---
_id: '11470'
abstract:
- lang: eng
  text: Many-body localization (MBL) is an example of a dynamical phase of matter
    that avoids thermalization. While the MBL phase is robust to weak local perturbations,
    the fate of an MBL system coupled to a thermalizing quantum system that represents
    a “heat bath” is an open question that is actively investigated theoretically
    and experimentally. In this work, we consider the stability of an Anderson insulator
    with a finite density of particles interacting with a single mobile impurity—a
    small quantum bath. We give perturbative arguments that support the stability
    of localization in the strong interaction regime. Large-scale tensor network simulations
    of dynamics are employed to corroborate the presence of the localized phase and
    give quantitative predictions in the thermodynamic limit. We develop a phenomenological
    description of the dynamics in the strong interaction regime, and we demonstrate
    that the impurity effectively turns the Anderson insulator into an MBL phase,
    giving rise to nontrivial entanglement dynamics well captured by our phenomenology.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: We acknowledge useful discussions with M. Ljubotina. P. B., A. M.,
  and M. S. were supported by the European Research Council (ERC) under the European
  Union’s Horizon 2020 research and innovation program (Grant Agreement No. 850899).
  D.A. was supported by the Swiss National Science Foundation and by the European
  Research Council (ERC) under the European Union’s Horizon 2020 research and innovation
  program (Grant Agreement No. 864597). The development of parallel TEBD code was
  was supported by S. Elefante from the Scientific Computing (SciComp) that is part
  of Scientific Service Units (SSU) of IST Austria. Some of the computations were
  performed on the Baobab cluster of the University of Geneva.
article_number: L220203
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Pietro
  full_name: Brighi, Pietro
  id: 4115AF5C-F248-11E8-B48F-1D18A9856A87
  last_name: Brighi
  orcid: 0000-0002-7969-2729
- first_name: Alexios A.
  full_name: Michailidis, Alexios A.
  last_name: Michailidis
- first_name: Dmitry A.
  full_name: Abanin, Dmitry A.
  last_name: Abanin
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
citation:
  ama: Brighi P, Michailidis AA, Abanin DA, Serbyn M. Propagation of many-body localization
    in an Anderson insulator. <i>Physical Review B</i>. 2022;105(22). doi:<a href="https://doi.org/10.1103/physrevb.105.l220203">10.1103/physrevb.105.l220203</a>
  apa: Brighi, P., Michailidis, A. A., Abanin, D. A., &#38; Serbyn, M. (2022). Propagation
    of many-body localization in an Anderson insulator. <i>Physical Review B</i>.
    American Physical Society. <a href="https://doi.org/10.1103/physrevb.105.l220203">https://doi.org/10.1103/physrevb.105.l220203</a>
  chicago: Brighi, Pietro, Alexios A. Michailidis, Dmitry A. Abanin, and Maksym Serbyn.
    “Propagation of Many-Body Localization in an Anderson Insulator.” <i>Physical
    Review B</i>. American Physical Society, 2022. <a href="https://doi.org/10.1103/physrevb.105.l220203">https://doi.org/10.1103/physrevb.105.l220203</a>.
  ieee: P. Brighi, A. A. Michailidis, D. A. Abanin, and M. Serbyn, “Propagation of
    many-body localization in an Anderson insulator,” <i>Physical Review B</i>, vol.
    105, no. 22. American Physical Society, 2022.
  ista: Brighi P, Michailidis AA, Abanin DA, Serbyn M. 2022. Propagation of many-body
    localization in an Anderson insulator. Physical Review B. 105(22), L220203.
  mla: Brighi, Pietro, et al. “Propagation of Many-Body Localization in an Anderson
    Insulator.” <i>Physical Review B</i>, vol. 105, no. 22, L220203, American Physical
    Society, 2022, doi:<a href="https://doi.org/10.1103/physrevb.105.l220203">10.1103/physrevb.105.l220203</a>.
  short: P. Brighi, A.A. Michailidis, D.A. Abanin, M. Serbyn, Physical Review B 105
    (2022).
date_created: 2022-06-29T20:20:47Z
date_published: 2022-06-27T00:00:00Z
date_updated: 2023-08-03T07:23:52Z
day: '27'
department:
- _id: MaSe
doi: 10.1103/physrevb.105.l220203
ec_funded: 1
external_id:
  arxiv:
  - '2109.07332'
  isi:
  - '000823050000012'
intvolume: '       105'
isi: 1
issue: '22'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2109.07332'
month: '06'
oa: 1
oa_version: Preprint
project:
- _id: 23841C26-32DE-11EA-91FC-C7463DDC885E
  call_identifier: H2020
  grant_number: '850899'
  name: 'Non-Ergodic Quantum Matter: Universality, Dynamics and Control'
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  record:
  - id: '12732'
    relation: dissertation_contains
    status: public
status: public
title: Propagation of many-body localization in an Anderson insulator
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 105
year: '2022'
...
---
_id: '11471'
abstract:
- lang: eng
  text: 'Variational quantum algorithms are promising algorithms for achieving quantum
    advantage on nearterm devices. The quantum hardware is used to implement a variational
    wave function and measure observables, whereas the classical computer is used
    to store and update the variational parameters. The optimization landscape of
    expressive variational ansätze is however dominated by large regions in parameter
    space, known as barren plateaus, with vanishing gradients, which prevents efficient
    optimization. In this work we propose a general algorithm to avoid barren plateaus
    in the initialization and throughout the optimization. To this end we define a
    notion of weak barren plateaus (WBPs) based on the entropies of local reduced
    density matrices. The presence of WBPs can be efficiently quantified using recently
    introduced shadow tomography of the quantum state with a classical computer. We
    demonstrate that avoidance of WBPs suffices to ensure sizable gradients in the
    initialization. In addition, we demonstrate that decreasing the gradient step
    size, guided by the entropies allows WBPs to be avoided during the optimization
    process. This paves the way for efficient barren plateau-free optimization on
    near-term devices. '
acknowledgement: "We thank Marco Cerezo, Zoe Holmes, and Nicholas Hunter-Jones for
  fruitful discussion and valuable feedback. We also acknowledge Adam Smith, Johannes
  Jakob Meyer, and Victor V. Albert for comments on the paper. The simulations were
  performed in the Julia programming\r\nlanguage [65] using the Yao module [66]. S.H.S.,
  R.A.M., A.A.M. and M.S. acknowledge support by the European Research Council (ERC)
  under the European Union’s Horizon 2020 research and innovation program (Grant Agreement
  No. 850899)."
article_number: '020365'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Stefan
  full_name: Sack, Stefan
  id: dd622248-f6e0-11ea-865d-ce382a1c81a5
  last_name: Sack
  orcid: 0000-0001-5400-8508
- first_name: Raimel A
  full_name: Medina Ramos, Raimel A
  id: CE680B90-D85A-11E9-B684-C920E6697425
  last_name: Medina Ramos
  orcid: 0000-0002-5383-2869
- first_name: Alexios
  full_name: Michailidis, Alexios
  id: 36EBAD38-F248-11E8-B48F-1D18A9856A87
  last_name: Michailidis
  orcid: 0000-0002-8443-1064
- first_name: Richard
  full_name: Kueng, Richard
  last_name: Kueng
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
citation:
  ama: Sack S, Medina Ramos RA, Michailidis A, Kueng R, Serbyn M. Avoiding barren
    plateaus using classical shadows. <i>PRX Quantum</i>. 2022;3(2). doi:<a href="https://doi.org/10.1103/prxquantum.3.020365">10.1103/prxquantum.3.020365</a>
  apa: Sack, S., Medina Ramos, R. A., Michailidis, A., Kueng, R., &#38; Serbyn, M.
    (2022). Avoiding barren plateaus using classical shadows. <i>PRX Quantum</i>.
    American Physical Society. <a href="https://doi.org/10.1103/prxquantum.3.020365">https://doi.org/10.1103/prxquantum.3.020365</a>
  chicago: Sack, Stefan, Raimel A Medina Ramos, Alexios Michailidis, Richard Kueng,
    and Maksym Serbyn. “Avoiding Barren Plateaus Using Classical Shadows.” <i>PRX
    Quantum</i>. American Physical Society, 2022. <a href="https://doi.org/10.1103/prxquantum.3.020365">https://doi.org/10.1103/prxquantum.3.020365</a>.
  ieee: S. Sack, R. A. Medina Ramos, A. Michailidis, R. Kueng, and M. Serbyn, “Avoiding
    barren plateaus using classical shadows,” <i>PRX Quantum</i>, vol. 3, no. 2. American
    Physical Society, 2022.
  ista: Sack S, Medina Ramos RA, Michailidis A, Kueng R, Serbyn M. 2022. Avoiding
    barren plateaus using classical shadows. PRX Quantum. 3(2), 020365.
  mla: Sack, Stefan, et al. “Avoiding Barren Plateaus Using Classical Shadows.” <i>PRX
    Quantum</i>, vol. 3, no. 2, 020365, American Physical Society, 2022, doi:<a href="https://doi.org/10.1103/prxquantum.3.020365">10.1103/prxquantum.3.020365</a>.
  short: S. Sack, R.A. Medina Ramos, A. Michailidis, R. Kueng, M. Serbyn, PRX Quantum
    3 (2022).
date_created: 2022-06-29T20:21:32Z
date_published: 2022-06-29T00:00:00Z
date_updated: 2023-12-13T14:47:24Z
day: '29'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1103/prxquantum.3.020365
ec_funded: 1
external_id:
  arxiv:
  - '2201.08194'
  isi:
  - '000822564300001'
file:
- access_level: open_access
  checksum: a7706b28d24a0e32a55ea04b82a2df43
  content_type: application/pdf
  creator: dernst
  date_created: 2022-06-30T07:14:48Z
  date_updated: 2022-06-30T07:14:48Z
  file_id: '11472'
  file_name: 2022_PRXQuantum_Sack.pdf
  file_size: 4231591
  relation: main_file
  success: 1
file_date_updated: 2022-06-30T07:14:48Z
has_accepted_license: '1'
intvolume: '         3'
isi: 1
issue: '2'
keyword:
- General Medicine
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 23841C26-32DE-11EA-91FC-C7463DDC885E
  call_identifier: H2020
  grant_number: '850899'
  name: 'Non-Ergodic Quantum Matter: Universality, Dynamics and Control'
publication: PRX Quantum
publication_identifier:
  issn:
  - 2691-3399
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  record:
  - id: '14622'
    relation: dissertation_contains
    status: public
status: public
title: Avoiding barren plateaus using classical shadows
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 3
year: '2022'
...
---
_id: '11473'
abstract:
- lang: eng
  text: "The polaron model is a basic model of quantum field theory describing a single
    particle\r\ninteracting with a bosonic field. It arises in many physical contexts.
    We are mostly concerned\r\nwith models applicable in the context of an impurity
    atom in a Bose-Einstein condensate as\r\nwell as the problem of electrons moving
    in polar crystals.\r\nThe model has a simple structure in which the interaction
    of the particle with the field is given\r\nby a term linear in the field’s creation
    and annihilation operators. In this work, we investigate\r\nthe properties of
    this model by providing rigorous estimates on various energies relevant to the\r\nproblem.
    The estimates are obtained, for the most part, by suitable operator techniques
    which\r\nconstitute the principal mathematical substance of the thesis.\r\nThe
    first application of these techniques is to derive the polaron model rigorously
    from first\r\nprinciples, i.e., from a full microscopic quantum-mechanical many-body
    problem involving an\r\nimpurity in an otherwise homogeneous system. We accomplish
    this for the N + 1 Bose gas\r\nin the mean-field regime by showing that a suitable
    polaron-type Hamiltonian arises at weak\r\ninteractions as a low-energy effective
    theory for this problem.\r\nIn the second part, we investigate rigorously the
    ground state of the model at fixed momentum\r\nand for large values of the coupling
    constant. Qualitatively, the system is expected to display\r\na transition from
    the quasi-particle behavior at small momenta, where the dispersion relation\r\nis
    parabolic and the particle moves through the medium dragging along a cloud of
    phonons, to\r\nthe radiative behavior at larger momenta where the polaron decelerates
    and emits free phonons.\r\nAt the same time, in the strong coupling regime, the
    bosonic field is expected to behave purely\r\nclassically. Accordingly, the effective
    mass of the polaron at strong coupling is conjectured to\r\nbe asymptotically
    equal to the one obtained from the semiclassical counterpart of the problem,\r\nfirst
    studied by Landau and Pekar in the 1940s. For polaron models with regularized
    form\r\nfactors and phonon dispersion relations of superfluid type, i.e., bounded
    below by a linear\r\nfunction of the wavenumbers for all phonon momenta as in
    the interacting Bose gas, we prove\r\nthat for a large window of momenta below
    the radiation threshold, the energy-momentum\r\nrelation at strong coupling is
    indeed essentially a parabola with semi-latus rectum equal to the\r\nLandau–Pekar
    effective mass, as expected.\r\nFor the Fröhlich polaron describing electrons
    in polar crystals where the dispersion relation is\r\nof the optical type and
    the form factor is formally UV–singular due to the nature of the point\r\ncharge-dipole
    interaction, we are able to give the corresponding upper bound. In contrast to\r\nthe
    regular case, this requires the inclusion of the quantum fluctuations of the phonon
    field,\r\nwhich makes the problem considerably more difficult.\r\nThe results
    are supplemented by studies on the absolute ground-state energy at strong coupling,\r\na
    proof of the divergence of the effective mass with the coupling constant for a
    wide class of\r\npolaron models, as well as the discussion of the apparent UV
    singularity of the Fröhlich model\r\nand the application of the techniques used
    for its removal for the energy estimates.\r\n"
acknowledged_ssus:
- _id: SSU
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Krzysztof
  full_name: Mysliwy, Krzysztof
  id: 316457FC-F248-11E8-B48F-1D18A9856A87
  last_name: Mysliwy
citation:
  ama: 'Mysliwy K. Polarons in Bose gases and polar crystals: Some rigorous energy
    estimates. 2022. doi:<a href="https://doi.org/10.15479/at:ista:11473">10.15479/at:ista:11473</a>'
  apa: 'Mysliwy, K. (2022). <i>Polarons in Bose gases and polar crystals: Some rigorous
    energy estimates</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:11473">https://doi.org/10.15479/at:ista:11473</a>'
  chicago: 'Mysliwy, Krzysztof. “Polarons in Bose Gases and Polar Crystals: Some Rigorous
    Energy Estimates.” Institute of Science and Technology Austria, 2022. <a href="https://doi.org/10.15479/at:ista:11473">https://doi.org/10.15479/at:ista:11473</a>.'
  ieee: 'K. Mysliwy, “Polarons in Bose gases and polar crystals: Some rigorous energy
    estimates,” Institute of Science and Technology Austria, 2022.'
  ista: 'Mysliwy K. 2022. Polarons in Bose gases and polar crystals: Some rigorous
    energy estimates. Institute of Science and Technology Austria.'
  mla: 'Mysliwy, Krzysztof. <i>Polarons in Bose Gases and Polar Crystals: Some Rigorous
    Energy Estimates</i>. Institute of Science and Technology Austria, 2022, doi:<a
    href="https://doi.org/10.15479/at:ista:11473">10.15479/at:ista:11473</a>.'
  short: 'K. Mysliwy, Polarons in Bose Gases and Polar Crystals: Some Rigorous Energy
    Estimates, Institute of Science and Technology Austria, 2022.'
date_created: 2022-06-30T12:15:03Z
date_published: 2022-07-01T00:00:00Z
date_updated: 2023-09-07T13:43:52Z
day: '01'
ddc:
- '515'
- '539'
degree_awarded: PhD
department:
- _id: GradSch
- _id: RoSe
doi: 10.15479/at:ista:11473
ec_funded: 1
file:
- access_level: open_access
  checksum: 7970714a20a6052f75fb27a6c3e9976e
  content_type: application/pdf
  creator: kmysliwy
  date_created: 2022-07-05T08:12:56Z
  date_updated: 2022-07-05T08:12:56Z
  file_id: '11486'
  file_name: thes1_no_isbn_2_1b.pdf
  file_size: 1830973
  relation: main_file
  success: 1
- access_level: closed
  checksum: 647a2011fdf56277096c9350fefe1097
  content_type: application/zip
  creator: kmysliwy
  date_created: 2022-07-05T08:15:52Z
  date_updated: 2022-07-05T08:17:12Z
  file_id: '11487'
  file_name: thes_source.zip
  file_size: 5831060
  relation: source_file
file_date_updated: 2022-07-05T08:17:12Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '138'
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '10564'
    relation: part_of_dissertation
    status: public
  - id: '8705'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
title: 'Polarons in Bose gases and polar crystals: Some rigorous energy estimates'
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2022'
...
