---
_id: '2360'
abstract:
- lang: eng
text: An optical lattice model developed that is similar to the Bose-Hubbard model
to describe the transition between Bose-Einstein condensation (BEC) and a Mott
insulator state was analyzed. It was found that the system was a hard core lattice
gas at half of the maximum density and the optical lattice was modeled by a periodic
potential of strength λ. It was also observed that the interparticle interaction
was essential for this transition that occurred even in the ground state. The
results show that all the essential features could be proved rigorously such as
the existence of BEC for small λ and its suppression for a large λ.
author:
- first_name: Michael
full_name: Aizenman, Michael
last_name: Aizenman
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Jan
full_name: Solovej, Jan P
last_name: Solovej
- first_name: Jakob
full_name: Yngvason, Jakob
last_name: Yngvason
citation:
ama: Aizenman M, Lieb É, Seiringer R, Solovej J, Yngvason J. Bose-Einstein quantum
phase transition in an optical lattice model. Physical Review A - Atomic, Molecular,
and Optical Physics. 2004;70(2):023612-1-0236121-2. doi:10.1103/PhysRevA.70.023612
apa: Aizenman, M., Lieb, É., Seiringer, R., Solovej, J., & Yngvason, J. (2004).
Bose-Einstein quantum phase transition in an optical lattice model. Physical
Review A - Atomic, Molecular, and Optical Physics. American Physical Society.
https://doi.org/10.1103/PhysRevA.70.023612
chicago: Aizenman, Michael, Élliott Lieb, Robert Seiringer, Jan Solovej, and Jakob
Yngvason. “Bose-Einstein Quantum Phase Transition in an Optical Lattice Model.”
Physical Review A - Atomic, Molecular, and Optical Physics. American Physical
Society, 2004. https://doi.org/10.1103/PhysRevA.70.023612.
ieee: M. Aizenman, É. Lieb, R. Seiringer, J. Solovej, and J. Yngvason, “Bose-Einstein
quantum phase transition in an optical lattice model,” Physical Review A -
Atomic, Molecular, and Optical Physics, vol. 70, no. 2. American Physical
Society, pp. 023612-1-0236121-2, 2004.
ista: Aizenman M, Lieb É, Seiringer R, Solovej J, Yngvason J. 2004. Bose-Einstein
quantum phase transition in an optical lattice model. Physical Review A - Atomic,
Molecular, and Optical Physics. 70(2), 023612-1-0236121-2.
mla: Aizenman, Michael, et al. “Bose-Einstein Quantum Phase Transition in an Optical
Lattice Model.” Physical Review A - Atomic, Molecular, and Optical Physics,
vol. 70, no. 2, American Physical Society, 2004, pp. 023612-1-0236121-2, doi:10.1103/PhysRevA.70.023612.
short: M. Aizenman, É. Lieb, R. Seiringer, J. Solovej, J. Yngvason, Physical Review
A - Atomic, Molecular, and Optical Physics 70 (2004) 023612-1-0236121-2.
date_created: 2018-12-11T11:57:12Z
date_published: 2004-08-01T00:00:00Z
date_updated: 2021-01-12T06:57:01Z
day: '01'
doi: 10.1103/PhysRevA.70.023612
extern: 1
intvolume: ' 70'
issue: '2'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/cond-mat/0403240
month: '08'
oa: 1
page: 023612 - 1-0236121-2
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '4567'
quality_controlled: 0
status: public
title: Bose-Einstein quantum phase transition in an optical lattice model
type: journal_article
volume: 70
year: '2004'
...
---
_id: '2417'
alternative_title:
- 'Contemporary Mathematics '
author:
- first_name: László
full_name: Lovász, László
last_name: Lovász
- first_name: Katalin
full_name: Vesztergombi, Katalin
last_name: Vesztergombi
- first_name: Uli
full_name: Uli Wagner
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
- first_name: Emo
full_name: Welzl, Emo
last_name: Welzl
citation:
ama: 'Lovász L, Vesztergombi K, Wagner U, Welzl E. Convex quadrilaterals and k-sets
. In: Pach J, ed. Towards a Theory of Geometric Graphs. Vol 342. American
Mathematical Society; 2004:139-148. doi:10.1090/conm/342'
apa: Lovász, L., Vesztergombi, K., Wagner, U., & Welzl, E. (2004). Convex quadrilaterals
and k-sets . In J. Pach (Ed.), Towards a Theory of Geometric Graphs (Vol.
342, pp. 139–148). American Mathematical Society. https://doi.org/10.1090/conm/342
chicago: Lovász, László, Katalin Vesztergombi, Uli Wagner, and Emo Welzl. “Convex
Quadrilaterals and K-Sets .” In Towards a Theory of Geometric Graphs, edited
by János Pach, 342:139–48. American Mathematical Society, 2004. https://doi.org/10.1090/conm/342.
ieee: L. Lovász, K. Vesztergombi, U. Wagner, and E. Welzl, “Convex quadrilaterals
and k-sets ,” in Towards a Theory of Geometric Graphs, vol. 342, J. Pach,
Ed. American Mathematical Society, 2004, pp. 139–148.
ista: 'Lovász L, Vesztergombi K, Wagner U, Welzl E. 2004.Convex quadrilaterals and
k-sets . In: Towards a Theory of Geometric Graphs. Contemporary Mathematics ,
vol. 342, 139–148.'
mla: Lovász, László, et al. “Convex Quadrilaterals and K-Sets .” Towards a Theory
of Geometric Graphs, edited by János Pach, vol. 342, American Mathematical
Society, 2004, pp. 139–48, doi:10.1090/conm/342.
short: L. Lovász, K. Vesztergombi, U. Wagner, E. Welzl, in:, J. Pach (Ed.), Towards
a Theory of Geometric Graphs, American Mathematical Society, 2004, pp. 139–148.
date_created: 2018-12-11T11:57:32Z
date_published: 2004-01-01T00:00:00Z
date_updated: 2021-01-12T06:57:21Z
day: '01'
doi: 10.1090/conm/342
editor:
- first_name: János
full_name: Pach, János
last_name: Pach
extern: 1
intvolume: ' 342'
month: '01'
page: 139 - 148
publication: Towards a Theory of Geometric Graphs
publication_status: published
publisher: American Mathematical Society
publist_id: '4508'
quality_controlled: 0
status: public
title: 'Convex quadrilaterals and k-sets '
type: book_chapter
volume: 342
year: '2004'
...
