---
_id: '11660'
abstract:
- lang: eng
text: 'We characterize critical points of 1-dimensional maps paired in persistent
homology geometrically and this way get elementary proofs of theorems about the
symmetry of persistence diagrams and the variation of such maps. In particular,
we identify branching points and endpoints of networks as the sole source of asymmetry
and relate the cycle basis in persistent homology with a version of the stable
marriage problem. Our analysis provides the foundations of fast algorithms for
maintaining collections of interrelated sorted lists together with their persistence
diagrams. '
acknowledgement: 'This project has received funding from the European Research Council
(ERC) under the European Union’s Horizon 2020 research and innovation programme,
grant no. 788183, from the Wittgenstein Prize, Austrian Science Fund (FWF), grant
no. Z 342-N31, and from the DFG Collaborative Research Center TRR 109, ‘Discretization
in Geometry and Dynamics’, Austrian Science Fund (FWF), grant no. I 02979-N35. '
alternative_title:
- LIPIcs
article_processing_charge: No
author:
- first_name: Ranita
full_name: Biswas, Ranita
id: 3C2B033E-F248-11E8-B48F-1D18A9856A87
last_name: Biswas
orcid: 0000-0002-5372-7890
- first_name: Sebastiano
full_name: Cultrera di Montesano, Sebastiano
id: 34D2A09C-F248-11E8-B48F-1D18A9856A87
last_name: Cultrera di Montesano
orcid: 0000-0001-6249-0832
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Morteza
full_name: Saghafian, Morteza
last_name: Saghafian
citation:
ama: 'Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. A window to
the persistence of 1D maps. I: Geometric characterization of critical point pairs.
LIPIcs.'
apa: 'Biswas, R., Cultrera di Montesano, S., Edelsbrunner, H., & Saghafian,
M. (n.d.). A window to the persistence of 1D maps. I: Geometric characterization
of critical point pairs. LIPIcs. Schloss Dagstuhl - Leibniz-Zentrum für
Informatik.'
chicago: 'Biswas, Ranita, Sebastiano Cultrera di Montesano, Herbert Edelsbrunner,
and Morteza Saghafian. “A Window to the Persistence of 1D Maps. I: Geometric Characterization
of Critical Point Pairs.” LIPIcs. Schloss Dagstuhl - Leibniz-Zentrum für
Informatik, n.d.'
ieee: 'R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, and M. Saghafian, “A
window to the persistence of 1D maps. I: Geometric characterization of critical
point pairs,” LIPIcs. Schloss Dagstuhl - Leibniz-Zentrum für Informatik.'
ista: 'Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. A window
to the persistence of 1D maps. I: Geometric characterization of critical point
pairs. LIPIcs.'
mla: 'Biswas, Ranita, et al. “A Window to the Persistence of 1D Maps. I: Geometric
Characterization of Critical Point Pairs.” LIPIcs, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik.'
short: R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, LIPIcs
(n.d.).
date_created: 2022-07-27T09:31:15Z
date_published: 2022-07-25T00:00:00Z
date_updated: 2022-07-28T08:05:34Z
day: '25'
ddc:
- '510'
department:
- _id: GradSch
- _id: HeEd
ec_funded: 1
file:
- access_level: open_access
checksum: 95903f9d1649e8e437a967b6f2f64730
content_type: application/pdf
creator: scultrer
date_created: 2022-07-27T09:30:30Z
date_updated: 2022-07-27T09:30:30Z
file_id: '11661'
file_name: window 1.pdf
file_size: 564836
relation: main_file
file_date_updated: 2022-07-27T09:30:30Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '788183'
name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z00342
name: The Wittgenstein Prize
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I02979-N35
name: Persistence and stability of geometric complexes
publication: LIPIcs
publication_status: submitted
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
status: public
title: 'A window to the persistence of 1D maps. I: Geometric characterization of critical
point pairs'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '11662'
abstract:
- lang: eng
text: We give a fully dynamic (Las-Vegas style) algorithm with constant expected
amortized time per update that maintains a proper (Δ +1)-vertex coloring of a
graph with maximum degree at most Δ. This improves upon the previous O(log Δ)-time
algorithm by Bhattacharya et al. (SODA 2018). Our algorithm uses an approach based
on assigning random ranks to vertices and does not need to maintain a hierarchical
graph decomposition. We show that our result does not only have optimal running
time but is also optimal in the sense that already deciding whether a Δ-coloring
exists in a dynamically changing graph with maximum degree at most Δ takes Ω (log
n) time per operation.
acknowledgement: We want to thank an anonymous referee who pointed out a mistake in
our conference paper as well as suggesting a fix using an approach in References.
article_number: '16'
article_processing_charge: No
article_type: original
author:
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Pan
full_name: Peng, Pan
last_name: Peng
citation:
ama: Henzinger MH, Peng P. Constant-time Dynamic (Δ +1)-Coloring. ACM Transactions
on Algorithms. 2022;18(2). doi:10.1145/3501403
apa: Henzinger, M. H., & Peng, P. (2022). Constant-time Dynamic (Δ +1)-Coloring.
ACM Transactions on Algorithms. Association for Computing Machinery (ACM).
https://doi.org/10.1145/3501403
chicago: Henzinger, Monika H, and Pan Peng. “Constant-Time Dynamic (Δ +1)-Coloring.”
ACM Transactions on Algorithms. Association for Computing Machinery (ACM),
2022. https://doi.org/10.1145/3501403.
ieee: M. H. Henzinger and P. Peng, “Constant-time Dynamic (Δ +1)-Coloring,” ACM
Transactions on Algorithms, vol. 18, no. 2. Association for Computing Machinery
(ACM), 2022.
ista: Henzinger MH, Peng P. 2022. Constant-time Dynamic (Δ +1)-Coloring. ACM Transactions
on Algorithms. 18(2), 16.
mla: Henzinger, Monika H., and Pan Peng. “Constant-Time Dynamic (Δ +1)-Coloring.”
ACM Transactions on Algorithms, vol. 18, no. 2, 16, Association for Computing
Machinery (ACM), 2022, doi:10.1145/3501403.
short: M.H. Henzinger, P. Peng, ACM Transactions on Algorithms 18 (2022).
date_created: 2022-07-27T10:58:53Z
date_published: 2022-03-04T00:00:00Z
date_updated: 2022-07-27T11:08:13Z
day: '04'
doi: 10.1145/3501403
extern: '1'
intvolume: ' 18'
issue: '2'
language:
- iso: eng
month: '03'
oa_version: None
publication: ACM Transactions on Algorithms
publication_identifier:
eissn:
- 1549-6333
issn:
- 1549-6325
publication_status: published
publisher: Association for Computing Machinery (ACM)
quality_controlled: '1'
scopus_import: '1'
status: public
title: Constant-time Dynamic (Δ +1)-Coloring
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 18
year: '2022'
...
---
_id: '11686'
abstract:
- lang: eng
text: Maternally inherited Wolbachia transinfections are being introduced into natural
mosquito populations to reduce the transmission of dengue, Zika and other arboviruses.
Wolbachia-induced cytoplasmic incompatibility provides a frequency-dependent reproductive
advantage to infected females that can spread transinfections within and among
populations. However, because transinfections generally reduce host fitness, they
tend to spread within populations only after their frequency exceeds a critical
threshold. This produces bistability with stable equilibrium frequencies at both
0 and 1, analogous to the bistability produced by underdominance between alleles
or karyotypes and by population dynamics under Allee effects. Here, we analyze
how stochastic frequency variation produced by finite population size can facilitate
the local spread of variants with bistable dynamics into areas where invasion
is unexpected from deterministic models. Our exemplar is the establishment of
wMel Wolbachia in the Aedes aegypti population of Pyramid Estates (PE), a small
community in far north Queensland, Australia. In 2011, wMel was stably introduced
into Gordonvale, separated from PE by barriers to Ae. aegypti dispersal. After
nearly six years during which wMel was observed only at low frequencies in PE,
corresponding to an apparent equilibrium between immigration and selection, wMel
rose to fixation by 2018. Using analytic approximations and statistical analyses,
we demonstrate that the observed fixation of wMel at PE is consistent with both
stochastic transition past an unstable threshold frequency and deterministic transformation
produced by steady immigration at a rate just above the threshold required for
deterministic invasion. The indeterminacy results from a delicate balance of parameters
needed to produce the delayed transition observed. Our analyses suggest that once
Wolbachia transinfections are established locally through systematic introductions,
stochastic “threshold crossing” is likely to only minimally enhance spatial spread,
providing a local ratchet that slightly – but systematically – aids area-wide
transformation of disease-vector populations in heterogeneous landscapes.
acknowledgement: 'Bill and Melinda Gates Foundation, Award: OPP1180815'
article_processing_charge: No
author:
- first_name: Michael
full_name: Turelli, Michael
last_name: Turelli
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
citation:
ama: 'Turelli M, Barton NH. Wolbachia frequency data from: Why did the Wolbachia
transinfection cross the road? Drift, deterministic dynamics and disease control.
2022. doi:10.25338/B81931'
apa: 'Turelli, M., & Barton, N. H. (2022). Wolbachia frequency data from: Why
did the Wolbachia transinfection cross the road? Drift, deterministic dynamics
and disease control. Dryad. https://doi.org/10.25338/B81931'
chicago: 'Turelli, Michael, and Nicholas H Barton. “Wolbachia Frequency Data from:
Why Did the Wolbachia Transinfection Cross the Road? Drift, Deterministic Dynamics
and Disease Control.” Dryad, 2022. https://doi.org/10.25338/B81931.'
ieee: 'M. Turelli and N. H. Barton, “Wolbachia frequency data from: Why did the
Wolbachia transinfection cross the road? Drift, deterministic dynamics and disease
control.” Dryad, 2022.'
ista: 'Turelli M, Barton NH. 2022. Wolbachia frequency data from: Why did the Wolbachia
transinfection cross the road? Drift, deterministic dynamics and disease control,
Dryad, 10.25338/B81931.'
mla: 'Turelli, Michael, and Nicholas H. Barton. Wolbachia Frequency Data from:
Why Did the Wolbachia Transinfection Cross the Road? Drift, Deterministic Dynamics
and Disease Control. Dryad, 2022, doi:10.25338/B81931.'
short: M. Turelli, N.H. Barton, (2022).
date_created: 2022-07-29T06:45:41Z
date_published: 2022-01-06T00:00:00Z
date_updated: 2023-08-02T13:50:08Z
day: '06'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.25338/B81931
keyword:
- Biological sciences
main_file_link:
- open_access: '1'
url: https://doi.org/10.25338/B81931
month: '01'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
record:
- id: '10604'
relation: used_in_publication
status: public
status: public
title: 'Wolbachia frequency data from: Why did the Wolbachia transinfection cross
the road? Drift, deterministic dynamics and disease control'
tmp:
image: /images/cc_0.png
legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
name: Creative Commons Public Domain Dedication (CC0 1.0)
short: CC0 (1.0)
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2022'
...