---
_id: '11476'
abstract:
- lang: eng
  text: "Messaging platforms like Signal are widely deployed and provide strong security
    in an asynchronous setting. It is a challenging problem to construct a protocol
    with similar security guarantees that can efficiently scale to large groups. A
    major bottleneck are the frequent key rotations users need to perform to achieve
    post compromise forward security.\r\n\r\nIn current proposals – most notably in
    TreeKEM (which is part of the IETF’s Messaging Layer Security (MLS) protocol draft)
    – for users in a group of size n to rotate their keys, they must each craft a
    message of size log(n) to be broadcast to the group using an (untrusted) delivery
    server.\r\n\r\nIn larger groups, having users sequentially rotate their keys requires
    too much bandwidth (or takes too long), so variants allowing any T≤n users to
    simultaneously rotate their keys in just 2 communication rounds have been suggested
    (e.g. “Propose and Commit” by MLS). Unfortunately, 2-round concurrent updates
    are either damaging or expensive (or both); i.e. they either result in future
    operations being more costly (e.g. via “blanking” or “tainting”) or are costly
    themselves requiring Ω(T) communication for each user [Bienstock et al., TCC’20].\r\n\r\nIn
    this paper we propose CoCoA; a new scheme that allows for T concurrent updates
    that are neither damaging nor costly. That is, they add no cost to future operations
    yet they only require Ω(log2(n)) communication per user. To circumvent the [Bienstock
    et al.] lower bound, CoCoA increases the number of rounds needed to complete all
    updates from 2 up to (at most) log(n); though typically fewer rounds are needed.\r\n\r\nThe
    key insight of our protocol is the following: in the (non-concurrent version of)
    TreeKEM, a delivery server which gets T concurrent update requests will approve
    one and reject the remaining T−1. In contrast, our server attempts to apply all
    of them. If more than one user requests to rotate the same key during a round,
    the server arbitrarily picks a winner. Surprisingly, we prove that regardless
    of how the server chooses the winners, all previously compromised users will recover
    after at most log(n) such update rounds.\r\n\r\nTo keep the communication complexity
    low, CoCoA is a server-aided CGKA. That is, the delivery server no longer blindly
    forwards packets, but instead actively computes individualized packets tailored
    to each user. As the server is untrusted, this change requires us to develop new
    mechanisms ensuring robustness of the protocol."
acknowledgement: We thank Marta Mularczyk and Yiannis Tselekounis for their very helpful
  feedback on an earlier draft of this paper.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Joël
  full_name: Alwen, Joël
  last_name: Alwen
- first_name: Benedikt
  full_name: Auerbach, Benedikt
  id: D33D2B18-E445-11E9-ABB7-15F4E5697425
  last_name: Auerbach
  orcid: 0000-0002-7553-6606
- first_name: Miguel
  full_name: Cueto Noval, Miguel
  id: ffc563a3-f6e0-11ea-865d-e3cce03d17cc
  last_name: Cueto Noval
- first_name: Karen
  full_name: Klein, Karen
  id: 3E83A2F8-F248-11E8-B48F-1D18A9856A87
  last_name: Klein
- first_name: Guillermo
  full_name: Pascual Perez, Guillermo
  id: 2D7ABD02-F248-11E8-B48F-1D18A9856A87
  last_name: Pascual Perez
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
- first_name: Michael
  full_name: Walter, Michael
  last_name: Walter
citation:
  ama: 'Alwen J, Auerbach B, Cueto Noval M, et al. CoCoA: Concurrent continuous group
    key agreement. In: <i>Advances in Cryptology – EUROCRYPT 2022</i>. Vol 13276.
    Cham: Springer Nature; 2022:815–844. doi:<a href="https://doi.org/10.1007/978-3-031-07085-3_28">10.1007/978-3-031-07085-3_28</a>'
  apa: 'Alwen, J., Auerbach, B., Cueto Noval, M., Klein, K., Pascual Perez, G., Pietrzak,
    K. Z., &#38; Walter, M. (2022). CoCoA: Concurrent continuous group key agreement.
    In <i>Advances in Cryptology – EUROCRYPT 2022</i> (Vol. 13276, pp. 815–844). Cham:
    Springer Nature. <a href="https://doi.org/10.1007/978-3-031-07085-3_28">https://doi.org/10.1007/978-3-031-07085-3_28</a>'
  chicago: 'Alwen, Joël, Benedikt Auerbach, Miguel Cueto Noval, Karen Klein, Guillermo
    Pascual Perez, Krzysztof Z Pietrzak, and Michael Walter. “CoCoA: Concurrent Continuous
    Group Key Agreement.” In <i>Advances in Cryptology – EUROCRYPT 2022</i>, 13276:815–844.
    Cham: Springer Nature, 2022. <a href="https://doi.org/10.1007/978-3-031-07085-3_28">https://doi.org/10.1007/978-3-031-07085-3_28</a>.'
  ieee: 'J. Alwen <i>et al.</i>, “CoCoA: Concurrent continuous group key agreement,”
    in <i>Advances in Cryptology – EUROCRYPT 2022</i>, Trondheim, Norway, 2022, vol.
    13276, pp. 815–844.'
  ista: 'Alwen J, Auerbach B, Cueto Noval M, Klein K, Pascual Perez G, Pietrzak KZ,
    Walter M. 2022. CoCoA: Concurrent continuous group key agreement. Advances in
    Cryptology – EUROCRYPT 2022. EUROCRYPT: Annual International Conference on the
    Theory and Applications of Cryptology and Information Security, LNCS, vol. 13276,
    815–844.'
  mla: 'Alwen, Joël, et al. “CoCoA: Concurrent Continuous Group Key Agreement.” <i>Advances
    in Cryptology – EUROCRYPT 2022</i>, vol. 13276, Springer Nature, 2022, pp. 815–844,
    doi:<a href="https://doi.org/10.1007/978-3-031-07085-3_28">10.1007/978-3-031-07085-3_28</a>.'
  short: J. Alwen, B. Auerbach, M. Cueto Noval, K. Klein, G. Pascual Perez, K.Z. Pietrzak,
    M. Walter, in:, Advances in Cryptology – EUROCRYPT 2022, Springer Nature, Cham,
    2022, pp. 815–844.
conference:
  end_date: 2022-06-03
  location: Trondheim, Norway
  name: 'EUROCRYPT: Annual International Conference on the Theory and Applications
    of Cryptology and Information Security'
  start_date: 2022-05-30
date_created: 2022-06-30T16:48:00Z
date_published: 2022-05-25T00:00:00Z
date_updated: 2023-08-03T07:25:02Z
day: '25'
department:
- _id: GradSch
- _id: KrPi
doi: 10.1007/978-3-031-07085-3_28
ec_funded: 1
external_id:
  isi:
  - '000832305300028'
intvolume: '     13276'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2022/251
month: '05'
oa: 1
oa_version: Preprint
page: 815–844
place: Cham
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '682815'
  name: Teaching Old Crypto New Tricks
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: Advances in Cryptology – EUROCRYPT 2022
publication_identifier:
  eisbn:
  - '9783031070853'
  eissn:
  - 1611-3349
  isbn:
  - '9783031070846'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'CoCoA: Concurrent continuous group key agreement'
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13276
year: '2022'
...
---
_id: '11478'
abstract:
- lang: eng
  text: Cerebral organoids differentiated from human-induced pluripotent stem cells
    (hiPSC) provide a unique opportunity to investigate brain development. However,
    organoids usually lack microglia, brain-resident immune cells, which are present
    in the early embryonic brain and participate in neuronal circuit development.
    Here, we find IBA1+ microglia-like cells alongside retinal cups between week 3
    and 4 in 2.5D culture with an unguided retinal organoid differentiation protocol.
    Microglia do not infiltrate the neuroectoderm and instead enrich within non-pigmented,
    3D-cystic compartments that develop in parallel to the 3D-retinal organoids. When
    we guide the retinal organoid differentiation with low-dosed BMP4, we prevent
    cup development and enhance microglia and 3D-cysts formation. Mass spectrometry
    identifies these 3D-cysts to express mesenchymal and epithelial markers. We confirmed
    this microglia-preferred environment also within the unguided protocol, providing
    insight into microglial behavior and migration and offer a model to study how
    they enter and distribute within the human brain.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
acknowledgement: We thank the scientific service units at ISTA, specifically the lab
  support facility and imaging & optics facility for their support; Nicolas Armel
  for performing the Mass Spectrometry. We thank Alexandra Lang and Tanja Peilnsteiner
  for their help in human brain tissue collection, Rouven Schulz for his insights
  into the functional assays We thank all members of the Siegert group for constant
  feedback on the project and Margaret Maes, Rouven Schulz, and Marco Benevento for
  feedback on the manuscript. This project has received funding from the European
  Research Council (ERC) under the European Union’s Horizon 2020 research and innovation
  program (grant No. 715571 to S.S.) and from the Gesellschaft für Forschungsförderung
  Niederösterreich (grant No. Sc19-017 to V.H.).
article_number: '104580'
article_processing_charge: Yes
article_type: original
author:
- first_name: Katarina
  full_name: Bartalska, Katarina
  id: 4D883232-F248-11E8-B48F-1D18A9856A87
  last_name: Bartalska
- first_name: Verena
  full_name: Hübschmann, Verena
  id: 32B7C918-F248-11E8-B48F-1D18A9856A87
  last_name: Hübschmann
- first_name: Medina
  full_name: Korkut, Medina
  id: 4B51CE74-F248-11E8-B48F-1D18A9856A87
  last_name: Korkut
  orcid: 0000-0003-4309-2251
- first_name: Ryan J
  full_name: Cubero, Ryan J
  id: 850B2E12-9CD4-11E9-837F-E719E6697425
  last_name: Cubero
  orcid: 0000-0003-0002-1867
- first_name: Alessandro
  full_name: Venturino, Alessandro
  id: 41CB84B2-F248-11E8-B48F-1D18A9856A87
  last_name: Venturino
  orcid: 0000-0003-2356-9403
- first_name: Karl
  full_name: Rössler, Karl
  last_name: Rössler
- first_name: Thomas
  full_name: Czech, Thomas
  last_name: Czech
- first_name: Sandra
  full_name: Siegert, Sandra
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
citation:
  ama: Bartalska K, Hübschmann V, Korkut M, et al. A systematic characterization of
    microglia-like cell occurrence during retinal organoid differentiation. <i>iScience</i>.
    2022;25(7). doi:<a href="https://doi.org/10.1016/j.isci.2022.104580">10.1016/j.isci.2022.104580</a>
  apa: Bartalska, K., Hübschmann, V., Korkut, M., Cubero, R. J., Venturino, A., Rössler,
    K., … Siegert, S. (2022). A systematic characterization of microglia-like cell
    occurrence during retinal organoid differentiation. <i>IScience</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.isci.2022.104580">https://doi.org/10.1016/j.isci.2022.104580</a>
  chicago: Bartalska, Katarina, Verena Hübschmann, Medina Korkut, Ryan J Cubero, Alessandro
    Venturino, Karl Rössler, Thomas Czech, and Sandra Siegert. “A Systematic Characterization
    of Microglia-like Cell Occurrence during Retinal Organoid Differentiation.” <i>IScience</i>.
    Elsevier, 2022. <a href="https://doi.org/10.1016/j.isci.2022.104580">https://doi.org/10.1016/j.isci.2022.104580</a>.
  ieee: K. Bartalska <i>et al.</i>, “A systematic characterization of microglia-like
    cell occurrence during retinal organoid differentiation,” <i>iScience</i>, vol.
    25, no. 7. Elsevier, 2022.
  ista: Bartalska K, Hübschmann V, Korkut M, Cubero RJ, Venturino A, Rössler K, Czech
    T, Siegert S. 2022. A systematic characterization of microglia-like cell occurrence
    during retinal organoid differentiation. iScience. 25(7), 104580.
  mla: Bartalska, Katarina, et al. “A Systematic Characterization of Microglia-like
    Cell Occurrence during Retinal Organoid Differentiation.” <i>IScience</i>, vol.
    25, no. 7, 104580, Elsevier, 2022, doi:<a href="https://doi.org/10.1016/j.isci.2022.104580">10.1016/j.isci.2022.104580</a>.
  short: K. Bartalska, V. Hübschmann, M. Korkut, R.J. Cubero, A. Venturino, K. Rössler,
    T. Czech, S. Siegert, IScience 25 (2022).
date_created: 2022-07-03T22:01:33Z
date_published: 2022-07-15T00:00:00Z
date_updated: 2023-11-02T12:21:33Z
day: '15'
ddc:
- '610'
department:
- _id: SaSi
doi: 10.1016/j.isci.2022.104580
ec_funded: 1
external_id:
  isi:
  - '000830428500005'
file:
- access_level: open_access
  checksum: a470b74e1b3796c710189c81a4cd4329
  content_type: application/pdf
  creator: cchlebak
  date_created: 2022-07-04T08:19:25Z
  date_updated: 2022-07-04T08:19:25Z
  file_id: '11480'
  file_name: 2022_iScience_Bartalska.pdf
  file_size: 19400048
  relation: main_file
  success: 1
file_date_updated: 2022-07-04T08:19:25Z
has_accepted_license: '1'
intvolume: '        25'
isi: 1
issue: '7'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 25D4A630-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '715571'
  name: Microglia action towards neuronal circuit formation and function in health
    and disease
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
- _id: 9B99D380-BA93-11EA-9121-9846C619BF3A
  grant_number: SC19-017
  name: How human microglia shape developing neurons during health and inflammation
publication: iScience
publication_identifier:
  eissn:
  - 2589-0042
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  record:
  - id: '12117'
    relation: other
    status: public
scopus_import: '1'
status: public
title: A systematic characterization of microglia-like cell occurrence during retinal
  organoid differentiation
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2022'
...
---
_id: '11488'
abstract:
- lang: eng
  text: Hydrogen Lyα haloes (LAHs) are commonly used as a tracer of the circumgalactic
    medium (CGM) at high redshifts. In this work, we aim to explore the existence
    of Lyα haloes around individual UV-selected galaxies, rather than around Lyα emitters
    (LAEs), at high redshifts. Our sample was continuum-selected with F775W ≤ 27.5,
    and spectroscopic redshifts were assigned or constrained for all the sources thanks
    to the deepest (100- to 140-h) existing Very Large Telescope (VLT)/Multi-Unit
    Spectroscopic Explorer (MUSE) data with adaptive optics. The final sample includes
    21 galaxies that are purely F775W-magnitude selected within the redshift range
    z ≈ 2.9 − 4.4 and within a UV magnitude range −20 ≤ M1500 ≤ −18, thus avoiding
    any bias toward LAEs. We tested whether galaxy’s Lyα emission is significantly
    more extended than the MUSE PSF-convolved continuum component. We find 17 LAHs
    and four non-LAHs. We report the first individual detections of extended Lyα emission
    around non-LAEs. The Lyα halo fraction is thus as high as 81.0−11.2+10.3%, which
    is close to that for LAEs at z = 3 − 6 in the literature. This implies that UV-selected
    galaxies generally have a large amount of hydrogen in their CGM. We derived the
    mean surface brightness (SB) profile for our LAHs with cosmic dimming corrections
    and find that Lyα emission extends to 5.4 arcsec (≃40 physical kpc at the midpoint
    redshift z = 3.6) above the typical 1σ SB limit. The incidence rate of surrounding
    gas detected in Lyα per one-dimensional line of sight per unit redshift, dn/dz,
    is estimated to be 0.76−0.09+0.09 for galaxies with M1500 ≤ −18 mag at z ≃ 3.7.
