---
_id: '14341'
abstract:
- lang: eng
  text: Flows through pipes and channels are, in practice, almost always turbulent,
    and the multiscale eddying motion is responsible for a major part of the encountered
    friction losses and pumping costs1. Conversely, for pulsatile flows, in particular
    for aortic blood flow, turbulence levels remain low despite relatively large peak
    velocities. For aortic blood flow, high turbulence levels are intolerable as they
    would damage the shear-sensitive endothelial cell layer2,3,4,5. Here we show that
    turbulence in ordinary pipe flow is diminished if the flow is driven in a pulsatile
    mode that incorporates all the key features of the cardiac waveform. At Reynolds
    numbers comparable to those of aortic blood flow, turbulence is largely inhibited,
    whereas at much higher speeds, the turbulent drag is reduced by more than 25%.
    This specific operation mode is more efficient when compared with steady driving,
    which is the present situation for virtually all fluid transport processes ranging
    from heating circuits to water, gas and oil pipelines.
acknowledged_ssus:
- _id: M-Shop
- _id: ScienComp
acknowledgement: We acknowledge the assistance of the Miba machine shop and the team
  of the ISTA-HPC cluster. We thank M. Quadrio for the discussions. The work was supported
  by the Simons Foundation (grant no. 662960) and by the Austrian Science Fund (grant
  no. I4188-N30), within Deutsche Forschungsgemeinschaft research unit FOR 2688.
article_processing_charge: No
article_type: original
author:
- first_name: Davide
  full_name: Scarselli, Davide
  id: 40315C30-F248-11E8-B48F-1D18A9856A87
  last_name: Scarselli
  orcid: 0000-0001-5227-4271
- first_name: Jose M
  full_name: Lopez Alonso, Jose M
  id: 40770848-F248-11E8-B48F-1D18A9856A87
  last_name: Lopez Alonso
  orcid: 0000-0002-0384-2022
- first_name: Atul
  full_name: Varshney, Atul
  id: 2A2006B2-F248-11E8-B48F-1D18A9856A87
  last_name: Varshney
  orcid: 0000-0002-3072-5999
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Scarselli D, Lopez Alonso JM, Varshney A, Hof B. Turbulence suppression by
    cardiac-cycle-inspired driving of pipe flow. <i>Nature</i>. 2023;621(7977):71-74.
    doi:<a href="https://doi.org/10.1038/s41586-023-06399-5">10.1038/s41586-023-06399-5</a>
  apa: Scarselli, D., Lopez Alonso, J. M., Varshney, A., &#38; Hof, B. (2023). Turbulence
    suppression by cardiac-cycle-inspired driving of pipe flow. <i>Nature</i>. Springer
    Nature. <a href="https://doi.org/10.1038/s41586-023-06399-5">https://doi.org/10.1038/s41586-023-06399-5</a>
  chicago: Scarselli, Davide, Jose M Lopez Alonso, Atul Varshney, and Björn Hof. “Turbulence
    Suppression by Cardiac-Cycle-Inspired Driving of Pipe Flow.” <i>Nature</i>. Springer
    Nature, 2023. <a href="https://doi.org/10.1038/s41586-023-06399-5">https://doi.org/10.1038/s41586-023-06399-5</a>.
  ieee: D. Scarselli, J. M. Lopez Alonso, A. Varshney, and B. Hof, “Turbulence suppression
    by cardiac-cycle-inspired driving of pipe flow,” <i>Nature</i>, vol. 621, no.
    7977. Springer Nature, pp. 71–74, 2023.
  ista: Scarselli D, Lopez Alonso JM, Varshney A, Hof B. 2023. Turbulence suppression
    by cardiac-cycle-inspired driving of pipe flow. Nature. 621(7977), 71–74.
  mla: Scarselli, Davide, et al. “Turbulence Suppression by Cardiac-Cycle-Inspired
    Driving of Pipe Flow.” <i>Nature</i>, vol. 621, no. 7977, Springer Nature, 2023,
    pp. 71–74, doi:<a href="https://doi.org/10.1038/s41586-023-06399-5">10.1038/s41586-023-06399-5</a>.
  short: D. Scarselli, J.M. Lopez Alonso, A. Varshney, B. Hof, Nature 621 (2023) 71–74.
date_created: 2023-09-17T22:01:09Z
date_published: 2023-09-07T00:00:00Z
date_updated: 2023-09-20T12:10:22Z
day: '07'
department:
- _id: BjHo
doi: 10.1038/s41586-023-06399-5
external_id:
  pmid:
  - '37673988'
intvolume: '       621'
issue: '7977'
language:
- iso: eng
month: '09'
oa_version: None
page: 71-74
pmid: 1
project:
- _id: 238598C6-32DE-11EA-91FC-C7463DDC885E
  grant_number: '662960'
  name: 'Revisiting the Turbulence Problem Using Statistical Mechanics: Experimental
    Studies on Transitional and Turbulent Flows'
- _id: 238B8092-32DE-11EA-91FC-C7463DDC885E
  call_identifier: FWF
  grant_number: I04188
  name: Instabilities in pulsating pipe flow of Newtonian and complex fluids
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA website
    relation: press_release
    url: https://www.ista.ac.at/en/news/pumping-like-the-heart/
scopus_import: '1'
status: public
title: Turbulence suppression by cardiac-cycle-inspired driving of pipe flow
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 621
year: '2023'
...
---
_id: '14361'
abstract:
- lang: eng
  text: Whether one considers swarming insects, flocking birds, or bacterial colonies,
    collective motion arises from the coordination of individuals and entails the
    adjustment of their respective velocities. In particular, in close confinements,
    such as those encountered by dense cell populations during development or regeneration,
    collective migration can only arise coordinately. Yet, how individuals unify their
    velocities is often not understood. Focusing on a finite number of cells in circular
    confinements, we identify waves of polymerizing actin that function as a pacemaker
    governing the speed of individual cells. We show that the onset of collective
    motion coincides with the synchronization of the wave nucleation frequencies across
    the population. Employing a simpler and more readily accessible mechanical model
    system of active spheres, we identify the synchronization of the individuals’
    internal oscillators as one of the essential requirements to reach the corresponding
    collective state. The mechanical ‘toy’ experiment illustrates that the global
    synchronous state is achieved by nearest neighbor coupling. We suggest by analogy
    that local coupling and the synchronization of actin waves are essential for the
    emergent, self-organized motion of cell collectives.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
- _id: M-Shop
acknowledgement: We thank K. O’Keeffe, E. Hannezo, P. Devreotes, C. Dessalles, and
  E. Martens for discussion and/or critical reading of the manuscript; the Bioimaging
  Facility of ISTA for excellent support, as well as the Life Science Facility and
  the Miba Machine Shop of ISTA. This work was supported by the European Research
  Council (ERC StG 281556 and CoG 724373) to M.S.
article_number: '5633'
article_processing_charge: Yes
article_type: original
author:
- first_name: Michael
  full_name: Riedl, Michael
  id: 3BE60946-F248-11E8-B48F-1D18A9856A87
  last_name: Riedl
  orcid: 0000-0003-4844-6311
- first_name: Isabelle D
  full_name: Mayer, Isabelle D
  id: 61763940-15b2-11ec-abd3-cfaddfbc66b4
  last_name: Mayer
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Riedl M, Mayer ID, Merrin J, Sixt MK, Hof B. Synchronization in collectively
    moving inanimate and living active matter. <i>Nature Communications</i>. 2023;14.
    doi:<a href="https://doi.org/10.1038/s41467-023-41432-1">10.1038/s41467-023-41432-1</a>
  apa: Riedl, M., Mayer, I. D., Merrin, J., Sixt, M. K., &#38; Hof, B. (2023). Synchronization
    in collectively moving inanimate and living active matter. <i>Nature Communications</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s41467-023-41432-1">https://doi.org/10.1038/s41467-023-41432-1</a>
  chicago: Riedl, Michael, Isabelle D Mayer, Jack Merrin, Michael K Sixt, and Björn
    Hof. “Synchronization in Collectively Moving Inanimate and Living Active Matter.”
    <i>Nature Communications</i>. Springer Nature, 2023. <a href="https://doi.org/10.1038/s41467-023-41432-1">https://doi.org/10.1038/s41467-023-41432-1</a>.
  ieee: M. Riedl, I. D. Mayer, J. Merrin, M. K. Sixt, and B. Hof, “Synchronization
    in collectively moving inanimate and living active matter,” <i>Nature Communications</i>,
    vol. 14. Springer Nature, 2023.
  ista: Riedl M, Mayer ID, Merrin J, Sixt MK, Hof B. 2023. Synchronization in collectively
    moving inanimate and living active matter. Nature Communications. 14, 5633.
  mla: Riedl, Michael, et al. “Synchronization in Collectively Moving Inanimate and
    Living Active Matter.” <i>Nature Communications</i>, vol. 14, 5633, Springer Nature,
    2023, doi:<a href="https://doi.org/10.1038/s41467-023-41432-1">10.1038/s41467-023-41432-1</a>.
  short: M. Riedl, I.D. Mayer, J. Merrin, M.K. Sixt, B. Hof, Nature Communications
    14 (2023).
date_created: 2023-09-24T22:01:10Z
date_published: 2023-09-13T00:00:00Z
date_updated: 2023-12-13T12:29:41Z
day: '13'
ddc:
- '530'
- '570'
department:
- _id: MiSi
- _id: NanoFab
- _id: BjHo
doi: 10.1038/s41467-023-41432-1
ec_funded: 1
external_id:
  isi:
  - '001087583700030'
  pmid:
  - '37704595'
file:
- access_level: open_access
  checksum: 82d2d4ad736cc8493db8ce45cd313f7b
  content_type: application/pdf
  creator: dernst
  date_created: 2023-09-25T08:32:37Z
  date_updated: 2023-09-25T08:32:37Z
  file_id: '14366'
  file_name: 2023_NatureComm_Riedl.pdf
  file_size: 2317272
  relation: main_file
  success: 1
file_date_updated: 2023-09-25T08:32:37Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 25A603A2-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '281556'
  name: Cytoskeletal force generation and force transduction of migrating leukocytes
- _id: 25FE9508-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '724373'
  name: Cellular navigation along spatial gradients
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Synchronization in collectively moving inanimate and living active matter
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2023'
...
---
_id: '14466'
abstract:
- lang: eng
  text: The first long-lived turbulent structures observable in planar shear flows
    take the form of localized stripes, inclined with respect to the mean flow direction.
    The dynamics of these stripes is central to transition, and recent studies proposed
    an analogy to directed percolation where the stripes’ proliferation is ultimately
    responsible for the turbulence becoming sustained. In the present study we focus
    on the internal stripe dynamics as well as on the eventual stripe expansion, and
    we compare the underlying mechanisms in pressure- and shear-driven planar flows,
    respectively, plane-Poiseuille and plane-Couette flow. Despite the similarities
    of the overall laminar–turbulence patterns, the stripe proliferation processes
    in the two cases are fundamentally different. Starting from the growth and sustenance
    of individual stripes, we find that in plane-Couette flow new streaks are created
    stochastically throughout the stripe whereas in plane-Poiseuille flow streak creation
    is deterministic and occurs locally at the downstream tip. Because of the up/downstream
    symmetry, Couette stripes, in contrast to Poiseuille stripes, have two weak and
    two strong laminar turbulent interfaces. These differences in symmetry as well
    as in internal growth give rise to two fundamentally different stripe splitting
    mechanisms. In plane-Poiseuille flow splitting is connected to the elongational
    growth of the original stripe, and it results from a break-off/shedding of the
    stripe's tail. In plane-Couette flow splitting follows from a broadening of the
    original stripe and a division along the stripe into two slimmer stripes.
acknowledgement: E.M. acknowledges funding from the ISTplus fellowship programme.
  G.Y. and B.H. acknowledge a grant from the Simons Foundation (662960, BH).
article_number: A21
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Elena
  full_name: Marensi, Elena
  id: 0BE7553A-1004-11EA-B805-18983DDC885E
  last_name: Marensi
  orcid: 0000-0001-7173-4923
- first_name: Gökhan
  full_name: Yalniz, Gökhan
  id: 66E74FA2-D8BF-11E9-8249-8DE2E5697425
  last_name: Yalniz
  orcid: 0000-0002-8490-9312
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Marensi E, Yalniz G, Hof B. Dynamics and proliferation of turbulent stripes
    in plane-Poiseuille and plane-Couette flows. <i>Journal of Fluid Mechanics</i>.
