":"Quinten A."},{"first_name":"Maksym V.","full_name":"Kovalenko, Maksym V.","last_name":"Kovalenko"},{"first_name":"Jordi","full_name":"Arbiol, Jordi","last_name":"Arbiol"},{"full_name":"Ibáñez, Maria","last_name":"Ibáñez","id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","orcid":"0000-0001-5013-2843"}],"title":"Exploiting the lability of metal halide perovskites for doping semiconductor nanocomposites","article_processing_charge":"Yes (via OA deal)","volume":6,"has_accepted_license":"1","file":[{"access_level":"open_access","content_type":"application/pdf","checksum":"6fa7374bf8b95fdfe6e6c595322a6689","success":1,"date_updated":"2021-02-17T07:36:52Z","file_name":"2021_ACSEnergyLetters_Calcabrini.pdf","relation":"main_file","creator":"dernst","file_size":5071201,"file_id":"9155","date_created":"2021-02-17T07:36:52Z"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa_version":"Published Version","file_date_updated":"2021-02-17T07:36:52Z","ddc":["540"],"month":"01","day":"20","citation":{"apa":"Calcabrini, M., Genc, A., Liu, Y., Kleinhanns, T., Lee, S., Dirin, D. N., … Ibáñez, M. (2021). Exploiting the lability of metal halide perovskites for doping semiconductor nanocomposites. ACS Energy Letters. American Chemical Society. https://doi.org/10.1021/acsenergylett.0c02448","ieee":"M. Calcabrini et al., “Exploiting the lability of metal halide perovskites for doping semiconductor nanocomposites,” ACS Energy Letters, vol. 6, no. 2. American Chemical Society, pp. 581–587, 2021.","ista":"Calcabrini M, Genc A, Liu Y, Kleinhanns T, Lee S, Dirin DN, Akkerman QA, Kovalenko MV, Arbiol J, Ibáñez M. 2021. Exploiting the lability of metal halide perovskites for doping semiconductor nanocomposites. ACS Energy Letters. 6(2), 581–587.","ama":"Calcabrini M, Genc A, Liu Y, et al. Exploiting the lability of metal halide perovskites for doping semiconductor nanocomposites. ACS Energy Letters. 2021;6(2):581-587. doi:10.1021/acsenergylett.0c02448","short":"M. Calcabrini, A. Genc, Y. Liu, T. Kleinhanns, S. Lee, D.N. Dirin, Q.A. Akkerman, M.V. Kovalenko, J. Arbiol, M. Ibáñez, ACS Energy Letters 6 (2021) 581–587.","mla":"Calcabrini, Mariano, et al. “Exploiting the Lability of Metal Halide Perovskites for Doping Semiconductor Nanocomposites.” ACS Energy Letters, vol. 6, no. 2, American Chemical Society, 2021, pp. 581–87, doi:10.1021/acsenergylett.0c02448.","chicago":"Calcabrini, Mariano, Aziz Genc, Yu Liu, Tobias Kleinhanns, Seungho Lee, Dmitry N. Dirin, Quinten A. Akkerman, Maksym V. Kovalenko, Jordi Arbiol, and Maria Ibáñez. “Exploiting the Lability of Metal Halide Perovskites for Doping Semiconductor Nanocomposites.” ACS Energy Letters. American Chemical Society, 2021. https://doi.org/10.1021/acsenergylett.0c02448."},"article_type":"original","page":"581-587","related_material":{"record":[{"id":"12885","status":"public","relation":"dissertation_contains"}]},"date_updated":"2023-08-07T13:46:00Z","publication":"ACS Energy Letters","year":"2021","oa":1,"language":[{"iso":"eng"}],"quality_controlled":"1","type":"journal_article","isi":1,"intvolume":" 6","publisher":"American Chemical Society","scopus_import":"1","date_created":"2021-02-14T23:01:14Z","external_id":{"isi":["000619803400036"]},"date_published":"2021-01-20T00:00:00Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"MaIb"}]},{"volume":21,"article_processing_charge":"No","day":"15","citation":{"ama":"Fraisse C, Popovic I, Mazoyer C, et al. DILS: Demographic inferences with linked selection by using ABC. Molecular Ecology Resources. 2021;21:2629-2644. doi:10.1111/1755-0998.13323","short":"C. Fraisse, I. Popovic, C. Mazoyer, B. Spataro, S. Delmotte, J. Romiguier, É. Loire, A. Simon, N. Galtier, L. Duret, N. Bierne, X. Vekemans, C. Roux, Molecular Ecology Resources 21 (2021) 2629–2644.","ista":"Fraisse C, Popovic I, Mazoyer C, Spataro B, Delmotte S, Romiguier J, Loire É, Simon A, Galtier N, Duret L, Bierne N, Vekemans X, Roux C. 2021. DILS: Demographic inferences with linked selection by using ABC. Molecular Ecology Resources. 