---
_id: '11695'
abstract:
- lang: eng
text: 'Data underlying the figures in the publication "The chemistry of Cu3N and
Cu3PdN nanocrystals" '
article_processing_charge: No
author:
- first_name: Mahsa
full_name: Parvizian, Mahsa
last_name: Parvizian
- first_name: Alejandra
full_name: Duran Balsa, Alejandra
last_name: Duran Balsa
- first_name: Rohan
full_name: Pokratath, Rohan
last_name: Pokratath
- first_name: Curran
full_name: Kalha, Curran
last_name: Kalha
- first_name: Seungho
full_name: Lee, Seungho
last_name: Lee
- first_name: Dietger
full_name: Van den Eynden, Dietger
last_name: Van den Eynden
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Anna
full_name: Regoutz, Anna
last_name: Regoutz
- first_name: Jonathan
full_name: De Roo, Jonathan
last_name: De Roo
citation:
ama: Parvizian M, Duran Balsa A, Pokratath R, et al. Data for “The chemistry of
Cu3N and Cu3PdN nanocrystals.” 2022. doi:10.5281/ZENODO.6542908
apa: Parvizian, M., Duran Balsa, A., Pokratath, R., Kalha, C., Lee, S., Van den
Eynden, D., … De Roo, J. (2022). Data for “The chemistry of Cu3N and Cu3PdN nanocrystals.”
Zenodo. https://doi.org/10.5281/ZENODO.6542908
chicago: Parvizian, Mahsa, Alejandra Duran Balsa, Rohan Pokratath, Curran Kalha,
Seungho Lee, Dietger Van den Eynden, Maria Ibáñez, Anna Regoutz, and Jonathan
De Roo. “Data for ‘The Chemistry of Cu3N and Cu3PdN Nanocrystals.’” Zenodo, 2022.
https://doi.org/10.5281/ZENODO.6542908.
ieee: M. Parvizian et al., “Data for ‘The chemistry of Cu3N and Cu3PdN nanocrystals.’”
Zenodo, 2022.
ista: Parvizian M, Duran Balsa A, Pokratath R, Kalha C, Lee S, Van den Eynden D,
Ibáñez M, Regoutz A, De Roo J. 2022. Data for ‘The chemistry of Cu3N and Cu3PdN
nanocrystals’, Zenodo, 10.5281/ZENODO.6542908.
mla: Parvizian, Mahsa, et al. Data for “The Chemistry of Cu3N and Cu3PdN Nanocrystals.”
Zenodo, 2022, doi:10.5281/ZENODO.6542908.
short: M. Parvizian, A. Duran Balsa, R. Pokratath, C. Kalha, S. Lee, D. Van den
Eynden, M. Ibáñez, A. Regoutz, J. De Roo, (2022).
date_created: 2022-07-29T09:31:13Z
date_published: 2022-05-12T00:00:00Z
date_updated: 2023-08-03T07:19:12Z
day: '12'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.5281/ZENODO.6542908
main_file_link:
- open_access: '1'
url: https://doi.org/10.5281/ZENODO.6542908
month: '05'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
record:
- id: '11451'
relation: used_in_publication
status: public
status: public
title: Data for "The chemistry of Cu3N and Cu3PdN nanocrystals"
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2022'
...
---
_id: '11700'
abstract:
- lang: eng
text: This paper contains two contributions in the study of optimal transport on
metric graphs. Firstly, we prove a Benamou–Brenier formula for the Wasserstein
distance, which establishes the equivalence of static and dynamical optimal transport.
Secondly, in the spirit of Jordan–Kinderlehrer–Otto, we show that McKean–Vlasov
equations can be formulated as gradient flow of the free energy in the Wasserstein
space of probability measures. The proofs of these results are based on careful
regularisation arguments to circumvent some of the difficulties arising in metric
graphs, namely, branching of geodesics and the failure of semi-convexity of entropy
functionals in the Wasserstein space.
acknowledgement: "ME acknowledges funding by the Deutsche Forschungsgemeinschaft (DFG),
Grant SFB 1283/2 2021 – 317210226. DF and JM were supported by the European Research
Council (ERC) under the European Union’s Horizon 2020 research and innovation programme
(grant agreement No 716117). JM also acknowledges support by the Austrian Science
Fund (FWF), Project SFB F65. The work of DM was partially supported by the Deutsche
Forschungsgemeinschaft\r\n(DFG), Grant 397230547. This article is based upon work
from COST Action\r\n18232 MAT-DYN-NET, supported by COST (European Cooperation in
Science\r\nand Technology), www.cost.eu. We wish to thank Martin Burger and Jan-Frederik\r\nPietschmann
for useful discussions. We are grateful to the anonymous referees for\r\ntheir careful
reading and useful suggestions."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Matthias
full_name: Erbar, Matthias
last_name: Erbar
- first_name: Dominik L
full_name: Forkert, Dominik L
id: 35C79D68-F248-11E8-B48F-1D18A9856A87
last_name: Forkert
- first_name: Jan
full_name: Maas, Jan
id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
last_name: Maas
orcid: 0000-0002-0845-1338
- first_name: Delio
full_name: Mugnolo, Delio
last_name: Mugnolo
citation:
ama: Erbar M, Forkert DL, Maas J, Mugnolo D. Gradient flow formulation of diffusion
equations in the Wasserstein space over a metric graph. Networks and Heterogeneous
Media. 2022;17(5):687-717. doi:10.3934/nhm.2022023
apa: Erbar, M., Forkert, D. L., Maas, J., & Mugnolo, D. (2022). Gradient flow
formulation of diffusion equations in the Wasserstein space over a metric graph.
Networks and Heterogeneous Media. American Institute of Mathematical Sciences.
https://doi.org/10.3934/nhm.2022023
chicago: Erbar, Matthias, Dominik L Forkert, Jan Maas, and Delio Mugnolo. “Gradient
Flow Formulation of Diffusion Equations in the Wasserstein Space over a Metric
Graph.” Networks and Heterogeneous Media. American Institute of Mathematical
Sciences, 2022. https://doi.org/10.3934/nhm.2022023.
ieee: M. Erbar, D. L. Forkert, J. Maas, and D. Mugnolo, “Gradient flow formulation
of diffusion equations in the Wasserstein space over a metric graph,” Networks
and Heterogeneous Media, vol. 17, no. 5. American Institute of Mathematical
Sciences, pp. 687–717, 2022.
ista: Erbar M, Forkert DL, Maas J, Mugnolo D. 2022. Gradient flow formulation of
diffusion equations in the Wasserstein space over a metric graph. Networks and
Heterogeneous Media. 17(5), 687–717.
mla: Erbar, Matthias, et al. “Gradient Flow Formulation of Diffusion Equations in
the Wasserstein Space over a Metric Graph.” Networks and Heterogeneous Media,
vol. 17, no. 5, American Institute of Mathematical Sciences, 2022, pp. 687–717,
doi:10.3934/nhm.2022023.
short: M. Erbar, D.L. Forkert, J. Maas, D. Mugnolo, Networks and Heterogeneous Media
17 (2022) 687–717.
date_created: 2022-07-31T22:01:46Z
date_published: 2022-10-01T00:00:00Z
date_updated: 2023-08-03T12:25:49Z
day: '01'
department:
- _id: JaMa
doi: 10.3934/nhm.2022023
ec_funded: 1
external_id:
arxiv:
- '2105.05677'
isi:
- '000812422100001'
intvolume: ' 17'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2105.05677
month: '10'
oa: 1
oa_version: Preprint
page: 687-717
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
grant_number: F6504
name: Taming Complexity in Partial Differential Systems
publication: Networks and Heterogeneous Media
publication_identifier:
eissn:
- 1556-181X
issn:
- 1556-1801
publication_status: published
publisher: American Institute of Mathematical Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Gradient flow formulation of diffusion equations in the Wasserstein space over
a metric graph
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 17
year: '2022'
...
---
_id: '11701'
abstract:
- lang: eng
text: In this paper we develop a new approach to nonlinear stochastic partial differential
equations with Gaussian noise. Our aim is to provide an abstract framework which
is applicable to a large class of SPDEs and includes many important cases of nonlinear
parabolic problems which are of quasi- or semilinear type. This first part is
on local existence and well-posedness. A second part in preparation is on blow-up
criteria and regularization. Our theory is formulated in an Lp-setting, and because
of this we can deal with nonlinearities in a very efficient way. Applications
to several concrete problems and their quasilinear variants are given. This includes
Burgers' equation, the Allen–Cahn equation, the Cahn–Hilliard equation, reaction–diffusion
equations, and the porous media equation. The interplay of the nonlinearities
and the critical spaces of initial data leads to new results and insights for
these SPDEs. The proofs are based on recent developments in maximal regularity
theory for the linearized problem for deterministic and stochastic evolution equations.
In particular, our theory can be seen as a stochastic version of the theory of
critical spaces due to Prüss–Simonett–Wilke (2018). Sharp weighted time-regularity
allow us to deal with rough initial values and obtain instantaneous regularization
results. The abstract well-posedness results are obtained by a combination of
several sophisticated splitting and truncation arguments.
acknowledgement: The second author is supported by the VIDI subsidy 639.032.427 of
the Netherlands Organisation for Scientific Research (NWO).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Antonio
full_name: Agresti, Antonio
id: 673cd0cc-9b9a-11eb-b144-88f30e1fbb72
last_name: Agresti
orcid: 0000-0002-9573-2962
- first_name: Mark
full_name: Veraar, Mark
last_name: Veraar
citation:
ama: Agresti A, Veraar M. Nonlinear parabolic stochastic evolution equations in
critical spaces Part I. Stochastic maximal regularity and local existence. Nonlinearity.
2022;35(8):4100-4210. doi:10.1088/1361-6544/abd613
apa: Agresti, A., & Veraar, M. (2022). Nonlinear parabolic stochastic evolution
equations in critical spaces Part I. Stochastic maximal regularity and local existence.
Nonlinearity. IOP Publishing. https://doi.org/10.1088/1361-6544/abd613
chicago: Agresti, Antonio, and Mark Veraar. “Nonlinear Parabolic Stochastic Evolution
Equations in Critical Spaces Part I. Stochastic Maximal Regularity and Local Existence.”
Nonlinearity. IOP Publishing, 2022. https://doi.org/10.1088/1361-6544/abd613.
ieee: A. Agresti and M. Veraar, “Nonlinear parabolic stochastic evolution equations
in critical spaces Part I. Stochastic maximal regularity and local existence,”
Nonlinearity, vol. 35, no. 8. IOP Publishing, pp. 4100–4210, 2022.
ista: Agresti A, Veraar M. 2022. Nonlinear parabolic stochastic evolution equations
in critical spaces Part I. Stochastic maximal regularity and local existence.
Nonlinearity. 35(8), 4100–4210.
mla: Agresti, Antonio, and Mark Veraar. “Nonlinear Parabolic Stochastic Evolution
Equations in Critical Spaces Part I. Stochastic Maximal Regularity and Local Existence.”
Nonlinearity, vol. 35, no. 8, IOP Publishing, 2022, pp. 4100–210, doi:10.1088/1361-6544/abd613.
short: A. Agresti, M. Veraar, Nonlinearity 35 (2022) 4100–4210.
date_created: 2022-07-31T22:01:47Z
date_published: 2022-08-04T00:00:00Z
date_updated: 2023-08-03T12:25:08Z
day: '04'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1088/1361-6544/abd613
external_id:
arxiv:
- '2001.00512'
isi:
- '000826695900001'
file:
- access_level: open_access
checksum: 997a4bff2dfbee3321d081328c2f1e1a
content_type: application/pdf
creator: dernst
date_created: 2022-08-01T10:39:36Z
date_updated: 2022-08-01T10:39:36Z
file_id: '11715'
file_name: 2022_Nonlinearity_Agresti.pdf
file_size: 2122096
relation: main_file
success: 1
file_date_updated: 2022-08-01T10:39:36Z
has_accepted_license: '1'
intvolume: ' 35'
isi: 1
issue: '8'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 4100-4210
publication: Nonlinearity
publication_identifier:
eissn:
- 1361-6544
issn:
- 0951-7715
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nonlinear parabolic stochastic evolution equations in critical spaces Part
I. Stochastic maximal regularity and local existence
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
short: CC BY (3.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 35
year: '2022'
...