    2023;974. doi:<a href="https://doi.org/10.1017/jfm.2023.780">10.1017/jfm.2023.780</a>
  apa: Marensi, E., Yalniz, G., &#38; Hof, B. (2023). Dynamics and proliferation of
    turbulent stripes in plane-Poiseuille and plane-Couette flows. <i>Journal of Fluid
    Mechanics</i>. Cambridge University Press. <a href="https://doi.org/10.1017/jfm.2023.780">https://doi.org/10.1017/jfm.2023.780</a>
  chicago: Marensi, Elena, Gökhan Yalniz, and Björn Hof. “Dynamics and Proliferation
    of Turbulent Stripes in Plane-Poiseuille and Plane-Couette Flows.” <i>Journal
    of Fluid Mechanics</i>. Cambridge University Press, 2023. <a href="https://doi.org/10.1017/jfm.2023.780">https://doi.org/10.1017/jfm.2023.780</a>.
  ieee: E. Marensi, G. Yalniz, and B. Hof, “Dynamics and proliferation of turbulent
    stripes in plane-Poiseuille and plane-Couette flows,” <i>Journal of Fluid Mechanics</i>,
    vol. 974. Cambridge University Press, 2023.
  ista: Marensi E, Yalniz G, Hof B. 2023. Dynamics and proliferation of turbulent
    stripes in plane-Poiseuille and plane-Couette flows. Journal of Fluid Mechanics.
    974, A21.
  mla: Marensi, Elena, et al. “Dynamics and Proliferation of Turbulent Stripes in
    Plane-Poiseuille and Plane-Couette Flows.” <i>Journal of Fluid Mechanics</i>,
    vol. 974, A21, Cambridge University Press, 2023, doi:<a href="https://doi.org/10.1017/jfm.2023.780">10.1017/jfm.2023.780</a>.
  short: E. Marensi, G. Yalniz, B. Hof, Journal of Fluid Mechanics 974 (2023).
date_created: 2023-10-30T09:32:28Z
date_published: 2023-11-10T00:00:00Z
date_updated: 2024-02-15T09:06:23Z
day: '10'
ddc:
- '530'
department:
- _id: GradSch
- _id: BjHo
doi: 10.1017/jfm.2023.780
external_id:
  arxiv:
  - '2212.12406'
  isi:
  - '001088363700001'
file:
- access_level: open_access
  checksum: 17c64c1fb0d5f73252364bf98b0b9e1a
  content_type: application/pdf
  creator: dernst
  date_created: 2024-02-15T09:05:21Z
  date_updated: 2024-02-15T09:05:21Z
  file_id: '14996'
  file_name: 2023_JourFluidMechanics_Marensi.pdf
  file_size: 2804641
  relation: main_file
  success: 1
file_date_updated: 2024-02-15T09:05:21Z
has_accepted_license: '1'
intvolume: '       974'
isi: 1
keyword:
- turbulence
- transition to turbulence
- patterns
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
project:
- _id: 238598C6-32DE-11EA-91FC-C7463DDC885E
  grant_number: '662960'
  name: 'Revisiting the Turbulence Problem Using Statistical Mechanics: Experimental
    Studies on Transitional and Turbulent Flows'
publication: Journal of Fluid Mechanics
publication_identifier:
  eissn:
  - 1469-7645
  issn:
  - 0022-1120
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
status: public
title: Dynamics and proliferation of turbulent stripes in plane-Poiseuille and plane-Couette
  flows
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 974
year: '2023'
...
---
_id: '14641'
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
- _id: CampIT
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Mike
  full_name: Hennessey-Wesen, Mike
  id: 3F338C72-F248-11E8-B48F-1D18A9856A87
  last_name: Hennessey-Wesen
citation:
  ama: Hennessey-Wesen M. Adaptive mutation in E. coli modulated by luxS. 2023. doi:<a
    href="https://doi.org/10.15479/at:ista:14641">10.15479/at:ista:14641</a>
  apa: Hennessey-Wesen, M. (2023). <i>Adaptive mutation in E. coli modulated by luxS</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:14641">https://doi.org/10.15479/at:ista:14641</a>
  chicago: Hennessey-Wesen, Mike. “Adaptive Mutation in E. Coli Modulated by LuxS.”
    Institute of Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/at:ista:14641">https://doi.org/10.15479/at:ista:14641</a>.
  ieee: M. Hennessey-Wesen, “Adaptive mutation in E. coli modulated by luxS,” Institute
    of Science and Technology Austria, 2023.
  ista: Hennessey-Wesen M. 2023. Adaptive mutation in E. coli modulated by luxS. Institute
    of Science and Technology Austria.
  mla: Hennessey-Wesen, Mike. <i>Adaptive Mutation in E. Coli Modulated by LuxS</i>.
    Institute of Science and Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/at:ista:14641">10.15479/at:ista:14641</a>.
  short: M. Hennessey-Wesen, Adaptive Mutation in E. Coli Modulated by LuxS, Institute
    of Science and Technology Austria, 2023.
date_created: 2023-12-04T13:17:37Z
date_published: 2023-11-30T00:00:00Z
date_updated: 2023-12-07T14:12:25Z
day: '30'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: GradSch
- _id: BjHo
doi: 10.15479/at:ista:14641
ec_funded: 1
file:
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  checksum: 4127c285b34f4bf7fb31ef24f9d14c25
  content_type: application/vnd.oasis.opendocument.text
  creator: mhenness
  date_created: 2023-12-06T13:13:26Z
  date_updated: 2023-12-06T13:13:26Z
  file_id: '14648'
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  checksum: f5203a61eddaf35235bbc51904d73982
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  creator: mhenness
  date_created: 2023-12-06T13:14:15Z
  date_updated: 2023-12-06T13:14:15Z
  embargo: 2024-11-30
  embargo_to: open_access
  file_id: '14649'
  file_name: mike_thesis_v06-12-2023.pdf
  file_size: 21282155
  relation: main_file
file_date_updated: 2023-12-06T13:14:15Z
has_accepted_license: '1'
keyword:
- microfluidics
- miceobiology
- mutations
- quorum sensing
language:
- iso: eng
month: '11'
oa_version: Published Version
page: '104'
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication_identifier:
  issn:
  - 2663 - 337X
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
title: Adaptive mutation in E. coli modulated by luxS
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2023'
...
---
_id: '14754'
abstract:
- lang: eng
  text: The large-scale laminar/turbulent spiral patterns that appear in the linearly
    unstable regime of counter-rotating Taylor–Couette flow are investigated from
    a statistical perspective by means of direct numerical simulation. Unlike the
    vast majority of previous numerical studies, we analyse the flow in periodic parallelogram-annular
    domains, following a coordinate change that aligns one of the parallelogram sides
    with the spiral pattern. The domain size, shape and spatial resolution have been
    varied and the results compared with those in a sufficiently large computational
    orthogonal domain with natural axial and azimuthal periodicity. We find that a
    minimal parallelogram of the right tilt significantly reduces the computational
    cost without notably compromising the statistical properties of the supercritical
    turbulent spiral. Its mean structure, obtained from extremely long time integrations
    in a co-rotating reference frame using the method of slices, bears remarkable
    similarity with the turbulent stripes observed in plane Couette flow, the centrifugal
    instability playing only a secondary role.
acknowledgement: K.D.’s research was supported by Australian Research Council Discovery
  Early Career Researcher Award (DE170100171). B.W., R.A., F.M. and A.M. research
  was supported by the Spanish Ministerio de Economía y Competitividad (grant nos.
  FIS2016-77849-R and FIS2017-85794-P) and Ministerio de Ciencia e Innovación (grant
  no. PID2020-114043GB-I00) and the Generalitat de Catalunya (grant no. 2017-SGR-785).
  B.W.’s research was also supported by the Chinese Scholarship Council (grant CSC
  no. 201806440152). F.M. is a Serra-Húnter Fellow.
article_number: '0112'
article_processing_charge: No
article_type: original
author:
- first_name: B.
  full_name: Wang, B.
  last_name: Wang
- first_name: F.
  full_name: Mellibovsky, F.
  last_name: Mellibovsky
- first_name: Roger
  full_name: Ayats López, Roger
  id: ab77522d-073b-11ed-8aff-e71b39258362
  last_name: Ayats López
  orcid: 0000-0001-6572-0621
- first_name: K.
  full_name: Deguchi, K.
  last_name: Deguchi
- first_name: A.
  full_name: Meseguer, A.
  last_name: Meseguer
citation:
  ama: Wang B, Mellibovsky F, Ayats López R, Deguchi K, Meseguer A. Mean structure
    of the supercritical turbulent spiral in Taylor–Couette flow. <i>Philosophical
    Transactions of the Royal Society A</i>. 2023;381(2246). doi:<a href="https://doi.org/10.1098/rsta.2022.0112">10.1098/rsta.2022.0112</a>
  apa: Wang, B., Mellibovsky, F., Ayats López, R., Deguchi, K., &#38; Meseguer, A.
    (2023). Mean structure of the supercritical turbulent spiral in Taylor–Couette
    flow. <i>Philosophical Transactions of the Royal Society A</i>. The Royal Society.
    <a href="https://doi.org/10.1098/rsta.2022.0112">https://doi.org/10.1098/rsta.2022.0112</a>
  chicago: Wang, B., F. Mellibovsky, Roger Ayats López, K. Deguchi, and A. Meseguer.
    “Mean Structure of the Supercritical Turbulent Spiral in Taylor–Couette Flow.”
    <i>Philosophical Transactions of the Royal Society A</i>. The Royal Society, 2023.
    <a href="https://doi.org/10.1098/rsta.2022.0112">https://doi.org/10.1098/rsta.2022.0112</a>.
  ieee: B. Wang, F. Mellibovsky, R. Ayats López, K. Deguchi, and A. Meseguer, “Mean
    structure of the supercritical turbulent spiral in Taylor–Couette flow,” <i>Philosophical
    Transactions of the Royal Society A</i>, vol. 381, no. 2246. The Royal Society,
    2023.
  ista: Wang B, Mellibovsky F, Ayats López R, Deguchi K, Meseguer A. 2023. Mean structure
    of the supercritical turbulent spiral in Taylor–Couette flow. Philosophical Transactions
    of the Royal Society A. 381(2246), 0112.
  mla: Wang, B., et al. “Mean Structure of the Supercritical Turbulent Spiral in Taylor–Couette
    Flow.” <i>Philosophical Transactions of the Royal Society A</i>, vol. 381, no.
    2246, 0112, The Royal Society, 2023, doi:<a href="https://doi.org/10.1098/rsta.2022.0112">10.1098/rsta.2022.0112</a>.
  short: B. Wang, F. Mellibovsky, R. Ayats López, K. Deguchi, A. Meseguer, Philosophical
    Transactions of the Royal Society A 381 (2023).
date_created: 2024-01-08T13:11:45Z
date_published: 2023-05-01T00:00:00Z
date_updated: 2024-01-09T09:15:29Z
day: '01'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1098/rsta.2022.0112
external_id:
  pmid:
  - '36907214'
file:
- access_level: open_access
  checksum: 1978d126c0ce2f47c22ac20107cc0106
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-09T09:13:53Z
  date_updated: 2024-01-09T09:13:53Z
  file_id: '14763'
  file_name: 2023_PhilTransactionsA_Wang_accepted.pdf
  file_size: 6421086
  relation: main_file
  success: 1
file_date_updated: 2024-01-09T09:13:53Z
has_accepted_license: '1'
intvolume: '       381'
issue: '2246'
keyword:
- General Physics and Astronomy
- General Engineering
- General Mathematics
language:
- iso: eng
month: '05'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: Philosophical Transactions of the Royal Society A
publication_identifier:
  eissn:
  - 1471-2962
  issn:
  - 1364-503X
publication_status: published
publisher: The Royal Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mean structure of the supercritical turbulent spiral in Taylor–Couette flow
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 381
year: '2023'
...
