---
_id: '3447'
author:
- first_name: Krishnendu
  full_name: Krishnendu Chatterjee
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Pallab
  full_name: Dasgupta, Pallab
  last_name: Dasgupta
- first_name: Partha
  full_name: Chakrabarti, Partha P
  last_name: Chakrabarti
citation:
  ama: 'Chatterjee K, Dasgupta P, Chakrabarti P. Weighted quantified computation tree
    logic. In: Elsevier; 2001.'
  apa: 'Chatterjee, K., Dasgupta, P., &#38; Chakrabarti, P. (2001). Weighted quantified
    computation tree logic. Presented at the CIT: Conference on Information Technology,
    Elsevier.'
  chicago: Chatterjee, Krishnendu, Pallab Dasgupta, and Partha Chakrabarti. “Weighted
    Quantified Computation Tree Logic.” Elsevier, 2001.
  ieee: 'K. Chatterjee, P. Dasgupta, and P. Chakrabarti, “Weighted quantified computation
    tree logic,” presented at the CIT: Conference on Information Technology, 2001.'
  ista: 'Chatterjee K, Dasgupta P, Chakrabarti P. 2001. Weighted quantified computation
    tree logic. CIT: Conference on Information Technology.'
  mla: Chatterjee, Krishnendu, et al. <i>Weighted Quantified Computation Tree Logic</i>.
    Elsevier, 2001.
  short: K. Chatterjee, P. Dasgupta, P. Chakrabarti, in:, Elsevier, 2001.
conference:
  name: 'CIT: Conference on Information Technology'
date_created: 2018-12-11T12:03:23Z
date_published: 2001-11-14T00:00:00Z
date_updated: 2021-01-12T07:43:31Z
day: '14'
extern: 1
month: '11'
publication_status: published
publisher: Elsevier
publist_id: '2940'
quality_controlled: 0
status: public
title: Weighted quantified computation tree logic
type: conference
year: '2001'
...
---
_id: '3493'
abstract:
- lang: eng
  text: Although agonists and competitive antagonists presumably occupy overlapping
    binding sites on ligand-gated channels, these interactions cannot be identical
    because agonists cause channel opening whereas antagonists do not. One explanation
    is that only agonist binding performs enough work on the receptor to cause the
    conformational changes that lead to gating. This idea is supported by agonist
    binding rates at GABAA and nicotinic acetylcholine receptors that are slower than
    expected for a diffusion-limited process, suggesting that agonist binding involves
    an energy-requiring event. This hypothesis predicts that competitive antagonist
    binding should require less activation energy than agonist binding. To test this
    idea, we developed a novel deconvolution-based method to compare binding and unbinding
    kinetics of GABAA receptor agonists and antagonists in outside-out patches from
    rat hippocampal neurons. Agonist and antagonist unbinding rates were steeply correlated
    with affinity. Unlike the agonists, three of the four antagonists tested had binding
    rates that were fast, independent of affinity, and could be accounted for by diffusion-
    and dehydration-limited processes. In contrast, agonist binding involved additional
    energy-requiring steps, consistent with the idea that channel gating is initiated
    by agonist-triggered movements within the ligand binding site. Antagonist binding
    does not appear to produce such movements, and may in fact prevent them.
article_processing_charge: No
article_type: original
author:
- first_name: M.V
  full_name: Jones, M.V
  last_name: Jones
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Y.
  full_name: Sahara, Y.
  last_name: Sahara
- first_name: G.
  full_name: Westbrook, G.
  last_name: Westbrook
citation:
  ama: Jones M., Jonas PM, Sahara Y, Westbrook G. Microscopic kinetics and energetics
    distinguish GABAA receptor agonists from antagonists. <i>Biophysical Journal</i>.
    2001;81(5):2660-2670. doi:<a href="https://doi.org/10.1016/S0006-3495(01)75909-7
    ">10.1016/S0006-3495(01)75909-7 </a>
  apa: Jones, M. ., Jonas, P. M., Sahara, Y., &#38; Westbrook, G. (2001). Microscopic
    kinetics and energetics distinguish GABAA receptor agonists from antagonists.
    <i>Biophysical Journal</i>. Biophysical Society. <a href="https://doi.org/10.1016/S0006-3495(01)75909-7
    ">https://doi.org/10.1016/S0006-3495(01)75909-7 </a>
  chicago: Jones, M.V, Peter M Jonas, Y. Sahara, and G. Westbrook. “Microscopic Kinetics
    and Energetics Distinguish GABAA Receptor Agonists from Antagonists.” <i>Biophysical
    Journal</i>. Biophysical Society, 2001. <a href="https://doi.org/10.1016/S0006-3495(01)75909-7
    ">https://doi.org/10.1016/S0006-3495(01)75909-7 </a>.
  ieee: M. . Jones, P. M. Jonas, Y. Sahara, and G. Westbrook, “Microscopic kinetics
    and energetics distinguish GABAA receptor agonists from antagonists,” <i>Biophysical
    Journal</i>, vol. 81, no. 5. Biophysical Society, pp. 2660–2670, 2001.
  ista: Jones M., Jonas PM, Sahara Y, Westbrook G. 2001. Microscopic kinetics and
    energetics distinguish GABAA receptor agonists from antagonists. Biophysical Journal.
    81(5), 2660–2670.
  mla: Jones, M. .., et al. “Microscopic Kinetics and Energetics Distinguish GABAA
    Receptor Agonists from Antagonists.” <i>Biophysical Journal</i>, vol. 81, no.
    5, Biophysical Society, 2001, pp. 2660–70, doi:<a href="https://doi.org/10.1016/S0006-3495(01)75909-7
    ">10.1016/S0006-3495(01)75909-7 </a>.
  short: M.. Jones, P.M. Jonas, Y. Sahara, G. Westbrook, Biophysical Journal 81 (2001)
    2660–2670.
date_created: 2018-12-11T12:03:37Z
date_published: 2001-11-01T00:00:00Z
date_updated: 2023-05-15T13:50:21Z
day: '01'
doi: '10.1016/S0006-3495(01)75909-7 '
extern: '1'
external_id:
  pmid:
  - '11606279'
intvolume: '        81'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1301733/
month: '11'
oa: 1
oa_version: Published Version
page: 2660 - 2670
pmid: 1
publication: Biophysical Journal
publication_identifier:
  issn:
  - 0006-3495
publication_status: published
publisher: Biophysical Society
publist_id: '2894'
quality_controlled: '1'
status: public
title: Microscopic kinetics and energetics distinguish GABAA receptor agonists from
  antagonists
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 81
year: '2001'
...
---
_id: '3494'
abstract:
- lang: eng
  text: 'Mutual synaptic interactions between GABAergic interneurons are thought to
    be of critical importance for the generation of network oscillations and for temporal
    encoding of information in the hippocampus. However, the functional properties
    of synaptic transmission between hippocampal interneurons are largely unknown.
    We have made paired recordings from basket cells (BCs) in the dentate gyrus of
    rat hippocampal slices, followed by correlated light and electron microscopical
    analysis. Unitary GABAAreceptor-mediated IPSCs at BC–BC synapses recorded at the
    soma showed a fast rise and decay, with a mean decay time constant of 2.5 ± 0.2
    msec (32°C). Synaptic transmission at BC–BC synapses showed paired-pulse depression
    (PPD) (32 ± 5% for 10 msec interpulse intervals) and multiple-pulse depression
    during repetitive stimulation. Detailed passive cable model simulations based
    on somatodendritic morphology and localization of synaptic contacts further indicated
    that the conductance change at the postsynaptic site was even faster, decaying
    with a mean time constant of 1.8 ± 0.6 msec. Sequential triple recordings revealed
    that the decay time course of IPSCs at BC–BC synapses was approximately twofold
    faster than that at BC–granule cell synapses, whereas the extent of PPD was comparable.
    To examine the consequences of the fast postsynaptic conductance change for the
    generation of oscillatory activity, we developed a computational model of an interneuron
    network. The model showed robust oscillations at frequencies &gt;60 Hz if the
    excitatory drive was sufficiently large. Thus the fast conductance change at interneuron–interneuron
    synapses may promote the generation of high-frequency oscillations observed in
    the dentate gyrusin vivo. '
acknowledgement: This work was supported by grants of the Deutsche Forschungsgemeinschaft
  (SFB 505/C6) and the Human Frontiers Science Program Organization (RG0017/1998-B).
  We thank Drs. M. V. Jones, J. Bischofberger, and U. Kraushaar for critically reading
  this manuscript. We also thank B. Taskin and A. Roth for advice in the use of reconstruction
  and modeling software, and S. Nestel, M. Winter, and A. Blomenkamp for technical
  assistance.
article_processing_charge: No
article_type: original
author:
- first_name: Marlene
  full_name: Bartos, Marlene
  last_name: Bartos
- first_name: Imre
  full_name: Vida, Imre
  last_name: Vida
- first_name: Michael
  full_name: Frotscher, Michael
  last_name: Frotscher
- first_name: Jörg
  full_name: Geiger, Jörg
  last_name: Geiger
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Bartos M, Vida I, Frotscher M, Geiger J, Jonas PM. Rapid signaling at inhibitory
    synapses in a dentate gyrus interneuron network. <i>Journal of Neuroscience</i>.
    2001;21(8):2687-2698. doi:<a href="https://doi.org/10.1523/JNEUROSCI.21-08-02687.2001">10.1523/JNEUROSCI.21-08-02687.2001</a>
  apa: Bartos, M., Vida, I., Frotscher, M., Geiger, J., &#38; Jonas, P. M. (2001).
    Rapid signaling at inhibitory synapses in a dentate gyrus interneuron network.
    <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href="https://doi.org/10.1523/JNEUROSCI.21-08-02687.2001">https://doi.org/10.1523/JNEUROSCI.21-08-02687.2001</a>
  chicago: Bartos, Marlene, Imre Vida, Michael Frotscher, Jörg Geiger, and Peter M
    Jonas. “Rapid Signaling at Inhibitory Synapses in a Dentate Gyrus Interneuron
    Network.” <i>Journal of Neuroscience</i>. Society for Neuroscience, 2001. <a href="https://doi.org/10.1523/JNEUROSCI.21-08-02687.2001">https://doi.org/10.1523/JNEUROSCI.21-08-02687.2001</a>.
  ieee: M. Bartos, I. Vida, M. Frotscher, J. Geiger, and P. M. Jonas, “Rapid signaling
    at inhibitory synapses in a dentate gyrus interneuron network.,” <i>Journal of
    Neuroscience</i>, vol. 21, no. 8. Society for Neuroscience, pp. 2687–2698, 2001.
  ista: Bartos M, Vida I, Frotscher M, Geiger J, Jonas PM. 2001. Rapid signaling at
    inhibitory synapses in a dentate gyrus interneuron network. Journal of Neuroscience.