---
_id: '11702'
abstract:
- lang: eng
text: When Mendel’s work was rediscovered in 1900, and extended to establish classical
genetics, it was initially seen in opposition to Darwin’s theory of evolution
by natural selection on continuous variation, as represented by the biometric
research program that was the foundation of quantitative genetics. As Fisher,
Haldane, and Wright established a century ago, Mendelian inheritance is exactly
what is needed for natural selection to work efficiently. Yet, the synthesis remains
unfinished. We do not understand why sexual reproduction and a fair meiosis predominate
in eukaryotes, or how far these are responsible for their diversity and complexity.
Moreover, although quantitative geneticists have long known that adaptive variation
is highly polygenic, and that this is essential for efficient selection, this
is only now becoming appreciated by molecular biologists—and we still do not have
a good framework for understanding polygenic variation or diffuse function.
acknowledgement: I thank Laura Hayward, Jitka Polechova, and Anja Westram for discussions
and comments.
article_number: e2122147119
article_processing_charge: No
article_type: original
author:
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
citation:
ama: Barton NH. The “New Synthesis.” Proceedings of the National Academy of Sciences
of the United States of America. 2022;119(30). doi:10.1073/pnas.2122147119
apa: Barton, N. H. (2022). The “New Synthesis.” Proceedings of the National Academy
of Sciences of the United States of America. Proceedings of the National Academy
of Sciences. https://doi.org/10.1073/pnas.2122147119
chicago: Barton, Nicholas H. “The ‘New Synthesis.’” Proceedings of the National
Academy of Sciences of the United States of America. Proceedings of the National
Academy of Sciences, 2022. https://doi.org/10.1073/pnas.2122147119.
ieee: N. H. Barton, “The ‘New Synthesis,’” Proceedings of the National Academy
of Sciences of the United States of America, vol. 119, no. 30. Proceedings
of the National Academy of Sciences, 2022.
ista: Barton NH. 2022. The ‘New Synthesis’. Proceedings of the National Academy
of Sciences of the United States of America. 119(30), e2122147119.
mla: Barton, Nicholas H. “The ‘New Synthesis.’” Proceedings of the National Academy
of Sciences of the United States of America, vol. 119, no. 30, e2122147119,
Proceedings of the National Academy of Sciences, 2022, doi:10.1073/pnas.2122147119.
short: N.H. Barton, Proceedings of the National Academy of Sciences of the United
States of America 119 (2022).
date_created: 2022-07-31T22:01:47Z
date_published: 2022-07-18T00:00:00Z
date_updated: 2022-08-01T11:00:25Z
day: '18'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1073/pnas.2122147119
external_id:
pmid:
- '35858408'
file:
- access_level: open_access
checksum: 06c866196a8957f0c37b8a121771c885
content_type: application/pdf
creator: dernst
date_created: 2022-08-01T10:58:28Z
date_updated: 2022-08-01T10:58:28Z
file_id: '11716'
file_name: 2022_PNAS_Barton.pdf
file_size: 848511
relation: main_file
success: 1
file_date_updated: 2022-08-01T10:58:28Z
has_accepted_license: '1'
intvolume: ' 119'
issue: '30'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Proceedings of the National Academy of Sciences of the United States
of America
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: The "New Synthesis"
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 119
year: '2022'
...
---
_id: '11703'
abstract:
- lang: eng
text: Polyploidization may precipitate dramatic changes to the genome, including
chromosome rearrangements, gene loss, and changes in gene expression. In dioecious
plants, the sex-determining mechanism may also be disrupted by polyploidization,
with the potential evolution of hermaphroditism. However, while dioecy appears
to have persisted through a ploidy transition in some species, it is unknown whether
the newly formed polyploid maintained its sex-determining system uninterrupted,
or whether dioecy re-evolved after a period of hermaphroditism. Here, we develop
a bioinformatic pipeline using RNA-sequencing data from natural populations to
demonstrate that the allopolyploid plant Mercurialis canariensis directly inherited
its sex-determining region from one of its diploid progenitor species, M. annua,
and likely remained dioecious through the transition. The sex-determining region
of M. canariensis is smaller than that of its diploid progenitor, suggesting that
the non-recombining region of M. annua expanded subsequent to the polyploid origin
of M. canariensis. Homeologous pairs show partial sexual subfunctionalization.
We discuss the possibility that gene duplicates created by polyploidization might
contribute to resolving sexual antagonism.
acknowledgement: "JRP was supported by the Swiss National Science Foundation (https://www.snf.ch/en),
Sinergia grant 26073998. BV was supported by the European Research Council (https://erc.europa.eu/)
under the European Union’s Horizon 2020 research and innovation program, grant number
715257. The funders had no role in study design, data collection and analysis, decision
to publish, or preparation of the manuscript.\r\nPlants were grown in Lausanne by
Aline Revel, and RNA extraction and library preparation were performed by Dessislava
Savova Bianchi. All sequencing and the IsoSeq3 analysis were carried out by Center
for Integrative Genomics at the University of Lausanne. All other computational
analyses were performed on the server at IST Austria."
article_number: e1010226
article_processing_charge: No
article_type: original
author:
- first_name: Melissa A
full_name: Toups, Melissa A
id: 4E099E4E-F248-11E8-B48F-1D18A9856A87
last_name: Toups
orcid: 0000-0002-9752-7380
- first_name: Beatriz
full_name: Vicoso, Beatriz
id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
last_name: Vicoso
orcid: 0000-0002-4579-8306
- first_name: John R.
full_name: Pannell, John R.
last_name: Pannell
citation:
ama: Toups MA, Vicoso B, Pannell JR. Dioecy and chromosomal sex determination are
maintained through allopolyploid speciation in the plant genus Mercurialis. PLoS
Genetics. 2022;18(7). doi:10.1371/journal.pgen.1010226
apa: Toups, M. A., Vicoso, B., & Pannell, J. R. (2022). Dioecy and chromosomal
sex determination are maintained through allopolyploid speciation in the plant
genus Mercurialis. PLoS Genetics. Public Library of Science. https://doi.org/10.1371/journal.pgen.1010226
chicago: Toups, Melissa A, Beatriz Vicoso, and John R. Pannell. “Dioecy and Chromosomal
Sex Determination Are Maintained through Allopolyploid Speciation in the Plant
Genus Mercurialis.” PLoS Genetics. Public Library of Science, 2022. https://doi.org/10.1371/journal.pgen.1010226.
ieee: M. A. Toups, B. Vicoso, and J. R. Pannell, “Dioecy and chromosomal sex determination
are maintained through allopolyploid speciation in the plant genus Mercurialis,”
PLoS Genetics, vol. 18, no. 7. Public Library of Science, 2022.
ista: Toups MA, Vicoso B, Pannell JR. 2022. Dioecy and chromosomal sex determination
are maintained through allopolyploid speciation in the plant genus Mercurialis.
PLoS Genetics. 18(7), e1010226.
mla: Toups, Melissa A., et al. “Dioecy and Chromosomal Sex Determination Are Maintained
through Allopolyploid Speciation in the Plant Genus Mercurialis.” PLoS Genetics,
vol. 18, no. 7, e1010226, Public Library of Science, 2022, doi:10.1371/journal.pgen.1010226.
short: M.A. Toups, B. Vicoso, J.R. Pannell, PLoS Genetics 18 (2022).
date_created: 2022-07-31T22:01:48Z
date_published: 2022-07-06T00:00:00Z
date_updated: 2023-08-03T12:17:12Z
day: '06'
ddc:
- '570'
department:
- _id: BeVi
doi: 10.1371/journal.pgen.1010226
ec_funded: 1
external_id:
isi:
- '000886643100006'
pmid:
- '35793353'
file:
- access_level: open_access
checksum: aa4c137f82635e700856c359dccfaa0a
content_type: application/pdf
creator: dernst
date_created: 2022-08-01T07:49:25Z
date_updated: 2022-08-01T07:49:25Z
file_id: '11708'
file_name: 2022_PLoSGenetics_Toups.pdf
file_size: 1620272
relation: main_file
success: 1
file_date_updated: 2022-08-01T07:49:25Z
has_accepted_license: '1'
intvolume: ' 18'
isi: 1
issue: '7'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 250BDE62-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '715257'
name: Prevalence and Influence of Sexual Antagonism on Genome Evolution
publication: PLoS Genetics
publication_identifier:
eissn:
- 1553-7404
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dioecy and chromosomal sex determination are maintained through allopolyploid
speciation in the plant genus Mercurialis
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 18
year: '2022'
...
---
_id: '11704'
abstract:
- lang: eng
text: In Fall 2020, several European countries reported rapid increases in COVID-19
cases along with growing estimates of the effective reproduction rates. Such an
acceleration in epidemic spread is usually attributed to time-dependent effects,
e.g. human travel, seasonal behavioral changes, mutations of the pathogen etc.
In this case however the acceleration occurred when counter measures such as testing
and contact tracing exceeded their capacity limit. Considering Austria as an example,
here we show that this dynamics can be captured by a time-independent, i.e. autonomous,
compartmental model that incorporates these capacity limits. In this model, the
epidemic acceleration coincides with the exhaustion of mitigation efforts, resulting
in an increasing fraction of undetected cases that drive the effective reproduction
rate progressively higher. We demonstrate that standard models which does not
include this effect necessarily result in a systematic underestimation of the
effective reproduction rate.
article_number: e0269975
article_processing_charge: No
article_type: original
author:
- first_name: Nazmi B
full_name: Budanur, Nazmi B
id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
last_name: Budanur
orcid: 0000-0003-0423-5010
- first_name: Björn
full_name: Hof, Björn
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
citation:
ama: Budanur NB, Hof B. An autonomous compartmental model for accelerating epidemics.
PLoS ONE. 2022;17(7). doi:10.1371/journal.pone.0269975
apa: Budanur, N. B., & Hof, B. (2022). An autonomous compartmental model for
accelerating epidemics. PLoS ONE. Public Library of Science. https://doi.org/10.1371/journal.pone.0269975
chicago: Budanur, Nazmi B, and Björn Hof. “An Autonomous Compartmental Model for
Accelerating Epidemics.” PLoS ONE. Public Library of Science, 2022. https://doi.org/10.1371/journal.pone.0269975.
ieee: N. B. Budanur and B. Hof, “An autonomous compartmental model for accelerating
epidemics,” PLoS ONE, vol. 17, no. 7. Public Library of Science, 2022.
ista: Budanur NB, Hof B. 2022. An autonomous compartmental model for accelerating
epidemics. PLoS ONE. 17(7), e0269975.
mla: Budanur, Nazmi B., and Björn Hof. “An Autonomous Compartmental Model for Accelerating
Epidemics.” PLoS ONE, vol. 17, no. 7, e0269975, Public Library of Science,
2022, doi:10.1371/journal.pone.0269975.
short: N.B. Budanur, B. Hof, PLoS ONE 17 (2022).
date_created: 2022-07-31T22:01:48Z
date_published: 2022-07-18T00:00:00Z
date_updated: 2023-08-03T12:24:22Z
day: '18'
ddc:
- '510'
department:
- _id: BjHo
doi: 10.1371/journal.pone.0269975
external_id:
isi:
- '000911392100055'
file:
- access_level: open_access
checksum: 1ddd9b91e6dec31ab0e7a8433ca2d452
content_type: application/pdf
creator: dernst
date_created: 2022-08-01T08:02:38Z
date_updated: 2022-08-01T08:02:38Z
file_id: '11712'
file_name: 2022_PLoSONE_Budanur.pdf
file_size: 1421256
relation: main_file
success: 1
file_date_updated: 2022-08-01T08:02:38Z
has_accepted_license: '1'
intvolume: ' 17'
isi: 1
issue: '7'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: PLoS ONE
publication_identifier:
eissn:
- 1932-6203
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
related_material:
record:
- id: '11711'
relation: research_data
status: public
scopus_import: '1'
status: public
title: An autonomous compartmental model for accelerating epidemics
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 17
year: '2022'
...