    Assuming that Lyα emission and absorption arise in the same gas, this suggests,
    based on abundance matching, that LAHs trace the same gas as damped Lyα systems
    (DLAs) and sub-DLAs.
acknowledgement: 'We thank the anonymous referee for constructive comments and suggestions.
  We would like to express our gratitude to Edmund Christian Herenz, Leindert Boogard,
  Miroslava Dessauges, Moupiya Maji, Valentin Mauerhofer, Charlotte Paola Simmonds
  Wagemann, Masami Ouchi, Kazuhiro Shimasaku, Akio Inoue, and Rieko Momose for giving
  insightful comments and suggestions. H.K. is grateful to Liam McCarney for useful
  suggestions on English writing through the UniGE’s Tandems linguistiques. H.K. acknowledges
  support from Swiss Government Excellence Scholarships and Japan Society for the
  Promotion of Science (JSPS) Overseas Research Fellowship. H.K., F.L., and A.V. are
  supported by the SNF grant PP00P2 176808. A.V. and T.G. are supported by the ERC
  Starting Grant 757258“TRIPLE”. This work was supported by the Programme National
  Cosmology et Galaxies (PNCG) of CNRS/INSU with INP and IN2P3, co-funded by CEA and
  CNES. This work is based on observations taken by VLT, which is operated by European
  Southern Observatory. This research made use of Astropy, which is a community-developed
  core Python package for Astronomy (Astropy Collaboration 2013, 2018), and other
  software and packages: MARZ, MPDAF (Piqueras et al. 2019), PHOTUTILS, Numpy (Harris
  et al. 2020), Scipy (Virtanen et al. 2020), and matplotlib (Hunter 2007).'
article_number: A44
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Haruka
  full_name: Kusakabe, Haruka
  last_name: Kusakabe
- first_name: Anne
  full_name: Verhamme, Anne
  last_name: Verhamme
- first_name: Jérémy
  full_name: Blaizot, Jérémy
  last_name: Blaizot
- first_name: Thibault
  full_name: Garel, Thibault
  last_name: Garel
- first_name: Lutz
  full_name: Wisotzki, Lutz
  last_name: Wisotzki
- first_name: Floriane
  full_name: Leclercq, Floriane
  last_name: Leclercq
- first_name: Roland
  full_name: Bacon, Roland
  last_name: Bacon
- first_name: Joop
  full_name: Schaye, Joop
  last_name: Schaye
- first_name: Sofia G.
  full_name: Gallego, Sofia G.
  last_name: Gallego
- first_name: Josephine
  full_name: Kerutt, Josephine
  last_name: Kerutt
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Michael
  full_name: Maseda, Michael
  last_name: Maseda
- first_name: Themiya
  full_name: Nanayakkara, Themiya
  last_name: Nanayakkara
- first_name: Roser
  full_name: Pelló, Roser
  last_name: Pelló
- first_name: Johan
  full_name: Richard, Johan
  last_name: Richard
- first_name: Laurence
  full_name: Tresse, Laurence
  last_name: Tresse
- first_name: Tanya
  full_name: Urrutia, Tanya
  last_name: Urrutia
- first_name: Eloïse
  full_name: Vitte, Eloïse
  last_name: Vitte
citation:
  ama: 'Kusakabe H, Verhamme A, Blaizot J, et al. The MUSE eXtremely Deep Field: Individual
    detections of Ly<i>α</i> haloes around rest-frame UV-selected galaxies at <i>z</i>
    ≃ 2.9–4.4. <i>Astronomy &#38; Astrophysics</i>. 2022;660. doi:<a href="https://doi.org/10.1051/0004-6361/202142302">10.1051/0004-6361/202142302</a>'
  apa: 'Kusakabe, H., Verhamme, A., Blaizot, J., Garel, T., Wisotzki, L., Leclercq,
    F., … Vitte, E. (2022). The MUSE eXtremely Deep Field: Individual detections of
    Ly<i>α</i> haloes around rest-frame UV-selected galaxies at <i>z</i> ≃ 2.9–4.4.
    <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202142302">https://doi.org/10.1051/0004-6361/202142302</a>'
  chicago: 'Kusakabe, Haruka, Anne Verhamme, Jérémy Blaizot, Thibault Garel, Lutz
    Wisotzki, Floriane Leclercq, Roland Bacon, et al. “The MUSE EXtremely Deep Field:
    Individual Detections of Ly<i>α</i> Haloes around Rest-Frame UV-Selected Galaxies
    at <i>z</i> ≃ 2.9–4.4.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2022.
    <a href="https://doi.org/10.1051/0004-6361/202142302">https://doi.org/10.1051/0004-6361/202142302</a>.'
  ieee: 'H. Kusakabe <i>et al.</i>, “The MUSE eXtremely Deep Field: Individual detections
    of Ly<i>α</i> haloes around rest-frame UV-selected galaxies at <i>z</i> ≃ 2.9–4.4,”
    <i>Astronomy &#38; Astrophysics</i>, vol. 660. EDP Sciences, 2022.'
  ista: 'Kusakabe H, Verhamme A, Blaizot J, Garel T, Wisotzki L, Leclercq F, Bacon
    R, Schaye J, Gallego SG, Kerutt J, Matthee JJ, Maseda M, Nanayakkara T, Pelló
    R, Richard J, Tresse L, Urrutia T, Vitte E. 2022. The MUSE eXtremely Deep Field:
    Individual detections of Ly<i>α</i> haloes around rest-frame UV-selected galaxies
    at <i>z</i> ≃ 2.9–4.4. Astronomy &#38; Astrophysics. 660, A44.'
  mla: 'Kusakabe, Haruka, et al. “The MUSE EXtremely Deep Field: Individual Detections
    of Ly<i>α</i> Haloes around Rest-Frame UV-Selected Galaxies at <i>z</i> ≃ 2.9–4.4.”
    <i>Astronomy &#38; Astrophysics</i>, vol. 660, A44, EDP Sciences, 2022, doi:<a
    href="https://doi.org/10.1051/0004-6361/202142302">10.1051/0004-6361/202142302</a>.'
  short: H. Kusakabe, A. Verhamme, J. Blaizot, T. Garel, L. Wisotzki, F. Leclercq,
    R. Bacon, J. Schaye, S.G. Gallego, J. Kerutt, J.J. Matthee, M. Maseda, T. Nanayakkara,
    R. Pelló, J. Richard, L. Tresse, T. Urrutia, E. Vitte, Astronomy &#38; Astrophysics
    660 (2022).
date_created: 2022-07-05T14:27:26Z
date_published: 2022-04-07T00:00:00Z
date_updated: 2022-07-19T09:33:24Z
day: '07'
doi: 10.1051/0004-6361/202142302
extern: '1'
external_id:
  arxiv:
  - '2201.07257'
intvolume: '       660'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: high-redshift / galaxies: formation / galaxies: evolution / cosmology:
  observations'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2201.07257
month: '04'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The MUSE eXtremely Deep Field: Individual detections of Ly<i>α</i> haloes
  around rest-frame UV-selected galaxies at <i>z</i> ≃ 2.9–4.4'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 660
year: '2022'
...
---
_id: '11489'
abstract:
- lang: eng
  text: Much of plant development depends on cell-to-cell redistribution of the plant
    hormone auxin, which is facilitated by the plasma membrane (PM) localized PIN
    FORMED (PIN) proteins. Auxin export activity, developmental roles, subcellular
    trafficking, and polarity of PINs have been well studied, but their structure
    remains elusive besides a rough outline that they contain two groups of 5 alpha-helices
    connected by a large hydrophilic loop (HL). Here, we focus on the PIN1 HL as we
    could produce it in sufficient quantities for biochemical investigations to provide
    insights into its secondary structure. Circular dichroism (CD) studies revealed
    its nature as an intrinsically disordered protein (IDP), manifested by the increase
    of structure content upon thermal melting. Consistent with IDPs serving as interaction
    platforms, PIN1 loops homodimerize. PIN1 HL cytoplasmic overexpression in Arabidopsis
    disrupts early endocytic trafficking of PIN1 and PIN2 and causes defects in the
    cotyledon vasculature formation. In summary, we demonstrate that PIN1 HL has an
    intrinsically disordered nature, which must be considered to gain further structural
    insights. Some secondary structures may form transiently during pairing with known
    and yet-to-be-discovered interactors.
acknowledgement: 'We thank Charo del Genio from Coventry University and Richard Napier
  from the University of Warwick for helpful discussion concerning protein modeling
  and inspiration concerning CD spectroscopy, respectively. We thank Jan Hejatko for
  sharing the published AHP2 construct. We also thank Josef Houser from the core facility
  BIC CEITEC for valuable assistance, discussions, and ideas relating to CD. We acknowledge
  the: Core Facility CELLIM of CEITEC supported by the Czech-BioImaging large RI project
  (LM2018129 funded by MEYS CR), part of the Euro-BioImaging (www.eurobioimaging.eu
  accessed on 1 January 2016) ALM and medical imaging Node (Brno, CZ), CF Biomolecular
  Interactions and Crystallization of CIISB, Instruct-CZ Centre, supported by MEYS
  CR (LM2018127) and European Regional Development Fund-Project “UP CIISB“ (No. CZ.02.1.01/0.0/0.0/18_046/0015974)
  for their support with obtaining scientific data presented in this paper; Plant
  Sciences Core Facility of CEITEC Masaryk University for technical support. Open
  Access Funding by the Austrian Science Fund (FWF).'
article_processing_charge: Yes
article_type: original
author:
- first_name: V
  full_name: Bilanovičová, V
  last_name: Bilanovičová
- first_name: N
  full_name: Rýdza, N
  last_name: Rýdza
- first_name: L
  full_name: Koczka, L
  last_name: Koczka
- first_name: M
  full_name: Hess, M
  last_name: Hess
- first_name: E
  full_name: Feraru, E
  last_name: Feraru
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: T
  full_name: Nodzyński, T
  last_name: Nodzyński
citation:
  ama: Bilanovičová V, Rýdza N, Koczka L, et al. The hydrophilic loop of Arabidopsis
    PIN1 auxin efflux carrier harbors hallmarks of an intrinsically disordered protein.
    <i>International Journal of Molecular Sciences</i>. 2022;23(11):6352. doi:<a href="https://doi.org/10.3390/ijms23116352">10.3390/ijms23116352</a>
  apa: Bilanovičová, V., Rýdza, N., Koczka, L., Hess, M., Feraru, E., Friml, J., &#38;
    Nodzyński, T. (2022). The hydrophilic loop of Arabidopsis PIN1 auxin efflux carrier
    harbors hallmarks of an intrinsically disordered protein. <i>International Journal
    of Molecular Sciences</i>. MDPI. <a href="https://doi.org/10.3390/ijms23116352">https://doi.org/10.3390/ijms23116352</a>
  chicago: Bilanovičová, V, N Rýdza, L Koczka, M Hess, E Feraru, Jiří Friml, and T
    Nodzyński. “The Hydrophilic Loop of Arabidopsis PIN1 Auxin Efflux Carrier Harbors
    Hallmarks of an Intrinsically Disordered Protein.” <i>International Journal of
    Molecular Sciences</i>. MDPI, 2022. <a href="https://doi.org/10.3390/ijms23116352">https://doi.org/10.3390/ijms23116352</a>.
  ieee: V. Bilanovičová <i>et al.</i>, “The hydrophilic loop of Arabidopsis PIN1 auxin
    efflux carrier harbors hallmarks of an intrinsically disordered protein,” <i>International
    Journal of Molecular Sciences</i>, vol. 23, no. 11. MDPI, p. 6352, 2022.
  ista: Bilanovičová V, Rýdza N, Koczka L, Hess M, Feraru E, Friml J, Nodzyński T.
    2022. The hydrophilic loop of Arabidopsis PIN1 auxin efflux carrier harbors hallmarks
    of an intrinsically disordered protein. International Journal of Molecular Sciences.
    23(11), 6352.
  mla: Bilanovičová, V., et al. “The Hydrophilic Loop of Arabidopsis PIN1 Auxin Efflux
    Carrier Harbors Hallmarks of an Intrinsically Disordered Protein.” <i>International
    Journal of Molecular Sciences</i>, vol. 23, no. 11, MDPI, 2022, p. 6352, doi:<a
    href="https://doi.org/10.3390/ijms23116352">10.3390/ijms23116352</a>.
  short: V. Bilanovičová, N. Rýdza, L. Koczka, M. Hess, E. Feraru, J. Friml, T. Nodzyński,
    International Journal of Molecular Sciences 23 (2022) 6352.
date_created: 2022-07-05T15:14:34Z
date_published: 2022-06-06T00:00:00Z
date_updated: 2023-08-09T10:13:57Z
day: '06'
ddc:
- '570'
department:
- _id: JiFr
doi: 10.3390/ijms23116352
external_id:
  isi:
  - '000808733300001'
  pmid:
  - '35683031'
file:
- access_level: open_access
  checksum: e997a57a928ec9d51fad8ce824a05935
  content_type: application/pdf
  creator: cchlebak
  date_created: 2022-07-06T07:36:59Z
  date_updated: 2022-07-06T07:36:59Z
  file_id: '11492'
  file_name: 2022_IntJMolSci_Bilanovicova.pdf
  file_size: 2324542
  relation: main_file
  success: 1
file_date_updated: 2022-07-06T07:36:59Z
has_accepted_license: '1'
intvolume: '        23'
isi: 1
issue: '11'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: '6352'
pmid: 1
project:
- _id: 262EF96E-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P29988
  name: RNA-directed DNA methylation in plant development
publication: International Journal of Molecular Sciences
publication_identifier:
  issn:
  - 1422-0067
publication_status: published
publisher: MDPI
quality_controlled: '1'
status: public
title: The hydrophilic loop of Arabidopsis PIN1 auxin efflux carrier harbors hallmarks
  of an intrinsically disordered protein
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2022'
...
---
_id: '11490'
abstract:
- lang: eng
  text: Directly characterising the first generations of stars in distant galaxies
    is a key quest of observational cosmology. We present a case study of ID53 at
    z = 4.77, the UV-brightest (but L⋆) star-forming galaxy at z > 3 in the MUSE eXtremely
    Deep Field with a mass of ≈109 M⊙. In addition to very strong Lyman-α (Lyα) emission,
    we clearly detect the (stellar) continuum and an N V P Cygni feature, interstellar
    absorption, fine-structure emission and nebular C IV emission lines in the 140
    h spectrum. Continuum emission from two spatially resolved components in Hubble
    Space Telescope data are blended in the MUSE data, but we show that the nebular
    C IV emission originates from a subcomponent of the galaxy. The UV spectrum can
    be fit with recent BPASS stellar population models combined with single-burst
    or continuous star formation histories (SFHs), a standard initial mass function,
    and an attenuation law. Models with a young age and low metallicity (log10(age/yr)
    = 6.5–7.6 and [Z/H] = −2.15 to −1.15) are preferred, but the details depend on
    the assumed SFH. The intrinsic Hα luminosity of the best-fit models is an order
    of magnitude higher than the Hα luminosity inferred from Spitzer/IRAC data, which
    either suggests a high escape fraction of ionising photons, a high relative attenuation
    of nebular to stellar dust, or a complex SFH. The metallicity appears lower than
    the metallicity in more massive galaxies at z = 3 − 5, consistent with the scenario
    according to which younger galaxies have lower metallicities. This chemical immaturity
    likely facilitates Lyα escape, explaining why the Lyα equivalent width is anti-correlated
    with stellar metallicity. Finally, we stress that uncertainties in SFHs impose
    a challenge for future inferences of the stellar metallicity of young galaxies.