    21(8), 2687–2698.
  mla: Bartos, Marlene, et al. “Rapid Signaling at Inhibitory Synapses in a Dentate
    Gyrus Interneuron Network.” <i>Journal of Neuroscience</i>, vol. 21, no. 8, Society
    for Neuroscience, 2001, pp. 2687–98, doi:<a href="https://doi.org/10.1523/JNEUROSCI.21-08-02687.2001">10.1523/JNEUROSCI.21-08-02687.2001</a>.
  short: M. Bartos, I. Vida, M. Frotscher, J. Geiger, P.M. Jonas, Journal of Neuroscience
    21 (2001) 2687–2698.
date_created: 2018-12-11T12:03:37Z
date_published: 2001-04-15T00:00:00Z
date_updated: 2023-05-15T13:47:04Z
day: '15'
doi: 10.1523/JNEUROSCI.21-08-02687.2001
extern: '1'
external_id:
  pmid:
  - '11306622'
intvolume: '        21'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ncbi.nlm.nih.gov/pmc/articles/PMC6762544/
month: '04'
oa: 1
oa_version: Published Version
page: 2687 - 2698
pmid: 1
publication: Journal of Neuroscience
publication_identifier:
  issn:
  - 0270-6474
publication_status: published
publisher: Society for Neuroscience
publist_id: '2893'
quality_controlled: '1'
status: public
title: Rapid signaling at inhibitory synapses in a dentate gyrus interneuron network.
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 21
year: '2001'
...
---
_id: '3495'
abstract:
- lang: eng
  text: High Ca2+ permeability and its control by voltage-dependent Mg2+ block are
    defining features of NMDA receptors. These features are lost if the principal
    NR1 subunit carries an asparagine (N) to arginine (R) substitution in a critical
    channel site at NR1 position 598. NR1(R) expression from a single allele in gene-targeted
    NR1+/R mice is lethal soon after birth, precluding analysis of altered synaptic
    functions later in life. We therefore employed the forebrain specific αCaMKII
    promoter to drive tTA-mediated tetracyclin sensitive transcription of transgenes
    for NR1(R) and for lacZ as reporter. Transgene expression was observed in cortex,
    striatum, hippocampus, amygdala and olfactory bulb and was mosaic in all these
    forebrain regions. It was highest in olfactory bulb granule cells, in most of
    which Ca2+ permeability and voltage-dependent Mg2+ block of NMDA receptors were
    reduced to different extents. This indicates significant impairment of NMDA receptor
    function by NR1(R) in presence of the wild-type NR1 complement. Indeed, even though
    NR1(R) mRNA constituted only 18% of the entire NR1 mRNA population in forebrain,
    the transgenic mice died during adolescence unless transgene expression was suppressed
    by doxycycline. Thus, glutamate receptor function can be altered in the mouse
    by regulated NR1(R) transgene expression.
acknowledgement: 'This work was supported in part by grants from the 358 (1992) 36–41.Deutsche
  Forschungsgemeinschaft (Bi 642 / 1-2) and the Volkswagen foundation. '
article_processing_charge: No
article_type: original
author:
- first_name: Jasna
  full_name: Jerecic, Jasna
  last_name: Jerecic
- first_name: Christian
  full_name: Schulze, Christian
  last_name: Schulze
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Rolf
  full_name: Sprengel, Rolf
  last_name: Sprengel
- first_name: Peter
  full_name: Seeburg, Peter
  last_name: Seeburg
- first_name: Joseph
  full_name: Bischofberger, Joseph
  last_name: Bischofberger
citation:
  ama: Jerecic J, Schulze C, Jonas PM, Sprengel R, Seeburg P, Bischofberger J. Impaired
    NMDA receptor function in mouse olfactory bulb neurons by tetracycline-sensitive
    NR1 (N598R) expression. <i>Molecular Brain Research</i>. 2001;94(1-2):96-104.
    doi:<a href="https://doi.org/10.1016/S0169-328X(01)00221-2">10.1016/S0169-328X(01)00221-2</a>
  apa: Jerecic, J., Schulze, C., Jonas, P. M., Sprengel, R., Seeburg, P., &#38; Bischofberger,
    J. (2001). Impaired NMDA receptor function in mouse olfactory bulb neurons by
    tetracycline-sensitive NR1 (N598R) expression. <i>Molecular Brain Research</i>.
    Elsevier. <a href="https://doi.org/10.1016/S0169-328X(01)00221-2">https://doi.org/10.1016/S0169-328X(01)00221-2</a>
  chicago: Jerecic, Jasna, Christian Schulze, Peter M Jonas, Rolf Sprengel, Peter
    Seeburg, and Joseph Bischofberger. “Impaired NMDA Receptor Function in Mouse Olfactory
    Bulb Neurons by Tetracycline-Sensitive NR1 (N598R) Expression.” <i>Molecular Brain
    Research</i>. Elsevier, 2001. <a href="https://doi.org/10.1016/S0169-328X(01)00221-2">https://doi.org/10.1016/S0169-328X(01)00221-2</a>.
  ieee: J. Jerecic, C. Schulze, P. M. Jonas, R. Sprengel, P. Seeburg, and J. Bischofberger,
    “Impaired NMDA receptor function in mouse olfactory bulb neurons by tetracycline-sensitive
    NR1 (N598R) expression,” <i>Molecular Brain Research</i>, vol. 94, no. 1–2. Elsevier,
    pp. 96–104, 2001.
  ista: Jerecic J, Schulze C, Jonas PM, Sprengel R, Seeburg P, Bischofberger J. 2001.
    Impaired NMDA receptor function in mouse olfactory bulb neurons by tetracycline-sensitive
    NR1 (N598R) expression. Molecular Brain Research. 94(1–2), 96–104.
  mla: Jerecic, Jasna, et al. “Impaired NMDA Receptor Function in Mouse Olfactory
    Bulb Neurons by Tetracycline-Sensitive NR1 (N598R) Expression.” <i>Molecular Brain
    Research</i>, vol. 94, no. 1–2, Elsevier, 2001, pp. 96–104, doi:<a href="https://doi.org/10.1016/S0169-328X(01)00221-2">10.1016/S0169-328X(01)00221-2</a>.
  short: J. Jerecic, C. Schulze, P.M. Jonas, R. Sprengel, P. Seeburg, J. Bischofberger,
    Molecular Brain Research 94 (2001) 96–104.
date_created: 2018-12-11T12:03:38Z
date_published: 2001-10-19T00:00:00Z
date_updated: 2023-05-15T13:42:32Z
day: '19'
doi: 10.1016/S0169-328X(01)00221-2
extern: '1'
external_id:
  pmid:
  - '11597769'
intvolume: '        94'
issue: 1-2
language:
- iso: eng
month: '10'
oa_version: None
page: 96 - 104
pmid: 1
publication: Molecular Brain Research
publication_identifier:
  issn:
  - 0169-328X
publication_status: published
publisher: Elsevier
publist_id: '2892'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Impaired NMDA receptor function in mouse olfactory bulb neurons by tetracycline-sensitive
  NR1 (N598R) expression
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 94
year: '2001'
...
---
_id: '3496'
abstract:
- lang: eng
  text: 'The mossy fiber-CA3 pyramidal neuron synapse is a main component of the hippocampal
    trisynaptic circuitry. Recent studies, however, suggested that inhibitory interneurons
    are the major targets of the mossy fiber system. To study the regulation of mossy
    fiber-interneuron excitation, we examined unitary and compound excitatory postsynaptic
    currents in dentate gyrus basket cells, evoked by paired recording between granule
    and basket cells or extracellular stimulation of mossy fiber collaterals. The
    application of an associative high-frequency stimulation paradigm induced posttetanic
    potentiation (PTP) followed by homosynaptic long-term potentiation (LTP). Analysis
    of numbers of failures, coefficient of variation, and paired-pulse modulation
    indicated that both PTP and LTP were expressed presynaptically. The Ca2+ chelator
    1,2-bis(2-aminophenoxy)ethane-N,N,N′,N′-tetraacetic acid (BAPTA) did not affect
    PTP or LTP at a concentration of 10 mM but attenuated LTP at a concentration of
    30 mM. Both forskolin, an adenylyl cyclase activator, and phorbolester diacetate,
    a protein kinase C stimulator, lead to a long-lasting increase in excitatory postsynaptic
    current amplitude. H-89, a protein kinase A inhibitor, and bisindolylmaleimide,
    a protein kinase C antagonist, reduced PTP, whereas only bisindolylmaleimide reduced
    LTP. These results may suggest a differential contribution of protein kinase A
    and C pathways to mossy fiber-interneuron plasticity. Interneuron PTP and LTP
    may provide mechanisms to maintain the balance between synaptic excitation of
    interneurons and that of principal neurons in the dentate gyrus-CA3 network. '
acknowledgement: We thank Drs. J. Bischofberger and M. Martina for critically reading
  an earlier version of the manuscript and A. Blomenkamp for excellent technical assistance.
  Supported by the Deutsche Forschungsgemeinschaft Sonderforschungsbereich 505/C5
  and Human Frontiers Science Program Organization Grant RG0017/98.
article_processing_charge: No
article_type: original
author:
- first_name: Henrik
  full_name: Alle, Henrik
  last_name: Alle
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Jörg
  full_name: Geiger, Jörg
  last_name: Geiger
citation:
  ama: Alle H, Jonas PM, Geiger J. PTP and LTP at a hippocampal mossy fiber-interneuron
    synapse. <i>PNAS</i>. 2001;98(25):14708-14713. doi:<a href="https://doi.org/10.1073/pnas.251610898
    ">10.1073/pnas.251610898 </a>
  apa: Alle, H., Jonas, P. M., &#38; Geiger, J. (2001). PTP and LTP at a hippocampal
    mossy fiber-interneuron synapse. <i>PNAS</i>. National Academy of Sciences. <a
    href="https://doi.org/10.1073/pnas.251610898 ">https://doi.org/10.1073/pnas.251610898
    </a>
  chicago: Alle, Henrik, Peter M Jonas, and Jörg Geiger. “PTP and LTP at a Hippocampal
    Mossy Fiber-Interneuron Synapse.” <i>PNAS</i>. National Academy of Sciences, 2001.