---
_id: '2425'
abstract:
- lang: eng
text: A finite set N ⊂ Rd is a weak ε-net for an n-point set X ⊂ Rd (with respect
to convex sets) if N intersects every convex set K with |K ∩ X| ≥ εn. We give
an alternative, and arguably simpler, proof of the fact, first shown by Chazelle
et al., that every point set X in Rd admits a weak ε-net of cardinality O(ε-dpolylog(1/ε)).
Moreover, for a number of special point sets (e.g., for points on the moment curve),
our method gives substantially better bounds. The construction yields an algorithm
to construct such weak ε-nets in time O(n ln(1/ε)).
author:
- first_name: Jiří
full_name: Matoušek, Jiří
last_name: Matoušek
- first_name: Uli
full_name: Uli Wagner
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: Matoušek J, Wagner U. New constructions of weak ε-nets. Discrete & Computational
Geometry. 2004;32(2):195-206. doi:10.1007/s00454-004-1116-4
apa: Matoušek, J., & Wagner, U. (2004). New constructions of weak ε-nets. Discrete
& Computational Geometry. Springer. https://doi.org/10.1007/s00454-004-1116-4
chicago: Matoušek, Jiří, and Uli Wagner. “New Constructions of Weak ε-Nets.” Discrete
& Computational Geometry. Springer, 2004. https://doi.org/10.1007/s00454-004-1116-4.
ieee: J. Matoušek and U. Wagner, “New constructions of weak ε-nets,” Discrete
& Computational Geometry, vol. 32, no. 2. Springer, pp. 195–206, 2004.
ista: Matoušek J, Wagner U. 2004. New constructions of weak ε-nets. Discrete &
Computational Geometry. 32(2), 195–206.
mla: Matoušek, Jiří, and Uli Wagner. “New Constructions of Weak ε-Nets.” Discrete
& Computational Geometry, vol. 32, no. 2, Springer, 2004, pp. 195–206,
doi:10.1007/s00454-004-1116-4.
short: J. Matoušek, U. Wagner, Discrete & Computational Geometry 32 (2004) 195–206.
date_created: 2018-12-11T11:57:35Z
date_published: 2004-07-01T00:00:00Z
date_updated: 2021-01-12T06:57:24Z
day: '01'
doi: 10.1007/s00454-004-1116-4
extern: 1
intvolume: ' 32'
issue: '2'
month: '07'
page: 195 - 206
publication: Discrete & Computational Geometry
publication_status: published
publisher: Springer
publist_id: '4500'
quality_controlled: 0
status: public
title: New constructions of weak ε-nets
type: journal_article
volume: 32
year: '2004'
...
---
_id: '2426'
abstract:
- lang: eng
text: We introduce the adaptive neighborhood graph as a data structure for modeling
a smooth manifold M embedded in some Euclidean space ℝ d. We assume that M is
known to us only through a finite sample P ⊂ M, as is often the case in applications.
The adaptive neighborhood graph is a geometric graph on P. Its complexity is at
most min{2O(k)n, n2}, where n = P and k = dim M, as opposed to the n[d/2] complexity
of the Delaunay triangulation, which is often used to model manifolds. We prove
that we can correctly infer the connected components and the dimension of M from
the adaptive neighborhood graph provided a certain standard sampling condition
is fulfilled. The running time of the dimension detection algorithm is d20(k7
log k) for each connected component of M. If the dimension is considered constant,
this is a constant-time operation, and the adaptive neighborhood graph is of linear
size. Moreover, the exponential dependence of the constants is only on the intrinsic
dimension k, not on the ambient dimension d. This is of particular interest if
the co-dimension is high, i.e., if k is much smaller than d, as is the case in
many applications. The adaptive neighborhood graph also allows us to approximate
the geodesic distances between the points in P.
author:
- first_name: Joachim
full_name: Giesen, Joachim
last_name: Giesen
- first_name: Uli
full_name: Uli Wagner
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: Giesen J, Wagner U. Shape dimension and intrinsic metric from samples of manifolds.
Discrete & Computational Geometry. 2004;32(2):245-267. doi:10.1007/s00454-004-1120-8
apa: Giesen, J., & Wagner, U. (2004). Shape dimension and intrinsic metric from
samples of manifolds. Discrete & Computational Geometry. Springer.
https://doi.org/10.1007/s00454-004-1120-8
chicago: Giesen, Joachim, and Uli Wagner. “Shape Dimension and Intrinsic Metric
from Samples of Manifolds.” Discrete & Computational Geometry. Springer,
2004. https://doi.org/10.1007/s00454-004-1120-8.
ieee: J. Giesen and U. Wagner, “Shape dimension and intrinsic metric from samples
of manifolds,” Discrete & Computational Geometry, vol. 32, no. 2. Springer,
pp. 245–267, 2004.
ista: Giesen J, Wagner U. 2004. Shape dimension and intrinsic metric from samples
of manifolds. Discrete & Computational Geometry. 32(2), 245–267.
mla: Giesen, Joachim, and Uli Wagner. “Shape Dimension and Intrinsic Metric from
Samples of Manifolds.” Discrete & Computational Geometry, vol. 32,
no. 2, Springer, 2004, pp. 245–67, doi:10.1007/s00454-004-1120-8.
short: J. Giesen, U. Wagner, Discrete & Computational Geometry 32 (2004) 245–267.
date_created: 2018-12-11T11:57:35Z
date_published: 2004-09-01T00:00:00Z
date_updated: 2021-01-12T06:57:25Z
day: '01'
doi: 10.1007/s00454-004-1120-8
extern: 1
intvolume: ' 32'
issue: '2'
month: '09'
page: 245 - 267
publication: Discrete & Computational Geometry
publication_status: published
publisher: Springer
publist_id: '4499'
quality_controlled: 0
status: public
title: Shape dimension and intrinsic metric from samples of manifolds
type: journal_article
volume: 32
year: '2004'
...