---
_id: '11705'
abstract:
- lang: eng
text: 'The broad implementation of thermoelectricity requires high-performance and
low-cost materials. One possibility is employing surfactant-free solution synthesis
to produce nanopowders. We propose the strategy of functionalizing “naked” particles’
surface by inorganic molecules to control the nanostructure and, consequently,
thermoelectric performance. In particular, we use bismuth thiolates to functionalize
surfactant-free SnTe particles’ surfaces. Upon thermal processing, bismuth thiolates
decomposition renders SnTe-Bi2S3 nanocomposites with synergistic functions: 1)
carrier concentration optimization by Bi doping; 2) Seebeck coefficient enhancement
and bipolar effect suppression by energy filtering; and 3) lattice thermal conductivity
reduction by small grain domains, grain boundaries and nanostructuration. Overall,
the SnTe-Bi2S3 nanocomposites exhibit peak z T up to 1.3 at 873 K and an average
z T of ≈0.6 at 300–873 K, which is among the highest reported for solution-processed
SnTe.'
acknowledged_ssus:
- _id: EM-Fac
- _id: NanoFab
acknowledgement: This research was supported by the Scientific Service Units (SSU)
of IST Austria through resources provided by Electron Microscopy Facility (EMF)
and the Nanofabrication Facility (NNF). This work was financially supported by IST
Austria and the Werner Siemens Foundation. C.C. acknowledges funding from the FWF
“Lise Meitner Fellowship” grant agreement M 2889-N. Lise Meitner Project (M2889-N).
Y.L. acknowledges funding from the European Union's Horizon 2020 research and innovation
program under the Marie Sklodowska-Curie grant agreement No. 754411. R.L.B. thanks
the National Science Foundation for support under DMR-1904719. MCS acknowledge MINECO
Juan de la Cierva Incorporation fellowship (JdlCI 2019) and Severo Ochoa. M.C.S.
and J.A. acknowledge funding from Generalitat de Catalunya 2017 SGR 327. ICN2 is
supported by the Severo Ochoa program from Spanish MINECO (Grant no. SEV-2017-0706)
and is funded by the CERCA Programme/Generalitat de Catalunya. This study was supported
by MCIN with funding from European Union NextGenerationEU (PRTR-C17.I1) and Generalitat
de Catalunya.
article_number: e202207002
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Cheng
full_name: Chang, Cheng
id: 9E331C2E-9F27-11E9-AE48-5033E6697425
last_name: Chang
orcid: 0000-0002-9515-4277
- first_name: Yu
full_name: Liu, Yu
id: 2A70014E-F248-11E8-B48F-1D18A9856A87
last_name: Liu
orcid: 0000-0001-7313-6740
- first_name: Seungho
full_name: Lee, Seungho
id: BB243B88-D767-11E9-B658-BC13E6697425
last_name: Lee
orcid: 0000-0002-6962-8598
- first_name: Maria
full_name: Spadaro, Maria
last_name: Spadaro
- first_name: Kristopher M.
full_name: Koskela, Kristopher M.
last_name: Koskela
- first_name: Tobias
full_name: Kleinhanns, Tobias
id: 8BD9DE16-AB3C-11E9-9C8C-2A03E6697425
last_name: Kleinhanns
- first_name: Tommaso
full_name: Costanzo, Tommaso
id: D93824F4-D9BA-11E9-BB12-F207E6697425
last_name: Costanzo
orcid: 0000-0001-9732-3815
- first_name: Jordi
full_name: Arbiol, Jordi
last_name: Arbiol
- first_name: Richard L.
full_name: Brutchey, Richard L.
last_name: Brutchey
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
citation:
ama: 'Chang C, Liu Y, Lee S, et al. Surface functionalization of surfactant-free
particles: A strategy to tailor the properties of nanocomposites for enhanced
thermoelectric performance. Angewandte Chemie - International Edition.
2022;61(35). doi:10.1002/anie.202207002'
apa: 'Chang, C., Liu, Y., Lee, S., Spadaro, M., Koskela, K. M., Kleinhanns, T.,
… Ibáñez, M. (2022). Surface functionalization of surfactant-free particles: A
strategy to tailor the properties of nanocomposites for enhanced thermoelectric
performance. Angewandte Chemie - International Edition. Wiley. https://doi.org/10.1002/anie.202207002'
chicago: 'Chang, Cheng, Yu Liu, Seungho Lee, Maria Spadaro, Kristopher M. Koskela,
Tobias Kleinhanns, Tommaso Costanzo, Jordi Arbiol, Richard L. Brutchey, and Maria
Ibáñez. “Surface Functionalization of Surfactant-Free Particles: A Strategy to
Tailor the Properties of Nanocomposites for Enhanced Thermoelectric Performance.”
Angewandte Chemie - International Edition. Wiley, 2022. https://doi.org/10.1002/anie.202207002.'
ieee: 'C. Chang et al., “Surface functionalization of surfactant-free particles:
A strategy to tailor the properties of nanocomposites for enhanced thermoelectric
performance,” Angewandte Chemie - International Edition, vol. 61, no. 35.
Wiley, 2022.'
ista: 'Chang C, Liu Y, Lee S, Spadaro M, Koskela KM, Kleinhanns T, Costanzo T, Arbiol
J, Brutchey RL, Ibáñez M. 2022. Surface functionalization of surfactant-free particles:
A strategy to tailor the properties of nanocomposites for enhanced thermoelectric
performance. Angewandte Chemie - International Edition. 61(35), e202207002.'
mla: 'Chang, Cheng, et al. “Surface Functionalization of Surfactant-Free Particles:
A Strategy to Tailor the Properties of Nanocomposites for Enhanced Thermoelectric
Performance.” Angewandte Chemie - International Edition, vol. 61, no. 35,
e202207002, Wiley, 2022, doi:10.1002/anie.202207002.'
short: C. Chang, Y. Liu, S. Lee, M. Spadaro, K.M. Koskela, T. Kleinhanns, T. Costanzo,
J. Arbiol, R.L. Brutchey, M. Ibáñez, Angewandte Chemie - International Edition
61 (2022).
date_created: 2022-07-31T22:01:48Z
date_published: 2022-08-26T00:00:00Z
date_updated: 2023-08-03T12:23:52Z
day: '26'
ddc:
- '540'
department:
- _id: MaIb
- _id: EM-Fac
doi: 10.1002/anie.202207002
ec_funded: 1
external_id:
isi:
- '000828274200001'
file:
- access_level: open_access
checksum: ad601f2b9e26e46ab4785162be58b5ed
content_type: application/pdf
creator: dernst
date_created: 2023-02-02T08:01:00Z
date_updated: 2023-02-02T08:01:00Z
file_id: '12476'
file_name: 2022_AngewandteChemieInternat_Chang.pdf
file_size: 4072650
relation: main_file
success: 1
file_date_updated: 2023-02-02T08:01:00Z
has_accepted_license: '1'
intvolume: ' 61'
isi: 1
issue: '35'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 9B8804FC-BA93-11EA-9121-9846C619BF3A
grant_number: M02889
name: Bottom-up Engineering for Thermoelectric Applications
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Angewandte Chemie - International Edition
publication_identifier:
eissn:
- 1521-3773
issn:
- 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Surface functionalization of surfactant-free particles: A strategy to tailor
the properties of nanocomposites for enhanced thermoelectric performance'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 61
year: '2022'
...
---
_id: '11707'
abstract:
- lang: eng
text: 'In this work we introduce the graph-theoretic notion of mendability: for
each locally checkable graph problem we can define its mending radius, which captures
the idea of how far one needs to modify a partial solution in order to “patch
a hole.” We explore how mendability is connected to the existence of efficient
algorithms, especially in distributed, parallel, and fault-tolerant settings.
It is easy to see that O(1)-mendable problems are also solvable in O(log∗n) rounds
in the LOCAL model of distributed computing. One of the surprises is that in paths
and cycles, a converse also holds in the following sense: if a problem Π can be
solved in O(log∗n), there is always a restriction Π′⊆Π that is still efficiently
solvable but that is also O(1)-mendable. We also explore the structure of the
landscape of mendability. For example, we show that in trees, the mending radius
of any locally checkable problem is O(1), Θ(logn), or Θ(n), while in general graphs
the structure is much more diverse.'
acknowledgement: This project has received funding from the European Union’s Horizon
2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement
No 840605. This work was supported in part by the Academy of Finland, Grants 314888
and 333837. The authors would also like to thank David Harris, Neven Villani, and
the anonymous reviewers for their very helpful comments and feedback on previous
versions of this work.
article_processing_charge: No
arxiv: 1
author:
- first_name: Alkida
full_name: Balliu, Alkida
last_name: Balliu
- first_name: Juho
full_name: Hirvonen, Juho
last_name: Hirvonen
- first_name: Darya
full_name: Melnyk, Darya
last_name: Melnyk
- first_name: Dennis
full_name: Olivetti, Dennis
last_name: Olivetti
- first_name: Joel
full_name: Rybicki, Joel
id: 334EFD2E-F248-11E8-B48F-1D18A9856A87
last_name: Rybicki
orcid: 0000-0002-6432-6646
- first_name: Jukka
full_name: Suomela, Jukka
last_name: Suomela
citation:
ama: 'Balliu A, Hirvonen J, Melnyk D, Olivetti D, Rybicki J, Suomela J. Local mending.
In: Parter M, ed. International Colloquium on Structural Information and Communication
Complexity. Vol 13298. LNCS. Springer Nature; 2022:1-20. doi:10.1007/978-3-031-09993-9_1'
apa: 'Balliu, A., Hirvonen, J., Melnyk, D., Olivetti, D., Rybicki, J., & Suomela,
J. (2022). Local mending. In M. Parter (Ed.), International Colloquium on Structural
Information and Communication Complexity (Vol. 13298, pp. 1–20). Paderborn,
Germany: Springer Nature. https://doi.org/10.1007/978-3-031-09993-9_1'
chicago: Balliu, Alkida, Juho Hirvonen, Darya Melnyk, Dennis Olivetti, Joel Rybicki,
and Jukka Suomela. “Local Mending.” In International Colloquium on Structural
Information and Communication Complexity, edited by Merav Parter, 13298:1–20.
LNCS. Springer Nature, 2022. https://doi.org/10.1007/978-3-031-09993-9_1.
ieee: A. Balliu, J. Hirvonen, D. Melnyk, D. Olivetti, J. Rybicki, and J. Suomela,
“Local mending,” in International Colloquium on Structural Information and
Communication Complexity, Paderborn, Germany, 2022, vol. 13298, pp. 1–20.
ista: 'Balliu A, Hirvonen J, Melnyk D, Olivetti D, Rybicki J, Suomela J. 2022. Local
mending. International Colloquium on Structural Information and Communication
Complexity. SIROCCO: Structural Information and Communication ComplexityLNCS vol.