    <a href="https://doi.org/10.1073/pnas.251610898 ">https://doi.org/10.1073/pnas.251610898
    </a>.
  ieee: H. Alle, P. M. Jonas, and J. Geiger, “PTP and LTP at a hippocampal mossy fiber-interneuron
    synapse,” <i>PNAS</i>, vol. 98, no. 25. National Academy of Sciences, pp. 14708–14713,
    2001.
  ista: Alle H, Jonas PM, Geiger J. 2001. PTP and LTP at a hippocampal mossy fiber-interneuron
    synapse. PNAS. 98(25), 14708–14713.
  mla: Alle, Henrik, et al. “PTP and LTP at a Hippocampal Mossy Fiber-Interneuron
    Synapse.” <i>PNAS</i>, vol. 98, no. 25, National Academy of Sciences, 2001, pp.
    14708–13, doi:<a href="https://doi.org/10.1073/pnas.251610898 ">10.1073/pnas.251610898
    </a>.
  short: H. Alle, P.M. Jonas, J. Geiger, PNAS 98 (2001) 14708–14713.
date_created: 2018-12-11T12:03:38Z
date_published: 2001-12-04T00:00:00Z
date_updated: 2023-05-15T11:08:08Z
day: '04'
doi: '10.1073/pnas.251610898 '
extern: '1'
external_id:
  pmid:
  - '11734656'
intvolume: '        98'
issue: '25'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC64746/
month: '12'
oa: 1
oa_version: None
page: 14708 - 14713
pmid: 1
publication: PNAS
publication_identifier:
  issn:
  - 0027-8424
publication_status: published
publisher: National Academy of Sciences
publist_id: '2891'
quality_controlled: '1'
scopus_import: '1'
status: public
title: PTP and LTP at a hippocampal mossy fiber-interneuron synapse
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 98
year: '2001'
...
---
_id: '3507'
abstract:
- lang: eng
  text: A molecular classification method is based on a space filling description
    of a molecule. The three dimensional body corresponding to the space filling molecular
    structure is divided into Voronoi regions to provide a basis for efficiently processing
    local structural information. A Delaunay triangulation provides a basis for systematically
    processing information relating to the Voronoi regions into shape descriptors
    in the form of topological elements. Preferably, additional shape and/or property
    descriptors are included in the classification method. The classification methods
    generally are used to identify similarities between molecules that can be used
    as property predictors for a variety of applications. Generally, the property
    predictions are the basis for selection of compounds for incorporation into efficacy
    evaluations.
applicant:
- Jie Liang, Herbert Edelsbrunner
article_processing_charge: No
author:
- first_name: Jie
  full_name: Liang, Jie
  last_name: Liang
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: Liang J, Edelsbrunner H. Molecular classification for property prediction.
    2001.
  apa: Liang, J., &#38; Edelsbrunner, H. (2001). Molecular classification for property
    prediction.
  chicago: Liang, Jie, and Herbert Edelsbrunner. “Molecular Classification for Property
    Prediction,” 2001.
  ieee: J. Liang and H. Edelsbrunner, “Molecular classification for property prediction.”
    2001.
  ista: Liang J, Edelsbrunner H. 2001. Molecular classification for property prediction.
  mla: Liang, Jie, and Herbert Edelsbrunner. <i>Molecular Classification for Property
    Prediction</i>. 2001.
  short: J. Liang, H. Edelsbrunner, (2001).
date_created: 2018-12-11T12:03:41Z
date_published: 2001-01-30T00:00:00Z
date_updated: 2022-01-05T15:12:42Z
day: '30'
extern: '1'
ipc: G16C20/70 ; G16B15/00
ipn: US6182016B1
main_file_link:
- open_access: '1'
  url: https://patents.google.com/patent/US6182016B1
month: '01'
oa: 1
oa_version: Published Version
publication_date: 2001-01-30
publist_id: '2880'
status: public
title: Molecular classification for property prediction
type: patent
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2001'
...
---
_id: '3517'
abstract:
- lang: eng
  text: 'A modular multichannel microdrive (''hyperdrive'') is described. The microdrive
    uses printed circuit board technology and flexible fused silica capillaries. The
    modular design allows for the fabrication of 4-32 independently movable electrodes
    or `tetrodes''. The drives are re-usable and re-loading the drive with electrodes
    is simple. '
article_processing_charge: No
article_type: original
author:
- first_name: Imre
  full_name: Szabo, Imre
  last_name: Szabo
- first_name: András
  full_name: Czurkó, András
  last_name: Czurkó
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
- first_name: Hajima
  full_name: Hirase, Hajima
  last_name: Hirase
- first_name: Xavier
  full_name: Leinekugel, Xavier
  last_name: Leinekugel
- first_name: György
  full_name: Buzsáki, György
  last_name: Buzsáki
citation:
  ama: Szabo I, Czurkó A, Csicsvari JL, Hirase H, Leinekugel X, Buzsáki G. The application
    of printed circuit board technology for fabrication of multi-channel micro-drives.
    <i>Journal of Neuroscience Methods</i>. 2001;105(1):105-110. doi:<a href="https://doi.org/10.1016/S0165-0270(00)00362-9">10.1016/S0165-0270(00)00362-9</a>
  apa: Szabo, I., Czurkó, A., Csicsvari, J. L., Hirase, H., Leinekugel, X., &#38;
    Buzsáki, G. (2001). The application of printed circuit board technology for fabrication
    of multi-channel micro-drives. <i>Journal of Neuroscience Methods</i>. Elsevier.
    <a href="https://doi.org/10.1016/S0165-0270(00)00362-9">https://doi.org/10.1016/S0165-0270(00)00362-9</a>
  chicago: Szabo, Imre, András Czurkó, Jozsef L Csicsvari, Hajima Hirase, Xavier Leinekugel,
    and György Buzsáki. “The Application of Printed Circuit Board Technology for Fabrication
    of Multi-Channel Micro-Drives.” <i>Journal of Neuroscience Methods</i>. Elsevier,
    2001. <a href="https://doi.org/10.1016/S0165-0270(00)00362-9">https://doi.org/10.1016/S0165-0270(00)00362-9</a>.
  ieee: I. Szabo, A. Czurkó, J. L. Csicsvari, H. Hirase, X. Leinekugel, and G. Buzsáki,
    “The application of printed circuit board technology for fabrication of multi-channel
    micro-drives,” <i>Journal of Neuroscience Methods</i>, vol. 105, no. 1. Elsevier,
    pp. 105–110, 2001.
  ista: Szabo I, Czurkó A, Csicsvari JL, Hirase H, Leinekugel X, Buzsáki G. 2001.
    The application of printed circuit board technology for fabrication of multi-channel
    micro-drives. Journal of Neuroscience Methods. 105(1), 105–110.
  mla: Szabo, Imre, et al. “The Application of Printed Circuit Board Technology for
    Fabrication of Multi-Channel Micro-Drives.” <i>Journal of Neuroscience Methods</i>,
    vol. 105, no. 1, Elsevier, 2001, pp. 105–10, doi:<a href="https://doi.org/10.1016/S0165-0270(00)00362-9">10.1016/S0165-0270(00)00362-9</a>.
  short: I. Szabo, A. Czurkó, J.L. Csicsvari, H. Hirase, X. Leinekugel, G. Buzsáki,
    Journal of Neuroscience Methods 105 (2001) 105–110.
date_created: 2018-12-11T12:03:45Z
date_published: 2001-01-30T00:00:00Z
date_updated: 2023-05-15T10:50:39Z
day: '30'
doi: 10.1016/S0165-0270(00)00362-9
extern: '1'
external_id:
  pmid:
  - '11166371'
intvolume: '       105'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 105 - 110
pmid: 1
publication: Journal of Neuroscience Methods
publication_identifier:
  issn:
  - 0165-0270
publication_status: published
publisher: Elsevier
publist_id: '2868'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The application of printed circuit board technology for fabrication of multi-channel
  micro-drives
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 105
year: '2001'
...
---
_id: '3540'
abstract:
- lang: eng
  text: What determines the firing rate of cortical neurons in the absence of external
    sensory input or motor behavior, such as during sleep? Hero we report that, in
    a familiar environment, the discharge frequency of simultaneously recorded individual
    CA1 pyramidal neurons and the coactivation of cell pairs remain highly correlated
    across sleep-wake-steep sequences. However, both measures were affected when new
    sets of neurons were activated in a novel environment. Nevertheless, the grand
    mean firing rate of the whole pyramidal cell population remained constant across
    behavioral states and testing conditions. The findings suggest that long-term
    firing patterns of single cells can be modified by experience. We hypothesize
    that increased firing rates of recently used neurons are associated with a concomitant
    decrease in the discharge activity of the remaining population, leaving the mean
    excitability of the hippocampal network unaltered.
acknowledgement: This work was supported by National Institutes of Health Grants NS34994
  and MH54671, the F. M. Kirby Foundation, the Human Frontier Science Program (X.L.),
  and the Uehara Memorial Foundation (H.H.).
article_processing_charge: No
article_type: original
author:
- first_name: Hajima
  full_name: Hirase, Hajima
  last_name: Hirase
- first_name: Xavier
  full_name: Leinekugel, Xavier
  last_name: Leinekugel
- first_name: András
  full_name: Czurkó, András
  last_name: Czurkó
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
- first_name: György
  full_name: Buzsáki, György
  last_name: Buzsáki
citation:
  ama: Hirase H, Leinekugel X, Czurkó A, Csicsvari JL, Buzsáki G. Firing rates of
    hippocampal neurons are preserved during subsequent sleep episodes and modified
    by novel awake experience. <i>PNAS</i>. 2001;98(16):9386-9390. doi:<a href="https://doi.org/10.1073/pnas.161274398">10.1073/pnas.161274398</a>
  apa: Hirase, H., Leinekugel, X., Czurkó, A., Csicsvari, J. L., &#38; Buzsáki, G.