---
_id: '13274'
abstract:
- lang: eng
  text: Viscous flows through pipes and channels are steady and ordered until, with
    increasing velocity, the laminar motion catastrophically breaks down and gives
    way to turbulence. How this apparently discontinuous change from low- to high-dimensional
    motion can be rationalized within the framework of the Navier-Stokes equations
    is not well understood. Exploiting geometrical properties of transitional channel
    flow we trace turbulence to far lower Reynolds numbers (Re) than previously possible
    and identify the complete path that reversibly links fully turbulent motion to
    an invariant solution. This precursor of turbulence destabilizes rapidly with
    Re, and the accompanying explosive increase in attractor dimension effectively
    marks the transition between deterministic and de facto stochastic dynamics.
acknowledgement: We thank Baofang Song as well as the developers of Channelflow for
  sharing their numerical codes, and Mukund Vasudevan and Holger Kantz for fruitful
  discussions. This work was supported by a grant from the Simons Foundation (662960,
  B. H.).
article_number: '034002'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Chaitanya S
  full_name: Paranjape, Chaitanya S
  id: 3D85B7C4-F248-11E8-B48F-1D18A9856A87
  last_name: Paranjape
- first_name: Gökhan
  full_name: Yalniz, Gökhan
  id: 66E74FA2-D8BF-11E9-8249-8DE2E5697425
  last_name: Yalniz
  orcid: 0000-0002-8490-9312
- first_name: Yohann
  full_name: Duguet, Yohann
  last_name: Duguet
- first_name: Nazmi B
  full_name: Budanur, Nazmi B
  id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
  last_name: Budanur
  orcid: 0000-0003-0423-5010
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Paranjape CS, Yalniz G, Duguet Y, Budanur NB, Hof B. Direct path from turbulence
    to time-periodic solutions. <i>Physical Review Letters</i>. 2023;131(3). doi:<a
    href="https://doi.org/10.1103/physrevlett.131.034002">10.1103/physrevlett.131.034002</a>
  apa: Paranjape, C. S., Yalniz, G., Duguet, Y., Budanur, N. B., &#38; Hof, B. (2023).
    Direct path from turbulence to time-periodic solutions. <i>Physical Review Letters</i>.
    American Physical Society. <a href="https://doi.org/10.1103/physrevlett.131.034002">https://doi.org/10.1103/physrevlett.131.034002</a>
  chicago: Paranjape, Chaitanya S, Gökhan Yalniz, Yohann Duguet, Nazmi B Budanur,
    and Björn Hof. “Direct Path from Turbulence to Time-Periodic Solutions.” <i>Physical
    Review Letters</i>. American Physical Society, 2023. <a href="https://doi.org/10.1103/physrevlett.131.034002">https://doi.org/10.1103/physrevlett.131.034002</a>.
  ieee: C. S. Paranjape, G. Yalniz, Y. Duguet, N. B. Budanur, and B. Hof, “Direct
    path from turbulence to time-periodic solutions,” <i>Physical Review Letters</i>,
    vol. 131, no. 3. American Physical Society, 2023.
  ista: Paranjape CS, Yalniz G, Duguet Y, Budanur NB, Hof B. 2023. Direct path from
    turbulence to time-periodic solutions. Physical Review Letters. 131(3), 034002.
  mla: Paranjape, Chaitanya S., et al. “Direct Path from Turbulence to Time-Periodic
    Solutions.” <i>Physical Review Letters</i>, vol. 131, no. 3, 034002, American
    Physical Society, 2023, doi:<a href="https://doi.org/10.1103/physrevlett.131.034002">10.1103/physrevlett.131.034002</a>.
  short: C.S. Paranjape, G. Yalniz, Y. Duguet, N.B. Budanur, B. Hof, Physical Review
    Letters 131 (2023).
date_created: 2023-07-24T09:43:59Z
date_published: 2023-07-21T00:00:00Z
date_updated: 2023-12-13T11:40:19Z
day: '21'
department:
- _id: GradSch
- _id: BjHo
doi: 10.1103/physrevlett.131.034002
external_id:
  arxiv:
  - '2306.05098'
  isi:
  - '001052929900004'
intvolume: '       131'
isi: 1
issue: '3'
keyword:
- General Physics and Astronomy
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2306.05098
month: '07'
oa: 1
oa_version: Preprint
project:
- _id: 238598C6-32DE-11EA-91FC-C7463DDC885E
  grant_number: '662960'
  name: 'Revisiting the Turbulence Problem Using Statistical Mechanics: Experimental
    Studies on Transitional and Turbulent Flows'
publication: Physical Review Letters
publication_identifier:
  eissn:
  - 1079-7114
  issn:
  - 0031-9007
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Direct path from turbulence to time-periodic solutions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 131
year: '2023'
...
---
_id: '12105'
abstract:
- lang: eng
  text: Data-driven dimensionality reduction methods such as proper orthogonal decomposition
    and dynamic mode decomposition have proven to be useful for exploring complex
    phenomena within fluid dynamics and beyond. A well-known challenge for these techniques
    is posed by the continuous symmetries, e.g. translations and rotations, of the
    system under consideration, as drifts in the data dominate the modal expansions
    without providing an insight into the dynamics of the problem. In the present
    study, we address this issue for fluid flows in rectangular channels by formulating
    a continuous symmetry reduction method that eliminates the translations in the
    streamwise and spanwise directions simultaneously. We demonstrate our method by
    computing the symmetry-reduced dynamic mode decomposition (SRDMD) of sliding windows
    of data obtained from the transitional plane-Couette and turbulent plane-Poiseuille
    flow simulations. In the former setting, SRDMD captures the dynamics in the vicinity
    of the invariant solutions with translation symmetries, i.e. travelling waves
    and relative periodic orbits, whereas in the latter, our calculations reveal episodes
    of turbulent time evolution that can be approximated by a low-dimensional linear
    expansion.
acknowledgement: "E.M. acknowledges funding from the ISTplus fellowship programme.
  G.Y. and B.H. acknowledge\r\na grant from the Simons Foundation (662960, BH)."
article_number: A10
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Elena
  full_name: Marensi, Elena
  id: 0BE7553A-1004-11EA-B805-18983DDC885E
  last_name: Marensi
- first_name: Gökhan
  full_name: Yalniz, Gökhan
  id: 66E74FA2-D8BF-11E9-8249-8DE2E5697425
  last_name: Yalniz
  orcid: 0000-0002-8490-9312
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
- first_name: Nazmi B
  full_name: Budanur, Nazmi B
  id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
  last_name: Budanur
  orcid: 0000-0003-0423-5010
citation:
  ama: Marensi E, Yalniz G, Hof B, Budanur NB. Symmetry-reduced dynamic mode decomposition
    of near-wall turbulence. <i>Journal of Fluid Mechanics</i>. 2023;954. doi:<a href="https://doi.org/10.1017/jfm.2022.1001">10.1017/jfm.2022.1001</a>
  apa: Marensi, E., Yalniz, G., Hof, B., &#38; Budanur, N. B. (2023). Symmetry-reduced
    dynamic mode decomposition of near-wall turbulence. <i>Journal of Fluid Mechanics</i>.
    Cambridge University Press. <a href="https://doi.org/10.1017/jfm.2022.1001">https://doi.org/10.1017/jfm.2022.1001</a>
  chicago: Marensi, Elena, Gökhan Yalniz, Björn Hof, and Nazmi B Budanur. “Symmetry-Reduced
    Dynamic Mode Decomposition of near-Wall Turbulence.” <i>Journal of Fluid Mechanics</i>.
    Cambridge University Press, 2023. <a href="https://doi.org/10.1017/jfm.2022.1001">https://doi.org/10.1017/jfm.2022.1001</a>.
  ieee: E. Marensi, G. Yalniz, B. Hof, and N. B. Budanur, “Symmetry-reduced dynamic
    mode decomposition of near-wall turbulence,” <i>Journal of Fluid Mechanics</i>,
    vol. 954. Cambridge University Press, 2023.
  ista: Marensi E, Yalniz G, Hof B, Budanur NB. 2023. Symmetry-reduced dynamic mode
    decomposition of near-wall turbulence. Journal of Fluid Mechanics. 954, A10.
  mla: Marensi, Elena, et al. “Symmetry-Reduced Dynamic Mode Decomposition of near-Wall
    Turbulence.” <i>Journal of Fluid Mechanics</i>, vol. 954, A10, Cambridge University
    Press, 2023, doi:<a href="https://doi.org/10.1017/jfm.2022.1001">10.1017/jfm.2022.1001</a>.
  short: E. Marensi, G. Yalniz, B. Hof, N.B. Budanur, Journal of Fluid Mechanics 954
    (2023).
date_created: 2023-01-08T23:00:53Z
date_published: 2023-01-10T00:00:00Z
date_updated: 2023-08-01T12:53:23Z
day: '10'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1017/jfm.2022.1001
external_id:
  arxiv:
  - '2101.07516'
  isi:
  - '000903336600001'
file:
- access_level: open_access
  checksum: 9224f987caefe5dd85a70814d3cce65c
  content_type: application/pdf
  creator: dernst
  date_created: 2023-02-02T12:34:54Z
  date_updated: 2023-02-02T12:34:54Z
  file_id: '12489'
  file_name: 2023_JourFluidMechanics_Marensi.pdf
  file_size: 1931647
  relation: main_file
  success: 1
file_date_updated: 2023-02-02T12:34:54Z
has_accepted_license: '1'
intvolume: '       954'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 238598C6-32DE-11EA-91FC-C7463DDC885E
  grant_number: '662960'
  name: 'Revisiting the Turbulence Problem Using Statistical Mechanics: Experimental
    Studies on Transitional and Turbulent Flows'
publication: Journal of Fluid Mechanics
publication_identifier:
  eissn:
  - 1469-7645
  issn:
  - 0022-1120
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Symmetry-reduced dynamic mode decomposition of near-wall turbulence
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 954
year: '2023'
...
---
_id: '12165'
abstract:
- lang: eng
  text: It may come as a surprise that a phenomenon as ubiquitous and prominent as
    the transition from laminar to turbulent flow has resisted combined efforts by
    physicists, engineers and mathematicians, and remained unresolved for almost one
    and a half centuries. In recent years, various studies have proposed analogies
    to directed percolation, a well-known universality class in statistical mechanics,
    which describes a non-equilibrium phase transition from a fluctuating active phase
    into an absorbing state. It is this unlikely relation between the multiscale,
    high-dimensional dynamics that signify the transition process in virtually all
    flows of practical relevance, and the arguably most basic non-equilibrium phase
    transition, that so far has mainly been the subject of model studies, which I
    review in this Perspective.
article_processing_charge: No
article_type: original
author:
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Hof B. Directed percolation and the transition to turbulence. <i>Nature Reviews
    Physics</i>. 2023;5:62-72. doi:<a href="https://doi.org/10.1038/s42254-022-00539-y">10.1038/s42254-022-00539-y</a>
  apa: Hof, B. (2023). Directed percolation and the transition to turbulence. <i>Nature
    Reviews Physics</i>. Springer Nature. <a href="https://doi.org/10.1038/s42254-022-00539-y">https://doi.org/10.1038/s42254-022-00539-y</a>
  chicago: Hof, Björn. “Directed Percolation and the Transition to Turbulence.” <i>Nature
    Reviews Physics</i>. Springer Nature, 2023. <a href="https://doi.org/10.1038/s42254-022-00539-y">https://doi.org/10.1038/s42254-022-00539-y</a>.
  ieee: B. Hof, “Directed percolation and the transition to turbulence,” <i>Nature
    Reviews Physics</i>, vol. 5. Springer Nature, pp. 62–72, 2023.
  ista: Hof B. 2023. Directed percolation and the transition to turbulence. Nature
    Reviews Physics. 5, 62–72.
  mla: Hof, Björn. “Directed Percolation and the Transition to Turbulence.” <i>Nature
    Reviews Physics</i>, vol. 5, Springer Nature, 2023, pp. 62–72, doi:<a href="https://doi.org/10.1038/s42254-022-00539-y">10.1038/s42254-022-00539-y</a>.
  short: B. Hof, Nature Reviews Physics 5 (2023) 62–72.
date_created: 2023-01-12T12:10:18Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2023-08-01T12:50:48Z
day: '01'
department:
- _id: BjHo
doi: 10.1038/s42254-022-00539-y
external_id:
  isi:
  - '000890148700002'
intvolume: '         5'
isi: 1
keyword:
- General Physics and Astronomy
language:
- iso: eng
month: '01'
oa_version: None
page: 62-72
publication: Nature Reviews Physics
publication_identifier:
  eissn:
  - 2522-5820
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Directed percolation and the transition to turbulence
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 5
year: '2023'
...