---
_id: '7333'
abstract:
- lang: eng
text: The analysis of the complete H2/air polymer electrolyte fuel cell system shows
that process air humidification is one of the biggest obstacles for a high performance
portable system in the kW range. Therefore, a new concept, with passive process
air humidification integrated into the stack, has been developed. Humidification
in each cell makes the process independent from the number of cells and the operation
mode, thus making the concept fully scalable. Without external humidification
the system is simpler, smaller, and cheaper. The humidification of the process
air is achieved by transfer of product water from the exhaust air, through part
of the membrane, to the dry intake air. Tests have shown that cells using the
concept of internal humidification and operated with dry air at 70 ° have almost
the same performance as when operated with external humidification. A 42‐cell
stack with this internal humidification concept was built and integrated into
a portable 1 kW power generator system.
article_processing_charge: No
article_type: original
author:
- first_name: M.
full_name: Santis, M.
last_name: Santis
- first_name: D.
full_name: Schmid, D.
last_name: Schmid
- first_name: M.
full_name: Ruge, M.
last_name: Ruge
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: F.N.
full_name: Büchi, F.N.
last_name: Büchi
citation:
ama: Santis M, Schmid D, Ruge M, Freunberger SA, Büchi FN. Modular stack-internal
air humidification concept-verification in a 1 kW stack. Fuel Cells. 2004;4(3):214-218.
doi:10.1002/fuce.200400028
apa: Santis, M., Schmid, D., Ruge, M., Freunberger, S. A., & Büchi, F. N. (2004).
Modular stack-internal air humidification concept-verification in a 1 kW stack.
Fuel Cells. Wiley. https://doi.org/10.1002/fuce.200400028
chicago: Santis, M., D. Schmid, M. Ruge, Stefan Alexander Freunberger, and F.N.
Büchi. “Modular Stack-Internal Air Humidification Concept-Verification in a 1 KW
Stack.” Fuel Cells. Wiley, 2004. https://doi.org/10.1002/fuce.200400028.
ieee: M. Santis, D. Schmid, M. Ruge, S. A. Freunberger, and F. N. Büchi, “Modular
stack-internal air humidification concept-verification in a 1 kW stack,” Fuel
Cells, vol. 4, no. 3. Wiley, pp. 214–218, 2004.
ista: Santis M, Schmid D, Ruge M, Freunberger SA, Büchi FN. 2004. Modular stack-internal
air humidification concept-verification in a 1 kW stack. Fuel Cells. 4(3), 214–218.
mla: Santis, M., et al. “Modular Stack-Internal Air Humidification Concept-Verification
in a 1 KW Stack.” Fuel Cells, vol. 4, no. 3, Wiley, 2004, pp. 214–18, doi:10.1002/fuce.200400028.
short: M. Santis, D. Schmid, M. Ruge, S.A. Freunberger, F.N. Büchi, Fuel Cells 4
(2004) 214–218.
date_created: 2020-01-15T12:24:14Z
date_published: 2004-08-01T00:00:00Z
date_updated: 2021-01-12T08:13:08Z
day: '01'
doi: 10.1002/fuce.200400028
extern: '1'
intvolume: ' 4'
issue: '3'
language:
- iso: eng
month: '08'
oa_version: None
page: 214-218
publication: Fuel Cells
publication_identifier:
issn:
- 1615-6846
- 1615-6854
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Modular stack-internal air humidification concept-verification in a 1 kW stack
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 4
year: '2004'
...
---
_id: '7334'
abstract:
- lang: eng
text: 'Fundamental and phenomenological models for cells, stacks, and complete systems
of PEFC and SOFC are reviewed and their predictive power is assessed by comparing
model simulations against experiments. Computationally efficient models suited
for engineering design include the (1+1) dimensionality approach, which decouples
the membrane in-plane and through-plane processes, and the volume-averaged-method
(VAM) that considers only the lumped effect of pre-selected system components.
The former model was shown to capture the measured lateral current density inhomogeneities
in a PEFC and the latter was used for the optimization of commercial SOFC systems.
State Space Modeling (SSM) was used to identify the main reaction pathways in
SOFC and, in conjunction with the implementation of geometrically well-defined
electrodes, has opened a new direction for the understanding of electrochemical
reactions. Furthermore, SSM has advanced the understanding of the COpoisoning-induced
anode impedance in PEFC. Detailed numerical models such as the Lattice Boltzmann
(LB) method for transport in porous media and the full 3-D Computational Fluid
Dynamics (CFD) Navier-Stokes simulations are addressed. These models contain all
components of the relevant physics and they can improve the understanding of the
related phenomena, a necessary condition for the development of both appropriate
simplified models as well as reliable technologies. Within the LB framework, a
technique for the characterization and computer-reconstruction of the porous electrode
structure was developed using advanced pattern recognition algorithms. In CFD
modeling, 3-D simulations were used to investigate SOFC with internal methane
steam reforming and have exemplified the significance of porous and novel fractal
channel distributors for the fuel and oxidant delivery, as well as for the cooling
of PEFC. As importantly, the novel concept has been put forth of functionally
designed, fractal-shaped fuel cells, showing promise of significant performance
improvements over the conventional rectangular shaped units. Thermo-economic modeling
for the optimization of PEFC is finally addressed. '
article_processing_charge: No
article_type: original
author:
- first_name: John
full_name: Mantzaras, John
last_name: Mantzaras
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: Felix N.
full_name: Büchi, Felix N.
last_name: Büchi
- first_name: Markus
full_name: Roos, Markus
last_name: Roos
- first_name: Wilhelm
full_name: Brandstätter, Wilhelm
last_name: Brandstätter
- first_name: Michel
full_name: Prestat, Michel
last_name: Prestat
- first_name: Ludwig J.