    (2001). Firing rates of hippocampal neurons are preserved during subsequent sleep
    episodes and modified by novel awake experience. <i>PNAS</i>. National Academy
    of Sciences. <a href="https://doi.org/10.1073/pnas.161274398">https://doi.org/10.1073/pnas.161274398</a>
  chicago: Hirase, Hajima, Xavier Leinekugel, András Czurkó, Jozsef L Csicsvari, and
    György Buzsáki. “Firing Rates of Hippocampal Neurons Are Preserved during Subsequent
    Sleep Episodes and Modified by Novel Awake Experience.” <i>PNAS</i>. National
    Academy of Sciences, 2001. <a href="https://doi.org/10.1073/pnas.161274398">https://doi.org/10.1073/pnas.161274398</a>.
  ieee: H. Hirase, X. Leinekugel, A. Czurkó, J. L. Csicsvari, and G. Buzsáki, “Firing
    rates of hippocampal neurons are preserved during subsequent sleep episodes and
    modified by novel awake experience,” <i>PNAS</i>, vol. 98, no. 16. National Academy
    of Sciences, pp. 9386–9390, 2001.
  ista: Hirase H, Leinekugel X, Czurkó A, Csicsvari JL, Buzsáki G. 2001. Firing rates
    of hippocampal neurons are preserved during subsequent sleep episodes and modified
    by novel awake experience. PNAS. 98(16), 9386–9390.
  mla: Hirase, Hajima, et al. “Firing Rates of Hippocampal Neurons Are Preserved during
    Subsequent Sleep Episodes and Modified by Novel Awake Experience.” <i>PNAS</i>,
    vol. 98, no. 16, National Academy of Sciences, 2001, pp. 9386–90, doi:<a href="https://doi.org/10.1073/pnas.161274398">10.1073/pnas.161274398</a>.
  short: H. Hirase, X. Leinekugel, A. Czurkó, J.L. Csicsvari, G. Buzsáki, PNAS 98
    (2001) 9386–9390.
date_created: 2018-12-11T12:03:52Z
date_published: 2001-07-31T00:00:00Z
date_updated: 2023-05-12T10:07:41Z
day: '31'
doi: 10.1073/pnas.161274398
extern: '1'
external_id:
  pmid:
  - '11470910'
intvolume: '        98'
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC55430/
month: '07'
oa: 1
oa_version: Published Version
page: 9386 - 9390
pmid: 1
publication: PNAS
publication_identifier:
  issn:
  - 0027-8424
publication_status: published
publisher: National Academy of Sciences
publist_id: '2846'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Firing rates of hippocampal neurons are preserved during subsequent sleep episodes
  and modified by novel awake experience
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 98
year: '2001'
...
---
_id: '3546'
abstract:
- lang: eng
  text: Local versus distant coherence of hippocampal CA1 pyramidal cells was investigated
    in the behaving rat. Temporal cross-correlation of pyramidal cells revealed a
    significantly stronger relationship among local (&lt;140 &lt;mu&gt;m) pyramidal
    neurons compared with distant (&gt;300 mum) neurons during non-theta-associated
    immobility and sleep but not during theta-associated running and walking. In contrast,
    cross-correlation between local pyramidal cell-interneuron pairs was significantly
    stronger than between distant pairs during theta oscillations but were similar
    during non-theta-associated behaviors. We suggest that network state-dependent
    functional clustering of neuronal activity emerges because of the differential
    contribution of the main excitatory inputs, the perforant path, and Schaffer collaterals
    during theta and non-theta behaviors.
article_processing_charge: No
article_type: original
author:
- first_name: Hajima
  full_name: Hirase, Hajima
  last_name: Hirase
- first_name: Xavier
  full_name: Leinekugel, Xavier
  last_name: Leinekugel
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
- first_name: András
  full_name: Czurkó, András
  last_name: Czurkó
- first_name: György
  full_name: Buzsáki, György
  last_name: Buzsáki
citation:
  ama: Hirase H, Leinekugel X, Csicsvari JL, Czurkó A, Buzsáki G. Behavior-dependent
    states of the hippocampal network affect functional clustering of neurons. <i>Journal
    of Neuroscience</i>. 2001;21(10). doi:<a href="https://doi.org/10.1523/JNEUROSCI.21-10-j0003.2001">10.1523/JNEUROSCI.21-10-j0003.2001</a>
  apa: Hirase, H., Leinekugel, X., Csicsvari, J. L., Czurkó, A., &#38; Buzsáki, G.
    (2001). Behavior-dependent states of the hippocampal network affect functional
    clustering of neurons. <i>Journal of Neuroscience</i>. Society for Neuroscience.
    <a href="https://doi.org/10.1523/JNEUROSCI.21-10-j0003.2001">https://doi.org/10.1523/JNEUROSCI.21-10-j0003.2001</a>
  chicago: Hirase, Hajima, Xavier Leinekugel, Jozsef L Csicsvari, András Czurkó, and
    György Buzsáki. “Behavior-Dependent States of the Hippocampal Network Affect Functional
    Clustering of Neurons.” <i>Journal of Neuroscience</i>. Society for Neuroscience,
    2001. <a href="https://doi.org/10.1523/JNEUROSCI.21-10-j0003.2001">https://doi.org/10.1523/JNEUROSCI.21-10-j0003.2001</a>.
  ieee: H. Hirase, X. Leinekugel, J. L. Csicsvari, A. Czurkó, and G. Buzsáki, “Behavior-dependent
    states of the hippocampal network affect functional clustering of neurons,” <i>Journal
    of Neuroscience</i>, vol. 21, no. 10. Society for Neuroscience, 2001.
  ista: Hirase H, Leinekugel X, Csicsvari JL, Czurkó A, Buzsáki G. 2001. Behavior-dependent
    states of the hippocampal network affect functional clustering of neurons. Journal
    of Neuroscience. 21(10).
  mla: Hirase, Hajima, et al. “Behavior-Dependent States of the Hippocampal Network
    Affect Functional Clustering of Neurons.” <i>Journal of Neuroscience</i>, vol.
    21, no. 10, Society for Neuroscience, 2001, doi:<a href="https://doi.org/10.1523/JNEUROSCI.21-10-j0003.2001">10.1523/JNEUROSCI.21-10-j0003.2001</a>.
  short: H. Hirase, X. Leinekugel, J.L. Csicsvari, A. Czurkó, G. Buzsáki, Journal
    of Neuroscience 21 (2001).
date_created: 2018-12-11T12:03:54Z
date_published: 2001-05-15T00:00:00Z
date_updated: 2023-05-12T09:47:39Z
day: '15'
doi: 10.1523/JNEUROSCI.21-10-j0003.2001
extern: '1'
external_id:
  pmid:
  - '11319243'
intvolume: '        21'
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://pubmed.ncbi.nlm.nih.gov/11319243/
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Neuroscience
publication_identifier:
  issn:
  - 0270-6474
publication_status: published
publisher: Society for Neuroscience
publist_id: '2839'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Behavior-dependent states of the hippocampal network affect functional clustering
  of neurons
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 21
year: '2001'
...
---
_id: '3586'
abstract:
- lang: eng
  text: The book combines topics in mathematics (geometry and topology), computer
    science (algorithms), and engineering (mesh generation). The original motivation
    for these topics was the difficulty faced (both conceptually and in the technical
    execution) in any attempt to combine elements of combinatorial and of numerical
    algorithms. Mesh generation is a topic where a meaningful combination of these
    different approaches to problem solving is inevitable. The book develops methods
    from both areas that are amenable to combination, and explains recent breakthrough
    solutions to meshing that fit into this category.The book should be an ideal graduate
    text for courses on mesh generation. The specific material is selected giving
    preference to topics that are elementary, attractive, lend themselves to teaching,
    useful, and interesting.
article_processing_charge: No
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: Edelsbrunner H. <i>Geometry and Topology for Mesh Generation</i>. Vol 7. Cambridge
    University Press; 2001. doi:<a href="https://doi.org/10.1017/CBO9780511530067">10.1017/CBO9780511530067</a>
  apa: Edelsbrunner, H. (2001). <i>Geometry and Topology for Mesh Generation</i> (Vol.
    7). Cambridge University Press. <a href="https://doi.org/10.1017/CBO9780511530067">https://doi.org/10.1017/CBO9780511530067</a>
  chicago: Edelsbrunner, Herbert. <i>Geometry and Topology for Mesh Generation</i>.
    Vol. 7. Cambridge Monographs on Applied and Computational Mathematics. Cambridge
    University Press, 2001. <a href="https://doi.org/10.1017/CBO9780511530067">https://doi.org/10.1017/CBO9780511530067</a>.
  ieee: H. Edelsbrunner, <i>Geometry and Topology for Mesh Generation</i>, vol. 7.
    Cambridge University Press, 2001.
  ista: Edelsbrunner H. 2001. Geometry and Topology for Mesh Generation, Cambridge
    University Press, 190p.
  mla: Edelsbrunner, Herbert. <i>Geometry and Topology for Mesh Generation</i>. Vol.
    7, Cambridge University Press, 2001, doi:<a href="https://doi.org/10.1017/CBO9780511530067">10.1017/CBO9780511530067</a>.
  short: H. Edelsbrunner, Geometry and Topology for Mesh Generation, Cambridge University
    Press, 2001.
date_created: 2018-12-11T12:04:06Z
date_published: 2001-05-28T00:00:00Z
date_updated: 2021-12-22T08:46:46Z
day: '28'
doi: 10.1017/CBO9780511530067
extern: '1'
intvolume: '         7'
language:
- iso: eng
month: '05'
oa_version: None
page: '190'
publication_identifier:
  eisbn:
  - ' 978-0-5115-3006-7'
  isbn:
  - 0-521-79309-2
publication_status: published
publisher: Cambridge University Press
publist_id: '2798'
quality_controlled: '1'
related_material:
  link:
  - description: available via catalog IST BookList
    relation: other
    url: https://koha.app.ist.ac.at/cgi-bin/koha/opac-detail.pl?biblionumber=3508
series_title: Cambridge Monographs on Applied and Computational Mathematics
status: public
title: Geometry and Topology for Mesh Generation
type: book
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 7
year: '2001'
...
---
_id: '3596'
article_processing_charge: No
author:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Barton NH. Mendel and mathematics. <i>Trends in Genetics</i>. 2001;17:420-420.
    doi:<a href="https://doi.org/10.1016/S0168-9525(01)02315-0">10.1016/S0168-9525(01)02315-0</a>
  apa: Barton, N. H. (2001). Mendel and mathematics. <i>Trends in Genetics</i>. Elsevier.
    <a href="https://doi.org/10.1016/S0168-9525(01)02315-0">https://doi.org/10.1016/S0168-9525(01)02315-0</a>
  chicago: Barton, Nicholas H. “Mendel and Mathematics.” <i>Trends in Genetics</i>.