13298, 1–20.'
mla: Balliu, Alkida, et al. “Local Mending.” International Colloquium on Structural
Information and Communication Complexity, edited by Merav Parter, vol. 13298,
Springer Nature, 2022, pp. 1–20, doi:10.1007/978-3-031-09993-9_1.
short: A. Balliu, J. Hirvonen, D. Melnyk, D. Olivetti, J. Rybicki, J. Suomela, in:,
M. Parter (Ed.), International Colloquium on Structural Information and Communication
Complexity, Springer Nature, 2022, pp. 1–20.
conference:
end_date: 2022-06-29
location: Paderborn, Germany
name: 'SIROCCO: Structural Information and Communication Complexity'
start_date: 2022-06-27
date_created: 2022-07-31T22:01:49Z
date_published: 2022-06-25T00:00:00Z
date_updated: 2023-08-03T12:16:29Z
day: '25'
department:
- _id: DaAl
doi: 10.1007/978-3-031-09993-9_1
ec_funded: 1
editor:
- first_name: Merav
full_name: Parter, Merav
last_name: Parter
external_id:
arxiv:
- '2102.08703'
isi:
- '000876977400001'
intvolume: ' 13298'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2102.08703
month: '06'
oa: 1
oa_version: Preprint
page: 1-20
project:
- _id: 26A5D39A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '840605'
name: Coordination in constrained and natural distributed systems
publication: International Colloquium on Structural Information and Communication
Complexity
publication_identifier:
eissn:
- 1611-3349
isbn:
- '9783031099922'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: LNCS
status: public
title: Local mending
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13298
year: '2022'
...
---
_id: '11711'
abstract:
- lang: eng
text: Codes and data for reproducing the results of N. B. Budanur and B. Hof "An
autonomous compartmental model for accelerating epidemics"
article_processing_charge: No
author:
- first_name: Nazmi B
full_name: Budanur, Nazmi B
id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
last_name: Budanur
orcid: 0000-0003-0423-5010
citation:
ama: Budanur NB. burakbudanur/autoacc-public. 2022. doi:10.5281/ZENODO.6802720
apa: Budanur, N. B. (2022). burakbudanur/autoacc-public. Zenodo. https://doi.org/10.5281/ZENODO.6802720
chicago: Budanur, Nazmi B. “Burakbudanur/Autoacc-Public.” Zenodo, 2022. https://doi.org/10.5281/ZENODO.6802720.
ieee: N. B. Budanur, “burakbudanur/autoacc-public.” Zenodo, 2022.
ista: Budanur NB. 2022. burakbudanur/autoacc-public, Zenodo, 10.5281/ZENODO.6802720.
mla: Budanur, Nazmi B. Burakbudanur/Autoacc-Public. Zenodo, 2022, doi:10.5281/ZENODO.6802720.
short: N.B. Budanur, (2022).
date_created: 2022-08-01T08:06:33Z
date_published: 2022-07-06T00:00:00Z
date_updated: 2023-08-03T12:24:21Z
day: '06'
ddc:
- '000'
department:
- _id: BjHo
doi: 10.5281/ZENODO.6802720
has_accepted_license: '1'
main_file_link:
- open_access: '1'
url: https://doi.org/10.5281/ZENODO.6802720
month: '07'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
record:
- id: '11704'
relation: used_in_publication
status: public
status: public
title: burakbudanur/autoacc-public
tmp:
image: /images/cc_0.png
legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
name: Creative Commons Public Domain Dedication (CC0 1.0)
short: CC0 (1.0)
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2022'
...
---
_id: '11713'
abstract:
- lang: eng
text: "Objective: MazF is a sequence-specific endoribonuclease-toxin of the MazEF
toxin–antitoxin system. MazF cleaves single-stranded ribonucleic acid (RNA) regions
at adenine–cytosine–adenine (ACA) sequences in the bacterium Escherichia coli.
The MazEF system has been used in various biotechnology and synthetic biology
applications. In this study, we infer how ectopic mazF overexpression affects
production of heterologous proteins. To this end, we quantified the levels of
fluorescent proteins expressed in E. coli from reporters translated from the ACA-containing
or ACA-less messenger RNAs (mRNAs). Additionally, we addressed the impact of the
5′-untranslated region of these reporter mRNAs under the same conditions by comparing
expression from mRNAs that comprise (canonical mRNA) or lack this region (leaderless
mRNA).\r\nResults: Flow cytometry analysis indicates that during mazF overexpression,
fluorescent proteins are translated from the canonical as well as leaderless mRNAs.
Our analysis further indicates that longer mazF overexpression generally increases
the concentration of fluorescent proteins translated from ACA-less mRNAs, however
it also substantially increases bacterial population heterogeneity. Finally, our
results suggest that the strength and duration of mazF overexpression should be
optimized for each experimental setup, to maximize the heterologous protein production
and minimize the amount of phenotypic heterogeneity in bacterial populations,
which is unfavorable in biotechnological processes."
acknowledgement: "We acknowledge the Max Perutz Labs FACS Facility together with Thomas
Sauer. NN is grateful to Călin C. Guet for his support.\r\nThis work was funded
by the Elise Richter grant V738 of the Austrian Science Fund (FWF), and the FWF
Lise Meitner grant M1697, to NN; and by the FWF grant P22249, FWF Special Research
Program RNA-REG F43 (subproject F4316), and FWF doctoral program RNA Biology (W1207),
to IM. Open access funding provided by the Austrian Science Fund."
article_number: '173'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Nela
full_name: Nikolic, Nela
id: 42D9CABC-F248-11E8-B48F-1D18A9856A87
last_name: Nikolic
orcid: 0000-0001-9068-6090
- first_name: Martina
full_name: Sauert, Martina
last_name: Sauert
- first_name: Tanino G.
full_name: Albanese, Tanino G.
last_name: Albanese
- first_name: Isabella
full_name: Moll, Isabella
last_name: Moll
citation:
ama: Nikolic N, Sauert M, Albanese TG, Moll I. Quantifying heterologous gene expression
during ectopic MazF production in Escherichia coli. BMC Research Notes.
2022;15. doi:10.1186/s13104-022-06061-9
apa: Nikolic, N., Sauert, M., Albanese, T. G., & Moll, I. (2022). Quantifying
heterologous gene expression during ectopic MazF production in Escherichia coli.
BMC Research Notes. Springer Nature. https://doi.org/10.1186/s13104-022-06061-9
chicago: Nikolic, Nela, Martina Sauert, Tanino G. Albanese, and Isabella Moll. “Quantifying
Heterologous Gene Expression during Ectopic MazF Production in Escherichia Coli.”
BMC Research Notes. Springer Nature, 2022. https://doi.org/10.1186/s13104-022-06061-9.
ieee: N. Nikolic, M. Sauert, T. G. Albanese, and I. Moll, “Quantifying heterologous
gene expression during ectopic MazF production in Escherichia coli,” BMC Research
Notes, vol. 15. Springer Nature, 2022.
ista: Nikolic N, Sauert M, Albanese TG, Moll I. 2022. Quantifying heterologous gene
expression during ectopic MazF production in Escherichia coli. BMC Research Notes.
15, 173.
mla: Nikolic, Nela, et al. “Quantifying Heterologous Gene Expression during Ectopic
MazF Production in Escherichia Coli.” BMC Research Notes, vol. 15, 173,
Springer Nature, 2022, doi:10.1186/s13104-022-06061-9.
short: N. Nikolic, M. Sauert, T.G. Albanese, I. Moll, BMC Research Notes 15 (2022).
date_created: 2022-08-01T09:04:27Z
date_published: 2022-05-13T00:00:00Z
date_updated: 2022-08-01T09:27:40Z
day: '13'
ddc:
- '570'
department:
- _id: CaGu
doi: 10.1186/s13104-022-06061-9
external_id:
pmid:
- '35562780'
file:
- access_level: open_access
checksum: 008156e5340e9789f0f6d82bde4d347a
content_type: application/pdf
creator: dernst
date_created: 2022-08-01T09:24:42Z
date_updated: 2022-08-01T09:24:42Z
file_id: '11714'
file_name: 2022_BMCResearchNotes_Nikolic.pdf
file_size: 1545310
relation: main_file
success: 1
file_date_updated: 2022-08-01T09:24:42Z
has_accepted_license: '1'
intvolume: ' 15'
keyword:
- General Biochemistry
- Genetics and Molecular Biology
- General Medicine
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 26956E74-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: V00738
name: Bacterial toxin-antitoxin systems as antiphage defense mechanisms
publication: BMC Research Notes
publication_identifier:
issn:
- 1756-0500
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- relation: erratum
url: https://doi.org/10.1186/s13104-022-06152-7
scopus_import: '1'
status: public
title: Quantifying heterologous gene expression during ectopic MazF production in
Escherichia coli
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2022'
...
---
_id: '11717'
abstract:
- lang: eng
text: "We study rigidity of rational maps that come from Newton's root finding method
for polynomials of arbitrary degrees. We establish dynamical rigidity of these
maps: each point in the Julia set of a Newton map is either rigid (i.e. its orbit
can be distinguished in combinatorial terms from all other orbits), or the orbit
of this point eventually lands in the filled-in Julia set of a polynomial-like
restriction of the original map. As a corollary, we show that the Julia sets of
Newton maps in many non-trivial cases are locally connected; in particular, every
cubic Newton map without Siegel points has locally connected Julia set.\r\nIn
the parameter space of Newton maps of arbitrary degree we obtain the following
rigidity result: any two combinatorially equivalent Newton maps are quasiconformally
conjugate in a neighborhood of their Julia sets provided that they either non-renormalizable,
or they are both renormalizable “in the same way”.\r\nOur main tool is a generalized
renormalization concept called “complex box mappings” for which we extend a dynamical
rigidity result by Kozlovski and van Strien so as to include irrationally indifferent
and renormalizable situations."
acknowledgement: 'We are grateful to a number of colleagues for helpful and inspiring
discussions during the time when we worked on this project, in particular Dima Dudko,
Misha Hlushchanka, John Hubbard, Misha Lyubich, Oleg Kozlovski, and Sebastian van
Strien. Finally, we would like to thank our dynamics research group for numerous
helpful and enjoyable discussions: Konstantin Bogdanov, Roman Chernov, Russell Lodge,
Steffen Maaß, David Pfrang, Bernhard Reinke, Sergey Shemyakov, and Maik Sowinski.
We gratefully acknowledge support by the Advanced Grant “HOLOGRAM” (#695 621) of
the European Research Council (ERC), as well as hospitality of Cornell University
in the spring of 2018 while much of this work was prepared. The first-named author
also acknowledges the support of the ERC Advanced Grant “SPERIG” (#885 707).'
article_number: '108591'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Kostiantyn
full_name: Drach, Kostiantyn
id: fe8209e2-906f-11eb-847d-950f8fc09115
last_name: Drach
orcid: 0000-0002-9156-8616
- first_name: Dierk
full_name: Schleicher, Dierk
last_name: Schleicher
citation:
ama: Drach K, Schleicher D. Rigidity of Newton dynamics. Advances in Mathematics.
2022;408(Part A). doi:10.1016/j.aim.2022.108591
apa: Drach, K., & Schleicher, D. (2022). Rigidity of Newton dynamics. Advances
in Mathematics. Elsevier. https://doi.org/10.1016/j.aim.2022.108591
chicago: Drach, Kostiantyn, and Dierk Schleicher. “Rigidity of Newton Dynamics.”
Advances in Mathematics. Elsevier, 2022. https://doi.org/10.1016/j.aim.2022.108591.
ieee: K. Drach and D. Schleicher, “Rigidity of Newton dynamics,” Advances in
Mathematics, vol. 408, no. Part A. Elsevier, 2022.
ista: Drach K, Schleicher D. 2022. Rigidity of Newton dynamics. Advances in Mathematics.