    This highlights the need for joint (spatially resolved) analyses of stellar spectra
    and photo-ionisation models.
acknowledgement: We thank the referee for thoughtful and constructive comments that
  have improved the quality of this manuscript. Based on observations collected at
  the European Southern Observatory under ESO programme 1101.A-0127. This work made
  use of v2.2.1 of the Binary Population and Spectral Synthesis (BPASS) models as
  described in Eldridge et al. (2017) and Stanway & Eldridge (2018). A.F. acknowledges
  the support from grant PRIN MIUR2017-20173ML3WW_001. T.N. acknowledges support from
  Australian Research Council Laureate Fellowship FL180100060.
article_number: A10
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Anna
  full_name: Feltre, Anna
  last_name: Feltre
- first_name: Michael
  full_name: Maseda, Michael
  last_name: Maseda
- first_name: Themiya
  full_name: Nanayakkara, Themiya
  last_name: Nanayakkara
- first_name: Leindert
  full_name: Boogaard, Leindert
  last_name: Boogaard
- first_name: Roland
  full_name: Bacon, Roland
  last_name: Bacon
- first_name: Anne
  full_name: Verhamme, Anne
  last_name: Verhamme
- first_name: Floriane
  full_name: Leclercq, Floriane
  last_name: Leclercq
- first_name: Haruka
  full_name: Kusakabe, Haruka
  last_name: Kusakabe
- first_name: Tanya
  full_name: Urrutia, Tanya
  last_name: Urrutia
- first_name: Lutz
  full_name: Wisotzki, Lutz
  last_name: Wisotzki
citation:
  ama: 'Matthee JJ, Feltre A, Maseda M, et al. Deciphering stellar metallicities in
    the early universe: Case study of a young galaxy at z = 4.77 in the MUSE eXtremely
    Deep Field. <i>Astronomy &#38; Astrophysics</i>. 2022;660. doi:<a href="https://doi.org/10.1051/0004-6361/202142187">10.1051/0004-6361/202142187</a>'
  apa: 'Matthee, J. J., Feltre, A., Maseda, M., Nanayakkara, T., Boogaard, L., Bacon,
    R., … Wisotzki, L. (2022). Deciphering stellar metallicities in the early universe:
    Case study of a young galaxy at z = 4.77 in the MUSE eXtremely Deep Field. <i>Astronomy
    &#38; Astrophysics</i>. EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202142187">https://doi.org/10.1051/0004-6361/202142187</a>'
  chicago: 'Matthee, Jorryt J, Anna Feltre, Michael Maseda, Themiya Nanayakkara, Leindert
    Boogaard, Roland Bacon, Anne Verhamme, et al. “Deciphering Stellar Metallicities
    in the Early Universe: Case Study of a Young Galaxy at z = 4.77 in the MUSE EXtremely
    Deep Field.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2022. <a href="https://doi.org/10.1051/0004-6361/202142187">https://doi.org/10.1051/0004-6361/202142187</a>.'
  ieee: 'J. J. Matthee <i>et al.</i>, “Deciphering stellar metallicities in the early
    universe: Case study of a young galaxy at z = 4.77 in the MUSE eXtremely Deep
    Field,” <i>Astronomy &#38; Astrophysics</i>, vol. 660. EDP Sciences, 2022.'
  ista: 'Matthee JJ, Feltre A, Maseda M, Nanayakkara T, Boogaard L, Bacon R, Verhamme
    A, Leclercq F, Kusakabe H, Urrutia T, Wisotzki L. 2022. Deciphering stellar metallicities
    in the early universe: Case study of a young galaxy at z = 4.77 in the MUSE eXtremely
    Deep Field. Astronomy &#38; Astrophysics. 660, A10.'
  mla: 'Matthee, Jorryt J., et al. “Deciphering Stellar Metallicities in the Early
    Universe: Case Study of a Young Galaxy at z = 4.77 in the MUSE EXtremely Deep
    Field.” <i>Astronomy &#38; Astrophysics</i>, vol. 660, A10, EDP Sciences, 2022,
    doi:<a href="https://doi.org/10.1051/0004-6361/202142187">10.1051/0004-6361/202142187</a>.'
  short: J.J. Matthee, A. Feltre, M. Maseda, T. Nanayakkara, L. Boogaard, R. Bacon,
    A. Verhamme, F. Leclercq, H. Kusakabe, T. Urrutia, L. Wisotzki, Astronomy &#38;
    Astrophysics 660 (2022).
date_created: 2022-07-05T15:25:35Z
date_published: 2022-03-30T00:00:00Z
date_updated: 2022-07-19T09:33:46Z
day: '30'
doi: 10.1051/0004-6361/202142187
extern: '1'
external_id:
  arxiv:
  - '2111.14855'
intvolume: '       660'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: high-redshift / techniques: spectroscopic / galaxies: stellar content
  / galaxies: formation'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2111.14855
month: '03'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Deciphering stellar metallicities in the early universe: Case study of a young
  galaxy at z = 4.77 in the MUSE eXtremely Deep Field'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 660
year: '2022'
...
---
_id: '11497'
abstract:
- lang: eng
  text: "Context. The hydrogen Lyman α line is often the only measurable feature in
    optical spectra of high-redshift galaxies. Its shape and strength are influenced
    by radiative transfer processes and the properties of the underlying stellar population.
    High equivalent widths of several hundred Å are especially hard to explain by
    models and could point towards unusual stellar populations, for example with low
    metallicities, young stellar ages, and a top-heavy initial mass function. Other
    aspects influencing equivalent widths are the morphology of the galaxy and its
    gas properties.\r\nAims. The aim of this study is to better understand the connection
    between the Lyman α rest-frame equivalent width (EW0) and spectral properties
    as well as ultraviolet (UV) continuum morphology by obtaining reliable EW0 histograms
    for a statistical sample of galaxies and by assessing the fraction of objects
    with large equivalent widths.\r\nMethods. We used integral field spectroscopy
    from the Multi Unit Spectroscopic Explorer (MUSE) combined with broad-band data
    from the Hubble Space Telescope (HST) to measure EW0. We analysed the emission
    lines of 1920 Lyman α emitters (LAEs) detected in the full MUSE-Wide (one hour
    exposure time) and MUSE-Deep (ten hour exposure time) surveys and found UV continuum
    counterparts in archival HST data. We fitted the UV continuum photometric images
    using the Galfit software to gain morphological information on the rest-UV emission
    and fitted the spectra obtained from MUSE to determine the double peak fraction,
    asymmetry, full-width at half maximum, and flux of the Lyman α line.\r\nResults.
    The two surveys show different histograms of Lyman α EW0. In MUSE-Wide, 20% of
    objects have EW0 > 240 Å, while this fraction is only 11% in MUSE-Deep and ≈16%
    for the full sample. This includes objects without HST continuum counterparts
    (one-third of our sample), for which we give lower limits for EW0. The object
    with the highest securely measured EW0 has EW0 = 589 ± 193 Å (the highest lower
    limit being EW0 = 4464 Å). We investigate the connection between EW0 and Lyman
    α spectral or UV continuum morphological properties.\r\nConclusions. The survey
    depth has to be taken into account when studying EW0 distributions. We find that
    in general, high EW0 objects can have a wide range of spectral and UV morphological
    properties, which might reflect that the underlying causes for high EW0 values
    are equally varied."
acknowledgement: We thank the referee for thoughtful and constructive comments that
  have improved the quality of this manuscript. Based on observations collected at
  the European Southern Observatory under ESO programme 1101.A-0127. This work made
  use of v2.2.1 of the Binary Population and Spectral Synthesis (BPASS) models as
  described in Eldridge et al. (2017) and Stanway & Eldridge (2018). A.F. acknowledges
  the support from grant PRIN MIUR2017-20173ML3WW_001. T.N. acknowledges support from
  Australian Research Council Laureate Fellowship FL180100060.
article_number: '183'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: J.
  full_name: Kerutt, J.
  last_name: Kerutt
- first_name: L.
  full_name: Wisotzki, L.
  last_name: Wisotzki
- first_name: A.
  full_name: Verhamme, A.
  last_name: Verhamme
- first_name: K. B.
  full_name: Schmidt, K. B.
  last_name: Schmidt
- first_name: F.
  full_name: Leclercq, F.
  last_name: Leclercq
- first_name: E. C.
  full_name: Herenz, E. C.
  last_name: Herenz
- first_name: T.
  full_name: Urrutia, T.
  last_name: Urrutia
- first_name: T.
  full_name: Garel, T.
  last_name: Garel
- first_name: T.
  full_name: Hashimoto, T.
  last_name: Hashimoto
- first_name: M.
  full_name: Maseda, M.
  last_name: Maseda
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: H.
  full_name: Kusakabe, H.
  last_name: Kusakabe
- first_name: J.
  full_name: Schaye, J.
  last_name: Schaye
- first_name: J.
  full_name: Richard, J.
  last_name: Richard
- first_name: B.
  full_name: Guiderdoni, B.
  last_name: Guiderdoni
- first_name: V.
  full_name: Mauerhofer, V.
  last_name: Mauerhofer
- first_name: T.
  full_name: Nanayakkara, T.
  last_name: Nanayakkara
- first_name: E.
  full_name: Vitte, E.
  last_name: Vitte
citation:
  ama: Kerutt J, Wisotzki L, Verhamme A, et al. Equivalent widths of Lyman α emitters
    in MUSE-Wide and MUSE-Deep. <i>Astronomy &#38; Astrophysics</i>. 2022;659. doi:<a
    href="https://doi.org/10.1051/0004-6361/202141900">10.1051/0004-6361/202141900</a>
  apa: Kerutt, J., Wisotzki, L., Verhamme, A., Schmidt, K. B., Leclercq, F., Herenz,
    E. C., … Vitte, E. (2022). Equivalent widths of Lyman α emitters in MUSE-Wide
    and MUSE-Deep. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202141900">https://doi.org/10.1051/0004-6361/202141900</a>
  chicago: Kerutt, J., L. Wisotzki, A. Verhamme, K. B. Schmidt, F. Leclercq, E. C.
    Herenz, T. Urrutia, et al. “Equivalent Widths of Lyman α Emitters in MUSE-Wide
    and MUSE-Deep.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2022. <a href="https://doi.org/10.1051/0004-6361/202141900">https://doi.org/10.1051/0004-6361/202141900</a>.
  ieee: J. Kerutt <i>et al.</i>, “Equivalent widths of Lyman α emitters in MUSE-Wide
    and MUSE-Deep,” <i>Astronomy &#38; Astrophysics</i>, vol. 659. EDP Sciences, 2022.
  ista: Kerutt J, Wisotzki L, Verhamme A, Schmidt KB, Leclercq F, Herenz EC, Urrutia
    T, Garel T, Hashimoto T, Maseda M, Matthee JJ, Kusakabe H, Schaye J, Richard J,
    Guiderdoni B, Mauerhofer V, Nanayakkara T, Vitte E. 2022. Equivalent widths of
    Lyman α emitters in MUSE-Wide and MUSE-Deep. Astronomy &#38; Astrophysics. 659,
    183.
  mla: Kerutt, J., et al. “Equivalent Widths of Lyman α Emitters in MUSE-Wide and
    MUSE-Deep.” <i>Astronomy &#38; Astrophysics</i>, vol. 659, 183, EDP Sciences,
    2022, doi:<a href="https://doi.org/10.1051/0004-6361/202141900">10.1051/0004-6361/202141900</a>.
  short: J. Kerutt, L. Wisotzki, A. Verhamme, K.B. Schmidt, F. Leclercq, E.C. Herenz,
    T. Urrutia, T. Garel, T. Hashimoto, M. Maseda, J.J. Matthee, H. Kusakabe, J. Schaye,
    J. Richard, B. Guiderdoni, V. Mauerhofer, T. Nanayakkara, E. Vitte, Astronomy
    &#38; Astrophysics 659 (2022).
date_created: 2022-07-06T08:17:27Z
date_published: 2022-03-25T00:00:00Z
date_updated: 2022-07-19T09:47:16Z
day: '25'
doi: 10.1051/0004-6361/202141900
extern: '1'
external_id:
  arxiv:
  - '2202.06642'
intvolume: '       659'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: high-redshift / galaxies: formation / galaxies: evolution / cosmology:
  observations'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2202.06642
month: '03'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Equivalent widths of Lyman α emitters in MUSE-Wide and MUSE-Deep
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 659
year: '2022'
...
---
_id: '11509'
abstract:
- lang: eng
  text: We present Keck/LRIS follow-up spectroscopy for 13 photometric candidates
    of extremely metal-poor galaxies (EMPGs) selected by a machine-learning technique
    applied to the deep (∼26 AB mag) optical and wide-area (∼500 deg2) Subaru imaging
    data in the EMPRESS survey. Nine out of the 13 candidates are EMPGs with an oxygen
    abundance (O/H) less than ∼10% solar value (O/H)⊙, and four sources are contaminants
    of moderately metal-rich galaxies or no emission-line objects. Notably, two out
    of the nine EMPGs have extremely low stellar masses and oxygen abundances of 5
    × 10⁴x–7 × -10⁵ M⊙ and 2%–3% (O/H)⊙, respectively. With a sample of five EMPGs
    with (Fe/O) measurements, two (three) of which are taken from this study (the
    literature), we confirm that two EMPGs with the lowest (O/H) ratios of ∼2% (O/H)⊙
    show high (Fe/O) ratios of ∼0.1, close to the solar abundance ratio. Comparing
    galaxy chemical enrichment models, we find that the two EMPGs cannot be explained
    by a scenario of metal-poor gas accretion/episodic star formation history due
    to their low (N/O) ratios. We conclude that the two EMPGs can be reproduced by
    the inclusion of bright hypernovae and/or hypothetical pair-instability supernovae
    (SNe) preferentially produced in a metal-poor environment. This conclusion implies
    that primordial galaxies at z ∼ 10 could have a high abundance of Fe that did
    not originate from Type Ia SNe with delays and that Fe may not serve as a cosmic
    clock for primordial galaxies.
acknowledgement: We thank the referee for the valuable comments. We are also grateful
  to Koh Takahashi, Nozomu Tominaga, Chiaki Kobayashi, Yutaka Hirai, and Daichi Kashino
  for having useful discussions. This paper includes data gathered with the 10 m Keck
  Telescope located at W. M. Keck Observatory, Hawaii. We thank the staff of Keck
  Observatory for their help with the observations. The Hyper Suprime-Cam (HSC) collaboration
  includes the astronomical communities of Japan and Taiwan, and Princeton University.
  The HSC instrumentation and software were developed by the National Astronomical
  Observatory of Japan (NAOJ), the Kavli Institute for the Physics and Mathematics
  of the Universe (Kavli IPMU), the University of Tokyo, the High Energy Accelerator
  Research Organization (KEK), the Academia Sinica Institute for Astronomy and Astrophysics
  in Taiwan (ASIAA), and Princeton University. Based on data collected at the Subaru
  Telescope and retrieved from the HSC data archive system, which is operated by the
  Subaru Telescope and Astronomy Data Center at NAOJ. This work was supported by the
  joint research program of the Institute for Cosmic Ray Research (ICRR), University
  of Tokyo. The Cosmic Dawn Center is funded by the Danish National Research Foundation
  under grant No. 140. S.F. acknowledges support from the European Research Council
  (ERC) Consolidator Grant funding scheme (project ConTExt, grant No. 648179). This
  project has received funding from the European Union’s Horizon 2020 research and
  innovation program under the Marie Sklodowska-Curie grant agreement No. 847523 “INTERACTIONS.”