---
_id: '12172'
abstract:
- lang: eng
  text: In industrial reactors and equipment, non-ideality is quite a common phenomenon
    rather than an exception. These deviations from ideality impact the process's
    overall efficiency and the effectiveness of the equipment. To recognize the associated
    non-ideality, one needs to have enough understanding of the formulation of the
    equations and in-depth knowledge of the residence time distribution (RTD) data
    of real reactors. In the current work, step input and pulse input were used to
    create RTD data for Cascade continuous stirred tank reactors (CSTRs). For the
    aforementioned configuration, experiments were run at various flow rates to validate
    the developed characteristic equations. To produce RTD data, distilled water was
    utilized as the flowing fluid, and NaOH was the tracer substance. The ideal behavior
    of tracer concentration exits age distribution, and cumulative fraction for each
    setup and each input was plotted and experimental results were compared with perfect
    behavior. Deviation of concentration exit age distribution and cumulative fractional
    distribution from ideal behavior is more in pulse input as compared to a step
    input. For ideal cases, the exit age distribution curve and cumulative fraction
    curves are independent of the type of input. But a significant difference was
    observed for the two cases, which may be due to non-measurable fluctuations in
    volumetric flow rate, non-achievement of instant injection of tracer in case of
    pulse input, and slight variations in the sampling period. Further, with increasing
    flow rate, concentration, exit age, and cumulative fractional curves shifted upward,
    and this behavior matches with the actual case.
article_processing_charge: No
article_type: original
author:
- first_name: Bushra
  full_name: Khatoon, Bushra
  last_name: Khatoon
- first_name: Shoaib
  full_name: Kamil, Shoaib
  id: 185a19af-dc7d-11ea-9b2f-8eb2201959e9
  last_name: Kamil
- first_name: Hitesh
  full_name: Babu, Hitesh
  last_name: Babu
- first_name: M.
  full_name: Siraj Alam, M.
  last_name: Siraj Alam
citation:
  ama: 'Khatoon B, Kamil S, Babu H, Siraj Alam M. Experimental analysis of Cascade
    CSTRs with step and pulse inputs. <i>Materials Today: Proceedings</i>. 2023;78(Part
    1):40-47. doi:<a href="https://doi.org/10.1016/j.matpr.2022.11.037">10.1016/j.matpr.2022.11.037</a>'
  apa: 'Khatoon, B., Kamil, S., Babu, H., &#38; Siraj Alam, M. (2023). Experimental
    analysis of Cascade CSTRs with step and pulse inputs. <i>Materials Today: Proceedings</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.matpr.2022.11.037">https://doi.org/10.1016/j.matpr.2022.11.037</a>'
  chicago: 'Khatoon, Bushra, Shoaib Kamil, Hitesh Babu, and M. Siraj Alam. “Experimental
    Analysis of Cascade CSTRs with Step and Pulse Inputs.” <i>Materials Today: Proceedings</i>.
    Elsevier, 2023. <a href="https://doi.org/10.1016/j.matpr.2022.11.037">https://doi.org/10.1016/j.matpr.2022.11.037</a>.'
  ieee: 'B. Khatoon, S. Kamil, H. Babu, and M. Siraj Alam, “Experimental analysis
    of Cascade CSTRs with step and pulse inputs,” <i>Materials Today: Proceedings</i>,
    vol. 78, no. Part 1. Elsevier, pp. 40–47, 2023.'
  ista: 'Khatoon B, Kamil S, Babu H, Siraj Alam M. 2023. Experimental analysis of
    Cascade CSTRs with step and pulse inputs. Materials Today: Proceedings. 78(Part
    1), 40–47.'
  mla: 'Khatoon, Bushra, et al. “Experimental Analysis of Cascade CSTRs with Step
    and Pulse Inputs.” <i>Materials Today: Proceedings</i>, vol. 78, no. Part 1, Elsevier,
    2023, pp. 40–47, doi:<a href="https://doi.org/10.1016/j.matpr.2022.11.037">10.1016/j.matpr.2022.11.037</a>.'
  short: 'B. Khatoon, S. Kamil, H. Babu, M. Siraj Alam, Materials Today: Proceedings
    78 (2023) 40–47.'
date_created: 2023-01-12T12:11:26Z
date_published: 2023-03-20T00:00:00Z
date_updated: 2023-08-16T09:08:11Z
day: '20'
department:
- _id: BjHo
doi: 10.1016/j.matpr.2022.11.037
intvolume: '        78'
issue: Part 1
keyword:
- General Medicine
language:
- iso: eng
month: '03'
oa_version: None
page: 40-47
publication: 'Materials Today: Proceedings'
publication_identifier:
  issn:
  - 2214-7853
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Experimental analysis of Cascade CSTRs with step and pulse inputs
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 78
year: '2023'
...
---
_id: '12681'
abstract:
- lang: eng
  text: The dissolution of minute concentration of polymers in wall-bounded flows
    is well-known for its unparalleled ability to reduce turbulent friction drag.
    Another phenomenon, elasto-inertial turbulence (EIT), has been far less studied
    even though elastic instabilities have already been observed in dilute polymer
    solutions before the discovery of polymer drag reduction. EIT is a chaotic state
    driven by polymer dynamics that is observed across many orders of magnitude in
    Reynolds number. It involves energy transfer from small elastic scales to large
    flow scales. The investigation of the mechanisms of EIT offers the possibility
    to better understand other complex phenomena such as elastic turbulence and maximum
    drag reduction. In this review, we survey recent research efforts that are advancing
    the understanding of the dynamics of EIT. We highlight the fundamental differences
    between EIT and Newtonian/inertial turbulence from the perspective of experiments,
    numerical simulations, instabilities, and coherent structures. Finally, we discuss
    the possible links between EIT and elastic turbulence and polymer drag reduction,
    as well as the remaining challenges in unraveling the self-sustaining mechanism
    of EIT.
acknowledgement: Part of the material presented here is based upon work supported
  by the National Science Foundation CBET (Chemical, Bioengineering, Environmental
  and Transport Systems) award 1805636 (to Y.D.), the Binational Science Foundation
  award 2016145 (to Y.D. and Victor Steinberg), a FRIA (Fund for Research Training
  in Industry and Agriculture) grant of the Belgian F.R.S.-FNRS (National Fund for
  Scientific Research) (to V.E.T.), the Marie Curie FP7 Career Integration grant PCIG10-GA-2011-304073
  (to V.E.T.), and the Fonds spéciaux pour la recherche grant C-13/19 of the University
  of Liege (to V.E.T.). Computational resources have been provided by the Consortium
  des Équipements de Calcul Intensif (CECI) funded by the Belgian F.R.S.-FNRS, the
  Vermont Advanced Computing Center (VACC), the Partnership for Advanced Computing
  in Europe (PRACE), and the Tier-1 supercomputer of the Fédération Wallonie-Bruxelles
  funded by the Walloon Region (grant agreement 117545).
article_processing_charge: No
article_type: original
author:
- first_name: Yves
  full_name: Dubief, Yves
  last_name: Dubief
- first_name: Vincent E.
  full_name: Terrapon, Vincent E.
  last_name: Terrapon
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Dubief Y, Terrapon VE, Hof B. Elasto-inertial turbulence. <i>Annual Review
    of Fluid Mechanics</i>. 2023;55(1):675-705. doi:<a href="https://doi.org/10.1146/annurev-fluid-032822-025933">10.1146/annurev-fluid-032822-025933</a>
  apa: Dubief, Y., Terrapon, V. E., &#38; Hof, B. (2023). Elasto-inertial turbulence.
    <i>Annual Review of Fluid Mechanics</i>. Annual Reviews. <a href="https://doi.org/10.1146/annurev-fluid-032822-025933">https://doi.org/10.1146/annurev-fluid-032822-025933</a>
  chicago: Dubief, Yves, Vincent E. Terrapon, and Björn Hof. “Elasto-Inertial Turbulence.”
    <i>Annual Review of Fluid Mechanics</i>. Annual Reviews, 2023. <a href="https://doi.org/10.1146/annurev-fluid-032822-025933">https://doi.org/10.1146/annurev-fluid-032822-025933</a>.
  ieee: Y. Dubief, V. E. Terrapon, and B. Hof, “Elasto-inertial turbulence,” <i>Annual
    Review of Fluid Mechanics</i>, vol. 55, no. 1. Annual Reviews, pp. 675–705, 2023.
  ista: Dubief Y, Terrapon VE, Hof B. 2023. Elasto-inertial turbulence. Annual Review
    of Fluid Mechanics. 55(1), 675–705.
  mla: Dubief, Yves, et al. “Elasto-Inertial Turbulence.” <i>Annual Review of Fluid
    Mechanics</i>, vol. 55, no. 1, Annual Reviews, 2023, pp. 675–705, doi:<a href="https://doi.org/10.1146/annurev-fluid-032822-025933">10.1146/annurev-fluid-032822-025933</a>.
  short: Y. Dubief, V.E. Terrapon, B. Hof, Annual Review of Fluid Mechanics 55 (2023)
    675–705.
date_created: 2023-02-26T23:01:01Z
date_published: 2023-01-19T00:00:00Z
date_updated: 2023-08-01T13:19:47Z
day: '19'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1146/annurev-fluid-032822-025933
external_id:
  isi:
  - '000915418100026'
file:
- access_level: open_access
  checksum: 2666aa3af2a25252d35eb8681d3edff7
  content_type: application/pdf
  creator: dernst
  date_created: 2023-02-27T09:23:02Z
  date_updated: 2023-02-27T09:23:02Z
  file_id: '12690'
  file_name: 2023_AnnReviewFluidMech_Dubief.pdf
  file_size: 4036706
  relation: main_file
  success: 1
file_date_updated: 2023-02-27T09:23:02Z
has_accepted_license: '1'
intvolume: '        55'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 675-705
publication: Annual Review of Fluid Mechanics
publication_identifier:
  eissn:
  - 1545-4479
  issn:
  - 0066-4189
publication_status: published
publisher: Annual Reviews
quality_controlled: '1'
scopus_import: '1'
status: public
title: Elasto-inertial turbulence
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 55
year: '2023'
...
---
_id: '12682'
abstract:
- lang: eng
  text: 'Since the seminal studies by Osborne Reynolds in the nineteenth century,
    pipe flow has served as a primary prototype for investigating the transition to
    turbulence in wall-bounded flows. Despite the apparent simplicity of this flow,
    various facets of this problem have occupied researchers for more than a century.
    Here we review insights from three distinct perspectives: (a) stability and susceptibility
    of laminar flow, (b) phase transition and spatiotemporal dynamics, and (c) dynamical
    systems analysis of the Navier—Stokes equations. We show how these perspectives
    have led to a profound understanding of the onset of turbulence in pipe flow.
    Outstanding open points, applications to flows of complex fluids, and similarities
    with other wall-bounded flows are discussed.'
acknowledgement: 'The authors are very grateful to Laurette Tuckerman for her helpful
  comments. This work was supported by grants from the Simons Foundation (grant numbers
  662985, D.B., and 662960, B.H.) and the Priority Programme “SPP 1881: Turbulent
  Superstructures” of the Deutsche Forschungsgemeinschaft (grant number AV120/3-2
  to M.A.).'
article_processing_charge: No
article_type: original
author:
- first_name: Marc
  full_name: Avila, Marc
  last_name: Avila
- first_name: Dwight
  full_name: Barkley, Dwight
  last_name: Barkley
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Avila M, Barkley D, Hof B. Transition to turbulence in pipe flow. <i>Annual
    Review of Fluid Mechanics</i>. 2023;55:575-602. doi:<a href="https://doi.org/10.1146/annurev-fluid-120720-025957">10.1146/annurev-fluid-120720-025957</a>
  apa: Avila, M., Barkley, D., &#38; Hof, B. (2023). Transition to turbulence in pipe
    flow. <i>Annual Review of Fluid Mechanics</i>. Annual Reviews. <a href="https://doi.org/10.1146/annurev-fluid-120720-025957">https://doi.org/10.1146/annurev-fluid-120720-025957</a>
  chicago: Avila, Marc, Dwight Barkley, and Björn Hof. “Transition to Turbulence in
    Pipe Flow.” <i>Annual Review of Fluid Mechanics</i>. Annual Reviews, 2023. <a
    href="https://doi.org/10.1146/annurev-fluid-120720-025957">https://doi.org/10.1146/annurev-fluid-120720-025957</a>.
  ieee: M. Avila, D. Barkley, and B. Hof, “Transition to turbulence in pipe flow,”
    <i>Annual Review of Fluid Mechanics</i>, vol. 55. Annual Reviews, pp. 575–602,
    2023.
  ista: Avila M, Barkley D, Hof B. 2023. Transition to turbulence in pipe flow. Annual
    Review of Fluid Mechanics. 55, 575–602.
  mla: Avila, Marc, et al. “Transition to Turbulence in Pipe Flow.” <i>Annual Review
    of Fluid Mechanics</i>, vol. 55, Annual Reviews, 2023, pp. 575–602, doi:<a href="https://doi.org/10.1146/annurev-fluid-120720-025957">10.1146/annurev-fluid-120720-025957</a>.
  short: M. Avila, D. Barkley, B. Hof, Annual Review of Fluid Mechanics 55 (2023)
    575–602.
date_created: 2023-02-26T23:01:01Z
date_published: 2023-01-19T00:00:00Z
date_updated: 2023-08-01T13:20:30Z
day: '19'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1146/annurev-fluid-120720-025957
external_id:
  isi:
  - '000915418100023'
file:
- access_level: open_access
  checksum: f99ef30f76cabc9e5e1946b380c16db4
  content_type: application/pdf
  creator: dernst
  date_created: 2023-02-27T09:35:52Z
  date_updated: 2023-02-27T09:35:52Z
  file_id: '12691'
  file_name: 2023_AnnReviewFluidMech_Avila.pdf
  file_size: 4769537
  relation: main_file
  success: 1
file_date_updated: 2023-02-27T09:35:52Z
has_accepted_license: '1'
intvolume: '        55'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 575-602
project:
- _id: 238598C6-32DE-11EA-91FC-C7463DDC885E
  grant_number: '662960'
  name: 'Revisiting the Turbulence Problem Using Statistical Mechanics: Experimental
    Studies on Transitional and Turbulent Flows'
publication: Annual Review of Fluid Mechanics
publication_identifier:
  issn:
  - 0066-4189
publication_status: published
publisher: Annual Reviews
quality_controlled: '1'
scopus_import: '1'
status: public
title: Transition to turbulence in pipe flow
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 55
year: '2023'
...