408(Part A), 108591.
mla: Drach, Kostiantyn, and Dierk Schleicher. “Rigidity of Newton Dynamics.” Advances
in Mathematics, vol. 408, no. Part A, 108591, Elsevier, 2022, doi:10.1016/j.aim.2022.108591.
short: K. Drach, D. Schleicher, Advances in Mathematics 408 (2022).
date_created: 2022-08-01T17:08:16Z
date_published: 2022-10-29T00:00:00Z
date_updated: 2023-08-03T12:36:07Z
day: '29'
ddc:
- '510'
department:
- _id: VaKa
doi: 10.1016/j.aim.2022.108591
ec_funded: 1
external_id:
isi:
- '000860924200005'
file:
- access_level: open_access
checksum: 2710e6f5820f8c20a676ddcbb30f0e8d
content_type: application/pdf
creator: dernst
date_created: 2023-02-02T07:39:09Z
date_updated: 2023-02-02T07:39:09Z
file_id: '12474'
file_name: 2022_AdvancesMathematics_Drach.pdf
file_size: 2164036
relation: main_file
success: 1
file_date_updated: 2023-02-02T07:39:09Z
has_accepted_license: '1'
intvolume: ' 408'
isi: 1
issue: Part A
keyword:
- General Mathematics
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 9B8B92DE-BA93-11EA-9121-9846C619BF3A
call_identifier: H2020
grant_number: '885707'
name: Spectral rigidity and integrability for billiards and geodesic flows
publication: Advances in Mathematics
publication_identifier:
issn:
- 0001-8708
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rigidity of Newton dynamics
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 408
year: '2022'
...
---
_id: '11723'
abstract:
- lang: eng
text: Plant cell growth responds rapidly to various stimuli, adapting architecture
to environmental changes. Two major endogenous signals regulating growth are the
phytohormone auxin and the secreted peptides rapid alkalinization factors (RALFs).
Both trigger very rapid cellular responses and also exert long-term effects [Du
et al., Annu. Rev. Plant Biol. 71, 379–402 (2020); Blackburn et al., Plant Physiol.
182, 1657–1666 (2020)]. However, the way, in which these distinct signaling pathways
converge to regulate growth, remains unknown. Here, using vertical confocal microscopy
combined with a microfluidic chip, we addressed the mechanism of RALF action on
growth. We observed correlation between RALF1-induced rapid Arabidopsis thaliana
root growth inhibition and apoplast alkalinization during the initial phase of
the response, and revealed that RALF1 reversibly inhibits primary root growth
through apoplast alkalinization faster than within 1 min. This rapid apoplast
alkalinization was the result of RALF1-induced net H+ influx and was mediated
by the receptor FERONIA (FER). Furthermore, we investigated the cross-talk between
RALF1 and the auxin signaling pathways during root growth regulation. The results
showed that RALF-FER signaling triggered auxin signaling with a delay of approximately
1 h by up-regulating auxin biosynthesis, thus contributing to sustained RALF1-induced
growth inhibition. This biphasic RALF1 action on growth allows plants to respond
rapidly to environmental stimuli and also reprogram growth and development in
the long term.
acknowledgement: We thank Sarah M. Assmann, Kris Vissenberg, and Nadine Paris for
kindly sharing seeds; Matyáš Fendrych for initiating this project and providing
constant support; Lukas Fiedler for revising the manuscript; and Huibin Han and
Arseny Savin for contributing to genotyping. This work was supported by the Austrian
Science Fund (FWF) I 3630-B25 (to J.F.) and the Doctoral Fellowship Progrmme of
the Austrian Academy of Sciences (to L.L.) We also acknowledge Taif University Researchers
Supporting Project TURSP-HC2021/02 and funding “Plants as a tool for sustainable
global development (no. CZ.02.1.01/0.0/0.0/16_019/0000827).”
article_number: e2121058119
article_processing_charge: No
article_type: original
author:
- first_name: Lanxin
full_name: Li, Lanxin
id: 367EF8FA-F248-11E8-B48F-1D18A9856A87
last_name: Li
orcid: 0000-0002-5607-272X
- first_name: Huihuang
full_name: Chen, Huihuang
id: 83c96512-15b2-11ec-abd3-b7eede36184f
last_name: Chen
- first_name: Saqer S.
full_name: Alotaibi, Saqer S.
last_name: Alotaibi
- first_name: Aleš
full_name: Pěnčík, Aleš
last_name: Pěnčík
- first_name: Maciek
full_name: Adamowski, Maciek
id: 45F536D2-F248-11E8-B48F-1D18A9856A87
last_name: Adamowski
orcid: 0000-0001-6463-5257
- first_name: Ondřej
full_name: Novák, Ondřej
last_name: Novák
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Li L, Chen H, Alotaibi SS, et al. RALF1 peptide triggers biphasic root growth
inhibition upstream of auxin biosynthesis. Proceedings of the National Academy
of Sciences. 2022;119(31). doi:10.1073/pnas.2121058119
apa: Li, L., Chen, H., Alotaibi, S. S., Pěnčík, A., Adamowski, M., Novák, O., &
Friml, J. (2022). RALF1 peptide triggers biphasic root growth inhibition upstream
of auxin biosynthesis. Proceedings of the National Academy of Sciences.
Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.2121058119
chicago: Li, Lanxin, Huihuang Chen, Saqer S. Alotaibi, Aleš Pěnčík, Maciek Adamowski,
Ondřej Novák, and Jiří Friml. “RALF1 Peptide Triggers Biphasic Root Growth Inhibition
Upstream of Auxin Biosynthesis.” Proceedings of the National Academy of Sciences.
Proceedings of the National Academy of Sciences, 2022. https://doi.org/10.1073/pnas.2121058119.
ieee: L. Li et al., “RALF1 peptide triggers biphasic root growth inhibition
upstream of auxin biosynthesis,” Proceedings of the National Academy of Sciences,
vol. 119, no. 31. Proceedings of the National Academy of Sciences, 2022.
ista: Li L, Chen H, Alotaibi SS, Pěnčík A, Adamowski M, Novák O, Friml J. 2022.
RALF1 peptide triggers biphasic root growth inhibition upstream of auxin biosynthesis.
Proceedings of the National Academy of Sciences. 119(31), e2121058119.
mla: Li, Lanxin, et al. “RALF1 Peptide Triggers Biphasic Root Growth Inhibition
Upstream of Auxin Biosynthesis.” Proceedings of the National Academy of Sciences,
vol. 119, no. 31, e2121058119, Proceedings of the National Academy of Sciences,
2022, doi:10.1073/pnas.2121058119.
short: L. Li, H. Chen, S.S. Alotaibi, A. Pěnčík, M. Adamowski, O. Novák, J. Friml,
Proceedings of the National Academy of Sciences 119 (2022).
date_created: 2022-08-04T20:06:49Z
date_published: 2022-07-25T00:00:00Z
date_updated: 2024-10-29T10:12:30Z
day: '25'
ddc:
- '580'
department:
- _id: GradSch
- _id: JiFr
doi: 10.1073/pnas.2121058119
external_id:
isi:
- '000881496900002'
pmid:
- '35878023'
file:
- access_level: open_access
checksum: ae6f19b0d9efba6687f9e4dc1bab1d6e
content_type: application/pdf
creator: dernst
date_created: 2022-08-08T07:42:09Z
date_updated: 2022-08-08T07:42:09Z
file_id: '11747'
file_name: 2022_PNAS_Li.pdf
file_size: 2506262
relation: main_file
success: 1
file_date_updated: 2022-08-08T07:42:09Z
has_accepted_license: '1'
intvolume: ' 119'
isi: 1
issue: '31'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 26538374-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I03630
name: Molecular mechanisms of endocytic cargo recognition in plants
- _id: 26B4D67E-B435-11E9-9278-68D0E5697425
grant_number: '25351'
name: 'A Case Study of Plant Growth Regulation: Molecular Mechanism of Auxin-mediated
Rapid Growth Inhibition in Arabidopsis Root'
publication: Proceedings of the National Academy of Sciences
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: RALF1 peptide triggers biphasic root growth inhibition upstream of auxin biosynthesis
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 119
year: '2022'
...
---
_id: '11732'
abstract:
- lang: eng
text: We study the BCS energy gap Ξ in the high–density limit and derive an asymptotic
formula, which strongly depends on the strength of the interaction potential V
on the Fermi surface. In combination with the recent result by one of us (Math.
Phys. Anal. Geom. 25, 3, 2022) on the critical temperature Tc at high densities,
we prove the universality of the ratio of the energy gap and the critical temperature.
acknowledgement: "We are grateful to Robert Seiringer for helpful discussions and
many valuable comments\r\non an earlier version of the manuscript. J.H. acknowledges
partial financial support by the ERC Advanced Grant “RMTBeyond’ No. 101020331. Open
access funding provided by Institute of Science and Technology (IST Austria)"
article_number: '5'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Sven Joscha
full_name: Henheik, Sven Joscha
id: 31d731d7-d235-11ea-ad11-b50331c8d7fb
last_name: Henheik
orcid: 0000-0003-1106-327X
- first_name: Asbjørn Bækgaard
full_name: Lauritsen, Asbjørn Bækgaard
id: e1a2682f-dc8d-11ea-abe3-81da9ac728f1
last_name: Lauritsen
orcid: 0000-0003-4476-2288
citation:
ama: Henheik SJ, Lauritsen AB. The BCS energy gap at high density. Journal of
Statistical Physics. 2022;189. doi:10.1007/s10955-022-02965-9
apa: Henheik, S. J., & Lauritsen, A. B. (2022). The BCS energy gap at high density.
Journal of Statistical Physics. Springer Nature. https://doi.org/10.1007/s10955-022-02965-9
chicago: Henheik, Sven Joscha, and Asbjørn Bækgaard Lauritsen. “The BCS Energy Gap
at High Density.” Journal of Statistical Physics. Springer Nature, 2022.
https://doi.org/10.1007/s10955-022-02965-9.
ieee: S. J. Henheik and A. B. Lauritsen, “The BCS energy gap at high density,” Journal
of Statistical Physics, vol. 189. Springer Nature, 2022.
ista: Henheik SJ, Lauritsen AB. 2022. The BCS energy gap at high density. Journal
of Statistical Physics. 189, 5.
mla: Henheik, Sven Joscha, and Asbjørn Bækgaard Lauritsen. “The BCS Energy Gap at
High Density.” Journal of Statistical Physics, vol. 189, 5, Springer Nature,
2022, doi:10.1007/s10955-022-02965-9.
short: S.J. Henheik, A.B. Lauritsen, Journal of Statistical Physics 189 (2022).
date_created: 2022-08-05T11:36:56Z
date_published: 2022-07-29T00:00:00Z
date_updated: 2023-09-05T14:57:49Z
day: '29'
ddc:
- '530'
department:
- _id: GradSch
- _id: LaEr
- _id: RoSe
doi: 10.1007/s10955-022-02965-9
ec_funded: 1
external_id:
isi:
- '000833007200002'
file:
- access_level: open_access
checksum: b398c4dbf65f71d417981d6e366427e9
content_type: application/pdf
creator: dernst
date_created: 2022-08-08T07:36:34Z
date_updated: 2022-08-08T07:36:34Z
file_id: '11746'
file_name: 2022_JourStatisticalPhysics_Henheik.pdf
file_size: 419563
relation: main_file
success: 1
file_date_updated: 2022-08-08T07:36:34Z
has_accepted_license: '1'
intvolume: ' 189'
isi: 1
keyword:
- Mathematical Physics
- Statistical and Nonlinear Physics
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
call_identifier: H2020
grant_number: '101020331'
name: Random matrices beyond Wigner-Dyson-Mehta
publication: Journal of Statistical Physics
publication_identifier:
eissn:
- 1572-9613
issn:
- 0022-4715
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The BCS energy gap at high density
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 189
year: '2022'
...