  This work is supported by World Premier International Research Center Initiative
  (WPI Initiative), MEXT, Japan, as well as the KAKENHI Grant-in-Aid for Scientific
  Research (A; 15H02064, 17H01110, 17H01114, 20H00180, and 21H04467) through the Japan
  Society for the Promotion of Science (JSPS). This work has been supported in part
  by JSPS KAKENHI grant Nos. JP17K05382, JP20K04024, and JP21H04499 (K.N.). Yuki Isobe,
  Kimihiko Nakajima, Yuichi Harikane, Takashi Kojima, and Masato Onodera are supported
  by JSPS KAKENHI grant Nos. 21J20785, 20K22373,19J01222, 18J12840, and 17K14257,
  respectively.
article_number: '111'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Yuki
  full_name: Isobe, Yuki
  last_name: Isobe
- first_name: Masami
  full_name: Ouchi, Masami
  last_name: Ouchi
- first_name: Akihiro
  full_name: Suzuki, Akihiro
  last_name: Suzuki
- first_name: Takashi J.
  full_name: Moriya, Takashi J.
  last_name: Moriya
- first_name: Kimihiko
  full_name: Nakajima, Kimihiko
  last_name: Nakajima
- first_name: Ken’ichi
  full_name: Nomoto, Ken’ichi
  last_name: Nomoto
- first_name: Michael
  full_name: Rauch, Michael
  last_name: Rauch
- first_name: Yuichi
  full_name: Harikane, Yuichi
  last_name: Harikane
- first_name: Takashi
  full_name: Kojima, Takashi
  last_name: Kojima
- first_name: Yoshiaki
  full_name: Ono, Yoshiaki
  last_name: Ono
- first_name: Seiji
  full_name: Fujimoto, Seiji
  last_name: Fujimoto
- first_name: Akio K.
  full_name: Inoue, Akio K.
  last_name: Inoue
- first_name: Ji Hoon
  full_name: Kim, Ji Hoon
  last_name: Kim
- first_name: Yutaka
  full_name: Komiyama, Yutaka
  last_name: Komiyama
- first_name: Haruka
  full_name: Kusakabe, Haruka
  last_name: Kusakabe
- first_name: Chien-Hsiu
  full_name: Lee, Chien-Hsiu
  last_name: Lee
- first_name: Michael
  full_name: Maseda, Michael
  last_name: Maseda
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Leo
  full_name: Michel-Dansac, Leo
  last_name: Michel-Dansac
- first_name: Tohru
  full_name: Nagao, Tohru
  last_name: Nagao
- first_name: Themiya
  full_name: Nanayakkara, Themiya
  last_name: Nanayakkara
- first_name: Moka
  full_name: Nishigaki, Moka
  last_name: Nishigaki
- first_name: Masato
  full_name: Onodera, Masato
  last_name: Onodera
- first_name: Yuma
  full_name: Sugahara, Yuma
  last_name: Sugahara
- first_name: Yi
  full_name: Xu, Yi
  last_name: Xu
citation:
  ama: 'Isobe Y, Ouchi M, Suzuki A, et al. EMPRESS. IV. Extremely metal-poor galaxies
    including very low-mass primordial systems with M∗= 10<sup>4</sup>-10<sup>5</sup>⊙
    and 2%–3% (O/H): High (Fe/O) suggestive of metal enrichment by hypernovae/pair-instability
    supernovae. <i>The Astrophysical Journal</i>. 2022;925(2). doi:<a href="https://doi.org/10.3847/1538-4357/ac3509">10.3847/1538-4357/ac3509</a>'
  apa: 'Isobe, Y., Ouchi, M., Suzuki, A., Moriya, T. J., Nakajima, K., Nomoto, K.,
    … Xu, Y. (2022). EMPRESS. IV. Extremely metal-poor galaxies including very low-mass
    primordial systems with M∗= 10<sup>4</sup>-10<sup>5</sup>⊙ and 2%–3% (O/H): High
    (Fe/O) suggestive of metal enrichment by hypernovae/pair-instability supernovae.
    <i>The Astrophysical Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ac3509">https://doi.org/10.3847/1538-4357/ac3509</a>'
  chicago: 'Isobe, Yuki, Masami Ouchi, Akihiro Suzuki, Takashi J. Moriya, Kimihiko
    Nakajima, Ken’ichi Nomoto, Michael Rauch, et al. “EMPRESS. IV. Extremely Metal-Poor
    Galaxies Including Very Low-Mass Primordial Systems with M∗= 10<sup>4</sup>-10<sup>5</sup>⊙
    and 2%–3% (O/H): High (Fe/O) Suggestive of Metal Enrichment by Hypernovae/Pair-Instability
    Supernovae.” <i>The Astrophysical Journal</i>. IOP Publishing, 2022. <a href="https://doi.org/10.3847/1538-4357/ac3509">https://doi.org/10.3847/1538-4357/ac3509</a>.'
  ieee: 'Y. Isobe <i>et al.</i>, “EMPRESS. IV. Extremely metal-poor galaxies including
    very low-mass primordial systems with M∗= 10<sup>4</sup>-10<sup>5</sup>⊙ and 2%–3%
    (O/H): High (Fe/O) suggestive of metal enrichment by hypernovae/pair-instability
    supernovae,” <i>The Astrophysical Journal</i>, vol. 925, no. 2. IOP Publishing,
    2022.'
  ista: 'Isobe Y, Ouchi M, Suzuki A, Moriya TJ, Nakajima K, Nomoto K, Rauch M, Harikane
    Y, Kojima T, Ono Y, Fujimoto S, Inoue AK, Kim JH, Komiyama Y, Kusakabe H, Lee
    C-H, Maseda M, Matthee JJ, Michel-Dansac L, Nagao T, Nanayakkara T, Nishigaki
    M, Onodera M, Sugahara Y, Xu Y. 2022. EMPRESS. IV. Extremely metal-poor galaxies
    including very low-mass primordial systems with M∗= 10<sup>4</sup>-10<sup>5</sup>⊙
    and 2%–3% (O/H): High (Fe/O) suggestive of metal enrichment by hypernovae/pair-instability
    supernovae. The Astrophysical Journal. 925(2), 111.'
  mla: 'Isobe, Yuki, et al. “EMPRESS. IV. Extremely Metal-Poor Galaxies Including
    Very Low-Mass Primordial Systems with M∗= 10<sup>4</sup>-10<sup>5</sup>⊙ and 2%–3%
    (O/H): High (Fe/O) Suggestive of Metal Enrichment by Hypernovae/Pair-Instability
    Supernovae.” <i>The Astrophysical Journal</i>, vol. 925, no. 2, 111, IOP Publishing,
    2022, doi:<a href="https://doi.org/10.3847/1538-4357/ac3509">10.3847/1538-4357/ac3509</a>.'
  short: Y. Isobe, M. Ouchi, A. Suzuki, T.J. Moriya, K. Nakajima, K. Nomoto, M. Rauch,
    Y. Harikane, T. Kojima, Y. Ono, S. Fujimoto, A.K. Inoue, J.H. Kim, Y. Komiyama,
    H. Kusakabe, C.-H. Lee, M. Maseda, J.J. Matthee, L. Michel-Dansac, T. Nagao, T.
    Nanayakkara, M. Nishigaki, M. Onodera, Y. Sugahara, Y. Xu, The Astrophysical Journal
    925 (2022).
date_created: 2022-07-06T12:01:48Z
date_published: 2022-01-31T00:00:00Z
date_updated: 2022-07-21T05:51:25Z
day: '31'
doi: 10.3847/1538-4357/ac3509
extern: '1'
external_id:
  arxiv:
  - '2108.03850'
intvolume: '       925'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2108.03850
month: '01'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'EMPRESS. IV. Extremely metal-poor galaxies including very low-mass primordial
  systems with M∗= 10⁴-10⁵⊙ and 2%–3% (O/H): High (Fe/O) suggestive of metal enrichment
  by hypernovae/pair-instability supernovae'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 925
year: '2022'
...
---
_id: '11510'
abstract:
- lang: eng
  text: Galaxy evolution is driven by a variety of physical processes that are predicted
    to proceed at different rates for different dark matter haloes and environments
    across cosmic times. A record of this evolution is preserved in galaxy stellar
    populations, which we can access using absorption-line spectroscopy. Here we explore
    the large LEGA-C survey (DR3) to investigate the role of the environment and stellar
    mass on stellar populations at z ∼ 0.6–1 in the COSMOS field. Leveraging the statistical
    power and depth of LEGA-C, we reveal significant gradients in Dn4000 and Hδ equivalent
    widths (EWs) distributions over the stellar mass versus environment 2D spaces
    for the massive galaxy population (M > 1010 M⊙) at z ∼ 0.6–1.0. Dn4000 and Hδ
    EWs primarily depend on stellar mass, but they also depend on environment at fixed
    stellar mass. By splitting the sample into centrals and satellites, and in terms
    of star-forming galaxies and quiescent galaxies, we reveal that the significant
    environmental trends of Dn4000 and Hδ EW, when controlling for stellar mass, are
    driven by quiescent galaxies. Regardless of being centrals or satellites, star-forming
    galaxies reveal Dn4000 and Hδ EWs, which depend strongly on their stellar mass
    and are completely independent of the environment at 0.6 < z < 1.0. The environmental
    trends seen for satellite galaxies are fully driven by the trends that hold only
    for quiescent galaxies, combined with the strong environmental dependency of the
    quiescent fraction at fixed stellar mass. Our results are consistent with recent
    predictions from simulations that point toward massive galaxies forming first
    in overdensities or the most compact dark matter haloes.
acknowledgement: We thank the reviewer for several valuable comments that improved
  the clarity of the manuscript. P.F.W. acknowledges the support of the fellowship
  by the East Asian Core Observatories Association. This work is based on observations
  made with ESO VLT Telescopes at the La Silla Paranal Observatory under programmes
  ID 194-A.2005 and 1100.A-0949 (The LEGA-C Public Spectroscopy Survey). This project
  has received funding from the European Research Council (ERC) under the European
  Union—Horizon 2020 research and innovation program (grant agreement No. 683184).
article_number: '117'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: David
  full_name: Sobral, David
  last_name: Sobral
- first_name: Arjen
  full_name: van der Wel, Arjen
  last_name: van der Wel
- first_name: Rachel
  full_name: Bezanson, Rachel
  last_name: Bezanson
- first_name: Eric
  full_name: Bell, Eric
  last_name: Bell
- first_name: Adam
  full_name: Muzzin, Adam
  last_name: Muzzin
- first_name: Francesco
  full_name: D’Eugenio, Francesco
  last_name: D’Eugenio
- first_name: Behnam
  full_name: Darvish, Behnam
  last_name: Darvish
- first_name: Anna
  full_name: Gallazzi, Anna
  last_name: Gallazzi
- first_name: Po-Feng
  full_name: Wu, Po-Feng
  last_name: Wu
- first_name: Michael
  full_name: Maseda, Michael
  last_name: Maseda
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Ana
  full_name: Paulino-Afonso, Ana
  last_name: Paulino-Afonso
- first_name: Caroline
  full_name: Straatman, Caroline
  last_name: Straatman
- first_name: Pieter G.
  full_name: van Dokkum, Pieter G.
  last_name: van Dokkum
citation:
  ama: 'Sobral D, van der Wel A, Bezanson R, et al. The LEGA-C of nature and nurture
    in stellar populations at z ∼ 0.6–1.0: Dn4000 and Hδ reveal different assembly
    histories for quiescent galaxies in different environments. <i>The Astrophysical
    Journal</i>. 2022;926(2). doi:<a href="https://doi.org/10.3847/1538-4357/ac4419">10.3847/1538-4357/ac4419</a>'
  apa: 'Sobral, D., van der Wel, A., Bezanson, R., Bell, E., Muzzin, A., D’Eugenio,
    F., … van Dokkum, P. G. (2022). The LEGA-C of nature and nurture in stellar populations
    at z ∼ 0.6–1.0: Dn4000 and Hδ reveal different assembly histories for quiescent
    galaxies in different environments. <i>The Astrophysical Journal</i>. IOP Publishing.
    <a href="https://doi.org/10.3847/1538-4357/ac4419">https://doi.org/10.3847/1538-4357/ac4419</a>'
  chicago: 'Sobral, David, Arjen van der Wel, Rachel Bezanson, Eric Bell, Adam Muzzin,
    Francesco D’Eugenio, Behnam Darvish, et al. “The LEGA-C of Nature and Nurture
    in Stellar Populations at z ∼ 0.6–1.0: Dn4000 and Hδ Reveal Different Assembly
    Histories for Quiescent Galaxies in Different Environments.” <i>The Astrophysical
    Journal</i>. IOP Publishing, 2022. <a href="https://doi.org/10.3847/1538-4357/ac4419">https://doi.org/10.3847/1538-4357/ac4419</a>.'
  ieee: 'D. Sobral <i>et al.</i>, “The LEGA-C of nature and nurture in stellar populations
    at z ∼ 0.6–1.0: Dn4000 and Hδ reveal different assembly histories for quiescent
    galaxies in different environments,” <i>The Astrophysical Journal</i>, vol. 926,
    no. 2. IOP Publishing, 2022.'
  ista: 'Sobral D, van der Wel A, Bezanson R, Bell E, Muzzin A, D’Eugenio F, Darvish
    B, Gallazzi A, Wu P-F, Maseda M, Matthee JJ, Paulino-Afonso A, Straatman C, van
    Dokkum PG. 2022. The LEGA-C of nature and nurture in stellar populations at z
    ∼ 0.6–1.0: Dn4000 and Hδ reveal different assembly histories for quiescent galaxies
    in different environments. The Astrophysical Journal. 926(2), 117.'
  mla: 'Sobral, David, et al. “The LEGA-C of Nature and Nurture in Stellar Populations
    at z ∼ 0.6–1.0: Dn4000 and Hδ Reveal Different Assembly Histories for Quiescent
    Galaxies in Different Environments.” <i>The Astrophysical Journal</i>, vol. 926,
    no. 2, 117, IOP Publishing, 2022, doi:<a href="https://doi.org/10.3847/1538-4357/ac4419">10.3847/1538-4357/ac4419</a>.'
  short: D. Sobral, A. van der Wel, R. Bezanson, E. Bell, A. Muzzin, F. D’Eugenio,
    B. Darvish, A. Gallazzi, P.-F. Wu, M. Maseda, J.J. Matthee, A. Paulino-Afonso,
    C. Straatman, P.G. van Dokkum, The Astrophysical Journal 926 (2022).
date_created: 2022-07-06T12:38:42Z
date_published: 2022-02-17T00:00:00Z
date_updated: 2022-07-19T09:37:42Z
day: '17'
doi: 10.3847/1538-4357/ac4419
extern: '1'
external_id:
  arxiv:
  - '2112.08372'
intvolume: '       926'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2112.08372
month: '02'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The LEGA-C of nature and nurture in stellar populations at z ∼ 0.6–1.0: Dn4000
  and Hδ reveal different assembly histories for quiescent galaxies in different environments'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 926
year: '2022'
...
---
_id: '11511'
abstract:
- lang: eng
  text: The ratio of α-elements to iron in galaxies holds valuable information about
    the star formation history (SFH) since their enrichment occurs on different timescales.
    The fossil record of stars in galaxies has mostly been excavated for passive galaxies,
    since the light of star-forming galaxies is dominated by young stars, which have
    much weaker atmospheric absorption features. Here we use the largest reference
    cosmological simulation of the EAGLE project to investigate the origin of variations
    in stellar α-enhancement among star-forming galaxies at z = 0, and their impact
    on integrated spectra. The definition of α-enhancement in a composite stellar
    population is ambiguous. We elucidate two definitions—termed “mean” and “galactic”
    α-enhancement—in more detail. While a star-forming galaxy has a high “mean” α-enhancement
    when its stars formed rapidly, a galaxy with a large “galactic” α-enhancement
    generally had a delayed SFH. We find that absorption-line strengths of Mg and
    Fe correlate with variations in α-enhancement. These correlations are strongest
    for the “galactic” α-enhancement. However, we show that these are mostly caused
    by other effects that are cross-correlated with α-enhancement, such as variations
    in the light-weighted age. This severely complicates the retrieval of α-enhancements
    in star-forming galaxies. The ambiguity is not severe for passive galaxies, and
    we confirm that spectral variations in these galaxies are caused by measurable
    variations in α-enhancements. We suggest that this more complex coupling between
    α-enhancement and SFHs can guide the interpretation of new observations of star-forming
    galaxies.
acknowledgement: "We thank our anonymous referee for the constructive feedback. We
  extend our gratitude to Maarten Baes, Simon Lilly, Rafael Ottersberg, Gabriele Pezzulli,
  Alvio Renzini, and Andrea Weibel for insightful discussions. A.G. gratefully acknowledges
  financial support from the Fund for Scientific Research Flanders (FWO-Vlaanderen,
  project G.0G04.16N). This work used the DiRAC Data Centric system at Durham University,
  operated by the ICC on behalf of the STFC DiRAC HPC Facility (www.dirac.ac.uk).