full_name: Gauckler, Ludwig J.
last_name: Gauckler
- first_name: Bernhard
full_name: Andreaus, Bernhard
last_name: Andreaus
- first_name: Faegheh
full_name: Hajbolouri, Faegheh
last_name: Hajbolouri
- first_name: Stephan M.
full_name: Senn, Stephan M.
last_name: Senn
- first_name: Dimos
full_name: Poulikakos, Dimos
last_name: Poulikakos
- first_name: Andreas K.
full_name: Chaniotis, Andreas K.
last_name: Chaniotis
- first_name: Diego
full_name: Larrain, Diego
last_name: Larrain
- first_name: Nordahl
full_name: Autissier, Nordahl
last_name: Autissier
- first_name: François
full_name: Maréchal, François
last_name: Maréchal
citation:
ama: Mantzaras J, Freunberger SA, Büchi FN, et al. Fuel cell modeling and simulations.
CHIMIA International Journal for Chemistry. 2004;58(12):857-868. doi:10.2533/000942904777677029
apa: Mantzaras, J., Freunberger, S. A., Büchi, F. N., Roos, M., Brandstätter, W.,
Prestat, M., … Maréchal, F. (2004). Fuel cell modeling and simulations. CHIMIA
International Journal for Chemistry. Swiss Chemical Society. https://doi.org/10.2533/000942904777677029
chicago: Mantzaras, John, Stefan Alexander Freunberger, Felix N. Büchi, Markus Roos,
Wilhelm Brandstätter, Michel Prestat, Ludwig J. Gauckler, et al. “Fuel Cell Modeling
and Simulations.” CHIMIA International Journal for Chemistry. Swiss Chemical
Society, 2004. https://doi.org/10.2533/000942904777677029.
ieee: J. Mantzaras et al., “Fuel cell modeling and simulations,” CHIMIA
International Journal for Chemistry, vol. 58, no. 12. Swiss Chemical Society,
pp. 857–868, 2004.
ista: Mantzaras J, Freunberger SA, Büchi FN, Roos M, Brandstätter W, Prestat M,
Gauckler LJ, Andreaus B, Hajbolouri F, Senn SM, Poulikakos D, Chaniotis AK, Larrain
D, Autissier N, Maréchal F. 2004. Fuel cell modeling and simulations. CHIMIA International
Journal for Chemistry. 58(12), 857–868.
mla: Mantzaras, John, et al. “Fuel Cell Modeling and Simulations.” CHIMIA International
Journal for Chemistry, vol. 58, no. 12, Swiss Chemical Society, 2004, pp.
857–68, doi:10.2533/000942904777677029.
short: J. Mantzaras, S.A. Freunberger, F.N. Büchi, M. Roos, W. Brandstätter, M.
Prestat, L.J. Gauckler, B. Andreaus, F. Hajbolouri, S.M. Senn, D. Poulikakos,
A.K. Chaniotis, D. Larrain, N. Autissier, F. Maréchal, CHIMIA International Journal
for Chemistry 58 (2004) 857–868.
date_created: 2020-01-15T12:24:23Z
date_published: 2004-12-01T00:00:00Z
date_updated: 2021-01-12T08:13:09Z
day: '01'
doi: 10.2533/000942904777677029
extern: '1'
intvolume: ' 58'
issue: '12'
language:
- iso: eng
month: '12'
oa_version: None
page: 857-868
publication: CHIMIA International Journal for Chemistry
publication_identifier:
issn:
- 0009-4293
publication_status: published
publisher: Swiss Chemical Society
quality_controlled: '1'
status: public
title: Fuel cell modeling and simulations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 58
year: '2004'
...
---
_id: '7706'
abstract:
- lang: eng
text: 'The Sir2 deacetylase modulates organismal life-span in various species. However,
the molecular mechanisms by which Sir2 increases longevity are largely unknown.
We show that in mammalian cells, the Sir2 homolog SIRT1 appears to control the
cellular response to stress by regulating the FOXO family of Forkhead transcription
factors, a family of proteins that function as sensors of the insulin signaling
pathway and as regulators of organismal longevity. SIRT1 and the FOXO transcription
factor FOXO3 formed a complex in cells in response to oxidative stress, and SIRT1
deacetylated FOXO3 in vitro and within cells. SIRT1 had a dual effect on FOXO3
function: SIRT1 increased FOXO3''s ability to induce cell cycle arrest and resistance
to oxidative stress but inhibited FOXO3''s ability to induce cell death. Thus,
one way in which members of the Sir2 family of proteins may increase organismal
longevity is by tipping FOXO-dependent responses away from apoptosis and toward
stress resistance.'
article_processing_charge: No
article_type: original
author:
- first_name: Anne
full_name: Brunet, Anne
last_name: Brunet
- first_name: Lora Beatrice Jaeger
full_name: Sweeney, Lora Beatrice Jaeger
id: 56BE8254-C4F0-11E9-8E45-0B23E6697425
last_name: Sweeney
orcid: 0000-0001-9242-5601
- first_name: 'J Fitzhugh '
full_name: 'Sturgill, J Fitzhugh '
last_name: Sturgill
- first_name: Katrin
full_name: Chua, Katrin
last_name: Chua
- first_name: Paul
full_name: Greer, Paul
last_name: Greer
- first_name: Yingxi
full_name: Lin, Yingxi
last_name: Lin
- first_name: Hien
full_name: Tran, Hien
last_name: Tran
- first_name: Sarah
full_name: Ross, Sarah
last_name: Ross
- first_name: Raul
full_name: Mostoslavsky, Raul
last_name: Mostoslavsky
- first_name: Haim
full_name: Cohen, Haim
last_name: Cohen
- first_name: Linda
full_name: Hu, Linda
last_name: Hu
- first_name: Hwei-Ling
full_name: Chen, Hwei-Ling
last_name: Chen
- first_name: Mark
full_name: Jedrychowski, Mark
last_name: Jedrychowski
- first_name: Steven
full_name: Gygi, Steven
last_name: Gygi
- first_name: David
full_name: Sinclair, David
last_name: Sinclair
- first_name: Frederick
full_name: Alt, Frederick
last_name: Alt
- first_name: Michael
full_name: Greenberg, Michael
last_name: Greenberg
citation:
ama: Brunet A, Sweeney LB, Sturgill JF, et al. Stress-dependent regulation of FOXO
transcription factors by the SIRT1 deacetylase. Science. 2004;303(5666):2011-2015.