---
_id: '11733'
abstract:
- lang: eng
text: Genetically informed, deep-phenotyped biobanks are an important research resource
and it is imperative that the most powerful, versatile, and efficient analysis
approaches are used. Here, we apply our recently developed Bayesian grouped mixture
of regressions model (GMRM) in the UK and Estonian Biobanks and obtain the highest
genomic prediction accuracy reported to date across 21 heritable traits. When
compared to other approaches, GMRM accuracy was greater than annotation prediction
models run in the LDAK or LDPred-funct software by 15% (SE 7%) and 14% (SE 2%),
respectively, and was 18% (SE 3%) greater than a baseline BayesR model without
single-nucleotide polymorphism (SNP) markers grouped into minor allele frequency–linkage
disequilibrium (MAF-LD) annotation categories. For height, the prediction accuracy
R2 was 47% in a UK Biobank holdout sample, which was 76% of the estimated h2SNP.
We then extend our GMRM prediction model to provide mixed-linear model association
(MLMA) SNP marker estimates for genome-wide association (GWAS) discovery, which
increased the independent loci detected to 16,162 in unrelated UK Biobank individuals,
compared to 10,550 from BoltLMM and 10,095 from Regenie, a 62 and 65% increase,
respectively. The average χ2 value of the leading markers increased by 15.24 (SE
0.41) for every 1% increase in prediction accuracy gained over a baseline BayesR
model across the traits. Thus, we show that modeling genetic associations accounting
for MAF and LD differences among SNP markers, and incorporating prior knowledge
of genomic function, is important for both genomic prediction and discovery in
large-scale individual-level studies.
acknowledgement: This project was funded by Swiss National Science Foundation Eccellenza
Grant PCEGP3-181181(toM.R.R.) and by core funding from the Institute of Science
and Technology Austria. P.M.V. acknowledges funding from the Australian National
Health and Medical Research Council (1113400) and the Australian Research Council
(FL180100072). K.L. and R.M. were supported by the Estonian Research Council Grant
PRG687. Estonian Biobank computations were performed in the High-Performance Computing
Centre, University of Tartu.
article_number: e2121279119
article_processing_charge: No
article_type: original
author:
- first_name: Etienne J.
full_name: Orliac, Etienne J.
last_name: Orliac
- first_name: Daniel
full_name: Trejo Banos, Daniel
last_name: Trejo Banos
- first_name: Sven E.
full_name: Ojavee, Sven E.
last_name: Ojavee
- first_name: Kristi
full_name: Läll, Kristi
last_name: Läll
- first_name: Reedik
full_name: Mägi, Reedik
last_name: Mägi
- first_name: Peter M.
full_name: Visscher, Peter M.
last_name: Visscher
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
citation:
ama: Orliac EJ, Trejo Banos D, Ojavee SE, et al. Improving GWAS discovery and genomic
prediction accuracy in biobank data. Proceedings of the National Academy of
Sciences of the United States of America. 2022;119(31). doi:10.1073/pnas.2121279119
apa: Orliac, E. J., Trejo Banos, D., Ojavee, S. E., Läll, K., Mägi, R., Visscher,
P. M., & Robinson, M. R. (2022). Improving GWAS discovery and genomic prediction
accuracy in biobank data. Proceedings of the National Academy of Sciences of
the United States of America. Proceedings of the National Academy of Sciences.
https://doi.org/10.1073/pnas.2121279119
chicago: Orliac, Etienne J., Daniel Trejo Banos, Sven E. Ojavee, Kristi Läll, Reedik
Mägi, Peter M. Visscher, and Matthew Richard Robinson. “Improving GWAS Discovery
and Genomic Prediction Accuracy in Biobank Data.” Proceedings of the National
Academy of Sciences of the United States of America. Proceedings of the National
Academy of Sciences, 2022. https://doi.org/10.1073/pnas.2121279119.
ieee: E. J. Orliac et al., “Improving GWAS discovery and genomic prediction
accuracy in biobank data,” Proceedings of the National Academy of Sciences
of the United States of America, vol. 119, no. 31. Proceedings of the National
Academy of Sciences, 2022.
ista: Orliac EJ, Trejo Banos D, Ojavee SE, Läll K, Mägi R, Visscher PM, Robinson
MR. 2022. Improving GWAS discovery and genomic prediction accuracy in biobank
data. Proceedings of the National Academy of Sciences of the United States of
America. 119(31), e2121279119.
mla: Orliac, Etienne J., et al. “Improving GWAS Discovery and Genomic Prediction
Accuracy in Biobank Data.” Proceedings of the National Academy of Sciences
of the United States of America, vol. 119, no. 31, e2121279119, Proceedings
of the National Academy of Sciences, 2022, doi:10.1073/pnas.2121279119.
short: E.J. Orliac, D. Trejo Banos, S.E. Ojavee, K. Läll, R. Mägi, P.M. Visscher,
M.R. Robinson, Proceedings of the National Academy of Sciences of the United States
of America 119 (2022).
date_created: 2022-08-07T22:01:56Z
date_published: 2022-07-29T00:00:00Z
date_updated: 2023-08-03T12:40:38Z
day: '29'
ddc:
- '570'
department:
- _id: MaRo
doi: 10.1073/pnas.2121279119
external_id:
isi:
- '000881496900003'
file:
- access_level: open_access
checksum: b5d2024e19fbad6f85a5e384e44d0f3b
content_type: application/pdf
creator: dernst
date_created: 2022-08-08T07:31:19Z
date_updated: 2022-08-08T07:31:19Z
file_id: '11745'
file_name: 2022_PNAS_Orliac.pdf
file_size: 1001164
relation: main_file
success: 1
file_date_updated: 2022-08-08T07:31:19Z
has_accepted_license: '1'
intvolume: ' 119'
isi: 1
issue: '31'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Proceedings of the National Academy of Sciences of the United States
of America
publication_identifier:
eissn:
- 1091-6490
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
related_material:
record:
- id: '13064'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Improving GWAS discovery and genomic prediction accuracy in biobank data
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 119
year: '2022'
...
---
_id: '11734'
abstract:
- lang: eng
text: Mineral nutrition is one of the key environmental factors determining plant
development and growth. Nitrate is the major form of macronutrient nitrogen that
plants take up from the soil. Fluctuating availability or deficiency of this element
severely limits plant growth and negatively affects crop production in the agricultural
system. To cope with the heterogeneity of nitrate distribution in soil, plants
evolved a complex regulatory mechanism that allows rapid adjustment of physiological
and developmental processes to the status of this nutrient. The root, as a major
exploitation organ that controls the uptake of nitrate to the plant body, acts
as a regulatory hub that, according to nitrate availability, coordinates the growth
and development of other plant organs. Here, we identified a regulatory framework,
where cytokinin response factors (CRFs) play a central role as a molecular readout
of the nitrate status in roots to guide shoot adaptive developmental response.
We show that nitrate-driven activation of NLP7, a master regulator of nitrate
response in plants, fine tunes biosynthesis of cytokinin in roots and its translocation
to shoots where it enhances expression of CRFs. CRFs, through direct transcriptional
regulation of PIN auxin transporters, promote the flow of auxin and thereby stimulate
the development of shoot organs.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
acknowledgement: "We acknowledge Hana Semeradova, Juan Carlos Montesinos, Nicola Cavallari,
Marc¸al Gallem\x03ı, Kaori Tabata, Andrej Hurn\x03y, and Sascha Waidmann for sharing
materials; and Marina Borges Osorio for critical reading of the manuscript. Work
in the E. Benkova laboratory was supported by the Austrian Science Fund (FWF01_I1774S)
to K.O., R.A., and E. Benkova. We acknowledge the Bioimaging Facility and Life Science
Facilities of the Institute of Science\r\nand Technology Austria. We give sincere
thanks to Hana Martınkova and Petra Amakorova for their help with cytokinin analyses.
This work was funded by the Czech Science Foundation (Project No. 19-00973S)."
article_number: e2122460119
article_processing_charge: No
article_type: original
author:
- first_name: Rashed
full_name: Abualia, Rashed
id: 4827E134-F248-11E8-B48F-1D18A9856A87
last_name: Abualia
orcid: 0000-0002-9357-9415
- first_name: Krisztina
full_name: Ötvös, Krisztina
id: 29B901B0-F248-11E8-B48F-1D18A9856A87
last_name: Ötvös
orcid: 0000-0002-5503-4983
- first_name: Ondřej
full_name: Novák, Ondřej
last_name: Novák
- first_name: Eleonore
full_name: Bouguyon, Eleonore
last_name: Bouguyon
- first_name: Kevin
full_name: Domanegg, Kevin
id: a24c7829-16e8-11ed-8527-c4d36ffb7539
last_name: Domanegg
orcid: 0000-0002-1215-4264
- first_name: Anne
full_name: Krapp, Anne
last_name: Krapp
- first_name: Philip
full_name: Nacry, Philip
last_name: Nacry
- first_name: Alain
full_name: Gojon, Alain
last_name: Gojon
- first_name: Benoit
full_name: Lacombe, Benoit
last_name: Lacombe
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
citation:
ama: Abualia R, Ötvös K, Novák O, et al. Molecular framework integrating nitrate
sensing in root and auxin-guided shoot adaptive responses. Proceedings of the
National Academy of Sciences of the United States of America. 2022;119(31).
doi:10.1073/pnas.2122460119
apa: Abualia, R., Ötvös, K., Novák, O., Bouguyon, E., Domanegg, K., Krapp, A., …
Benková, E. (2022). Molecular framework integrating nitrate sensing in root and
auxin-guided shoot adaptive responses. Proceedings of the National Academy
of Sciences of the United States of America. Proceedings of the National Academy
of Sciences. https://doi.org/10.1073/pnas.2122460119
chicago: Abualia, Rashed, Krisztina Ötvös, Ondřej Novák, Eleonore Bouguyon, Kevin
Domanegg, Anne Krapp, Philip Nacry, Alain Gojon, Benoit Lacombe, and Eva Benková.
“Molecular Framework Integrating Nitrate Sensing in Root and Auxin-Guided Shoot
Adaptive Responses.” Proceedings of the National Academy of Sciences of the
United States of America. Proceedings of the National Academy of Sciences,
2022. https://doi.org/10.1073/pnas.2122460119.
ieee: R. Abualia et al., “Molecular framework integrating nitrate sensing
in root and auxin-guided shoot adaptive responses,” Proceedings of the National
Academy of Sciences of the United States of America, vol. 119, no. 31. Proceedings
of the National Academy of Sciences, 2022.
ista: Abualia R, Ötvös K, Novák O, Bouguyon E, Domanegg K, Krapp A, Nacry P, Gojon
A, Lacombe B, Benková E. 2022. Molecular framework integrating nitrate sensing
in root and auxin-guided shoot adaptive responses. Proceedings of the National
Academy of Sciences of the United States of America. 119(31), e2122460119.
mla: Abualia, Rashed, et al. “Molecular Framework Integrating Nitrate Sensing in
Root and Auxin-Guided Shoot Adaptive Responses.” Proceedings of the National
Academy of Sciences of the United States of America, vol. 119, no. 31, e2122460119,
Proceedings of the National Academy of Sciences, 2022, doi:10.1073/pnas.2122460119.
short: R. Abualia, K. Ötvös, O. Novák, E. Bouguyon, K. Domanegg, A. Krapp, P. Nacry,
A. Gojon, B. Lacombe, E. Benková, Proceedings of the National Academy of Sciences
of the United States of America 119 (2022).
date_created: 2022-08-07T22:01:57Z
date_published: 2022-07-25T00:00:00Z
date_updated: 2023-08-03T12:39:29Z
day: '25'
ddc:
- '570'
department:
- _id: EvBe
doi: 10.1073/pnas.2122460119
external_id:
isi:
- '000881496900007'
pmid:
- '35878040'
file:
- access_level: open_access
checksum: 6e97dedc281247fc3fe238a209f14af0
content_type: application/pdf
creator: dernst
date_created: 2022-08-08T07:09:58Z
date_updated: 2022-08-08T07:09:58Z
file_id: '11744'
file_name: 2022_PNAS_Abualia.pdf
file_size: 3092330
relation: main_file
success: 1
file_date_updated: 2022-08-08T07:09:58Z
has_accepted_license: '1'
intvolume: ' 119'
isi: 1
issue: '31'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2542D156-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I 1774-B16
name: Hormone cross-talk drives nutrient dependent plant development
publication: Proceedings of the National Academy of Sciences of the United States
of America
publication_identifier:
eissn:
- 1091-6490
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Molecular framework integrating nitrate sensing in root and auxin-guided shoot
adaptive responses
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 119
year: '2022'
...