    Elsevier, 2001. <a href="https://doi.org/10.1016/S0168-9525(01)02315-0">https://doi.org/10.1016/S0168-9525(01)02315-0</a>.
  ieee: N. H. Barton, “Mendel and mathematics,” <i>Trends in Genetics</i>, vol. 17.
    Elsevier, pp. 420–420, 2001.
  ista: Barton NH. 2001. Mendel and mathematics. Trends in Genetics. 17, 420–420.
  mla: Barton, Nicholas H. “Mendel and Mathematics.” <i>Trends in Genetics</i>, vol.
    17, Elsevier, 2001, pp. 420–420, doi:<a href="https://doi.org/10.1016/S0168-9525(01)02315-0">10.1016/S0168-9525(01)02315-0</a>.
  short: N.H. Barton, Trends in Genetics 17 (2001) 420–420.
date_created: 2018-12-11T12:04:09Z
date_published: 2001-07-01T00:00:00Z
date_updated: 2023-05-11T13:50:32Z
day: '01'
doi: 10.1016/S0168-9525(01)02315-0
extern: '1'
intvolume: '        17'
language:
- iso: eng
month: '07'
oa_version: None
page: 420 - 420
publication: Trends in Genetics
publication_identifier:
  issn:
  - 0168-9479
publication_status: published
publisher: Elsevier
publist_id: '2787'
quality_controlled: '1'
status: public
title: Mendel and mathematics
type: review
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 17
year: '2001'
...
---
_id: '3622'
abstract:
- lang: eng
  text: The extent of genetic variation in fitness and its components and genetic
    variation's dependence on environmental conditions remain key issues in evolutionary
    biology. We present measurements of genetic variation in preadult viability in
    a laboratory-adapted population of Drosophila melanogaster, made at four different
    densities. By crossing flies heterozygous for a wild-type chromosome and one of
    two different balancers (TM1, TM2), we measure both heterozygous (TM1/+, TM2/+)
    and homozygous (+/+) viability relative to a standard genotype (TM1/TM2). Forty
    wild-type chromosomes were tested, of which 10 were chosen to be homozygous viable.
    The mean numbers produced varied significantly between chromosome lines, with
    an estimated between-line variance in loge numbers of 0.013. Relative viabilities
    also varied significantly across chromosome lines, with a variance in loge homozygous
    viability of 1.76 and of loge heterozygous viability of 0.165. The between-line
    variance for numbers emerging increased with density, from 0.009 at lowest density
    to 0.079 at highest. The genetic variance in relative viability increases with
    density, but not significantly. Overall, the effects of different chromosomes
    on relative viability were remarkably consistent across densities and across the
    two heterozygous genotypes (TM1, TM2). The 10 lines that carried homozygous viable
    wild-type chromosomes produced significantly more adults than the 30 lethal lines
    at low density and significantly fewer adults at the highest density. Similarly,
    there was a positive correlation between heterozygous viability and mean numbers
    at low density, but a negative correlation at high density.
acknowledgement: We thank SERC and BBSRC for financial support and R.Miah, G. Geddes,
  and E. Garcia for technical assistance.
article_processing_charge: No
article_type: original
author:
- first_name: Michael
  full_name: Gardner, Michael
  last_name: Gardner
- first_name: Kevin
  full_name: Fowler, Kevin
  last_name: Fowler
- first_name: Linda
  full_name: Patridge, Linda
  last_name: Patridge
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Gardner M, Fowler K, Patridge L, Barton NH. Genetic variation for preadult
    viability in Drosophila melanogaster. <i>Evolution</i>. 2001;55(8):1609-1620.
    doi:<a href="https://doi.org/10.1111/j.0014-3820.2001.tb00680.x">10.1111/j.0014-3820.2001.tb00680.x</a>
  apa: Gardner, M., Fowler, K., Patridge, L., &#38; Barton, N. H. (2001). Genetic
    variation for preadult viability in Drosophila melanogaster. <i>Evolution</i>.
    Wiley-Blackwell. <a href="https://doi.org/10.1111/j.0014-3820.2001.tb00680.x">https://doi.org/10.1111/j.0014-3820.2001.tb00680.x</a>
  chicago: Gardner, Michael, Kevin Fowler, Linda Patridge, and Nicholas H Barton.
    “Genetic Variation for Preadult Viability in Drosophila Melanogaster.” <i>Evolution</i>.
    Wiley-Blackwell, 2001. <a href="https://doi.org/10.1111/j.0014-3820.2001.tb00680.x">https://doi.org/10.1111/j.0014-3820.2001.tb00680.x</a>.
  ieee: M. Gardner, K. Fowler, L. Patridge, and N. H. Barton, “Genetic variation for
    preadult viability in Drosophila melanogaster,” <i>Evolution</i>, vol. 55, no.
    8. Wiley-Blackwell, pp. 1609–1620, 2001.
  ista: Gardner M, Fowler K, Patridge L, Barton NH. 2001. Genetic variation for preadult
    viability in Drosophila melanogaster. Evolution. 55(8), 1609–1620.
  mla: Gardner, Michael, et al. “Genetic Variation for Preadult Viability in Drosophila
    Melanogaster.” <i>Evolution</i>, vol. 55, no. 8, Wiley-Blackwell, 2001, pp. 1609–20,
    doi:<a href="https://doi.org/10.1111/j.0014-3820.2001.tb00680.x">10.1111/j.0014-3820.2001.tb00680.x</a>.
  short: M. Gardner, K. Fowler, L. Patridge, N.H. Barton, Evolution 55 (2001) 1609–1620.
date_created: 2018-12-11T12:04:18Z
date_published: 2001-08-01T00:00:00Z
date_updated: 2023-05-11T13:43:30Z
day: '01'
doi: 10.1111/j.0014-3820.2001.tb00680.x
extern: '1'
external_id:
  pmid:
  - '11580020'
intvolume: '        55'
issue: '8'
language:
- iso: eng
main_file_link:
- url: http://www.jstor.org/stable/2680379
month: '08'
oa_version: None
page: 1609 - 1620
pmid: 1
publication: Evolution
publication_identifier:
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2761'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genetic variation for preadult viability in Drosophila melanogaster
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 55
year: '2001'
...
---
_id: '3927'
abstract:
- lang: eng
  text: TNF-alpha has been clearly identified as central mediator of T cell activation-induced
    acute hepatic injury in mice, e.g., Con A hepatitis. In this model, liver injury
    depends on both TNFRs, i.e., the 55-kDa TNFR1 as well as the 75-kDa TNFR2. We
    show in this report that the hepatic TNFRs are not transcriptionally regulated,
    but are regulated by receptor shedding. TNF directly mediates hepatocellular death
    by activation of TNFR1 but also induces the expression of inflammatory proteins,
    such as cytokines and adhesion molecules. Here we provide evidence that resistance
    of TNFR1(-/-) and TNFR2(-/-) mice against Con A hepatitis is not due to an impaired
    production of the central mediators TNF and IFN-gamma. Con A injection results
    in a massive induction of ICAM-1, VCAM-1, and E-selectin in the liver. Lack of
    either one of both TNFRs did not change adhesion molecule expression in the livers
    of Con A-treated mice, presumably reflecting the fact that other endothelial cell-activating
    cytokines up-regulated adhesion molecule expression. However, treatment of TNFR1(-/-)
    and TNFR2(-/-) mice with murine rTNF revealed a predominant role for TNFR1 for
    the induction of hepatic adhesion molecule expression. Pretreatment with blocking
    Abs against E- and P-selectin or of ICAM(-/-) mice with anti-VCAM-1 Abs failed
    to prevent Con A hepatitis, although accumulation of the critical cell population,
    i.e., CD4(+) T cells was significantly inhibited. Hence, up-regulation of adhesion
    molecules during acute hepatitis unlikely contributes to organ injury but rather
    represents a defense mechanism.
acknowledgement: We thank Dr. H. Bluethmann (F. Hoffmann-LaRoche AG, Basle, Switzerland)
  for kindly providing us TNFR knockout mice. We are indebted to Dr. G. R. Adolf (Bender
  & Co Vienna, Austria) for providing recombinant murine TNF. We are also indebted
  to Dr. D. Vestweber for providing anti-P-selectin mAb (23). We thank Dr. W. Neuhuber
  (Institute of  Anatomy, University of Erlangen-NÜrnberg, Erlangen, Germany) for
  experimental support regarding confocal laser scanning microscopy. The perfect technical
  assistance of Andrea Agli is gratefully acknowledged.
article_processing_charge: No
article_type: original
author:
- first_name: Dominik
  full_name: Wolf, Dominik
  last_name: Wolf
- first_name: Rupert
  full_name: Hallmann, Rupert
  last_name: Hallmann
- first_name: Gabriele
  full_name: Sass, Gabriele
  last_name: Sass
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: Sabine
  full_name: Küsters, Sabine
  last_name: Küsters
- first_name: Bastian
  full_name: Fregien, Bastian
  last_name: Fregien
- first_name: Christian
  full_name: Trautwein, Christian
  last_name: Trautwein
- first_name: Gisa
  full_name: Tiegs, Gisa
  last_name: Tiegs
citation:
  ama: Wolf D, Hallmann R, Sass G, et al. TNF-α-induced expression of adhesion molecules
    in the liver is under the control of TNFR1--relevance for concanavalin A-induced
    hepatitis. <i>Journal of Immunology</i>. 2001;166(2):1300-1307. doi:<a href="https://doi.org/10.4049/jimmunol.166.2.1300">10.4049/jimmunol.166.2.1300</a>
  apa: Wolf, D., Hallmann, R., Sass, G., Sixt, M. K., Küsters, S., Fregien, B., …
    Tiegs, G. (2001). TNF-α-induced expression of adhesion molecules in the liver
    is under the control of TNFR1--relevance for concanavalin A-induced hepatitis.