doi:10.1126/science.1094637
apa: Brunet, A., Sweeney, L. B., Sturgill, J. F., Chua, K., Greer, P., Lin, Y.,
… Greenberg, M. (2004). Stress-dependent regulation of FOXO transcription factors
by the SIRT1 deacetylase. Science. American Association for the Advancement
of Science. https://doi.org/10.1126/science.1094637
chicago: Brunet, Anne, Lora B. Sweeney, J Fitzhugh Sturgill, Katrin Chua, Paul
Greer, Yingxi Lin, Hien Tran, et al. “Stress-Dependent Regulation of FOXO Transcription
Factors by the SIRT1 Deacetylase.” Science. American Association for the
Advancement of Science, 2004. https://doi.org/10.1126/science.1094637.
ieee: A. Brunet et al., “Stress-dependent regulation of FOXO transcription
factors by the SIRT1 deacetylase,” Science, vol. 303, no. 5666. American
Association for the Advancement of Science, pp. 2011–2015, 2004.
ista: Brunet A, Sweeney LB, Sturgill JF, Chua K, Greer P, Lin Y, Tran H, Ross S,
Mostoslavsky R, Cohen H, Hu L, Chen H-L, Jedrychowski M, Gygi S, Sinclair D, Alt
F, Greenberg M. 2004. Stress-dependent regulation of FOXO transcription factors
by the SIRT1 deacetylase. Science. 303(5666), 2011–2015.
mla: Brunet, Anne, et al. “Stress-Dependent Regulation of FOXO Transcription Factors
by the SIRT1 Deacetylase.” Science, vol. 303, no. 5666, American Association
for the Advancement of Science, 2004, pp. 2011–15, doi:10.1126/science.1094637.
short: A. Brunet, L.B. Sweeney, J.F. Sturgill, K. Chua, P. Greer, Y. Lin, H. Tran,
S. Ross, R. Mostoslavsky, H. Cohen, L. Hu, H.-L. Chen, M. Jedrychowski, S. Gygi,
D. Sinclair, F. Alt, M. Greenberg, Science 303 (2004) 2011–2015.
date_created: 2020-04-30T10:37:41Z
date_published: 2004-03-26T00:00:00Z
date_updated: 2024-01-31T10:14:17Z
day: '26'
doi: 10.1126/science.1094637
extern: '1'
intvolume: ' 303'
issue: '5666'
language:
- iso: eng
month: '03'
oa_version: None
page: 2011-2015
publication: Science
publication_identifier:
issn:
- 0036-8075
- 1095-9203
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
status: public
title: Stress-dependent regulation of FOXO transcription factors by the SIRT1 deacetylase
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 303
year: '2004'
...
---
_id: '4577'
abstract:
- lang: eng
text: While model checking has been successful in uncovering subtle bugs in code,
its adoption in software engineering practice has been hampered by the absence
of a simple interface to the programmer in an integrated development environment.
We describe an integration of the software model checker BLAST into the Eclipse
development environment. We provide a verification interface for practical solutions
for some typical program analysis problems - assertion checking, reachability
analysis, dead code analysis, and test generation - directly on the source code.
The analysis is completely automatic, and assumes no knowledge of model checking
or formal notation. Moreover, the interface supports incremental program verification
to support incremental design and evolution of code.
acknowledgement: This research was supported in part by the NSF grants CCR-0085949,
CCR-0234690, and ITR-0326577.
author:
- first_name: Dirk
full_name: Beyer, Dirk
last_name: Beyer
- first_name: Thomas A
full_name: Thomas Henzinger
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Ranjit
full_name: Jhala, Ranjit
last_name: Jhala
- first_name: Ritankar
full_name: Majumdar, Ritankar S
last_name: Majumdar
citation:
ama: 'Beyer D, Henzinger TA, Jhala R, Majumdar R. An eclipse plug-in for model checking.
In: IEEE; 2004:251-255. doi:10.1109/WPC.2004.1311069 '
apa: 'Beyer, D., Henzinger, T. A., Jhala, R., & Majumdar, R. (2004). An eclipse
plug-in for model checking (pp. 251–255). Presented at the IWPC: Program Comprehension,
IEEE. https://doi.org/10.1109/WPC.2004.1311069
'
chicago: Beyer, Dirk, Thomas A Henzinger, Ranjit Jhala, and Ritankar Majumdar. “An
Eclipse Plug-in for Model Checking,” 251–55. IEEE, 2004. https://doi.org/10.1109/WPC.2004.1311069 .
ieee: 'D. Beyer, T. A. Henzinger, R. Jhala, and R. Majumdar, “An eclipse plug-in
for model checking,” presented at the IWPC: Program Comprehension, 2004, pp. 251–255.'
ista: 'Beyer D, Henzinger TA, Jhala R, Majumdar R. 2004. An eclipse plug-in for
model checking. IWPC: Program Comprehension, 251–255.'
mla: Beyer, Dirk, et al. An Eclipse Plug-in for Model Checking. IEEE, 2004,
pp. 251–55, doi:10.1109/WPC.2004.1311069
.
short: D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, in:, IEEE, 2004, pp. 251–255.
conference:
name: 'IWPC: Program Comprehension'
date_created: 2018-12-11T12:09:34Z
date_published: 2004-07-12T00:00:00Z
date_updated: 2021-01-12T07:59:50Z
day: '12'
doi: '10.1109/WPC.2004.1311069 '
extern: 1
month: '07'
page: 251 - 255
publication_status: published
publisher: IEEE
publist_id: '129'
quality_controlled: 0
status: public
title: An eclipse plug-in for model checking
type: conference
year: '2004'
...