21, 2629–2644.","apa":"Fraisse, C., Popovic, I., Mazoyer, C., Spataro, B., Delmotte, S., Romiguier, J., … Roux, C. (2021). DILS: Demographic inferences with linked selection by using ABC. Molecular Ecology Resources. Wiley. https://doi.org/10.1111/1755-0998.13323","ieee":"C. Fraisse et al., “DILS: Demographic inferences with linked selection by using ABC,” Molecular Ecology Resources, vol. 21. Wiley, pp. 2629–2644, 2021.","chicago":"Fraisse, Christelle, Iva Popovic, Clément Mazoyer, Bruno Spataro, Stéphane Delmotte, Jonathan Romiguier, Étienne Loire, et al. “DILS: Demographic Inferences with Linked Selection by Using ABC.” Molecular Ecology Resources. Wiley, 2021. https://doi.org/10.1111/1755-0998.13323.","mla":"Fraisse, Christelle, et al. “DILS: Demographic Inferences with Linked Selection by Using ABC.” Molecular Ecology Resources, vol. 21, Wiley, 2021, pp. 2629–44, doi:10.1111/1755-0998.13323."},"month":"01","oa_version":"Preprint","publication_identifier":{"issn":["1755098X"],"eissn":["17550998"]},"status":"public","publication_status":"published","author":[{"id":"32DF5794-F248-11E8-B48F-1D18A9856A87","first_name":"Christelle","full_name":"Fraisse, Christelle","last_name":"Fraisse","orcid":"0000-0001-8441-5075"},{"full_name":"Popovic, Iva","last_name":"Popovic","first_name":"Iva"},{"first_name":"Clément","last_name":"Mazoyer","full_name":"Mazoyer, Clément"},{"last_name":"Spataro","full_name":"Spataro, Bruno","first_name":"Bruno"},{"last_name":"Delmotte","full_name":"Delmotte, Stéphane","first_name":"Stéphane"},{"first_name":"Jonathan","full_name":"Romiguier, Jonathan","last_name":"Romiguier"},{"first_name":"Étienne","full_name":"Loire, Étienne","last_name":"Loire"},{"first_name":"Alexis","full_name":"Simon, Alexis","last_name":"Simon"},{"first_name":"Nicolas","last_name":"Galtier","full_name":"Galtier, Nicolas"},{"full_name":"Duret, Laurent","last_name":"Duret","first_name":"Laurent"},{"last_name":"Bierne","full_name":"Bierne, Nicolas","first_name":"Nicolas"},{"first_name":"Xavier","full_name":"Vekemans, Xavier","last_name":"Vekemans"},{"first_name":"Camille","full_name":"Roux, Camille","last_name":"Roux"}],"title":"DILS: Demographic inferences with linked selection by using ABC","_id":"9119","abstract":[{"text":"We present DILS, a deployable statistical analysis platform for conducting demographic inferences with linked selection from population genomic data using an Approximate Bayesian Computation framework. DILS takes as input single‐population or two‐population data sets (multilocus fasta sequences) and performs three types of analyses in a hierarchical manner, identifying: (a) the best demographic model to study the importance of gene flow and population size change on the genetic patterns of polymorphism and divergence, (b) the best genomic model to determine whether the effective size Ne and migration rate N, m are heterogeneously distributed along the genome (implying linked selection) and (c) loci in genomic regions most associated with barriers to gene flow. Also available via a Web interface, an objective of DILS is to facilitate collaborative research in speciation genomics. Here, we show the performance and limitations of DILS by using simulations and finally apply the method to published data on a divergence continuum composed by 28 pairs of Mytilus mussel populations/species.","lang":"eng"}],"doi":"10.1111/1755-0998.13323","intvolume":" 