    <i>Journal of Immunology</i>. American Association of Immunologists. <a href="https://doi.org/10.4049/jimmunol.166.2.1300">https://doi.org/10.4049/jimmunol.166.2.1300</a>
  chicago: Wolf, Dominik, Rupert Hallmann, Gabriele Sass, Michael K Sixt, Sabine Küsters,
    Bastian Fregien, Christian Trautwein, and Gisa Tiegs. “TNF-α-Induced Expression
    of Adhesion Molecules in the Liver Is under the Control of TNFR1--Relevance for
    Concanavalin A-Induced Hepatitis.” <i>Journal of Immunology</i>. American Association
    of Immunologists, 2001. <a href="https://doi.org/10.4049/jimmunol.166.2.1300">https://doi.org/10.4049/jimmunol.166.2.1300</a>.
  ieee: D. Wolf <i>et al.</i>, “TNF-α-induced expression of adhesion molecules in
    the liver is under the control of TNFR1--relevance for concanavalin A-induced
    hepatitis,” <i>Journal of Immunology</i>, vol. 166, no. 2. American Association
    of Immunologists, pp. 1300–1307, 2001.
  ista: Wolf D, Hallmann R, Sass G, Sixt MK, Küsters S, Fregien B, Trautwein C, Tiegs
    G. 2001. TNF-α-induced expression of adhesion molecules in the liver is under
    the control of TNFR1--relevance for concanavalin A-induced hepatitis. Journal
    of Immunology. 166(2), 1300–1307.
  mla: Wolf, Dominik, et al. “TNF-α-Induced Expression of Adhesion Molecules in the
    Liver Is under the Control of TNFR1--Relevance for Concanavalin A-Induced Hepatitis.”
    <i>Journal of Immunology</i>, vol. 166, no. 2, American Association of Immunologists,
    2001, pp. 1300–07, doi:<a href="https://doi.org/10.4049/jimmunol.166.2.1300">10.4049/jimmunol.166.2.1300</a>.
  short: D. Wolf, R. Hallmann, G. Sass, M.K. Sixt, S. Küsters, B. Fregien, C. Trautwein,
    G. Tiegs, Journal of Immunology 166 (2001) 1300–1307.
date_created: 2018-12-11T12:05:56Z
date_published: 2001-01-15T00:00:00Z
date_updated: 2023-05-11T13:37:29Z
day: '15'
doi: 10.4049/jimmunol.166.2.1300
extern: '1'
external_id:
  pmid:
  - '11145713'
intvolume: '       166'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.jimmunol.org/content/166/2/1300.long
month: '01'
oa: 1
oa_version: None
page: 1300 - 1307
pmid: 1
publication: Journal of Immunology
publication_identifier:
  issn:
  - 0022-1767
publication_status: published
publisher: American Association of Immunologists
publist_id: '2200'
quality_controlled: '1'
status: public
title: TNF-α-induced expression of adhesion molecules in the liver is under the control
  of TNFR1--relevance for concanavalin A-induced hepatitis
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 166
year: '2001'
...
---
_id: '3928'
abstract:
- lang: eng
  text: Regulated adhesion of leukocytes to the extracellular matrix is essential
    for transmigration of blood vessels and subsequent migration into the stroma of
    inflamed tissues. Although beta(2)-integrins play an indisputable role in adhesion
    of polymorphonuclear granulocytes (PMN) to endothelium, we show here that beta(1)-
    and beta(3)-integrins but not beta(2)-integrin are essential for the adhesion
    to and migration on extracellular matrix molecules of the endothelial cell basement
    membrane and subjacent interstitial matrix. Mouse wild type and beta(2)-integrin
    null PMN and the progranulocytic cell line 32DC13 were employed in in vitro adhesion
    and migration assays using extracellular matrix molecules expressed at sites of
    extravasation in vivo, in particular the endothelial cell laminins 8 and 10. Wild
    type and beta(2)-integrin null PMN showed the same pattern of ECM binding, indicating
    that beta(2)-integrins do not mediate specific adhesion of PMN to the extracellular
    matrix molecules tested; binding was observed to the interstitial matrix molecules,
    fibronectin and vitronectin, via integrins alpha(5)beta(1) and alpha(v)beta(3),
    respectively; to laminin 10 via alpha(6)beta(1); but not to laminins 1, 2, and
    8, collagen type I and IV, perlecan, or tenascin-C. PMN binding to laminins 1,
    2, and 8 could not be induced despite surface expression of functionally active
    integrin alpha(6)beta(1), a major laminin receptor, demonstrating that expression
    of alpha(6)beta(1) alone is insufficient for ligand binding and suggesting the
    involvement of accessory factors. Nevertheless, laminins 1, 8, and 10 supported
    PMN migration, indicating that differential cellular signaling via laminins is
    independent of the extent of adhesion. The data demonstrate that adhesive and
    nonadhesive interactions with components of the endothelial cell basement membrane
    and subjacent interstitium play decisive roles in controlling PMN movement into
    sites of inflammation and illustrate that beta(2)-integrins are not essential
    for such interactions.
acknowledgement: We thank Dr. T. Winkler for carrying out flow cytometry analysis,
  Dr. Simon Goodman for providing cyclic RGD peptides and helpful discussions, and
  Stefanie Karosi and Thomas Samson for critical review of the manuscript. This work
  would not have been possible without the expert technical assistance of Friederike
  Pausch.
article_processing_charge: No
article_type: original
author:
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: Rupert
  full_name: Hallmann, Rupert
  last_name: Hallmann
- first_name: Olaf
  full_name: Wendler, Olaf
  last_name: Wendler
- first_name: Karin
  full_name: Scharffetter Kochanek, Karin
  last_name: Scharffetter Kochanek
- first_name: Lydia
  full_name: Sorokin, Lydia
  last_name: Sorokin
citation:
  ama: Sixt MK, Hallmann R, Wendler O, Scharffetter Kochanek K, Sorokin L. Cell adhesion
    and migration properties of β2-integrin negative polymorphonuclear granulocytes
    on defined extracellular matrix molecules. Relevance for leukocyte extravasation.
    <i>Journal of Biological Chemistry</i>. 2001;276(22):18878-18887. doi:<a href="https://doi.org/10.1074/jbc.M010898200">10.1074/jbc.M010898200</a>
  apa: Sixt, M. K., Hallmann, R., Wendler, O., Scharffetter Kochanek, K., &#38; Sorokin,
    L. (2001). Cell adhesion and migration properties of β2-integrin negative polymorphonuclear
    granulocytes on defined extracellular matrix molecules. Relevance for leukocyte
    extravasation. <i>Journal of Biological Chemistry</i>. American Society for Biochemistry
    and Molecular Biology. <a href="https://doi.org/10.1074/jbc.M010898200">https://doi.org/10.1074/jbc.M010898200</a>
  chicago: Sixt, Michael K, Rupert Hallmann, Olaf Wendler, Karin Scharffetter Kochanek,
    and Lydia Sorokin. “Cell Adhesion and Migration Properties of Β2-Integrin Negative
    Polymorphonuclear Granulocytes on Defined Extracellular Matrix Molecules. Relevance
    for Leukocyte Extravasation.” <i>Journal of Biological Chemistry</i>. American
    Society for Biochemistry and Molecular Biology, 2001. <a href="https://doi.org/10.1074/jbc.M010898200">https://doi.org/10.1074/jbc.M010898200</a>.
  ieee: M. K. Sixt, R. Hallmann, O. Wendler, K. Scharffetter Kochanek, and L. Sorokin,
    “Cell adhesion and migration properties of β2-integrin negative polymorphonuclear
    granulocytes on defined extracellular matrix molecules. Relevance for leukocyte
    extravasation,” <i>Journal of Biological Chemistry</i>, vol. 276, no. 22. American
    Society for Biochemistry and Molecular Biology, pp. 18878–18887, 2001.
  ista: Sixt MK, Hallmann R, Wendler O, Scharffetter Kochanek K, Sorokin L. 2001.
    Cell adhesion and migration properties of β2-integrin negative polymorphonuclear
    granulocytes on defined extracellular matrix molecules. Relevance for leukocyte
    extravasation. Journal of Biological Chemistry. 276(22), 18878–18887.
  mla: Sixt, Michael K., et al. “Cell Adhesion and Migration Properties of Β2-Integrin
    Negative Polymorphonuclear Granulocytes on Defined Extracellular Matrix Molecules.
    Relevance for Leukocyte Extravasation.” <i>Journal of Biological Chemistry</i>,
    vol. 276, no. 22, American Society for Biochemistry and Molecular Biology, 2001,
    pp. 18878–87, doi:<a href="https://doi.org/10.1074/jbc.M010898200">10.1074/jbc.M010898200</a>.
  short: M.K. Sixt, R. Hallmann, O. Wendler, K. Scharffetter Kochanek, L. Sorokin,
    Journal of Biological Chemistry 276 (2001) 18878–18887.
date_created: 2018-12-11T12:05:56Z
date_published: 2001-06-01T00:00:00Z
date_updated: 2023-05-11T12:54:06Z
day: '01'
doi: 10.1074/jbc.M010898200
extern: '1'
external_id:
  pmid:
  - '11278780'
intvolume: '       276'
issue: '22'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.sciencedirect.com/science/article/pii/S0021925819670134?via%3Dihub
month: '06'
oa: 1
oa_version: Published Version
page: 18878 - 18887
pmid: 1
publication: Journal of Biological Chemistry
publication_identifier:
  issn:
  - 0021-9258
publication_status: published
publisher: American Society for Biochemistry and Molecular Biology
publist_id: '2199'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cell adhesion and migration properties of β2-integrin negative polymorphonuclear
  granulocytes on defined extracellular matrix molecules. Relevance for leukocyte
  extravasation
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 276
year: '2001'
...
---
_id: '3930'
abstract:
- lang: eng
  text: 'An active involvement of blood-brain barrier endothelial cell basement membranes
    in development of inflammatory lesions in the central nervous system (CNS) has
    not been considered to date. Here we investigated the molecular composition and
    possible function of the extracellular matrix encountered by extravasating T lymphocytes
    during experimental autoimmune encephalomyelitis (EAE). Endothelial basement membranes
    contained laminin 8 (alpha4beta1gamma1) and/or 10 (alpha5beta1gamma1) and their
    expression was influenced by proinflammatory cytokines or angiostatic agents.