---
_id: '4578'
abstract:
- lang: eng
text: 'BLAST is an automatic verification tool for checking temporal safety properties
of C programs. Blast is based on lazy predicate abstraction driven by interpolation-based
predicate discovery. In this paper, we present the Blast specification language.
The language specifies program properties at two levels of precision. At the lower
level, monitor automata are used to specify temporal safety properties of program
executions (traces). At the higher level, relational reachability queries over
program locations are used to combine lower-level trace properties. The two-level
specification language can be used to break down a verification task into several
independent calls of the model-checking engine. In this way, each call to the
model checker may have to analyze only part of the program, or part of the specification,
and may thus succeed in a reduction of the number of predicates needed for the
analysis. In addition, the two-level specification language provides a means for
structuring and maintaining specifications. '
acknowledgement: This research was supported in part by the NSF grants CCR-0085949,
CCR-0234690, and ITR-0326577.
alternative_title:
- LNCS
author:
- first_name: Dirk
full_name: Beyer, Dirk
last_name: Beyer
- first_name: Adam
full_name: Chlipala, Adam J
last_name: Chlipala
- first_name: Thomas A
full_name: Thomas Henzinger
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Ranjit
full_name: Jhala, Ranjit
last_name: Jhala
- first_name: Ritankar
full_name: Majumdar, Ritankar S
last_name: Majumdar
citation:
ama: 'Beyer D, Chlipala A, Henzinger TA, Jhala R, Majumdar R. The BLAST query language
for software verification. In: Vol 3148. Springer; 2004:2-18. doi:10.1007/978-3-540-27864-1_2'
apa: 'Beyer, D., Chlipala, A., Henzinger, T. A., Jhala, R., & Majumdar, R. (2004).
The BLAST query language for software verification (Vol. 3148, pp. 2–18). Presented
at the SAS: Static Analysis Symposium, Springer. https://doi.org/10.1007/978-3-540-27864-1_2'
chicago: Beyer, Dirk, Adam Chlipala, Thomas A Henzinger, Ranjit Jhala, and Ritankar
Majumdar. “The BLAST Query Language for Software Verification,” 3148:2–18. Springer,
2004. https://doi.org/10.1007/978-3-540-27864-1_2.
ieee: 'D. Beyer, A. Chlipala, T. A. Henzinger, R. Jhala, and R. Majumdar, “The BLAST
query language for software verification,” presented at the SAS: Static Analysis
Symposium, 2004, vol. 3148, pp. 2–18.'
ista: 'Beyer D, Chlipala A, Henzinger TA, Jhala R, Majumdar R. 2004. The BLAST query
language for software verification. SAS: Static Analysis Symposium, LNCS, vol.
3148, 2–18.'
mla: Beyer, Dirk, et al. The BLAST Query Language for Software Verification.
Vol. 3148, Springer, 2004, pp. 2–18, doi:10.1007/978-3-540-27864-1_2.
short: D. Beyer, A. Chlipala, T.A. Henzinger, R. Jhala, R. Majumdar, in:, Springer,
2004, pp. 2–18.
conference:
name: 'SAS: Static Analysis Symposium'
date_created: 2018-12-11T12:09:34Z
date_published: 2004-08-17T00:00:00Z
date_updated: 2021-01-12T07:59:50Z
day: '17'
doi: 10.1007/978-3-540-27864-1_2
extern: 1
intvolume: ' 3148'
month: '08'
page: 2 - 18
publication_status: published
publisher: Springer
publist_id: '130'
quality_controlled: 0
status: public
title: The BLAST query language for software verification
type: conference
volume: 3148
year: '2004'
...
---
_id: '4581'
abstract:
- lang: eng
text: We have extended the software model checker BLAST to automatically generate
test suites that guarantee full coverage with respect to a given predicate. More
precisely, given a C program and a target predicate p, BLAST determines the set
L of program locations which program execution can reach with p true, and automatically
generates a set of test vectors that exhibit the truth of p at all locations in
L. We have used BLAST to generate test suites and to detect dead code in C programs
with up to 30 K lines of code. The analysis and test vector generation is fully
automatic (no user intervention) and exact (no false positives).
author:
- first_name: Dirk
full_name: Beyer, Dirk
last_name: Beyer
- first_name: Adam
full_name: Chlipala, Adam J
last_name: Chlipala
- first_name: Thomas A
full_name: Thomas Henzinger
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Ranjit
full_name: Jhala, Ranjit
last_name: Jhala
- first_name: Ritankar
full_name: Majumdar, Ritankar S
last_name: Majumdar
citation:
ama: 'Beyer D, Chlipala A, Henzinger TA, Jhala R, Majumdar R. Generating tests from
counterexamples. In: IEEE; 2004:326-335. doi:10.1109/ICSE.2004.1317455'
apa: 'Beyer, D., Chlipala, A., Henzinger, T. A., Jhala, R., & Majumdar, R. (2004).