---
_id: '12726'
abstract:
- lang: eng
  text: "Most motions of many-body systems at any scale in nature with sufficient
    degrees\r\nof freedom tend to be chaotic; reaching from the orbital motion of
    planets, the air\r\ncurrents in our atmosphere, down to the water flowing through
    our pipelines or\r\nthe movement of a population of bacteria. To the observer
    it is therefore intriguing\r\nwhen a moving collective exhibits order. Collective
    motion of flocks of birds, schools\r\nof fish or swarms of self-propelled particles
    or robots have been studied extensively\r\nover the past decades but the mechanisms
    involved in the transition from chaos to\r\norder remain unclear. Here, the interactions,
    that in most systems give rise to chaos,\r\nsustain order. In this thesis we investigate
    mechanisms that preserve, destabilize\r\nor lead to the ordered state. We show
    that endothelial cells migrating in circular\r\nconfinements transition to a collective
    rotating state and concomitantly synchronize\r\nthe frequencies of nucleating
    actin waves within individual cells. Consequently,\r\nthe frequency dependent
    cell migration speed uniformizes across the population.\r\nComplementary to the
    WAVE dependent nucleation of traveling actin waves, we\r\nshow that in leukocytes
    the actin polymerization depending on WASp generates\r\npushing forces locally
    at stationary patches. Next, in pipe flows, we study methods\r\nto disrupt the
    self–sustaining cycle of turbulence and therefore relaminarize the\r\nflow. While
    we find in pulsating flow conditions that turbulence emerges through a\r\nhelical
    instability during the decelerating phase. Finally, we show quantitatively in\r\nbrain
    slices of mice that wild-type control neurons can compensate the migratory\r\ndeficits
    of a genetically modified neuronal sub–population in the developing cortex."
acknowledged_ssus:
- _id: M-Shop
- _id: Bio
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Michael
  full_name: Riedl, Michael
  id: 3BE60946-F248-11E8-B48F-1D18A9856A87
  last_name: Riedl
  orcid: 0000-0003-4844-6311
citation:
  ama: Riedl M. Synchronization in collectively moving active matter. 2023. doi:<a
    href="https://doi.org/10.15479/at:ista:12726">10.15479/at:ista:12726</a>
  apa: Riedl, M. (2023). <i>Synchronization in collectively moving active matter</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:12726">https://doi.org/10.15479/at:ista:12726</a>
  chicago: Riedl, Michael. “Synchronization in Collectively Moving Active Matter.”
    Institute of Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/at:ista:12726">https://doi.org/10.15479/at:ista:12726</a>.
  ieee: M. Riedl, “Synchronization in collectively moving active matter,” Institute
    of Science and Technology Austria, 2023.
  ista: Riedl M. 2023. Synchronization in collectively moving active matter. Institute
    of Science and Technology Austria.
  mla: Riedl, Michael. <i>Synchronization in Collectively Moving Active Matter</i>.
    Institute of Science and Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/at:ista:12726">10.15479/at:ista:12726</a>.
  short: M. Riedl, Synchronization in Collectively Moving Active Matter, Institute
    of Science and Technology Austria, 2023.
date_created: 2023-03-15T13:22:13Z
date_published: 2023-03-23T00:00:00Z
date_updated: 2023-11-30T10:55:13Z
day: '23'
ddc:
- '530'
degree_awarded: PhD
department:
- _id: GradSch
- _id: BjHo
doi: 10.15479/at:ista:12726
file:
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  creator: cchlebak
  date_created: 2023-03-23T12:49:23Z
  date_updated: 2023-11-24T11:57:46Z
  description: the main file is missing the bibliography. See new thesis record 14530
    for updated files.
  file_id: '12745'
  file_name: Thesis_Riedl_2023.pdf
  file_size: 63734746
  relation: main_file
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  checksum: 0eb7b650cc8ae843bcec7c8a6109ae03
  content_type: application/octet-stream
  creator: cchlebak
  date_created: 2023-03-23T12:54:34Z
  date_updated: 2023-09-24T22:30:03Z
  embargo_to: open_access
  file_id: '12746'
  file_name: Thesis_Riedl_2023_source.rar
  file_size: 339473651
  relation: source_file
file_date_updated: 2023-11-24T11:57:46Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa_version: None
page: '260'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '10703'
    relation: part_of_dissertation
    status: public
  - id: '10791'
    relation: part_of_dissertation
    status: public
  - id: '7932'
    relation: part_of_dissertation
    status: public
  - id: '461'
    relation: part_of_dissertation
    status: public
  - id: '14530'
    relation: new_edition
    status: public
status: public
supervisor:
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
title: Synchronization in collectively moving active matter
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2023'
...
---
_id: '10703'
abstract:
- lang: eng
  text: 'When crawling through the body, leukocytes often traverse tissues that are
    densely packed with extracellular matrix and other cells, and this raises the
    question: How do leukocytes overcome compressive mechanical loads? Here, we show
    that the actin cortex of leukocytes is mechanoresponsive and that this responsiveness
    requires neither force sensing via the nucleus nor adhesive interactions with
    a substrate. Upon global compression of the cell body as well as local indentation
    of the plasma membrane, Wiskott-Aldrich syndrome protein (WASp) assembles into
    dot-like structures, providing activation platforms for Arp2/3 nucleated actin
    patches. These patches locally push against the external load, which can be obstructing
    collagen fibers or other cells, and thereby create space to facilitate forward
    locomotion. We show in vitro and in vivo that this WASp function is rate limiting
    for ameboid leukocyte migration in dense but not in loose environments and is
    required for trafficking through diverse tissues such as skin and lymph nodes.'
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
- _id: EM-Fac
acknowledgement: We thank N. Darwish-Miranda, F. Leite, F.P. Assen, and A. Eichner
  for advice and help with experiments. We thank J. Renkawitz, E. Kiermaier, A. Juanes
  Garcia, and M. Avellaneda for critical reading of the manuscript. We thank M. Driscoll
  for advice on fluorescent labeling of collagen gels. This research was supported
  by the Scientific Service Units (SSUs) of IST Austria through resources provided
  by Molecular Biology Services/Lab Support Facility (LSF)/Bioimaging Facility/Electron
  Microscopy Facility. This work was funded by grants from the European Research Council
  ( CoG 724373 ) and the Austrian Science Foundation (FWF) to M.S. F.G. received funding
  from the European Union’s Horizon 2020 research and innovation program under the
  Marie Skłodowska-Curie grant agreement no. 747687.
article_processing_charge: No
article_type: original
author:
- first_name: Florian
  full_name: Gaertner, Florian
  last_name: Gaertner
- first_name: Patricia
  full_name: Reis-Rodrigues, Patricia
  last_name: Reis-Rodrigues
- first_name: Ingrid
  full_name: De Vries, Ingrid
  id: 4C7D837E-F248-11E8-B48F-1D18A9856A87
  last_name: De Vries
- first_name: Miroslav
  full_name: Hons, Miroslav
  id: 4167FE56-F248-11E8-B48F-1D18A9856A87
  last_name: Hons
  orcid: 0000-0002-6625-3348
- first_name: Juan
  full_name: Aguilera, Juan
  last_name: Aguilera
- first_name: Michael
  full_name: Riedl, Michael
  id: 3BE60946-F248-11E8-B48F-1D18A9856A87
  last_name: Riedl
  orcid: 0000-0003-4844-6311
- first_name: Alexander F
  full_name: Leithner, Alexander F
  id: 3B1B77E4-F248-11E8-B48F-1D18A9856A87
  last_name: Leithner
  orcid: 0000-0002-1073-744X
- first_name: Saren
  full_name: Tasciyan, Saren
  id: 4323B49C-F248-11E8-B48F-1D18A9856A87
  last_name: Tasciyan
  orcid: 0000-0003-1671-393X
- first_name: Aglaja
  full_name: Kopf, Aglaja
  id: 31DAC7B6-F248-11E8-B48F-1D18A9856A87
  last_name: Kopf
  orcid: 0000-0002-2187-6656
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
- first_name: Vanessa
  full_name: Zheden, Vanessa
  id: 39C5A68A-F248-11E8-B48F-1D18A9856A87
  last_name: Zheden
  orcid: 0000-0002-9438-4783
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Gaertner F, Reis-Rodrigues P, de Vries I, et al. WASp triggers mechanosensitive
    actin patches to facilitate immune cell migration in dense tissues. <i>Developmental
    Cell</i>. 2022;57(1):47-62.e9. doi:<a href="https://doi.org/10.1016/j.devcel.2021.11.024">10.1016/j.devcel.2021.11.024</a>
  apa: Gaertner, F., Reis-Rodrigues, P., de Vries, I., Hons, M., Aguilera, J., Riedl,
    M., … Sixt, M. K. (2022). WASp triggers mechanosensitive actin patches to facilitate
    immune cell migration in dense tissues. <i>Developmental Cell</i>. Cell Press ;
    Elsevier. <a href="https://doi.org/10.1016/j.devcel.2021.11.024">https://doi.org/10.1016/j.devcel.2021.11.024</a>
  chicago: Gaertner, Florian, Patricia Reis-Rodrigues, Ingrid de Vries, Miroslav Hons,
    Juan Aguilera, Michael Riedl, Alexander F Leithner, et al. “WASp Triggers Mechanosensitive
    Actin Patches to Facilitate Immune Cell Migration in Dense Tissues.” <i>Developmental
    Cell</i>. Cell Press ; Elsevier, 2022. <a href="https://doi.org/10.1016/j.devcel.2021.11.024">https://doi.org/10.1016/j.devcel.2021.11.024</a>.
  ieee: F. Gaertner <i>et al.</i>, “WASp triggers mechanosensitive actin patches to
    facilitate immune cell migration in dense tissues,” <i>Developmental Cell</i>,
    vol. 57, no. 1. Cell Press ; Elsevier, p. 47–62.e9, 2022.
  ista: Gaertner F, Reis-Rodrigues P, de Vries I, Hons M, Aguilera J, Riedl M, Leithner
    AF, Tasciyan S, Kopf A, Merrin J, Zheden V, Kaufmann W, Hauschild R, Sixt MK.