  This equipment was funded by BIS National E-infrastructure capital grant ST/K00042X/1,
  STFC capital grant ST/H008519/1, and STFC DiRAC Operations grant ST/K003267/1 and
  Durham University. DiRAC is part of the National E-Infrastructure.\r\n\r\nWe have
  benefited from the data analysis tool Topcat (Taylor 2013) and the programming language
  Python, including the numpy (van der Walt et al. 2011), matplotlib (Hunter 2007),
  and scipy (Virtanen et al. 2020) packages."
article_number: '73'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Andrea
  full_name: Gebek, Andrea
  last_name: Gebek
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
citation:
  ama: Gebek A, Matthee JJ. On the variation in stellar α-enhancements of star-forming
    galaxies in the EAGLE simulation. <i>The Astrophysical Journal</i>. 2022;924(2).
    doi:<a href="https://doi.org/10.3847/1538-4357/ac350b">10.3847/1538-4357/ac350b</a>
  apa: Gebek, A., &#38; Matthee, J. J. (2022). On the variation in stellar α-enhancements
    of star-forming galaxies in the EAGLE simulation. <i>The Astrophysical Journal</i>.
    IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ac350b">https://doi.org/10.3847/1538-4357/ac350b</a>
  chicago: Gebek, Andrea, and Jorryt J Matthee. “On the Variation in Stellar α-Enhancements
    of Star-Forming Galaxies in the EAGLE Simulation.” <i>The Astrophysical Journal</i>.
    IOP Publishing, 2022. <a href="https://doi.org/10.3847/1538-4357/ac350b">https://doi.org/10.3847/1538-4357/ac350b</a>.
  ieee: A. Gebek and J. J. Matthee, “On the variation in stellar α-enhancements of
    star-forming galaxies in the EAGLE simulation,” <i>The Astrophysical Journal</i>,
    vol. 924, no. 2. IOP Publishing, 2022.
  ista: Gebek A, Matthee JJ. 2022. On the variation in stellar α-enhancements of star-forming
    galaxies in the EAGLE simulation. The Astrophysical Journal. 924(2), 73.
  mla: Gebek, Andrea, and Jorryt J. Matthee. “On the Variation in Stellar α-Enhancements
    of Star-Forming Galaxies in the EAGLE Simulation.” <i>The Astrophysical Journal</i>,
    vol. 924, no. 2, 73, IOP Publishing, 2022, doi:<a href="https://doi.org/10.3847/1538-4357/ac350b">10.3847/1538-4357/ac350b</a>.
  short: A. Gebek, J.J. Matthee, The Astrophysical Journal 924 (2022).
date_created: 2022-07-06T12:48:32Z
date_published: 2022-01-13T00:00:00Z
date_updated: 2022-07-19T09:38:03Z
day: '13'
doi: 10.3847/1538-4357/ac350b
extern: '1'
external_id:
  arxiv:
  - '2102.04561'
intvolume: '       924'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2102.04561
month: '01'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the variation in stellar α-enhancements of star-forming galaxies in the
  EAGLE simulation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 924
year: '2022'
...
---
_id: '11521'
abstract:
- lang: eng
  text: 'The cosmic ionizing emissivity from star-forming galaxies has long been anchored
    to UV luminosity functions. Here, we introduce an emissivity framework based on
    Lyα emitters (LAEs), which naturally hones in on the subset of galaxies responsible
    for the ionizing background due to the intimate connection between production
    and escape of Lyα and LyC photons. Using constraints on the escape fractions of
    bright LAEs (LLyα > 0.2L*) at z ≈ 2 obtained from resolved Lyα profiles, and arguing
    for their redshift-invariance, we show that: (i) quasars and LAEs together reproduce
    the relatively flat emissivity at z ≈ 2–6, which is non-trivial given the strong
    evolution in both the star formation density and quasar number density at these
    epochs and (ii) LAEs produce late and rapid reionization between z ≈ 6−9 under
    plausible assumptions. Within this framework, the >10 × rise in the UV population-averaged
    fesc between z ≈ 3–7 naturally arises due to the same phenomena that drive the
    growing LAE fraction with redshift. Generally, a LAE dominated emissivity yields
    a peak in the distribution of the ionizing budget with UV luminosity as reported
    in latest simulations. Using our adopted parameters (⁠fesc=50 per cent⁠, ξion
    = 1025.9 Hz erg−1 for half the bright LAEs), a highly ionizing minority of galaxies
    with MUV < −17 accounts for the entire ionizing budget from star-forming galaxies.
    Rapid flashes of LyC from such rare galaxies produce a ‘disco’ ionizing background.
    We conclude proposing tests to further develop our suggested Lyα-anchored formalism.'
acknowledgement: We thank an anonymous referee for an encouraging and constructive
  report that helped improving the quality of this work. We acknowledge illuminating
  conversations with Xiaohan Wu, Chris Cain, Anna-Christina Eilers, Simon Lilly and
  Ruari Mackenzie. RPN gratefully acknowledges an Ashford Fellowship granted by Harvard
  University. MG was supported by NASA through the NASA Hubble Fellowship grant HST-HF2-51409.
  PO acknowledges support from the Swiss National Science Foundation through the SNSF
  Professorship grant 190079. GP acknowledges support from the Netherlands Research
  School for Astronomy (NOVA). MH is fellow of the Knut and Alice Wallenberg Foundation.
  DE is supported by the US National Science Foundation (NSF) through Astronomy &
  Astrophysics grant AST-1909198. The Cosmic Dawn Center (DAWN) is funded by the Danish
  National Research Foundation under grant No. 140. RA acknowledges support from Fondecyt
  Regular Grant 1202007. ST is supported by the 2021 Research Fund 1.210134.01 of
  UNIST (Ulsan National Institute of Science & Technology). MLl acknowledges support
  from the ANID/Scholarship Program/Doctorado Nacional/2019-21191036. JC acknowledges
  support from the Spanish Ministry of Science and Innovation, project PID2019-107408GB-C43
  (ESTALLIDOS) and from Gobierno de Canarias through EU FEDER funding, project PID2020010050.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Rohan P.
  full_name: Naidu, Rohan P.
  last_name: Naidu
- first_name: Gabriele
  full_name: Pezzulli, Gabriele
  last_name: Pezzulli
- first_name: Max
  full_name: Gronke, Max
  last_name: Gronke
- first_name: David
  full_name: Sobral, David
  last_name: Sobral
- first_name: Pascal A.
  full_name: Oesch, Pascal A.
  last_name: Oesch
- first_name: Matthew
  full_name: Hayes, Matthew
  last_name: Hayes
- first_name: Dawn
  full_name: Erb, Dawn
  last_name: Erb
- first_name: Daniel
  full_name: Schaerer, Daniel
  last_name: Schaerer
- first_name: Ricardo
  full_name: Amorín, Ricardo
  last_name: Amorín
- first_name: Sandro
  full_name: Tacchella, Sandro
  last_name: Tacchella
- first_name: Ana Paulino-Afonso
  full_name: Ana Paulino-Afonso, Ana Paulino-Afonso
  last_name: Ana Paulino-Afonso
- first_name: Mario
  full_name: Llerena, Mario
  last_name: Llerena
- first_name: João
  full_name: Calhau, João
  last_name: Calhau
- first_name: Huub
  full_name: Röttgering, Huub
  last_name: Röttgering
citation:
  ama: 'Matthee JJ, Naidu RP, Pezzulli G, et al. (Re)Solving reionization with Lyα:
    How bright Lyα emitters account for the z ≈ 2 − 8 cosmic ionizing background.
    <i>Monthly Notices of the Royal Astronomical Society</i>. 2022;512(4):5960-5977.
    doi:<a href="https://doi.org/10.1093/mnras/stac801">10.1093/mnras/stac801</a>'
  apa: 'Matthee, J. J., Naidu, R. P., Pezzulli, G., Gronke, M., Sobral, D., Oesch,
    P. A., … Röttgering, H. (2022). (Re)Solving reionization with Lyα: How bright
    Lyα emitters account for the z ≈ 2 − 8 cosmic ionizing background. <i>Monthly
    Notices of the Royal Astronomical Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/stac801">https://doi.org/10.1093/mnras/stac801</a>'
  chicago: 'Matthee, Jorryt J, Rohan P. Naidu, Gabriele Pezzulli, Max Gronke, David
    Sobral, Pascal A. Oesch, Matthew Hayes, et al. “(Re)Solving Reionization with
    Lyα: How Bright Lyα Emitters Account for the z ≈ 2 − 8 Cosmic Ionizing Background.”
    <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press,
    2022. <a href="https://doi.org/10.1093/mnras/stac801">https://doi.org/10.1093/mnras/stac801</a>.'
  ieee: 'J. J. Matthee <i>et al.</i>, “(Re)Solving reionization with Lyα: How bright
    Lyα emitters account for the z ≈ 2 − 8 cosmic ionizing background,” <i>Monthly
    Notices of the Royal Astronomical Society</i>, vol. 512, no. 4. Oxford University
    Press, pp. 5960–5977, 2022.'
  ista: 'Matthee JJ, Naidu RP, Pezzulli G, Gronke M, Sobral D, Oesch PA, Hayes M,
    Erb D, Schaerer D, Amorín R, Tacchella S, Ana Paulino-Afonso AP-A, Llerena M,
    Calhau J, Röttgering H. 2022. (Re)Solving reionization with Lyα: How bright Lyα
    emitters account for the z ≈ 2 − 8 cosmic ionizing background. Monthly Notices
    of the Royal Astronomical Society. 512(4), 5960–5977.'
  mla: 'Matthee, Jorryt J., et al. “(Re)Solving Reionization with Lyα: How Bright
    Lyα Emitters Account for the z ≈ 2 − 8 Cosmic Ionizing Background.” <i>Monthly
    Notices of the Royal Astronomical Society</i>, vol. 512, no. 4, Oxford University
    Press, 2022, pp. 5960–77, doi:<a href="https://doi.org/10.1093/mnras/stac801">10.1093/mnras/stac801</a>.'
  short: J.J. Matthee, R.P. Naidu, G. Pezzulli, M. Gronke, D. Sobral, P.A. Oesch,
    M. Hayes, D. Erb, D. Schaerer, R. Amorín, S. Tacchella, A.P.-A. Ana Paulino-Afonso,
    M. Llerena, J. Calhau, H. Röttgering, Monthly Notices of the Royal Astronomical
    Society 512 (2022) 5960–5977.
date_created: 2022-07-07T09:21:30Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2022-08-18T10:42:47Z
day: '01'
doi: 10.1093/mnras/stac801
extern: '1'
external_id:
  arxiv:
  - '2110.11967'
intvolume: '       512'
issue: '4'
keyword:
- 'galaxies: high-redshift'
- intergalactic medium
- 'cosmology: observations'
- dark ages
- reionization
- first stars
- 'ultraviolet: galaxies'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2110.11967
month: '06'
oa: 1
oa_version: Preprint
page: 5960-5977
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: '(Re)Solving reionization with Lyα: How bright Lyα emitters account for the
  z ≈ 2 − 8 cosmic ionizing background'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 512
year: '2022'
...
---
_id: '11542'
article_processing_charge: No
author:
- first_name: Rouven
  full_name: Schulz, Rouven
  id: 4C5E7B96-F248-11E8-B48F-1D18A9856A87
  last_name: Schulz
  orcid: 0000-0001-5297-733X
citation:
  ama: Schulz R. Source Data (Chimeric GPCRs mimic distinct signaling pathways and
    modulate microglia responses). 2022. doi:<a href="https://doi.org/10.15479/AT:ISTA:11542">10.15479/AT:ISTA:11542</a>
  apa: Schulz, R. (2022). Source Data (Chimeric GPCRs mimic distinct signaling pathways
    and modulate microglia responses). Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/AT:ISTA:11542">https://doi.org/10.15479/AT:ISTA:11542</a>
  chicago: Schulz, Rouven. “Source Data (Chimeric GPCRs Mimic Distinct Signaling Pathways
    and Modulate Microglia Responses).” Institute of Science and Technology Austria,
    2022. <a href="https://doi.org/10.15479/AT:ISTA:11542">https://doi.org/10.15479/AT:ISTA:11542</a>.
  ieee: R. Schulz, “Source Data (Chimeric GPCRs mimic distinct signaling pathways
    and modulate microglia responses).” Institute of Science and Technology Austria,
    2022.
  ista: Schulz R. 2022. Source Data (Chimeric GPCRs mimic distinct signaling pathways
    and modulate microglia responses), Institute of Science and Technology Austria,
    <a href="https://doi.org/10.15479/AT:ISTA:11542">10.15479/AT:ISTA:11542</a>.
  mla: Schulz, Rouven. <i>Source Data (Chimeric GPCRs Mimic Distinct Signaling Pathways
    and Modulate Microglia Responses)</i>. Institute of Science and Technology Austria,
    2022, doi:<a href="https://doi.org/10.15479/AT:ISTA:11542">10.15479/AT:ISTA:11542</a>.
  short: R. Schulz, (2022).
contributor:
- contributor_type: contact_person
  first_name: Sandra
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
date_created: 2022-07-08T11:03:02Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2024-02-21T12:34:51Z
department:
- _id: GradSch
- _id: SaSi
doi: 10.15479/AT:ISTA:11542
file:
- access_level: open_access
  checksum: 71e8186583f3adbb6c69a88ac9e6e49b
  content_type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
  creator: rschulz
  date_created: 2022-07-08T10:56:52Z
  date_updated: 2022-07-08T10:56:52Z
  file_id: '11543'
  file_name: Source Data.xlsx
  file_size: 135784571
  relation: main_file
  success: 1
file_date_updated: 2022-07-08T10:56:52Z
has_accepted_license: '1'
oa: 1
oa_version: None
publisher: Institute of Science and Technology Austria
related_material:
  link:
  - relation: contains
    url: https://www.biorxiv.org/content/10.1101/2021.06.21.449162v1
  record:
  - id: '11995'
    relation: used_in_publication
    status: public
status: public
title: Source Data (Chimeric GPCRs mimic distinct signaling pathways and modulate
  microglia responses)
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '11545'
abstract:
- lang: eng
  text: "We classify contravariant pairings between standard Whittaker modules and
    Verma modules over a complex semisimple Lie algebra. These contravariant pairings
    are useful in extending several classical techniques for category O to the Miličić–Soergel
    category N . We introduce a class of costandard modules which generalize dual
    Verma modules, and describe canonical maps from standard to costandard modules
    in terms of contravariant pairings.\r\nWe show that costandard modules have unique
    irreducible submodules and share the same composition factors as the corresponding
    standard Whittaker modules. We show that costandard modules give an algebraic
    characterization of the global sections of costandard twisted Harish-Chandra sheaves
    on the associated flag variety, which are defined using holonomic duality of D-modules.
    We prove that with these costandard modules, blocks of category\r\nN have the
    structure of highest weight categories and we establish a BGG reciprocity theorem
    for N ."
acknowledgement: We thank Catharina Stroppel and Jens Niklas Eberhardt for interesting
  discussions. The first author acknowledges the support of the European Union's Horizon
  2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement
  No. 754411. The second author is supported by the National Science Foundation Award
  No. 1803059 and the Australian Research Council grant DP170101579.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Adam
  full_name: Brown, Adam
  id: 70B7FDF6-608D-11E9-9333-8535E6697425
  last_name: Brown
- first_name: Anna
  full_name: Romanov, Anna
  last_name: Romanov
citation:
  ama: Brown A, Romanov A. Contravariant pairings between standard Whittaker modules
    and Verma modules. <i>Journal of Algebra</i>. 2022;609(11):145-179. doi:<a href="https://doi.org/10.1016/j.jalgebra.2022.06.017">10.1016/j.jalgebra.2022.06.017</a>
  apa: Brown, A., &#38; Romanov, A. (2022). Contravariant pairings between standard
    Whittaker modules and Verma modules. <i>Journal of Algebra</i>. Elsevier. <a href="https://doi.org/10.1016/j.jalgebra.2022.06.017">https://doi.org/10.1016/j.jalgebra.2022.06.017</a>
  chicago: Brown, Adam, and Anna Romanov. “Contravariant Pairings between Standard
    Whittaker Modules and Verma Modules.” <i>Journal of Algebra</i>. Elsevier, 2022.