Generating tests from counterexamples (pp. 326–335). Presented at the ICSE: Software
Engineering, IEEE. https://doi.org/10.1109/ICSE.2004.1317455'
chicago: Beyer, Dirk, Adam Chlipala, Thomas A Henzinger, Ranjit Jhala, and Ritankar
Majumdar. “Generating Tests from Counterexamples,” 326–35. IEEE, 2004. https://doi.org/10.1109/ICSE.2004.1317455.
ieee: 'D. Beyer, A. Chlipala, T. A. Henzinger, R. Jhala, and R. Majumdar, “Generating
tests from counterexamples,” presented at the ICSE: Software Engineering, 2004,
pp. 326–335.'
ista: 'Beyer D, Chlipala A, Henzinger TA, Jhala R, Majumdar R. 2004. Generating
tests from counterexamples. ICSE: Software Engineering, 326–335.'
mla: Beyer, Dirk, et al. Generating Tests from Counterexamples. IEEE, 2004,
pp. 326–35, doi:10.1109/ICSE.2004.1317455.
short: D. Beyer, A. Chlipala, T.A. Henzinger, R. Jhala, R. Majumdar, in:, IEEE,
2004, pp. 326–335.
conference:
name: 'ICSE: Software Engineering'
date_created: 2018-12-11T12:09:35Z
date_published: 2004-07-26T00:00:00Z
date_updated: 2021-01-12T07:59:52Z
day: '26'
doi: 10.1109/ICSE.2004.1317455
extern: 1
month: '07'
page: 326 - 335
publication_status: published
publisher: IEEE
publist_id: '128'
quality_controlled: 0
status: public
title: Generating tests from counterexamples
type: conference
year: '2004'
...
---
_id: '4629'
abstract:
- lang: eng
text: 'Temporal logic is two-valued: a property is either true or false. When applied
to the analysis of stochastic systems, or systems with imprecise formal models,
temporal logic is therefore fragile: even small changes in the model can lead
to opposite truth values for a specification. We present a generalization of the
branching-time logic Ctl which achieves robustness with respect to model perturbations
by giving a quantitative interpretation to predicates and logical operators, and
by discounting the importance of events according to how late they occur. In every
state, the value of a formula is a real number in the interval [0,1], where 1
corresponds to truth and 0 to falsehood. The boolean operators and and or are
replaced by min and max, the path quantifiers ∃ and ∀ determine sup and inf over
all paths from a given state, and the temporal operators and □ specify sup and
inf over a given path; a new operator averages all values along a path. Furthermore,
all path operators are discounted by a parameter that can be chosen to give more
weight to states that are closer to the beginning of the path. We interpret the
resulting logic Dctl over transition systems, Markov chains, and Markov decision
processes. We present two semantics for Dctl: a path semantics, inspired by the
standard interpretation of state and path formulas in CTL, and a fixpoint semantics,
inspired by the μ-calculus evaluation of CTL formulas. We show that, while these
semantics coincide for CTL, they differ for Dctl, and we provide model-checking
algorithms for both semantics.'
acknowledgement: This research was supported in part by the AFOSR MURI grant F49620-00-1-0327,
the ONR grant N00014-02-1-0671, and the NSF grants CCR-0132780, CCR-9988172, CCR-0225610,
and CCR-0234690.
alternative_title:
- LNCS
author:
- first_name: Luca
full_name: de Alfaro, Luca
last_name: De Alfaro
- first_name: Marco
full_name: Faella, Marco
last_name: Faella
- first_name: Thomas A
full_name: Thomas Henzinger
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Ritankar
full_name: Majumdar, Ritankar S
last_name: Majumdar
- first_name: Mariëlle
full_name: Stoelinga, Mariëlle
last_name: Stoelinga
citation:
ama: 'De Alfaro L, Faella M, Henzinger TA, Majumdar R, Stoelinga M. Model checking
discounted temporal properties. In: Vol 2988. Springer; 2004:77-92. doi:10.1007/978-3-540-24730-2_6'
apa: 'De Alfaro, L., Faella, M., Henzinger, T. A., Majumdar, R., & Stoelinga,
M. (2004). Model checking discounted temporal properties (Vol. 2988, pp. 77–92).
Presented at the TACAS: Tools and Algorithms for the Construction and Analysis
of Systems, Springer. https://doi.org/10.1007/978-3-540-24730-2_6'
chicago: De Alfaro, Luca, Marco Faella, Thomas A Henzinger, Ritankar Majumdar, and
Mariëlle Stoelinga. “Model Checking Discounted Temporal Properties,” 2988:77–92.
Springer, 2004. https://doi.org/10.1007/978-3-540-24730-2_6.
ieee: 'L. De Alfaro, M. Faella, T. A. Henzinger, R. Majumdar, and M. Stoelinga,
“Model checking discounted temporal properties,” presented at the TACAS: Tools
and Algorithms for the Construction and Analysis of Systems, 2004, vol. 2988,
pp. 77–92.'
ista: 'De Alfaro L, Faella M, Henzinger TA, Majumdar R, Stoelinga M. 2004. Model
checking discounted temporal properties. TACAS: Tools and Algorithms for the Construction
and Analysis of Systems, LNCS, vol. 2988, 77–92.'
mla: De Alfaro, Luca, et al. Model Checking Discounted Temporal Properties.
Vol. 2988, Springer, 2004, pp. 77–92, doi:10.1007/978-3-540-24730-2_6.
short: L. De Alfaro, M. Faella, T.A. Henzinger, R. Majumdar, M. Stoelinga, in:,
Springer, 2004, pp. 77–92.
conference:
name: 'TACAS: Tools and Algorithms for the Construction and Analysis of Systems'
date_created: 2018-12-11T12:09:50Z
date_published: 2004-03-18T00:00:00Z
date_updated: 2021-01-12T08:00:38Z
day: '18'
doi: 10.1007/978-3-540-24730-2_6
extern: 1
intvolume: ' 2988'
month: '03'
page: 77 - 92
publication_status: published
publisher: Springer
publist_id: '79'
quality_controlled: 0
status: public
title: Model checking discounted temporal properties
type: conference
volume: 2988
year: '2004'
...
---
_id: '6155'
abstract:
- lang: eng
text: 'The genome of the nematode Caenorhabditis elegans encodes seven soluble guanylate
cyclases (sGCs) [1]. In mammals, sGCs function as α/β heterodimers activated by
gaseous ligands binding to a haem prosthetic group 2, 3. The principal activator
is nitric oxide, which acts through sGCs to regulate diverse cellular events.