    2022. WASp triggers mechanosensitive actin patches to facilitate immune cell migration
    in dense tissues. Developmental Cell. 57(1), 47–62.e9.
  mla: Gaertner, Florian, et al. “WASp Triggers Mechanosensitive Actin Patches to
    Facilitate Immune Cell Migration in Dense Tissues.” <i>Developmental Cell</i>,
    vol. 57, no. 1, Cell Press ; Elsevier, 2022, p. 47–62.e9, doi:<a href="https://doi.org/10.1016/j.devcel.2021.11.024">10.1016/j.devcel.2021.11.024</a>.
  short: F. Gaertner, P. Reis-Rodrigues, I. de Vries, M. Hons, J. Aguilera, M. Riedl,
    A.F. Leithner, S. Tasciyan, A. Kopf, J. Merrin, V. Zheden, W. Kaufmann, R. Hauschild,
    M.K. Sixt, Developmental Cell 57 (2022) 47–62.e9.
date_created: 2022-01-30T23:01:33Z
date_published: 2022-01-10T00:00:00Z
date_updated: 2024-03-25T23:30:12Z
day: '10'
ddc:
- '570'
department:
- _id: MiSi
- _id: EM-Fac
- _id: NanoFab
- _id: BjHo
doi: 10.1016/j.devcel.2021.11.024
ec_funded: 1
external_id:
  isi:
  - '000768933800005'
  pmid:
  - '34919802'
intvolume: '        57'
isi: 1
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
main_file_link:
- open_access: '1'
  url: https://www.sciencedirect.com/science/article/pii/S1534580721009497
month: '01'
oa: 1
oa_version: Published Version
page: 47-62.e9
pmid: 1
project:
- _id: 260AA4E2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '747687'
  name: Mechanical Adaptation of Lamellipodial Actin Networks in Migrating Cells
- _id: 25FE9508-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '724373'
  name: Cellular navigation along spatial gradients
publication: Developmental Cell
publication_identifier:
  eissn:
  - 1878-1551
  issn:
  - 1534-5807
publication_status: published
publisher: Cell Press ; Elsevier
quality_controlled: '1'
related_material:
  record:
  - id: '12726'
    relation: dissertation_contains
    status: public
  - id: '14530'
    relation: dissertation_contains
    status: public
  - id: '12401'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: WASp triggers mechanosensitive actin patches to facilitate immune cell migration
  in dense tissues
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 57
year: '2022'
...
---
_id: '10791'
abstract:
- lang: eng
  text: The mammalian neocortex is composed of diverse neuronal and glial cell classes
    that broadly arrange in six distinct laminae. Cortical layers emerge during development
    and defects in the developmental programs that orchestrate cortical lamination
    are associated with neurodevelopmental diseases. The developmental principle of
    cortical layer formation depends on concerted radial projection neuron migration,
    from their birthplace to their final target position. Radial migration occurs
    in defined sequential steps, regulated by a large array of signaling pathways.
    However, based on genetic loss-of-function experiments, most studies have thus
    far focused on the role of cell-autonomous gene function. Yet, cortical neuron
    migration in situ is a complex process and migrating neurons traverse along diverse
    cellular compartments and environments. The role of tissue-wide properties and
    genetic state in radial neuron migration is however not clear. Here we utilized
    mosaic analysis with double markers (MADM) technology to either sparsely or globally
    delete gene function, followed by quantitative single-cell phenotyping. The MADM-based
    gene ablation paradigms in combination with computational modeling demonstrated
    that global tissue-wide effects predominate cell-autonomous gene function albeit
    in a gene-specific manner. Our results thus suggest that the genetic landscape
    in a tissue critically affects the overall migration phenotype of individual cortical
    projection neurons. In a broader context, our findings imply that global tissue-wide
    effects represent an essential component of the underlying etiology associated
    with focal malformations of cortical development in particular, and neurological
    diseases in general.
acknowledged_ssus:
- _id: LifeSc
- _id: PreCl
- _id: Bio
acknowledgement: "A.H.H. was a recipient of a DOC Fellowship (24812) of the Austrian
  Academy of Sciences. This work also received support from IST Austria institutional
  funds; the People Programme (Marie Curie Actions) of the European Union’s Seventh
  Framework Programme (FP7/2007–2013) under REA grant agreement No 618444 to S.H.\r\nAPC
  funding was obtained by IST Austria institutional funds.\r\nWe thank A. Sommer and
  C. Czepe (VBCF GmbH, NGS Unit), L. Andersen, J. Sonntag and J. Renno for technical
  support and/or initial experiments; M. Sixt, J. Nimpf and all members of the Hippenmeyer
  lab for discussion. This research was supported by the Scientific Service Units
  of IST Austria through resources provided by the Imaging and Optics Facility, Lab
  Support Facility and Preclinical Facility."
article_number: kvac009
article_processing_charge: No
article_type: original
author:
- first_name: Andi H
  full_name: Hansen, Andi H
  id: 38853E16-F248-11E8-B48F-1D18A9856A87
  last_name: Hansen
- first_name: Florian
  full_name: Pauler, Florian
  id: 48EA0138-F248-11E8-B48F-1D18A9856A87
  last_name: Pauler
  orcid: 0000-0002-7462-0048
- first_name: Michael
  full_name: Riedl, Michael
  id: 3BE60946-F248-11E8-B48F-1D18A9856A87
  last_name: Riedl
  orcid: 0000-0003-4844-6311
- first_name: Carmen
  full_name: Streicher, Carmen
  id: 36BCB99C-F248-11E8-B48F-1D18A9856A87
  last_name: Streicher
- first_name: Anna-Magdalena
  full_name: Heger, Anna-Magdalena
  id: 4B76FFD2-F248-11E8-B48F-1D18A9856A87
  last_name: Heger
- first_name: Susanne
  full_name: Laukoter, Susanne
  id: 2D6B7A9A-F248-11E8-B48F-1D18A9856A87
  last_name: Laukoter
  orcid: 0000-0002-7903-3010
- first_name: Christoph M
  full_name: Sommer, Christoph M
  id: 4DF26D8C-F248-11E8-B48F-1D18A9856A87
  last_name: Sommer
  orcid: 0000-0003-1216-9105
- first_name: Armel
  full_name: Nicolas, Armel
  id: 2A103192-F248-11E8-B48F-1D18A9856A87
  last_name: Nicolas
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
- first_name: Li Huei
  full_name: Tsai, Li Huei
  last_name: Tsai
- first_name: Thomas
  full_name: Rülicke, Thomas
  last_name: Rülicke
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Hansen AH, Pauler F, Riedl M, et al. Tissue-wide effects override cell-intrinsic
    gene function in radial neuron migration. <i>Oxford Open Neuroscience</i>. 2022;1(1).
    doi:<a href="https://doi.org/10.1093/oons/kvac009">10.1093/oons/kvac009</a>
  apa: Hansen, A. H., Pauler, F., Riedl, M., Streicher, C., Heger, A.-M., Laukoter,
    S., … Hippenmeyer, S. (2022). Tissue-wide effects override cell-intrinsic gene
    function in radial neuron migration. <i>Oxford Open Neuroscience</i>. Oxford Academic.
    <a href="https://doi.org/10.1093/oons/kvac009">https://doi.org/10.1093/oons/kvac009</a>
  chicago: Hansen, Andi H, Florian Pauler, Michael Riedl, Carmen Streicher, Anna-Magdalena
    Heger, Susanne Laukoter, Christoph M Sommer, et al. “Tissue-Wide Effects Override
    Cell-Intrinsic Gene Function in Radial Neuron Migration.” <i>Oxford Open Neuroscience</i>.
    Oxford Academic, 2022. <a href="https://doi.org/10.1093/oons/kvac009">https://doi.org/10.1093/oons/kvac009</a>.
  ieee: A. H. Hansen <i>et al.</i>, “Tissue-wide effects override cell-intrinsic gene
    function in radial neuron migration,” <i>Oxford Open Neuroscience</i>, vol. 1,
    no. 1. Oxford Academic, 2022.
  ista: Hansen AH, Pauler F, Riedl M, Streicher C, Heger A-M, Laukoter S, Sommer CM,
    Nicolas A, Hof B, Tsai LH, Rülicke T, Hippenmeyer S. 2022. Tissue-wide effects
    override cell-intrinsic gene function in radial neuron migration. Oxford Open
    Neuroscience. 1(1), kvac009.
  mla: Hansen, Andi H., et al. “Tissue-Wide Effects Override Cell-Intrinsic Gene Function
    in Radial Neuron Migration.” <i>Oxford Open Neuroscience</i>, vol. 1, no. 1, kvac009,
    Oxford Academic, 2022, doi:<a href="https://doi.org/10.1093/oons/kvac009">10.1093/oons/kvac009</a>.
  short: A.H. Hansen, F. Pauler, M. Riedl, C. Streicher, A.-M. Heger, S. Laukoter,
    C.M. Sommer, A. Nicolas, B. Hof, L.H. Tsai, T. Rülicke, S. Hippenmeyer, Oxford
    Open Neuroscience 1 (2022).
date_created: 2022-02-25T07:52:11Z
date_published: 2022-07-07T00:00:00Z
date_updated: 2023-11-30T10:55:12Z
day: '07'
ddc:
- '570'
department:
- _id: SiHi
- _id: BjHo
- _id: LifeSc
- _id: EM-Fac
doi: 10.1093/oons/kvac009
ec_funded: 1
file:
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  checksum: 822e76e056c07099d1fb27d1ece5941b
  content_type: application/pdf
  creator: dernst
  date_created: 2023-08-16T08:00:30Z
  date_updated: 2023-08-16T08:00:30Z
  file_id: '14061'
  file_name: 2023_OxfordOpenNeuroscience_Hansen.pdf
  file_size: 4846551
  relation: main_file
  success: 1
file_date_updated: 2023-08-16T08:00:30Z
has_accepted_license: '1'
intvolume: '         1'
issue: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 25D61E48-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '618444'
  name: Molecular Mechanisms of Cerebral Cortex Development
- _id: 2625A13E-B435-11E9-9278-68D0E5697425
  grant_number: '24812'
  name: Molecular Mechanisms of Radial Neuronal Migration
publication: Oxford Open Neuroscience
publication_identifier:
  eissn:
  - 2753-149X
publication_status: published
publisher: Oxford Academic
quality_controlled: '1'
related_material:
  record:
  - id: '12726'
    relation: dissertation_contains
    status: public
  - id: '14530'
    relation: dissertation_contains
    status: public
status: public
title: Tissue-wide effects override cell-intrinsic gene function in radial neuron
  migration
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2022'
...
---
_id: '10820'
abstract:
- lang: eng
  text: Streaky structures in the boundary layers are often generated by surface roughness
    elements and/or free-stream turbulence, and are known to have significant effects
    on boundary-layer instability. In this paper, we investigate the impact of two
    forms of streaks on the instability of supersonic boundary layers. The first concerns
    the streaks generated by an array of spanwise periodic and streamwise elongated
    surface roughness elements, and our interest is how these streaks influence the
    lower-branch viscous first modes, whose characteristic wavelength and frequency
    are on the classical triple-deck scales. By adapting the triple-deck theory in
    the incompressible regime to the supersonic one, we first derived a simplified
    system which allows for efficient calculation of the streaks. The asymptotic analysis
    simplifies a bi-global eigenvalue problem to a one-dimensional problem in the
    spanwise direction, showing that the instability is controlled at leading order
    solely by the spanwise-dependent wall shear. In the fundamental configuration,
    the streaks stabilize first modes at low frequencies but destabilize the high-frequency
    ones. In the subharmonic configuration, the streaks generally destabilize the
    first mode across the entire frequency band. Importantly, the spanwise even modes
    are of radiating nature, i.e. they emit acoustic waves spontaneously to the far
    field. Streaks of the second form are generated by low-frequency vortical disturbances
    representing free-stream turbulence. They alter the flow in the entire layer and
    their effects on instability are investigated by solving the inviscid bi-global
    eigenvalue problem. Different from the incompressible case, a multitude of compressible
    instability modes exists, of which the dominant mode is an inviscid instability
    associated with the spanwise shear. In addition, there exists a separate branch
    of instability modes that have smaller growth rates but are spontaneously radiating.
acknowledgement: The work is supported by the National Key Research and Development
  Program of China (No. 2016YFA0401200), the National Natural Science Foundation of
  China (Grant Nos. 91952202 and 11402167).
article_processing_charge: No
author:
- first_name: Jianxin
  full_name: Liu, Jianxin
  last_name: Liu
- first_name: Elena
  full_name: Marensi, Elena
  id: 0BE7553A-1004-11EA-B805-18983DDC885E
  last_name: Marensi
- first_name: Xuesong
  full_name: Wu, Xuesong
  last_name: Wu
citation:
  ama: 'Liu J, Marensi E, Wu X. Effects of streaky structures on the instability of
    supersonic boundary layers. In: Sherwin S, Schmid P, Wu X, eds. <i>IUTAM Laminar-Turbulent
    Transition</i>. Vol 38. 1st ed. IUTAM Bookseries. Cham: Springer Nature; 2022:587-598.