    T cells emigrating into the CNS during EAE encountered two biochemically distinct
    basement membranes, the endothelial (containing laminins 8 and 10) and the parenchymal
    (containing laminins 1 and 2) basement membranes. However, inflammatory cuffs
    occurred exclusively around endothelial basement membranes containing laminin
    8, whereas in the presence of laminin 10 no infiltration was detectable. In vitro
    assays using encephalitogenic T cell lines revealed adhesion to laminins 8 and
    10, whereas binding to laminins 1 and 2 could not be induced. Downregulation of
    integrin alpha6 on cerebral endothelium at sites of T cell infiltration, plus
    a high turnover of laminin 8 at these sites, suggested two possible roles for
    laminin 8 in the endothelial basement membrane: one at the level of the endothelial
    cells resulting in reduced adhesion and, thereby, increased penetrability of the
    monolayer; and secondly at the level of the T cells providing direct signals to
    the transmigrating cells.'
acknowledgement: The authors thank Stefanie Karosi for careful and critical reading
  of the manuscript and Monika Bruckner for expert technical assistance. We are particularly
  grateful to Winfried Neuhuber for help with confocal microscopy and interpretation
  of the data. This work was supported by Deutsche Forschungsgemeinschaft grants So285/1-3
  and So285/1-4 to L.M. Sorokin.
article_processing_charge: No
article_type: original
author:
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: Britta
  full_name: Engelhardt, Britta
  last_name: Engelhardt
- first_name: Friederike
  full_name: Pausch, Friederike
  last_name: Pausch
- first_name: Rupert
  full_name: Hallmann, Rupert
  last_name: Hallmann
- first_name: Olaf
  full_name: Wendler, Olaf
  last_name: Wendler
- first_name: Lydia
  full_name: Sorokin, Lydia
  last_name: Sorokin
citation:
  ama: Sixt MK, Engelhardt B, Pausch F, Hallmann R, Wendler O, Sorokin L. Endothelial
    cell laminin isoforms, laminins 8 and 10, play decisive roles in T cell recruitment
    across the blood-brain barrier in experimental autoimmune encephalomyelitis. <i>Journal
    of Cell Biology</i>. 2001;153(5):933-946. doi:<a href="https://doi.org/10.1083/jcb.153.5.933
    ">10.1083/jcb.153.5.933 </a>
  apa: Sixt, M. K., Engelhardt, B., Pausch, F., Hallmann, R., Wendler, O., &#38; Sorokin,
    L. (2001). Endothelial cell laminin isoforms, laminins 8 and 10, play decisive
    roles in T cell recruitment across the blood-brain barrier in experimental autoimmune
    encephalomyelitis. <i>Journal of Cell Biology</i>. Rockefeller University Press.
    <a href="https://doi.org/10.1083/jcb.153.5.933 ">https://doi.org/10.1083/jcb.153.5.933
    </a>
  chicago: Sixt, Michael K, Britta Engelhardt, Friederike Pausch, Rupert Hallmann,
    Olaf Wendler, and Lydia Sorokin. “Endothelial Cell Laminin Isoforms, Laminins
    8 and 10, Play Decisive Roles in T Cell Recruitment across the Blood-Brain Barrier
    in Experimental Autoimmune Encephalomyelitis.” <i>Journal of Cell Biology</i>.
    Rockefeller University Press, 2001. <a href="https://doi.org/10.1083/jcb.153.5.933
    ">https://doi.org/10.1083/jcb.153.5.933 </a>.
  ieee: M. K. Sixt, B. Engelhardt, F. Pausch, R. Hallmann, O. Wendler, and L. Sorokin,
    “Endothelial cell laminin isoforms, laminins 8 and 10, play decisive roles in
    T cell recruitment across the blood-brain barrier in experimental autoimmune encephalomyelitis,”
    <i>Journal of Cell Biology</i>, vol. 153, no. 5. Rockefeller University Press,
    pp. 933–946, 2001.
  ista: Sixt MK, Engelhardt B, Pausch F, Hallmann R, Wendler O, Sorokin L. 2001. Endothelial
    cell laminin isoforms, laminins 8 and 10, play decisive roles in T cell recruitment
    across the blood-brain barrier in experimental autoimmune encephalomyelitis. Journal
    of Cell Biology. 153(5), 933–946.
  mla: Sixt, Michael K., et al. “Endothelial Cell Laminin Isoforms, Laminins 8 and
    10, Play Decisive Roles in T Cell Recruitment across the Blood-Brain Barrier in
    Experimental Autoimmune Encephalomyelitis.” <i>Journal of Cell Biology</i>, vol.
    153, no. 5, Rockefeller University Press, 2001, pp. 933–46, doi:<a href="https://doi.org/10.1083/jcb.153.5.933
    ">10.1083/jcb.153.5.933 </a>.
  short: M.K. Sixt, B. Engelhardt, F. Pausch, R. Hallmann, O. Wendler, L. Sorokin,
    Journal of Cell Biology 153 (2001) 933–946.
date_created: 2018-12-11T12:05:57Z
date_published: 2001-05-21T00:00:00Z
date_updated: 2023-05-11T12:19:36Z
day: '21'
doi: '10.1083/jcb.153.5.933 '
extern: '1'
external_id:
  pmid:
  - '11381080'
intvolume: '       153'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2174323/
month: '05'
oa: 1
oa_version: Published Version
page: 933 - 946
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
publist_id: '2198'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Endothelial cell laminin isoforms, laminins 8 and 10, play decisive roles in
  T cell recruitment across the blood-brain barrier in experimental autoimmune encephalomyelitis
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 153
year: '2001'
...
---
_id: '4001'
abstract:
- lang: eng
  text: 'The construction of shape spaces is studied from a mathematical and a computational
    viewpoint. A program is outlined reducing the problem to four tasks: the representation
    of geometry, the canonical deformation of geometry, the measuring of distance
    in shape space, and the selection of base shapes. The technical part of this paper
    focuses on the second task: the specification of a deformation mixing two or more
    shapes in continuously changing proportions. (C) 2001 Elsevier Science B.V All
    rights reserved.'
acknowledgement: National Science Foundation under grants CCR-96-19542 and CCR-97-12088,
  and by the Army Research Office under grant DAAG55-98-1-0177.
article_processing_charge: No
article_type: original
author:
- first_name: Ho
  full_name: Cheng, Ho
  last_name: Cheng
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Ping
  full_name: Fu, Ping
  last_name: Fu
citation:
  ama: 'Cheng H, Edelsbrunner H, Fu P. Shape space from deformation. <i>Computational
    Geometry: Theory and Applications</i>. 2001;19(2-3):191-204. doi:<a href="https://doi.org/10.1016/S0925-7721(01)00021-9">10.1016/S0925-7721(01)00021-9</a>'
  apa: 'Cheng, H., Edelsbrunner, H., &#38; Fu, P. (2001). Shape space from deformation.
    <i>Computational Geometry: Theory and Applications</i>. Elsevier. <a href="https://doi.org/10.1016/S0925-7721(01)00021-9">https://doi.org/10.1016/S0925-7721(01)00021-9</a>'
  chicago: 'Cheng, Ho, Herbert Edelsbrunner, and Ping Fu. “Shape Space from Deformation.”
    <i>Computational Geometry: Theory and Applications</i>. Elsevier, 2001. <a href="https://doi.org/10.1016/S0925-7721(01)00021-9">https://doi.org/10.1016/S0925-7721(01)00021-9</a>.'
  ieee: 'H. Cheng, H. Edelsbrunner, and P. Fu, “Shape space from deformation,” <i>Computational
    Geometry: Theory and Applications</i>, vol. 19, no. 2–3. Elsevier, pp. 191–204,
    2001.'
  ista: 'Cheng H, Edelsbrunner H, Fu P. 2001. Shape space from deformation. Computational
    Geometry: Theory and Applications. 19(2–3), 191–204.'
  mla: 'Cheng, Ho, et al. “Shape Space from Deformation.” <i>Computational Geometry:
    Theory and Applications</i>, vol. 19, no. 2–3, Elsevier, 2001, pp. 191–204, doi:<a
    href="https://doi.org/10.1016/S0925-7721(01)00021-9">10.1016/S0925-7721(01)00021-9</a>.'
  short: 'H. Cheng, H. Edelsbrunner, P. Fu, Computational Geometry: Theory and Applications
    19 (2001) 191–204.'
date_created: 2018-12-11T12:06:22Z
date_published: 2001-07-01T00:00:00Z
date_updated: 2023-05-10T12:57:14Z
day: '01'
doi: 10.1016/S0925-7721(01)00021-9
extern: '1'
intvolume: '        19'
issue: 2-3
language:
- iso: eng
month: '07'
oa_version: None
page: 191 - 204
publication: 'Computational Geometry: Theory and Applications'
publication_identifier:
  issn:
  - 0925-7721
publication_status: published
publisher: Elsevier
publist_id: '2123'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Shape space from deformation
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 19
year: '2001'
...
---
_id: '4002'
abstract:
- lang: eng
  text: Shape deformation refers to the continuous change of one geometric object
    to another. We develop a software tool for planning, analyzing and visualizing
    deformations between two shapes in R-2. The deformation is generated automatically
    without any user intervention or specification of feature correspondences. A unique
    property of the tool is the explicit availability of a two-dimensional shape space,
    which can be used for designing the deformation either automatically by following
    constraints and objectives or manually by drawing deformation paths.
acknowledgement: NSF under grants CCR-96-19542 and CCR-97-12088.
article_processing_charge: No
article_type: original
author:
- first_name: Siu
  full_name: Cheng, Siu
  last_name: Cheng
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Ping
  full_name: Fu, Ping
  last_name: Fu
- first_name: Ka
  full_name: Lam, Ka
  last_name: Lam
citation:
  ama: 'Cheng S, Edelsbrunner H, Fu P, Lam K. Design and analysis of planar shape
    deformation. <i>Computational Geometry: Theory and Applications</i>. 2001;19(2-3):205-218.
    doi:<a href="https://doi.org/10.1016/S0925-7721(01)00020-7">10.1016/S0925-7721(01)00020-7</a>'
  apa: 'Cheng, S., Edelsbrunner, H., Fu, P., &#38; Lam, K. (2001). Design and analysis
    of planar shape deformation. <i>Computational Geometry: Theory and Applications</i>.
    Elsevier. <a href="https://doi.org/10.1016/S0925-7721(01)00020-7">https://doi.org/10.1016/S0925-7721(01)00020-7</a>'
  chicago: 'Cheng, Siu, Herbert Edelsbrunner, Ping Fu, and Ka Lam. “Design and Analysis
    of Planar Shape Deformation.” <i>Computational Geometry: Theory and Applications</i>.
    Elsevier, 2001. <a href="https://doi.org/10.1016/S0925-7721(01)00020-7">https://doi.org/10.1016/S0925-7721(01)00020-7</a>.'
  ieee: 'S. Cheng, H. Edelsbrunner, P. Fu, and K. Lam, “Design and analysis of planar
    shape deformation,” <i>Computational Geometry: Theory and Applications</i>, vol.