    <a href="https://doi.org/10.1016/j.jalgebra.2022.06.017">https://doi.org/10.1016/j.jalgebra.2022.06.017</a>.
  ieee: A. Brown and A. Romanov, “Contravariant pairings between standard Whittaker
    modules and Verma modules,” <i>Journal of Algebra</i>, vol. 609, no. 11. Elsevier,
    pp. 145–179, 2022.
  ista: Brown A, Romanov A. 2022. Contravariant pairings between standard Whittaker
    modules and Verma modules. Journal of Algebra. 609(11), 145–179.
  mla: Brown, Adam, and Anna Romanov. “Contravariant Pairings between Standard Whittaker
    Modules and Verma Modules.” <i>Journal of Algebra</i>, vol. 609, no. 11, Elsevier,
    2022, pp. 145–79, doi:<a href="https://doi.org/10.1016/j.jalgebra.2022.06.017">10.1016/j.jalgebra.2022.06.017</a>.
  short: A. Brown, A. Romanov, Journal of Algebra 609 (2022) 145–179.
date_created: 2022-07-08T11:40:07Z
date_published: 2022-11-01T00:00:00Z
date_updated: 2023-08-03T11:56:30Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1016/j.jalgebra.2022.06.017
ec_funded: 1
external_id:
  isi:
  - '000861841100004'
file:
- access_level: open_access
  checksum: 82abaee3d7837f703e499a9ecbb25b7c
  content_type: application/pdf
  creator: dernst
  date_created: 2023-02-02T07:32:48Z
  date_updated: 2023-02-02T07:32:48Z
  file_id: '12473'
  file_name: 2022_JournalAlgebra_Brown.pdf
  file_size: 582962
  relation: main_file
  success: 1
file_date_updated: 2023-02-02T07:32:48Z
has_accepted_license: '1'
intvolume: '       609'
isi: 1
issue: '11'
keyword:
- Algebra and Number Theory
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 145-179
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Journal of Algebra
publication_identifier:
  issn:
  - 0021-8693
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Contravariant pairings between standard Whittaker modules and Verma modules
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 609
year: '2022'
...
---
_id: '11546'
abstract:
- lang: eng
  text: Local adaptation leads to differences between populations within a species.
    In many systems, similar environmental contrasts occur repeatedly, sometimes driving
    parallel phenotypic evolution. Understanding the genomic basis of local adaptation
    and parallel evolution is a major goal of evolutionary genomics. It is now known
    that by preventing the break-up of favourable combinations of alleles across multiple
    loci, genetic architectures that reduce recombination, like chromosomal inversions,
    can make an important contribution to local adaptation. However, little is known
    about whether inversions also contribute disproportionately to parallel evolution.
    Our aim here is to highlight this knowledge gap, to showcase existing studies,
    and to illustrate the differences between genomic architectures with and without
    inversions using simple models. We predict that by generating stronger effective
    selection, inversions can sometimes speed up the parallel adaptive process or
    enable parallel adaptation where it would be impossible otherwise, but this is
    highly dependent on the spatial setting. We highlight that further empirical work
    is needed, in particular to cover a broader taxonomic range and to understand
    the relative importance of inversions compared to genomic regions without inversions.
acknowledgement: We thank the editor and two anonymous reviewers for their helpful
  and interesting comments on this manuscript.
article_number: '20210203'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Anja M
  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: Rui
  full_name: Faria, Rui
  last_name: Faria
- first_name: Kerstin
  full_name: Johannesson, Kerstin
  last_name: Johannesson
- first_name: Roger
  full_name: Butlin, Roger
  last_name: Butlin
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: 'Westram AM, Faria R, Johannesson K, Butlin R, Barton NH. Inversions and parallel
    evolution. <i>Philosophical Transactions of the Royal Society B: Biological Sciences</i>.
    2022;377(1856). doi:<a href="https://doi.org/10.1098/rstb.2021.0203">10.1098/rstb.2021.0203</a>'
  apa: 'Westram, A. M., Faria, R., Johannesson, K., Butlin, R., &#38; Barton, N. H.
    (2022). Inversions and parallel evolution. <i>Philosophical Transactions of the
    Royal Society B: Biological Sciences</i>. Royal Society of London. <a href="https://doi.org/10.1098/rstb.2021.0203">https://doi.org/10.1098/rstb.2021.0203</a>'
  chicago: 'Westram, Anja M, Rui Faria, Kerstin Johannesson, Roger Butlin, and Nicholas
    H Barton. “Inversions and Parallel Evolution.” <i>Philosophical Transactions of
    the Royal Society B: Biological Sciences</i>. Royal Society of London, 2022. <a
    href="https://doi.org/10.1098/rstb.2021.0203">https://doi.org/10.1098/rstb.2021.0203</a>.'
  ieee: 'A. M. Westram, R. Faria, K. Johannesson, R. Butlin, and N. H. Barton, “Inversions
    and parallel evolution,” <i>Philosophical Transactions of the Royal Society B:
    Biological Sciences</i>, vol. 377, no. 1856. Royal Society of London, 2022.'
  ista: 'Westram AM, Faria R, Johannesson K, Butlin R, Barton NH. 2022. Inversions
    and parallel evolution. Philosophical Transactions of the Royal Society B: Biological
    Sciences. 377(1856), 20210203.'
  mla: 'Westram, Anja M., et al. “Inversions and Parallel Evolution.” <i>Philosophical
    Transactions of the Royal Society B: Biological Sciences</i>, vol. 377, no. 1856,
    20210203, Royal Society of London, 2022, doi:<a href="https://doi.org/10.1098/rstb.2021.0203">10.1098/rstb.2021.0203</a>.'
  short: 'A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical
    Transactions of the Royal Society B: Biological Sciences 377 (2022).'
date_created: 2022-07-08T11:41:56Z
date_published: 2022-08-01T00:00:00Z
date_updated: 2023-08-03T11:55:42Z
day: '01'
ddc:
- '570'
department:
- _id: BeVi
- _id: NiBa
doi: 10.1098/rstb.2021.0203
external_id:
  isi:
  - '000812317300005'
file:
- access_level: open_access
  checksum: 49f69428f3dcf5ce3ff281f7d199e9df
  content_type: application/pdf
  creator: dernst
  date_created: 2023-02-02T08:20:29Z
  date_updated: 2023-02-02T08:20:29Z
  file_id: '12479'
  file_name: 2022_PhilosophicalTransactionsB_Westram.pdf
  file_size: 920304
  relation: main_file
  success: 1
file_date_updated: 2023-02-02T08:20:29Z
has_accepted_license: '1'
intvolume: '       377'
isi: 1
issue: '1856'
keyword:
- General Agricultural and Biological Sciences
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 05959E1C-7A3F-11EA-A408-12923DDC885E
  grant_number: P32166
  name: The maintenance of alternative adaptive peaks in snapdragons
publication: 'Philosophical Transactions of the Royal Society B: Biological Sciences'
publication_identifier:
  eissn:
  - 1471-2970
  issn:
  - 0962-8436
publication_status: published
publisher: Royal Society of London
quality_controlled: '1'
scopus_import: '1'
status: public
title: Inversions and parallel evolution
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 377
year: '2022'
...
---
_id: '11551'
abstract:
- lang: eng
  text: Imbalanced mitochondrial dNTP pools are known players in the pathogenesis
    of multiple human diseases. Here we show that, even under physiological conditions,
    dGTP is largely overrepresented among other dNTPs in mitochondria of mouse tissues
    and human cultured cells. In addition, a vast majority of mitochondrial dGTP is
    tightly bound to NDUFA10, an accessory subunit of complex I of the mitochondrial
    respiratory chain. NDUFA10 shares a deoxyribonucleoside kinase (dNK) domain with
    deoxyribonucleoside kinases in the nucleotide salvage pathway, though no specific
    function beyond stabilizing the complex I holoenzyme has been described for this
    subunit. We mutated the dNK domain of NDUFA10 in human HEK-293T cells while preserving
    complex I assembly and activity. The NDUFA10E160A/R161A shows reduced dGTP binding
    capacity in vitro and leads to a 50% reduction in mitochondrial dGTP content,
    proving that most dGTP is directly bound to the dNK domain of NDUFA10. This interaction
    may represent a hitherto unknown mechanism regulating mitochondrial dNTP availability
    and linking oxidative metabolism to DNA maintenance.
acknowledgement: "We thank Dr, Luke Formosa (Department of Biochemistry and Molecular
  Biology, Monash Biomedicine Discovery Institute, Monash University, Melbourne, Australia)
  for his valuable advice and assistance on NDUFA10 molecular studies and Dr. Francesc
  Canals and his team (Proteomics Laboratory, Vall d’Hebron Institute of Oncology
  [VHIO], Universitat Autònoma de Barcelona, Barcelona, Spain) for their assistance
  with LC-MS/MS analyses. This work was supported by the Spanish Ministry of Industry,
  Economy and Competitiveness [grants BFU2014-52618-R, SAF2017-87506, and PID2020-112929RB-I00
  to Y.C.], by the Spanish Instituto de Salud Carlos III [grants PI21/00554 and PMP15/00025
  to R.M.], co-financed by the European Regional Development Fund (ERDF), and by an
  NHMRC Project grant to M.R. (GNT1164459).\r\n"
article_number: '620'
article_processing_charge: No
author:
- first_name: David
  full_name: Molina-Granada, David
  last_name: Molina-Granada
- first_name: Emiliano
  full_name: González-Vioque, Emiliano
  last_name: González-Vioque
- first_name: Marris G.
  full_name: Dibley, Marris G.
  last_name: Dibley
- first_name: Raquel
  full_name: Cabrera-Pérez, Raquel
  last_name: Cabrera-Pérez
- first_name: Antoni
  full_name: Vallbona-Garcia, Antoni
  last_name: Vallbona-Garcia
- first_name: Javier
  full_name: Torres-Torronteras, Javier
  last_name: Torres-Torronteras
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
- first_name: Michael T.
  full_name: Ryan, Michael T.
  last_name: Ryan
- first_name: Yolanda
  full_name: Cámara, Yolanda
  last_name: Cámara
- first_name: Ramon
  full_name: Martí, Ramon
  last_name: Martí
citation:
  ama: Molina-Granada D, González-Vioque E, Dibley MG, et al. Most mitochondrial dGTP
    is tightly bound to respiratory complex I through the NDUFA10 subunit. <i>Communications
    Biology</i>. 2022;5(1). doi:<a href="https://doi.org/10.1038/s42003-022-03568-6">10.1038/s42003-022-03568-6</a>
  apa: Molina-Granada, D., González-Vioque, E., Dibley, M. G., Cabrera-Pérez, R.,
    Vallbona-Garcia, A., Torres-Torronteras, J., … Martí, R. (2022). Most mitochondrial
    dGTP is tightly bound to respiratory complex I through the NDUFA10 subunit. <i>Communications
    Biology</i>. Springer Nature. <a href="https://doi.org/10.1038/s42003-022-03568-6">https://doi.org/10.1038/s42003-022-03568-6</a>
  chicago: Molina-Granada, David, Emiliano González-Vioque, Marris G. Dibley, Raquel
    Cabrera-Pérez, Antoni Vallbona-Garcia, Javier Torres-Torronteras, Leonid A Sazanov,
    Michael T. Ryan, Yolanda Cámara, and Ramon Martí. “Most Mitochondrial DGTP Is
    Tightly Bound to Respiratory Complex I through the NDUFA10 Subunit.” <i>Communications
    Biology</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/s42003-022-03568-6">https://doi.org/10.1038/s42003-022-03568-6</a>.
  ieee: D. Molina-Granada <i>et al.</i>, “Most mitochondrial dGTP is tightly bound
    to respiratory complex I through the NDUFA10 subunit,” <i>Communications Biology</i>,
    vol. 5, no. 1. Springer Nature, 2022.
  ista: Molina-Granada D, González-Vioque E, Dibley MG, Cabrera-Pérez R, Vallbona-Garcia
    A, Torres-Torronteras J, Sazanov LA, Ryan MT, Cámara Y, Martí R. 2022. Most mitochondrial
    dGTP is tightly bound to respiratory complex I through the NDUFA10 subunit. Communications
    Biology. 5(1), 620.
  mla: Molina-Granada, David, et al. “Most Mitochondrial DGTP Is Tightly Bound to
    Respiratory Complex I through the NDUFA10 Subunit.” <i>Communications Biology</i>,
    vol. 5, no. 1, 620, Springer Nature, 2022, doi:<a href="https://doi.org/10.1038/s42003-022-03568-6">10.1038/s42003-022-03568-6</a>.
  short: D. Molina-Granada, E. González-Vioque, M.G. Dibley, R. Cabrera-Pérez, A.
    Vallbona-Garcia, J. Torres-Torronteras, L.A. Sazanov, M.T. Ryan, Y. Cámara, R.
    Martí, Communications Biology 5 (2022).
date_created: 2022-07-10T22:01:52Z
date_published: 2022-06-23T00:00:00Z
date_updated: 2023-08-03T11:51:58Z
day: '23'
ddc:
- '570'
department:
- _id: LeSa
doi: 10.1038/s42003-022-03568-6
external_id:
  isi:
  - '000815098500002'
  pmid:
  - ' 35739187'
file:
- access_level: open_access
  checksum: 965f88bbcef3fd0c3e121340555c4467
  content_type: application/pdf
  creator: kschuh
  date_created: 2022-07-13T07:44:58Z
  date_updated: 2022-07-13T07:44:58Z
  file_id: '11571'
  file_name: 2022_communicationsbiology_Molina-Granada.pdf
  file_size: 2335369
  relation: main_file
  success: 1
file_date_updated: 2022-07-13T07:44:58Z
has_accepted_license: '1'
intvolume: '         5'
isi: 1
issue: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
publication: Communications Biology
publication_identifier:
  eissn:
  - '23993642'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Most mitochondrial dGTP is tightly bound to respiratory complex I through the
  NDUFA10 subunit
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 5
year: '2022'
...