---
_id: '11735'
abstract:
- lang: eng
text: "Interlocking puzzles are intriguing geometric games where the puzzle pieces
are held together based on their geometric arrangement, preventing the puzzle
from falling apart. High-level-of-difficulty, or simply high-level, interlocking
puzzles are a subclass of interlocking puzzles that require multiple moves to
take out the first subassembly from the puzzle. Solving a high-level interlocking
puzzle is a challenging task since one has to explore many different configurations
of the puzzle pieces until reaching a configuration where the first subassembly
can be taken out. Designing a high-level interlocking puzzle with a user-specified
level of difficulty is even harder since the puzzle pieces have to be interlocking
in all the configurations before the first subassembly is taken out.\r\n\r\nIn
this paper, we present a computational approach to design high-level interlocking
puzzles. The core idea is to represent all possible configurations of an interlocking
puzzle as well as transitions among these configurations using a rooted, undirected
graph called a disassembly graph and leverage this graph to find a disassembly
plan that requires a minimal number of moves to take out the first subassembly
from the puzzle. At the design stage, our algorithm iteratively constructs the
geometry of each puzzle piece to expand the disassembly graph incrementally, aiming
to achieve a user-specified level of difficulty. We show that our approach allows
efficient generation of high-level interlocking puzzles of various shape complexities,
including new solutions not attainable by state-of-the-art approaches."
acknowledgement: "We thank the reviewers for the valuable comments, David Gontier
for sharing the source code of the baseline design approach, Christian Hafner for
proofreading the paper, Keenan Crane for the 3D model of Cow, and Thingiverse for
the 3D models of Moai and Owl. This work was supported by the SUTD Start-up Research
Grant (Number: SRG ISTD 2019 148), the Swiss National Science Foundation (NCCR Digital
Fabrication Agreement #51NF40-141853), and\r\nthe European Research Council (ERC)
under the European Union’s Horizon 2020 research and innovation programme (Grant
Agreement No 715767 – MATERIALIZABLE)."
article_number: '150'
article_processing_charge: No
article_type: original
author:
- first_name: Rulin
full_name: Chen, Rulin
last_name: Chen
- first_name: Ziqi
full_name: Wang, Ziqi
last_name: Wang
- first_name: Peng
full_name: Song, Peng
last_name: Song
- first_name: Bernd
full_name: Bickel, Bernd
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
citation:
ama: Chen R, Wang Z, Song P, Bickel B. Computational design of high-level interlocking
puzzles. ACM Transactions on Graphics. 2022;41(4). doi:10.1145/3528223.3530071
apa: Chen, R., Wang, Z., Song, P., & Bickel, B. (2022). Computational design
of high-level interlocking puzzles. ACM Transactions on Graphics. Association
for Computing Machinery. https://doi.org/10.1145/3528223.3530071
chicago: Chen, Rulin, Ziqi Wang, Peng Song, and Bernd Bickel. “Computational Design
of High-Level Interlocking Puzzles.” ACM Transactions on Graphics. Association
for Computing Machinery, 2022. https://doi.org/10.1145/3528223.3530071.
ieee: R. Chen, Z. Wang, P. Song, and B. Bickel, “Computational design of high-level
interlocking puzzles,” ACM Transactions on Graphics, vol. 41, no. 4. Association
for Computing Machinery, 2022.
ista: Chen R, Wang Z, Song P, Bickel B. 2022. Computational design of high-level
interlocking puzzles. ACM Transactions on Graphics. 41(4), 150.
mla: Chen, Rulin, et al. “Computational Design of High-Level Interlocking Puzzles.”
ACM Transactions on Graphics, vol. 41, no. 4, 150, Association for Computing
Machinery, 2022, doi:10.1145/3528223.3530071.
short: R. Chen, Z. Wang, P. Song, B. Bickel, ACM Transactions on Graphics 41 (2022).
date_created: 2022-08-07T22:01:57Z
date_published: 2022-07-22T00:00:00Z
date_updated: 2023-08-03T13:21:22Z
day: '22'
ddc:
- '000'
department:
- _id: BeBi
doi: 10.1145/3528223.3530071
ec_funded: 1
external_id:
isi:
- '000830989200018'
file:
- access_level: open_access
checksum: 0b51651be45b1b33f2072bd5d2686c69
content_type: application/pdf
creator: bbickel
date_created: 2022-08-28T07:56:19Z
date_updated: 2022-08-28T07:56:19Z
file_id: '11992'
file_name: Chen-2022-High-LevelPuzzle_authorVersion.pdf
file_size: 16896871
relation: main_file
success: 1
file_date_updated: 2022-08-28T07:56:19Z
has_accepted_license: '1'
intvolume: ' 41'
isi: 1
issue: '4'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
project:
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '715767'
name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
Modeling'
publication: ACM Transactions on Graphics
publication_identifier:
eissn:
- 1557-7368
issn:
- 0730-0301
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
link:
- description: News on ISTA website
relation: press_release
url: https://ista.ac.at/en/news/unlocking-interlocking-riddles/
scopus_import: '1'
status: public
title: Computational design of high-level interlocking puzzles
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 41
year: '2022'
...
---
_id: '11736'
abstract:
- lang: eng
text: "This paper introduces a methodology for inverse-modeling of yarn-level mechanics
of cloth, based on the mechanical response of fabrics in the real world. We compiled
a database from physical tests of several different knitted fabrics used in the
textile industry. These data span different types of complex knit patterns, yarn
compositions, and fabric finishes, and the results demonstrate diverse physical
properties like stiffness, nonlinearity, and anisotropy.\r\n\r\nWe then develop
a system for approximating these mechanical responses with yarn-level cloth simulation.
To do so, we introduce an efficient pipeline for converting between fabric-level
data and yarn-level simulation, including a novel swatch-level approximation for
speeding up computation, and some small-but-necessary extensions to yarn-level
models used in computer graphics. The dataset used for this paper can be found
at http://mslab.es/projects/YarnLevelFabrics."
acknowledged_ssus:
- _id: ScienComp
acknowledgement: We wish to thank the anonymous reviewers for their helpful comments.
To develop this project, we were helped by many people both at Under Armour (Clay
Dean, Randall Harward, Kyle Blakely, Craig Simile, Michael Seiz, Brooke Malone,
Brittainy McFarland, Emilie Phan, Lindsey Kern, Courtney Oswald, Haley Barkley,
Bob Chin, Adam Bayer, Connie Kwok, Marielle Newman, Nick Pence, Allison Hicks, Allison
White, Candace Rubenstein, Jeremy Stangland, Fred Fagergren, Michael Mazzoleni,
Nathaniel Berry, Manuel Frank) and SEDDI (Gabriel Cirio, Alejandro Rodríguez, Sofía
Dominguez, Alicia Nicas, Elena Garcés, Daniel Rodríguez, David Pascual, Manuel Godoy,
Sergio Suja, Sergio Ruiz, Roberto Condori, Alberto Martín, Graham Sullivan). We
also thank the members of the Visual Computing Group at IST Austria and the Multimodal
Simulation Lab at URJC for their feedback. This research was supported by the Scientific
Service Units (SSU) of IST Austria through resources provided by Scientific Computing,
and it was funded in part by the European Research Council (ERC Consolidator Grant
772738 TouchDesign).
article_number: '65'
article_processing_charge: No
article_type: original
author:
- first_name: Georg
full_name: Sperl, Georg
id: 4DD40360-F248-11E8-B48F-1D18A9856A87
last_name: Sperl
- first_name: Rosa M.
full_name: Sánchez-Banderas, Rosa M.
last_name: Sánchez-Banderas
- first_name: Manwen
full_name: Li, Manwen
last_name: Li
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
- first_name: Miguel A.
full_name: Otaduy, Miguel A.
last_name: Otaduy
citation:
ama: Sperl G, Sánchez-Banderas RM, Li M, Wojtan C, Otaduy MA. Estimation of yarn-level
simulation models for production fabrics. ACM Transactions on Graphics.
2022;41(4). doi:10.1145/3528223.3530167
apa: Sperl, G., Sánchez-Banderas, R. M., Li, M., Wojtan, C., & Otaduy, M. A.
(2022). Estimation of yarn-level simulation models for production fabrics. ACM
Transactions on Graphics. Association for Computing Machinery. https://doi.org/10.1145/3528223.3530167
chicago: Sperl, Georg, Rosa M. Sánchez-Banderas, Manwen Li, Chris Wojtan, and Miguel
A. Otaduy. “Estimation of Yarn-Level Simulation Models for Production Fabrics.”
ACM Transactions on Graphics. Association for Computing Machinery, 2022.
https://doi.org/10.1145/3528223.3530167.
ieee: G. Sperl, R. M. Sánchez-Banderas, M. Li, C. Wojtan, and M. A. Otaduy, “Estimation
of yarn-level simulation models for production fabrics,” ACM Transactions on
Graphics, vol. 41, no. 4. Association for Computing Machinery, 2022.
ista: Sperl G, Sánchez-Banderas RM, Li M, Wojtan C, Otaduy MA. 2022. Estimation
of yarn-level simulation models for production fabrics. ACM Transactions on Graphics.
41(4), 65.
mla: Sperl, Georg, et al. “Estimation of Yarn-Level Simulation Models for Production
Fabrics.” ACM Transactions on Graphics, vol. 41, no. 4, 65, Association
for Computing Machinery, 2022, doi:10.1145/3528223.3530167.
short: G. Sperl, R.M. Sánchez-Banderas, M. Li, C. Wojtan, M.A. Otaduy, ACM Transactions
on Graphics 41 (2022).
date_created: 2022-08-07T22:01:58Z
date_published: 2022-07-22T00:00:00Z
date_updated: 2023-08-03T12:38:30Z
day: '22'
department:
- _id: ChWo
doi: 10.1145/3528223.3530167
external_id:
isi:
- '000830989200114'
intvolume: ' 41'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1145/3528223.3530167
month: '07'
oa: 1
oa_version: Published Version
publication: ACM Transactions on Graphics
publication_identifier:
eissn:
- 1557-7368
issn:
- 0730-0301
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
link:
- description: News on the ISTA website
relation: press_release
url: https://ista.ac.at/en/news/digital-yarn-real-socks/
record:
- id: '12358'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Estimation of yarn-level simulation models for production fabrics
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 41
year: '2022'
...