    19, no. 2–3. Elsevier, pp. 205–218, 2001.'
  ista: 'Cheng S, Edelsbrunner H, Fu P, Lam K. 2001. Design and analysis of planar
    shape deformation. Computational Geometry: Theory and Applications. 19(2–3), 205–218.'
  mla: 'Cheng, Siu, et al. “Design and Analysis of Planar Shape Deformation.” <i>Computational
    Geometry: Theory and Applications</i>, vol. 19, no. 2–3, Elsevier, 2001, pp. 205–18,
    doi:<a href="https://doi.org/10.1016/S0925-7721(01)00020-7">10.1016/S0925-7721(01)00020-7</a>.'
  short: 'S. Cheng, H. Edelsbrunner, P. Fu, K. Lam, Computational Geometry: Theory
    and Applications 19 (2001) 205–218.'
date_created: 2018-12-11T12:06:22Z
date_published: 2001-07-01T00:00:00Z
date_updated: 2023-05-10T14:21:31Z
day: '01'
doi: 10.1016/S0925-7721(01)00020-7
extern: '1'
intvolume: '        19'
issue: 2-3
language:
- iso: eng
month: '07'
oa_version: None
page: 205 - 218
publication: 'Computational Geometry: Theory and Applications'
publication_identifier:
  issn:
  - 0925-7721
publication_status: published
publisher: Elsevier
publist_id: '2124'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Design and analysis of planar shape deformation
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 19
year: '2001'
...
---
_id: '4005'
abstract:
- lang: eng
  text: This paper describes an algorithm for maintaining an approximating triangulation
    of a deforming surface in R-3. The triangulation adapts dynamically to changing
    shape, curvature, and topology of the surface.
article_processing_charge: No
author:
- first_name: Ho
  full_name: Cheng, Ho
  last_name: Cheng
- first_name: Tamal
  full_name: Dey, Tamal
  last_name: Dey
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: John
  full_name: Sullivan, John
  last_name: Sullivan
citation:
  ama: 'Cheng H, Dey T, Edelsbrunner H, Sullivan J. Dynamic skin triangulation. In:
    <i>Proceedings of the 12th Annual ACM-SIAM Symposium on Discrete Algorithms</i>.
    SIAM; 2001:47-56.'
  apa: 'Cheng, H., Dey, T., Edelsbrunner, H., &#38; Sullivan, J. (2001). Dynamic skin
    triangulation. In <i>Proceedings of the 12th annual ACM-SIAM symposium on Discrete
    algorithms</i> (pp. 47–56). Washington, DC, USA : SIAM.'
  chicago: Cheng, Ho, Tamal Dey, Herbert Edelsbrunner, and John Sullivan. “Dynamic
    Skin Triangulation.” In <i>Proceedings of the 12th Annual ACM-SIAM Symposium on
    Discrete Algorithms</i>, 47–56. SIAM, 2001.
  ieee: H. Cheng, T. Dey, H. Edelsbrunner, and J. Sullivan, “Dynamic skin triangulation,”
    in <i>Proceedings of the 12th annual ACM-SIAM symposium on Discrete algorithms</i>,
    Washington, DC, USA , 2001, pp. 47–56.
  ista: 'Cheng H, Dey T, Edelsbrunner H, Sullivan J. 2001. Dynamic skin triangulation.
    Proceedings of the 12th annual ACM-SIAM symposium on Discrete algorithms. SODA:
    Symposium on Discrete Algorithms, 47–56.'
  mla: Cheng, Ho, et al. “Dynamic Skin Triangulation.” <i>Proceedings of the 12th
    Annual ACM-SIAM Symposium on Discrete Algorithms</i>, SIAM, 2001, pp. 47–56.
  short: H. Cheng, T. Dey, H. Edelsbrunner, J. Sullivan, in:, Proceedings of the 12th
    Annual ACM-SIAM Symposium on Discrete Algorithms, SIAM, 2001, pp. 47–56.
conference:
  end_date: 2001-01-09
  location: 'Washington, DC, USA '
  name: 'SODA: Symposium on Discrete Algorithms'
  start_date: 2001-01-07
date_created: 2018-12-11T12:06:23Z
date_published: 2001-01-09T00:00:00Z
date_updated: 2023-05-10T12:35:44Z
day: '09'
extern: '1'
language:
- iso: eng
main_file_link:
- url: https://dl.acm.org/doi/10.5555/365411.365418
month: '01'
oa_version: None
page: 47 - 56
publication: Proceedings of the 12th annual ACM-SIAM symposium on Discrete algorithms
publication_identifier:
  isbn:
  - '9780898714906'
publication_status: published
publisher: SIAM
publist_id: '2120'
quality_controlled: '1'
status: public
title: Dynamic skin triangulation
type: conference
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
year: '2001'
...
---
_id: '4006'
abstract:
- lang: eng
  text: The 180 models collected in this paper are produced by sampling and wrapping
    point sets on tubes. The surfaces are represented as triangulated 2-manifolds
    and available as st1-files from the author's web site at www.cs.duke.edu/similar
    toedels. Each tube is obtained by thickening a circle or a smooth torus knot,
    and for some we use the degrees of freedom in the thickening process to encode
    meaningful information, such as curvature or torsion.
article_processing_charge: No
article_type: original
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: Edelsbrunner H. 180 wrapped tubes. <i>Journal of Universal Computer Science</i>.
    2001;7(5):379-399. doi:<a href="https://doi.org/10.3217/jucs-007-05-0379">10.3217/jucs-007-05-0379</a>
  apa: Edelsbrunner, H. (2001). 180 wrapped tubes. <i>Journal of Universal Computer
    Science</i>. Springer. <a href="https://doi.org/10.3217/jucs-007-05-0379">https://doi.org/10.3217/jucs-007-05-0379</a>
  chicago: Edelsbrunner, Herbert. “180 Wrapped Tubes.” <i>Journal of Universal Computer
    Science</i>. Springer, 2001. <a href="https://doi.org/10.3217/jucs-007-05-0379">https://doi.org/10.3217/jucs-007-05-0379</a>.
  ieee: H. Edelsbrunner, “180 wrapped tubes,” <i>Journal of Universal Computer Science</i>,
    vol. 7, no. 5. Springer, pp. 379–399, 2001.
  ista: Edelsbrunner H. 2001. 180 wrapped tubes. Journal of Universal Computer Science.
    7(5), 379–399.
  mla: Edelsbrunner, Herbert. “180 Wrapped Tubes.” <i>Journal of Universal Computer
    Science</i>, vol. 7, no. 5, Springer, 2001, pp. 379–99, doi:<a href="https://doi.org/10.3217/jucs-007-05-0379">10.3217/jucs-007-05-0379</a>.
  short: H. Edelsbrunner, Journal of Universal Computer Science 7 (2001) 379–399.
date_created: 2018-12-11T12:06:24Z
date_published: 2001-05-28T00:00:00Z
date_updated: 2023-05-10T12:39:54Z
day: '28'
doi: 10.3217/jucs-007-05-0379
extern: '1'
intvolume: '         7'
issue: '5'
language:
- iso: eng
month: '05'
oa_version: None
page: 379 - 399
publication: Journal of Universal Computer Science
publication_identifier:
  issn:
  - 0948-695X
publication_status: published
publisher: Springer
publist_id: '2121'
quality_controlled: '1'
status: public
title: 180 wrapped tubes
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 7
year: '2001'
...
---
_id: '4007'
abstract:
- lang: eng
  text: 'This paper describes an algorithm for maintaining an approximating triangulation
    of a deforming surface in R 3 . The surface is the envelope of an infinite family
    of spheres defined and controlled by a finite collection of weighted points. The
    triangulation adapts dynamically to changing shape, curvature, and topology of
    the surface. '
acknowledgement: NSF under grant DMS- 98-73945, ARO under grant DAAG55-98-1-0177,
  NSF under grants CCR-96- 19542 and CCR-97-12088.
article_processing_charge: No
article_type: original
author:
- first_name: Ho
  full_name: Cheng, Ho
  last_name: Cheng
- first_name: Tamal
  full_name: Dey, Tamal
  last_name: Dey
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: John
  full_name: Sullivan, John
  last_name: Sullivan
citation:
  ama: Cheng H, Dey T, Edelsbrunner H, Sullivan J. Dynamic skin triangulation. <i>Discrete
    &#38; Computational Geometry</i>. 2001;25(4):525-568. doi:<a href="https://doi.org/10.1007/s00454-001-0007-1">10.1007/s00454-001-0007-1</a>
  apa: Cheng, H., Dey, T., Edelsbrunner, H., &#38; Sullivan, J. (2001). Dynamic skin
    triangulation. <i>Discrete &#38; Computational Geometry</i>. Springer. <a href="https://doi.org/10.1007/s00454-001-0007-1">https://doi.org/10.1007/s00454-001-0007-1</a>
  chicago: Cheng, Ho, Tamal Dey, Herbert Edelsbrunner, and John Sullivan. “Dynamic
    Skin Triangulation.” <i>Discrete &#38; Computational Geometry</i>. Springer, 2001.
    <a href="https://doi.org/10.1007/s00454-001-0007-1">https://doi.org/10.1007/s00454-001-0007-1</a>.
  ieee: H. Cheng, T. Dey, H. Edelsbrunner, and J. Sullivan, “Dynamic skin triangulation,”
    <i>Discrete &#38; Computational Geometry</i>, vol. 25, no. 4. Springer, pp. 525–568,
    2001.
  ista: Cheng H, Dey T, Edelsbrunner H, Sullivan J. 2001. Dynamic skin triangulation.
    Discrete &#38; Computational Geometry. 25(4), 525–568.
  mla: Cheng, Ho, et al. “Dynamic Skin Triangulation.” <i>Discrete &#38; Computational
    Geometry</i>, vol. 25, no. 4, Springer, 2001, pp. 525–68, doi:<a href="https://doi.org/10.1007/s00454-001-0007-1">10.1007/s00454-001-0007-1</a>.
  short: H. Cheng, T. Dey, H. Edelsbrunner, J. Sullivan, Discrete &#38; Computational
    Geometry 25 (2001) 525–568.
date_created: 2018-12-11T12:06:24Z
date_published: 2001-04-04T00:00:00Z
date_updated: 2023-05-10T12:45:59Z
day: '04'
doi: 10.1007/s00454-001-0007-1
extern: '1'
intvolume: '        25'
issue: '4'
language:
- iso: eng
month: '04'
oa_version: None
page: 525 - 568
publication: Discrete & Computational Geometry
publication_identifier:
  issn:
  - 0179-5376
publication_status: published
publisher: Springer
publist_id: '2122'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dynamic skin triangulation
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 25
year: '2001'
...