    doi:<a href="https://doi.org/10.1007/978-3-030-67902-6_51">10.1007/978-3-030-67902-6_51</a>'
  apa: 'Liu, J., Marensi, E., &#38; Wu, X. (2022). Effects of streaky structures on
    the instability of supersonic boundary layers. In S. Sherwin, P. Schmid, &#38;
    X. Wu (Eds.), <i>IUTAM Laminar-Turbulent Transition</i> (1st ed., Vol. 38, pp.
    587–598). Cham: Springer Nature. <a href="https://doi.org/10.1007/978-3-030-67902-6_51">https://doi.org/10.1007/978-3-030-67902-6_51</a>'
  chicago: 'Liu, Jianxin, Elena Marensi, and Xuesong Wu. “Effects of Streaky Structures
    on the Instability of Supersonic Boundary Layers.” In <i>IUTAM Laminar-Turbulent
    Transition</i>, edited by Spencer Sherwin, Peter Schmid, and Xuesong Wu, 1st ed.,
    38:587–98. IUTAM Bookseries. Cham: Springer Nature, 2022. <a href="https://doi.org/10.1007/978-3-030-67902-6_51">https://doi.org/10.1007/978-3-030-67902-6_51</a>.'
  ieee: 'J. Liu, E. Marensi, and X. Wu, “Effects of streaky structures on the instability
    of supersonic boundary layers,” in <i>IUTAM Laminar-Turbulent Transition</i>,
    1st ed., vol. 38, S. Sherwin, P. Schmid, and X. Wu, Eds. Cham: Springer Nature,
    2022, pp. 587–598.'
  ista: 'Liu J, Marensi E, Wu X. 2022.Effects of streaky structures on the instability
    of supersonic boundary layers. In: IUTAM Laminar-Turbulent Transition. vol. 38,
    587–598.'
  mla: Liu, Jianxin, et al. “Effects of Streaky Structures on the Instability of Supersonic
    Boundary Layers.” <i>IUTAM Laminar-Turbulent Transition</i>, edited by Spencer
    Sherwin et al., 1st ed., vol. 38, Springer Nature, 2022, pp. 587–98, doi:<a href="https://doi.org/10.1007/978-3-030-67902-6_51">10.1007/978-3-030-67902-6_51</a>.
  short: J. Liu, E. Marensi, X. Wu, in:, S. Sherwin, P. Schmid, X. Wu (Eds.), IUTAM
    Laminar-Turbulent Transition, 1st ed., Springer Nature, Cham, 2022, pp. 587–598.
conference:
  end_date: 2019-09-06
  location: London, United Kingdom
  name: IUTAM Symposium
  start_date: 2019-09-02
date_created: 2022-03-04T09:14:34Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2023-08-03T12:54:59Z
day: '01'
department:
- _id: BjHo
doi: 10.1007/978-3-030-67902-6_51
edition: '1'
editor:
- first_name: Spencer
  full_name: Sherwin, Spencer
  last_name: Sherwin
- first_name: Peter
  full_name: Schmid, Peter
  last_name: Schmid
- first_name: Xuesong
  full_name: Wu, Xuesong
  last_name: Wu
external_id:
  isi:
  - '000709087600051'
intvolume: '        38'
isi: 1
language:
- iso: eng
month: '01'
oa_version: None
page: 587-598
place: Cham
publication: IUTAM Laminar-Turbulent Transition
publication_identifier:
  eisbn:
  - '9783030679026'
  eissn:
  - 1875-3493
  isbn:
  - '9783030679019'
  issn:
  - 1875-3507
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: IUTAM Bookseries
status: public
title: Effects of streaky structures on the instability of supersonic boundary layers
type: book_chapter
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 38
year: '2022'
...
---
_id: '11704'
abstract:
- lang: eng
  text: In Fall 2020, several European countries reported rapid increases in COVID-19
    cases along with growing estimates of the effective reproduction rates. Such an
    acceleration in epidemic spread is usually attributed to time-dependent effects,
    e.g. human travel, seasonal behavioral changes, mutations of the pathogen etc.
    In this case however the acceleration occurred when counter measures such as testing
    and contact tracing exceeded their capacity limit. Considering Austria as an example,
    here we show that this dynamics can be captured by a time-independent, i.e. autonomous,
    compartmental model that incorporates these capacity limits. In this model, the
    epidemic acceleration coincides with the exhaustion of mitigation efforts, resulting
    in an increasing fraction of undetected cases that drive the effective reproduction
    rate progressively higher. We demonstrate that standard models which does not
    include this effect necessarily result in a systematic underestimation of the
    effective reproduction rate.
article_number: e0269975
article_processing_charge: No
article_type: original
author:
- first_name: Nazmi B
  full_name: Budanur, Nazmi B
  id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
  last_name: Budanur
  orcid: 0000-0003-0423-5010
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Budanur NB, Hof B. An autonomous compartmental model for accelerating epidemics.
    <i>PLoS ONE</i>. 2022;17(7). doi:<a href="https://doi.org/10.1371/journal.pone.0269975">10.1371/journal.pone.0269975</a>
  apa: Budanur, N. B., &#38; Hof, B. (2022). An autonomous compartmental model for
    accelerating epidemics. <i>PLoS ONE</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0269975">https://doi.org/10.1371/journal.pone.0269975</a>
  chicago: Budanur, Nazmi B, and Björn Hof. “An Autonomous Compartmental Model for
    Accelerating Epidemics.” <i>PLoS ONE</i>. Public Library of Science, 2022. <a
    href="https://doi.org/10.1371/journal.pone.0269975">https://doi.org/10.1371/journal.pone.0269975</a>.
  ieee: N. B. Budanur and B. Hof, “An autonomous compartmental model for accelerating
    epidemics,” <i>PLoS ONE</i>, vol. 17, no. 7. Public Library of Science, 2022.
  ista: Budanur NB, Hof B. 2022. An autonomous compartmental model for accelerating
    epidemics. PLoS ONE. 17(7), e0269975.
  mla: Budanur, Nazmi B., and Björn Hof. “An Autonomous Compartmental Model for Accelerating
    Epidemics.” <i>PLoS ONE</i>, vol. 17, no. 7, e0269975, Public Library of Science,
    2022, doi:<a href="https://doi.org/10.1371/journal.pone.0269975">10.1371/journal.pone.0269975</a>.
  short: N.B. Budanur, B. Hof, PLoS ONE 17 (2022).
date_created: 2022-07-31T22:01:48Z
date_published: 2022-07-18T00:00:00Z
date_updated: 2023-08-03T12:24:22Z
day: '18'
ddc:
- '510'
department:
- _id: BjHo
doi: 10.1371/journal.pone.0269975
external_id:
  isi:
  - '000911392100055'
file:
- access_level: open_access
  checksum: 1ddd9b91e6dec31ab0e7a8433ca2d452
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-01T08:02:38Z
  date_updated: 2022-08-01T08:02:38Z
  file_id: '11712'
  file_name: 2022_PLoSONE_Budanur.pdf
  file_size: 1421256
  relation: main_file
  success: 1
file_date_updated: 2022-08-01T08:02:38Z
has_accepted_license: '1'
intvolume: '        17'
isi: 1
issue: '7'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: PLoS ONE
publication_identifier:
  eissn:
  - 1932-6203
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
related_material:
  record:
  - id: '11711'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: An autonomous compartmental model for accelerating epidemics
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 17
year: '2022'
...
---
_id: '11711'
abstract:
- lang: eng
  text: Codes and data for reproducing the results of N. B. Budanur and B. Hof "An
    autonomous compartmental model for accelerating epidemics"
article_processing_charge: No
author:
- first_name: Nazmi B
  full_name: Budanur, Nazmi B
  id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
  last_name: Budanur
  orcid: 0000-0003-0423-5010
citation:
  ama: Budanur NB. burakbudanur/autoacc-public. 2022. doi:<a href="https://doi.org/10.5281/ZENODO.6802720">10.5281/ZENODO.6802720</a>
  apa: Budanur, N. B. (2022). burakbudanur/autoacc-public. Zenodo. <a href="https://doi.org/10.5281/ZENODO.6802720">https://doi.org/10.5281/ZENODO.6802720</a>
  chicago: Budanur, Nazmi B. “Burakbudanur/Autoacc-Public.” Zenodo, 2022. <a href="https://doi.org/10.5281/ZENODO.6802720">https://doi.org/10.5281/ZENODO.6802720</a>.
  ieee: N. B. Budanur, “burakbudanur/autoacc-public.” Zenodo, 2022.
  ista: Budanur NB. 2022. burakbudanur/autoacc-public, Zenodo, <a href="https://doi.org/10.5281/ZENODO.6802720">10.5281/ZENODO.6802720</a>.
  mla: Budanur, Nazmi B. <i>Burakbudanur/Autoacc-Public</i>. Zenodo, 2022, doi:<a
    href="https://doi.org/10.5281/ZENODO.6802720">10.5281/ZENODO.6802720</a>.
  short: N.B. Budanur, (2022).
date_created: 2022-08-01T08:06:33Z
date_published: 2022-07-06T00:00:00Z
date_updated: 2023-08-03T12:24:21Z
day: '06'
ddc:
- '000'
department:
- _id: BjHo
doi: 10.5281/ZENODO.6802720
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/ZENODO.6802720
month: '07'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '11704'
    relation: used_in_publication
    status: public
status: public
title: burakbudanur/autoacc-public
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2022'
...
---
_id: '10654'
abstract:
- lang: eng
  text: "Directed percolation (DP) has recently emerged as a possible solution to
    the century old puzzle surrounding the transition to turbulence. Multiple model
    studies reported DP exponents, however, experimental evidence is limited since
    the largest possible observation times are orders of magnitude shorter than the
    flows’ characteristic timescales. An exception is cylindrical Couette flow where
    the limit is not temporal, but rather the realizable system size. We present experiments
    in a Couette setup of unprecedented azimuthal and axial aspect ratios. Approaching
    the critical point to within less than 0.1% we determine five critical exponents,
    all of which are in excellent agreement with the 2+1D DP universality class. The
    complex dynamics encountered at \r\nthe onset of turbulence can hence be fully
    rationalized within the framework of statistical mechanics."
acknowledged_ssus:
- _id: M-Shop
acknowledgement: "We thank T.Menner, T.Asenov, P. Maier and the Miba machine shop
  of IST Austria for their valuable support in all technical aspects. We thank Marc
  Avila for comments on the manuscript. This work was supported by a grant from the
  Simons Foundation (662960, B.H.). We acknowledge the European Research Council under
  the European Union’s Seventh Framework Programme (FP/2007-2013)/ERC Grant Agreement
  306589 for financial support. K.A.\r\nacknowledges funding from the Central Research
  Development Fund of the University of Bremen, grant number ZF04B /2019/FB04 Avila
  Kerstin (”Independent Project for Postdocs”). L.K. was supported by the European
  Union’s Horizon 2020 Research and innovation programme under the Marie Sklodowska-Curie
  grant agreement  No. 754411.\r\n"
article_number: '014502'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Lukasz
  full_name: Klotz, Lukasz
  id: 2C9AF1C2-F248-11E8-B48F-1D18A9856A87
  last_name: Klotz
  orcid: 0000-0003-1740-7635
- first_name: Grégoire M
  full_name: Lemoult, Grégoire M
  id: 4787FE80-F248-11E8-B48F-1D18A9856A87
  last_name: Lemoult
- first_name: Kerstin
  full_name: Avila, Kerstin
  last_name: Avila
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Klotz L, Lemoult GM, Avila K, Hof B. Phase transition to turbulence in spatially
    extended shear flows. <i>Physical Review Letters</i>. 2022;128(1). doi:<a href="https://doi.org/10.1103/PhysRevLett.128.014502">10.1103/PhysRevLett.128.014502</a>
  apa: Klotz, L., Lemoult, G. M., Avila, K., &#38; Hof, B. (2022). Phase transition
    to turbulence in spatially extended shear flows. <i>Physical Review Letters</i>.