21","main_file_link":[{"open_access":"1","url":"https://www.biorxiv.org/content/10.1101/2020.06.15.151597v2"}],"publisher":"Wiley","isi":1,"type":"journal_article","quality_controlled":"1","language":[{"iso":"eng"}],"department":[{"_id":"NiBa"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000614183100001"]},"date_published":"2021-01-15T00:00:00Z","scopus_import":"1","date_created":"2021-02-14T23:01:14Z","publication":"Molecular Ecology Resources","date_updated":"2023-08-07T13:45:18Z","article_type":"original","page":"2629-2644","oa":1,"year":"2021"},{"_id":"9121","title":"The BCS energy gap at low density","author":[{"orcid":"0000-0003-4476-2288","full_name":"Lauritsen, Asbjørn Bækgaard","last_name":"Lauritsen","id":"e1a2682f-dc8d-11ea-abe3-81da9ac728f1","first_name":"Asbjørn Bækgaard"}],"doi":"10.1007/s11005-021-01358-5","abstract":[{"lang":"eng","text":"We show that the energy gap for the BCS gap equation is\r\nΞ=μ(8e−2+o(1))exp(π2μ−−√a)\r\nin the low density limit μ→0. Together with the similar result for the critical temperature by Hainzl and Seiringer (Lett Math Phys 84: 99–107, 2008), this shows that, in the low density limit, the ratio of the energy gap and critical temperature is a universal constant independent of the interaction potential V. The results hold for a class of potentials with negative scattering length a and no bound states."}],"project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"publication_identifier":{"issn":["0377-9017"],"eissn":["1573-0530"]},"acknowledgement":"Most of this work was done as part of the author’s master’s thesis. The author would like to thank Jan Philip Solovej for his supervision of this process.\r\nOpen Access funding provided by Institute of Science and Technology (IST Austria)","status":"public","publication_status":"published","month":"02","file_date_updated":"2021-02-15T09:31:07Z","ddc":["510"],"citation":{"chicago":"Lauritsen, Asbjørn Bækgaard. “The BCS Energy Gap at Low Density.” Letters in Mathematical Physics. Springer Nature, 2021. https://doi.org/10.1007/s11005-021-01358-5.","mla":"Lauritsen, Asbjørn Bækgaard. “The BCS Energy Gap at Low Density.” Letters in Mathematical Physics, vol. 111, 20, Springer Nature, 2021, doi:10.1007/s11005-021-01358-5.","short":"A.B. Lauritsen, Letters in Mathematical Physics 111 (2021).","ista":"Lauritsen AB. 2021. The BCS energy gap at low density. Letters in Mathematical Physics. 111, 20.","ama":"Lauritsen AB. The BCS energy gap at low density. Letters in Mathematical Physics. 2021;111. doi:10.1007/s11005-021-01358-5","ieee":"A. B. Lauritsen, “The BCS energy gap at low density,” Letters in Mathematical Physics, vol. 111. Springer Nature, 2021.","apa":"Lauritsen, A. B. (2021). The BCS energy gap at low density. Letters in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s11005-021-01358-5"},"day":"12","oa_version":"Published Version","file":[{"file_id":"9122","date_created":"2021-02-15T09:31:07Z","access_level":"open_access","checksum":"eaf1b3ff5026f120f0929a5c417dc842","content_type":"application/pdf","success":1,"date_updated":"2021-02-15T09:31:07Z","file_name":"2021_LettersMathPhysics_Lauritsen.pdf","relation":"main_file","file_size":329332,"creator":"dernst"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"volume":111,"article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","oa":1,"keyword":["Mathematical Physics","Statistical and Nonlinear Physics"],"year":"2021","date_updated":"2023-09-05T15:17:16Z","publication":"Letters in Mathematical Physics","article_number":"20","article_type":"original","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","department":[{"_id":"GradSch"}],"date_created":"2021-02-15T09:27:14Z","external_id":{"isi":["000617531900001"]},"date_published":"2021-02-12T00:00:00Z","publisher":"Springer Nature","intvolume":" 111","quality_controlled":"1","type":"journal_article","language":[{"iso":"eng"}],"isi":1}]