---
_id: '11552'
abstract:
- lang: eng
  text: Rotational dynamics of D2 molecules inside helium nanodroplets is induced
    by a moderately intense femtosecond pump pulse and measured as a function of time
    by recording the yield of HeD+ ions, created through strong-field dissociative
    ionization with a delayed femtosecond probe pulse. The yield oscillates with a
    period of 185 fs, reflecting field-free rotational wave packet dynamics, and the
    oscillation persists for more than 500 periods. Within the experimental uncertainty,
    the rotational constant BHe of the in-droplet D2 molecule, determined by Fourier
    analysis, is the same as Bgas for an isolated D2 molecule. Our observations show
    that the D2 molecules inside helium nanodroplets essentially rotate as free D2
    molecules.
article_number: '243201'
article_processing_charge: No
arxiv: 1
author:
- first_name: Junjie
  full_name: Qiang, Junjie
  last_name: Qiang
- first_name: Lianrong
  full_name: Zhou, Lianrong
  last_name: Zhou
- first_name: Peifen
  full_name: Lu, Peifen
  last_name: Lu
- first_name: Kang
  full_name: Lin, Kang
  last_name: Lin
- first_name: Yongzhe
  full_name: Ma, Yongzhe
  last_name: Ma
- first_name: Shengzhe
  full_name: Pan, Shengzhe
  last_name: Pan
- first_name: Chenxu
  full_name: Lu, Chenxu
  last_name: Lu
- first_name: Wenyu
  full_name: Jiang, Wenyu
  last_name: Jiang
- first_name: Fenghao
  full_name: Sun, Fenghao
  last_name: Sun
- first_name: Wenbin
  full_name: Zhang, Wenbin
  last_name: Zhang
- first_name: Hui
  full_name: Li, Hui
  last_name: Li
- first_name: Xiaochun
  full_name: Gong, Xiaochun
  last_name: Gong
- first_name: Ilya Sh
  full_name: Averbukh, Ilya Sh
  last_name: Averbukh
- first_name: Yehiam
  full_name: Prior, Yehiam
  last_name: Prior
- first_name: Constant A.
  full_name: Schouder, Constant A.
  last_name: Schouder
- first_name: Henrik
  full_name: Stapelfeldt, Henrik
  last_name: Stapelfeldt
- first_name: Igor
  full_name: Cherepanov, Igor
  id: 339C7E5A-F248-11E8-B48F-1D18A9856A87
  last_name: Cherepanov
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Wolfgang
  full_name: Jäger, Wolfgang
  last_name: Jäger
- first_name: Jian
  full_name: Wu, Jian
  last_name: Wu
citation:
  ama: Qiang J, Zhou L, Lu P, et al. Femtosecond rotational dynamics of D2 molecules
    in superfluid helium nanodroplets. <i>Physical Review Letters</i>. 2022;128(24).
    doi:<a href="https://doi.org/10.1103/PhysRevLett.128.243201">10.1103/PhysRevLett.128.243201</a>
  apa: Qiang, J., Zhou, L., Lu, P., Lin, K., Ma, Y., Pan, S., … Wu, J. (2022). Femtosecond
    rotational dynamics of D2 molecules in superfluid helium nanodroplets. <i>Physical
    Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.128.243201">https://doi.org/10.1103/PhysRevLett.128.243201</a>
  chicago: Qiang, Junjie, Lianrong Zhou, Peifen Lu, Kang Lin, Yongzhe Ma, Shengzhe
    Pan, Chenxu Lu, et al. “Femtosecond Rotational Dynamics of D2 Molecules in Superfluid
    Helium Nanodroplets.” <i>Physical Review Letters</i>. American Physical Society,
    2022. <a href="https://doi.org/10.1103/PhysRevLett.128.243201">https://doi.org/10.1103/PhysRevLett.128.243201</a>.
  ieee: J. Qiang <i>et al.</i>, “Femtosecond rotational dynamics of D2 molecules in
    superfluid helium nanodroplets,” <i>Physical Review Letters</i>, vol. 128, no.
    24. American Physical Society, 2022.
  ista: Qiang J, Zhou L, Lu P, Lin K, Ma Y, Pan S, Lu C, Jiang W, Sun F, Zhang W,
    Li H, Gong X, Averbukh IS, Prior Y, Schouder CA, Stapelfeldt H, Cherepanov I,
    Lemeshko M, Jäger W, Wu J. 2022. Femtosecond rotational dynamics of D2 molecules
    in superfluid helium nanodroplets. Physical Review Letters. 128(24), 243201.
  mla: Qiang, Junjie, et al. “Femtosecond Rotational Dynamics of D2 Molecules in Superfluid
    Helium Nanodroplets.” <i>Physical Review Letters</i>, vol. 128, no. 24, 243201,
    American Physical Society, 2022, doi:<a href="https://doi.org/10.1103/PhysRevLett.128.243201">10.1103/PhysRevLett.128.243201</a>.
  short: J. Qiang, L. Zhou, P. Lu, K. Lin, Y. Ma, S. Pan, C. Lu, W. Jiang, F. Sun,
    W. Zhang, H. Li, X. Gong, I.S. Averbukh, Y. Prior, C.A. Schouder, H. Stapelfeldt,
    I. Cherepanov, M. Lemeshko, W. Jäger, J. Wu, Physical Review Letters 128 (2022).
date_created: 2022-07-10T22:01:52Z
date_published: 2022-06-16T00:00:00Z
date_updated: 2023-08-03T11:54:14Z
day: '16'
department:
- _id: MiLe
doi: 10.1103/PhysRevLett.128.243201
ec_funded: 1
external_id:
  arxiv:
  - '2201.09281'
  isi:
  - '000820659700002'
intvolume: '       128'
isi: 1
issue: '24'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2201.09281
month: '06'
oa: 1
oa_version: Submitted Version
project:
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '801770'
  name: 'Angulon: physics and applications of a new quasiparticle'
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: Physical Review Letters
publication_identifier:
  eissn:
  - '10797114'
  issn:
  - '00319007'
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Femtosecond rotational dynamics of D2 molecules in superfluid helium nanodroplets
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 128
year: '2022'
...
---
_id: '11553'
abstract:
- lang: eng
  text: "In holomorphic dynamics, complex box mappings arise as first return maps
    to wellchosen domains. They are a generalization of polynomial-like mapping, where
    the domain of the return map can have infinitely many components. They turned
    out to be extremely useful in tackling diverse problems. The purpose of this paper
    is:\r\n• To illustrate some pathologies that can occur when a complex box mapping
    is not induced by a globally defined map and when its domain has infinitely many
    components, and to give conditions to avoid these issues.\r\n• To show that once
    one has a box mapping for a rational map, these conditions can be assumed to hold
    in a very natural setting. Thus, we call such complex box mappings dynamically
    natural. Having such box mappings is the first step in tackling many problems
    in one-dimensional dynamics.\r\n• Many results in holomorphic dynamics rely on
    an interplay between combinatorial and analytic techniques. In this setting, some
    of these tools are:\r\n  • the Enhanced Nest (a nest of puzzle pieces around critical
    points) from Kozlovski, Shen, van Strien (AnnMath 165:749–841, 2007), referred
    to below as KSS;\r\n  • the Covering Lemma (which controls the moduli of pullbacks
    of annuli) from Kahn and Lyubich (Ann Math 169(2):561–593, 2009);\r\n   • the
    QC-Criterion and the Spreading Principle from KSS.\r\nThe purpose of this paper
    is to make these tools more accessible so that they can be used as a ‘black box’,
    so one does not have to redo the proofs in new settings.\r\n• To give an intuitive,
    but also rather detailed, outline of the proof from KSS and Kozlovski and van
    Strien (Proc Lond Math Soc (3) 99:275–296, 2009) of the following results for
    non-renormalizable dynamically natural complex box mappings:\r\n   • puzzle pieces
    shrink to points,\r\n   • (under some assumptions) topologically conjugate non-renormalizable
    polynomials and box mappings are quasiconformally conjugate.\r\n• We prove the
    fundamental ergodic properties for dynamically natural box mappings. This leads
    to some necessary conditions for when such a box mapping supports a measurable
    invariant line field on its filled Julia set. These mappings\r\nare the analogues
    of Lattès maps in this setting.\r\n• We prove a version of Mañé’s Theorem for
    complex box mappings concerning expansion along orbits of points that avoid a
    neighborhood of the set of critical points."
acknowledgement: We would also like to thank Dzmitry Dudko and Dierk Schleicher for
  many stimulating discussions and encouragement during our work on this project,
  and Weixiao Shen, Mikhail Hlushchanka and the referee for helpful comments. We are
  grateful to Leon Staresinic who carefully read the revised version of the manuscript
  and provided many helpful suggestions.
article_processing_charge: No
article_type: original
author:
- first_name: Trevor
  full_name: Clark, Trevor
  last_name: Clark
- first_name: Kostiantyn
  full_name: Drach, Kostiantyn
  id: fe8209e2-906f-11eb-847d-950f8fc09115
  last_name: Drach
  orcid: 0000-0002-9156-8616
- first_name: Oleg
  full_name: Kozlovski, Oleg
  last_name: Kozlovski
- first_name: Sebastian Van
  full_name: Strien, Sebastian Van
  last_name: Strien
citation:
  ama: Clark T, Drach K, Kozlovski O, Strien SV. The dynamics of complex box mappings.
    <i>Arnold Mathematical Journal</i>. 2022;8(2):319-410. doi:<a href="https://doi.org/10.1007/s40598-022-00200-7">10.1007/s40598-022-00200-7</a>
  apa: Clark, T., Drach, K., Kozlovski, O., &#38; Strien, S. V. (2022). The dynamics
    of complex box mappings. <i>Arnold Mathematical Journal</i>. Springer Nature.
    <a href="https://doi.org/10.1007/s40598-022-00200-7">https://doi.org/10.1007/s40598-022-00200-7</a>
  chicago: Clark, Trevor, Kostiantyn Drach, Oleg Kozlovski, and Sebastian Van Strien.
    “The Dynamics of Complex Box Mappings.” <i>Arnold Mathematical Journal</i>. Springer
    Nature, 2022. <a href="https://doi.org/10.1007/s40598-022-00200-7">https://doi.org/10.1007/s40598-022-00200-7</a>.
  ieee: T. Clark, K. Drach, O. Kozlovski, and S. V. Strien, “The dynamics of complex
    box mappings,” <i>Arnold Mathematical Journal</i>, vol. 8, no. 2. Springer Nature,
    pp. 319–410, 2022.
  ista: Clark T, Drach K, Kozlovski O, Strien SV. 2022. The dynamics of complex box
    mappings. Arnold Mathematical Journal. 8(2), 319–410.
  mla: Clark, Trevor, et al. “The Dynamics of Complex Box Mappings.” <i>Arnold Mathematical
    Journal</i>, vol. 8, no. 2, Springer Nature, 2022, pp. 319–410, doi:<a href="https://doi.org/10.1007/s40598-022-00200-7">10.1007/s40598-022-00200-7</a>.
  short: T. Clark, K. Drach, O. Kozlovski, S.V. Strien, Arnold Mathematical Journal
    8 (2022) 319–410.
date_created: 2022-07-10T22:01:53Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2023-02-16T10:02:12Z
day: '01'
ddc:
- '500'
department:
- _id: VaKa
doi: 10.1007/s40598-022-00200-7
ec_funded: 1
file:
- access_level: open_access
  checksum: 16e7c659dee9073c6c8aeb87316ef201
  content_type: application/pdf
  creator: kschuh
  date_created: 2022-07-12T10:04:55Z
  date_updated: 2022-07-12T10:04:55Z
  file_id: '11559'
  file_name: 2022_ArnoldMathematicalJournal_Clark.pdf
  file_size: 2509915
  relation: main_file
  success: 1
file_date_updated: 2022-07-12T10:04:55Z
has_accepted_license: '1'
intvolume: '         8'
issue: '2'
language:
- iso: eng
month: '06'
oa: 1
oa_version: None
page: 319-410
project:
- _id: 9B8B92DE-BA93-11EA-9121-9846C619BF3A
  call_identifier: H2020
  grant_number: '885707'
  name: Spectral rigidity and integrability for billiards and geodesic flows
publication: Arnold Mathematical Journal
publication_identifier:
  eissn:
  - 2199-6806
  issn:
  - 2199-6792
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1007/s40598-022-00209-y
  - relation: erratum
    url: https://doi.org/10.1007/s40598-022-00218-x
scopus_import: '1'
status: public
title: The dynamics of complex box mappings
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2022'
...
---
_id: '11556'
abstract:
- lang: eng
  text: "We revisit two basic Direct Simulation Monte Carlo Methods to model aggregation
    kinetics and extend them for aggregation processes with collisional fragmentation
    (shattering). We test the performance and accuracy of the extended methods and
    compare their performance with efficient deterministic finite-difference method
    applied to the same model. We validate the stochastic methods on the test problems
    and apply them to verify the existence of oscillating regimes in the aggregation-fragmentation
    kinetics recently detected in deterministic simulations. We confirm the emergence
    of steady oscillations of densities in such systems and prove the stability of
    the\r\noscillations with respect to fluctuations and noise."
acknowledgement: Zhores supercomputer of Skolkovo Institute of Science and Technology
  [68] has been used in the present research. S.A.M. was supported by Moscow Center
  for Fundamental and Applied Mathematics (the agreement with the Ministry of Education
  and Science of the Russian Federation No. 075-15-2019-1624). A.I.O. acknowledges
  RFBR project No. 20-31-90022. N.V.B. acknowledges the support of the Analytical
  Center (subsidy agreement 000000D730321P5Q0002, Grant No. 70-2021-00145 02.11.2021).
article_number: '111439'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Aleksei
  full_name: Kalinov, Aleksei
  id: 44b7120e-eb97-11eb-a6c2-e1557aa81d02
  last_name: Kalinov
  orcid: 0000-0003-2189-3904
- first_name: A.I.
  full_name: Osinskiy, A.I.
  last_name: Osinskiy
- first_name: S.A.
  full_name: Matveev, S.A.
  last_name: Matveev
- first_name: W.
  full_name: Otieno, W.
  last_name: Otieno
- first_name: N.V.
  full_name: Brilliantov, N.V.
  last_name: Brilliantov
citation:
  ama: Kalinov A, Osinskiy AI, Matveev SA, Otieno W, Brilliantov NV. Direct simulation
    Monte Carlo for new regimes in aggregation-fragmentation kinetics. <i>Journal
    of Computational Physics</i>. 2022;467. doi:<a href="https://doi.org/10.1016/j.jcp.2022.111439">10.1016/j.jcp.2022.111439</a>
  apa: Kalinov, A., Osinskiy, A. I., Matveev, S. A., Otieno, W., &#38; Brilliantov,
    N. V. (2022). Direct simulation Monte Carlo for new regimes in aggregation-fragmentation
    kinetics. <i>Journal of Computational Physics</i>. Elsevier. <a href="https://doi.org/10.1016/j.jcp.2022.111439">https://doi.org/10.1016/j.jcp.2022.111439</a>
  chicago: Kalinov, Aleksei, A.I. Osinskiy, S.A. Matveev, W. Otieno, and N.V. Brilliantov.
    “Direct Simulation Monte Carlo for New Regimes in Aggregation-Fragmentation Kinetics.”
    <i>Journal of Computational Physics</i>. Elsevier, 2022. <a href="https://doi.org/10.1016/j.jcp.2022.111439">https://doi.org/10.1016/j.jcp.2022.111439</a>.
  ieee: A. Kalinov, A. I. Osinskiy, S. A. Matveev, W. Otieno, and N. V. Brilliantov,
    “Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics,”
    <i>Journal of Computational Physics</i>, vol. 467. Elsevier, 2022.
  ista: Kalinov A, Osinskiy AI, Matveev SA, Otieno W, Brilliantov NV. 2022. Direct
    simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics.
    Journal of Computational Physics. 467, 111439.
  mla: Kalinov, Aleksei, et al. “Direct Simulation Monte Carlo for New Regimes in
    Aggregation-Fragmentation Kinetics.” <i>Journal of Computational Physics</i>,
    vol. 467, 111439, Elsevier, 2022, doi:<a href="https://doi.org/10.1016/j.jcp.2022.111439">10.1016/j.jcp.2022.111439</a>.
  short: A. Kalinov, A.I. Osinskiy, S.A. Matveev, W. Otieno, N.V. Brilliantov, Journal
    of Computational Physics 467 (2022).
date_created: 2022-07-11T12:19:59Z
date_published: 2022-10-15T00:00:00Z
date_updated: 2023-08-03T11:55:06Z
day: '15'
ddc:
- '518'
department:
- _id: GradSch
- _id: ChWo
doi: 10.1016/j.jcp.2022.111439
external_id:
  arxiv:
  - '2103.09481'
  isi:
  - '000917225500013'
intvolume: '       467'
isi: 1
keyword:
- Computer Science Applications
- Physics and Astronomy (miscellaneous)
- Applied Mathematics
- Computational Mathematics
- Modeling and Simulation
- Numerical Analysis
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2103.09481
month: '10'
oa: 1
oa_version: Preprint
publication: Journal of Computational Physics
publication_identifier:
  issn:
  - 0021-9991
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Direct simulation Monte Carlo for new regimes in aggregation-fragmentation
  kinetics
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 467
year: '2022'
...