    American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.128.014502">https://doi.org/10.1103/PhysRevLett.128.014502</a>
  chicago: Klotz, Lukasz, Grégoire M Lemoult, Kerstin Avila, and Björn Hof. “Phase
    Transition to Turbulence in Spatially Extended Shear Flows.” <i>Physical Review
    Letters</i>. American Physical Society, 2022. <a href="https://doi.org/10.1103/PhysRevLett.128.014502">https://doi.org/10.1103/PhysRevLett.128.014502</a>.
  ieee: L. Klotz, G. M. Lemoult, K. Avila, and B. Hof, “Phase transition to turbulence
    in spatially extended shear flows,” <i>Physical Review Letters</i>, vol. 128,
    no. 1. American Physical Society, 2022.
  ista: Klotz L, Lemoult GM, Avila K, Hof B. 2022. Phase transition to turbulence
    in spatially extended shear flows. Physical Review Letters. 128(1), 014502.
  mla: Klotz, Lukasz, et al. “Phase Transition to Turbulence in Spatially Extended
    Shear Flows.” <i>Physical Review Letters</i>, vol. 128, no. 1, 014502, American
    Physical Society, 2022, doi:<a href="https://doi.org/10.1103/PhysRevLett.128.014502">10.1103/PhysRevLett.128.014502</a>.
  short: L. Klotz, G.M. Lemoult, K. Avila, B. Hof, Physical Review Letters 128 (2022).
date_created: 2022-01-23T23:01:28Z
date_published: 2022-01-05T00:00:00Z
date_updated: 2023-08-02T13:59:19Z
day: '05'
department:
- _id: BjHo
doi: 10.1103/PhysRevLett.128.014502
ec_funded: 1
external_id:
  arxiv:
  - '2111.14894'
  isi:
  - '000748271700010'
  pmid:
  - '35061458'
intvolume: '       128'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2111.14894
month: '01'
oa: 1
oa_version: Preprint
pmid: 1
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 25152F3A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '306589'
  name: Decoding the complexity of turbulence at its origin
- _id: 238598C6-32DE-11EA-91FC-C7463DDC885E
  grant_number: '662960'
  name: 'Revisiting the Turbulence Problem Using Statistical Mechanics: Experimental
    Studies on Transitional and Turbulent Flows'
publication: Physical Review Letters
publication_identifier:
  eissn:
  - 1079-7114
  issn:
  - 0031-9007
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Phase transition to turbulence in spatially extended shear flows
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 128
year: '2022'
...
---
_id: '12134'
abstract:
- lang: eng
  text: Standard epidemic models exhibit one continuous, second order phase transition
    to macroscopic outbreaks. However, interventions to control outbreaks may fundamentally
    alter epidemic dynamics. Here we reveal how such interventions modify the type
    of phase transition. In particular, we uncover three distinct types of explosive
    phase transitions for epidemic dynamics with capacity-limited interventions. Depending
    on the capacity limit, interventions may (i) leave the standard second order phase
    transition unchanged but exponentially suppress the probability of large outbreaks,
    (ii) induce a first-order discontinuous transition to macroscopic outbreaks, or
    (iii) cause a secondary explosive yet continuous third-order transition. These
    insights highlight inherent limitations in predicting and containing epidemic
    outbreaks. More generally our study offers a cornerstone example of a third-order
    explosive phase transition in complex systems.
acknowledgement: We acknowledge support from the Volkswagen Foundation under Grant
  No. 99720 and the German Federal Ministry for Education and Research (BMBF) under
  Grant No. 16ICR01. This research was supported by the Deutsche Forschungsgemeinschaft
  (DFG, German Research Foundation) under Germany’s Excellence Strategy—EXC-2068—390729961—Cluster
  of Excellence Physics of Life of TU Dresden.
article_number: 04LT02
article_processing_charge: No
article_type: original
author:
- first_name: Georg
  full_name: Börner, Georg
  last_name: Börner
- first_name: Malte
  full_name: Schröder, Malte
  last_name: Schröder
- first_name: Davide
  full_name: Scarselli, Davide
  id: 40315C30-F248-11E8-B48F-1D18A9856A87
  last_name: Scarselli
  orcid: 0000-0001-5227-4271
- first_name: Nazmi B
  full_name: Budanur, Nazmi B
  id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
  last_name: Budanur
  orcid: 0000-0003-0423-5010
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
- first_name: Marc
  full_name: Timme, Marc
  last_name: Timme
citation:
  ama: 'Börner G, Schröder M, Scarselli D, Budanur NB, Hof B, Timme M. Explosive transitions
    in epidemic dynamics. <i>Journal of Physics: Complexity</i>. 2022;3(4). doi:<a
    href="https://doi.org/10.1088/2632-072x/ac99cd">10.1088/2632-072x/ac99cd</a>'
  apa: 'Börner, G., Schröder, M., Scarselli, D., Budanur, N. B., Hof, B., &#38; Timme,
    M. (2022). Explosive transitions in epidemic dynamics. <i>Journal of Physics:
    Complexity</i>. IOP Publishing. <a href="https://doi.org/10.1088/2632-072x/ac99cd">https://doi.org/10.1088/2632-072x/ac99cd</a>'
  chicago: 'Börner, Georg, Malte Schröder, Davide Scarselli, Nazmi B Budanur, Björn
    Hof, and Marc Timme. “Explosive Transitions in Epidemic Dynamics.” <i>Journal
    of Physics: Complexity</i>. IOP Publishing, 2022. <a href="https://doi.org/10.1088/2632-072x/ac99cd">https://doi.org/10.1088/2632-072x/ac99cd</a>.'
  ieee: 'G. Börner, M. Schröder, D. Scarselli, N. B. Budanur, B. Hof, and M. Timme,
    “Explosive transitions in epidemic dynamics,” <i>Journal of Physics: Complexity</i>,
    vol. 3, no. 4. IOP Publishing, 2022.'
  ista: 'Börner G, Schröder M, Scarselli D, Budanur NB, Hof B, Timme M. 2022. Explosive
    transitions in epidemic dynamics. Journal of Physics: Complexity. 3(4), 04LT02.'
  mla: 'Börner, Georg, et al. “Explosive Transitions in Epidemic Dynamics.” <i>Journal
    of Physics: Complexity</i>, vol. 3, no. 4, 04LT02, IOP Publishing, 2022, doi:<a
    href="https://doi.org/10.1088/2632-072x/ac99cd">10.1088/2632-072x/ac99cd</a>.'
  short: 'G. Börner, M. Schröder, D. Scarselli, N.B. Budanur, B. Hof, M. Timme, Journal
    of Physics: Complexity 3 (2022).'
date_created: 2023-01-12T12:03:43Z
date_published: 2022-10-25T00:00:00Z
date_updated: 2023-02-13T09:15:13Z
day: '25'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1088/2632-072x/ac99cd
file:
- access_level: open_access
  checksum: 35c5c5cb0eb17ea1b5184755daab9fc9
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-24T07:24:37Z
  date_updated: 2023-01-24T07:24:37Z
  file_id: '12350'
  file_name: 2022_JourPhysics_Boerner.pdf
  file_size: 1006106
  relation: main_file
  success: 1
file_date_updated: 2023-01-24T07:24:37Z
has_accepted_license: '1'
intvolume: '         3'
issue: '4'
keyword:
- Artificial Intelligence
- Computer Networks and Communications
- Computer Science Applications
- Information Systems
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: 'Journal of Physics: Complexity'
publication_identifier:
  issn:
  - 2632-072X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Explosive transitions in epidemic dynamics
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2022'
...
---
_id: '12137'
abstract:
- lang: eng
  text: We investigate the local self-sustained process underlying spiral turbulence
    in counter-rotating Taylor–Couette flow using a periodic annular domain, shaped
    as a parallelogram, two of whose sides are aligned with the cylindrical helix
    described by the spiral pattern. The primary focus of the study is placed on the
    emergence of drifting–rotating waves (DRW) that capture, in a relatively small
    domain, the main features of coherent structures typically observed in developed
    turbulence. The transitional dynamics of the subcritical region, far below the
    first instability of the laminar circular Couette flow, is determined by the upper
    and lower branches of DRW solutions originated at saddle-node bifurcations. The
    mechanism whereby these solutions self-sustain, and the chaotic dynamics they
    induce, are conspicuously reminiscent of other subcritical shear flows. Remarkably,
    the flow properties of DRW persist even as the Reynolds number is increased beyond
    the linear stability threshold of the base flow. Simulations in a narrow parallelogram
    domain stretched in the azimuthal direction to revolve around the apparatus a
    full turn confirm that self-sustained vortices eventually concentrate into a localised
    pattern. The resulting statistical steady state satisfactorily reproduces qualitatively,
    and to a certain degree also quantitatively, the topology and properties of spiral
    turbulence as calculated in a large periodic domain of sufficient aspect ratio
    that is representative of the real system.
acknowledgement: "K.D.’s research was supported by an Australian Research Council
  Discovery Early Career\r\nResearcher Award (DE170100171). B.W., R.A., F.M. and A.M.
  research was supported by the Spanish Ministerio de Economía y Competitivdad (grant
  numbers FIS2016-77849-R and FIS2017-85794-P) and Ministerio de Ciencia e Innovación
  (grant number PID2020-114043GB-I00) and the Generalitat de Catalunya (grant 2017-SGR-785).
  B.W.’s research was also supported by the Chinese Scholarship Council (grant CSC
  no. 201806440152)."
article_number: A21
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: B.
  full_name: Wang, B.
  last_name: Wang
- first_name: Roger
  full_name: Ayats López, Roger
  id: ab77522d-073b-11ed-8aff-e71b39258362
  last_name: Ayats López
  orcid: 0000-0001-6572-0621
- first_name: K.
  full_name: Deguchi, K.
  last_name: Deguchi
- first_name: F.
  full_name: Mellibovsky, F.
  last_name: Mellibovsky
- first_name: A.
  full_name: Meseguer, A.
  last_name: Meseguer
citation:
  ama: Wang B, Ayats López R, Deguchi K, Mellibovsky F, Meseguer A. Self-sustainment
    of coherent structures in counter-rotating Taylor–Couette flow. <i>Journal of
    Fluid Mechanics</i>. 2022;951. doi:<a href="https://doi.org/10.1017/jfm.2022.828">10.1017/jfm.2022.828</a>
  apa: Wang, B., Ayats López, R., Deguchi, K., Mellibovsky, F., &#38; Meseguer, A.
    (2022). Self-sustainment of coherent structures in counter-rotating Taylor–Couette
    flow. <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href="https://doi.org/10.1017/jfm.2022.828">https://doi.org/10.1017/jfm.2022.828</a>
  chicago: Wang, B., Roger Ayats López, K. Deguchi, F. Mellibovsky, and A. Meseguer.
    “Self-Sustainment of Coherent Structures in Counter-Rotating Taylor–Couette Flow.”
    <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2022. <a href="https://doi.org/10.1017/jfm.2022.828">https://doi.org/10.1017/jfm.2022.828</a>.
  ieee: B. Wang, R. Ayats López, K. Deguchi, F. Mellibovsky, and A. Meseguer, “Self-sustainment
    of coherent structures in counter-rotating Taylor–Couette flow,” <i>Journal of
    Fluid Mechanics</i>, vol. 951. Cambridge University Press, 2022.
  ista: Wang B, Ayats López R, Deguchi K, Mellibovsky F, Meseguer A. 2022. Self-sustainment
    of coherent structures in counter-rotating Taylor–Couette flow. Journal of Fluid
    Mechanics. 951, A21.
  mla: Wang, B., et al. “Self-Sustainment of Coherent Structures in Counter-Rotating
    Taylor–Couette Flow.” <i>Journal of Fluid Mechanics</i>, vol. 951, A21, Cambridge
    University Press, 2022, doi:<a href="https://doi.org/10.1017/jfm.2022.828">10.1017/jfm.2022.828</a>.
  short: B. Wang, R. Ayats López, K. Deguchi, F. Mellibovsky, A. Meseguer, Journal
    of Fluid Mechanics 951 (2022).
date_created: 2023-01-12T12:04:17Z
date_published: 2022-11-07T00:00:00Z
date_updated: 2023-08-04T08:54:16Z
day: '07'
department:
- _id: BjHo
doi: 10.1017/jfm.2022.828
external_id:
  arxiv:
  - '2207.12990'
  isi:
  - '000879446900001'
intvolume: '       951'
isi: 1
keyword:
- Mechanical Engineering
- Mechanics of Materials
- Condensed Matter Physics
- Applied Mathematics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2207.12990'
month: '11'
oa: 1
oa_version: Preprint
publication: Journal of Fluid Mechanics
publication_identifier:
  eissn:
  - 1469-7645
  issn:
  - 0022-1120
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Self-sustainment of coherent structures in counter-rotating Taylor–Couette
  flow
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 951
year: '2022'
...