In C. elegans the function of sGCs is mysterious: the worm genome does not appear
to encode nitric oxide synthase, and all C. elegans sGC subunits are more closely
related to mammalian β than α subunits [1]. Here, we show that two of the seven
C. elegans sGCs, GCY-35 and GCY-36, promote aggregation behavior. gcy-35 and gcy-36
are expressed in a small number of neurons. These include the body cavity neurons
AQR, PQR, and URX, which are directly exposed to the blood equivalent of C. elegans
and regulate aggregation behavior [4]. We show that GCY-35 and GCY-36 act as α-like
and β-like sGC subunits and that their function in the URX sensory neurons is
sufficient for strong nematode aggregation. Neither GCY-35 nor GCY-36 is absolutely
required for C. elegans to aggregate. Instead, these molecules may transduce one
of several pathways that induce C. elegans to aggregate or may modulate aggregation
by responding to cues in C. elegans body fluid.'
author:
- first_name: Benny H.H
full_name: Cheung, Benny H.H
last_name: Cheung
- first_name: Fausto
full_name: Arellano-Carbajal, Fausto
last_name: Arellano-Carbajal
- first_name: Irene
full_name: Rybicki, Irene
last_name: Rybicki
- first_name: Mario
full_name: de Bono, Mario
id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
last_name: de Bono
orcid: 0000-0001-8347-0443
citation:
ama: Cheung BH., Arellano-Carbajal F, Rybicki I, de Bono M. Soluble guanylate cyclases
act in neurons exposed to the body fluid to promote C. elegans aggregation behavior.
Current Biology. 2004;14(12):1105-1111. doi:10.1016/j.cub.2004.06.027
apa: Cheung, B. H. ., Arellano-Carbajal, F., Rybicki, I., & de Bono, M. (2004).
Soluble guanylate cyclases act in neurons exposed to the body fluid to promote
C. elegans aggregation behavior. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2004.06.027
chicago: Cheung, Benny H.H, Fausto Arellano-Carbajal, Irene Rybicki, and Mario de
Bono. “Soluble Guanylate Cyclases Act in Neurons Exposed to the Body Fluid to
Promote C. Elegans Aggregation Behavior.” Current Biology. Elsevier, 2004.
https://doi.org/10.1016/j.cub.2004.06.027.
ieee: B. H. . Cheung, F. Arellano-Carbajal, I. Rybicki, and M. de Bono, “Soluble
guanylate cyclases act in neurons exposed to the body fluid to promote C. elegans
aggregation behavior,” Current Biology, vol. 14, no. 12. Elsevier, pp.
1105–1111, 2004.
ista: Cheung BH., Arellano-Carbajal F, Rybicki I, de Bono M. 2004. Soluble guanylate
cyclases act in neurons exposed to the body fluid to promote C. elegans aggregation
behavior. Current Biology. 14(12), 1105–1111.
mla: Cheung, Benny H. .., et al. “Soluble Guanylate Cyclases Act in Neurons Exposed
to the Body Fluid to Promote C. Elegans Aggregation Behavior.” Current Biology,
vol. 14, no. 12, Elsevier, 2004, pp. 1105–11, doi:10.1016/j.cub.2004.06.027.
short: B.H.. Cheung, F. Arellano-Carbajal, I. Rybicki, M. de Bono, Current Biology
14 (2004) 1105–1111.
date_created: 2019-03-21T09:42:01Z
date_published: 2004-06-22T00:00:00Z
date_updated: 2021-01-12T08:06:25Z
day: '22'
doi: 10.1016/j.cub.2004.06.027
extern: '1'
external_id:
pmid:
- '15203005'
intvolume: ' 14'
issue: '12'
language:
- iso: eng
month: '06'
oa_version: None
page: 1105-1111
pmid: 1
publication: Current Biology
publication_identifier:
issn:
- 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Soluble guanylate cyclases act in neurons exposed to the body fluid to promote
C. elegans aggregation behavior
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2004'
...
---
_id: '1456'
abstract:
- lang: eng
text: We study the space of L2 harmonic forms on complete manifolds with metrics
of fibred boundary or fibred cusp type. These metrics generalize the geometric
structures at infinity of several different well-known classes of metrics, including
asymptotically locally Euclidean manifolds, the (known types of) gravitational
instantons, and also Poincaré metrics on ℚ-rank 1 ends of locally symmetric spaces
and on the complements of smooth divisors in Kähler manifolds. The answer in all
cases is given in terms of intersection cohomology of a stratified compactification
of the manifold. The L2 signature formula implied by our result is closely related
to the one proved by Dai and more generally by Vaillant and identifies Dai's τ-invariant
directly in terms of intersection cohomology of differing perversities. This work
is also closely related to a recent paper of Carron and the forthcoming paper
of Cheeger and Dai. We apply our results to a number of examples, gravitational
instantons among them, arising in predictions about L2 harmonic forms in duality
theories in string theory.
acknowledgement: |-
Hausel’s work supported by a Miller Research Fellowship at the University of California, Berkeley.
Hunsicker’s work partially supported by Stanford University.
Mazzeo’s work supported by National Science Foundation grant numbers DMS-991975 and DMS-0204730 and
by the Mathematical Sciences Research Institute.
author:
- first_name: Tamas
full_name: Tamas Hausel
id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
last_name: Hausel
- first_name: Eugénie
full_name: Hunsicker, Eugénie
last_name: Hunsicker
- first_name: Rafe
full_name: Mazzeo, Rafe R
last_name: Mazzeo
citation:
ama: Hausel T, Hunsicker E, Mazzeo R. Hodge cohomology of gravitational instantons.
Duke Mathematical Journal. 2004;122(3):485-548. doi:10.1215/S0012-7094-04-12233-X
apa: Hausel, T., Hunsicker, E., & Mazzeo, R. (2004). Hodge cohomology of gravitational
instantons. Duke Mathematical Journal. Duke University Press. https://doi.org/10.1215/S0012-7094-04-12233-X
chicago: Hausel, Tamás, Eugénie Hunsicker, and Rafe Mazzeo. “Hodge Cohomology of
Gravitational Instantons.” Duke Mathematical Journal. Duke University Press,
2004. https://doi.org/10.1215/S0012-7094-04-12233-X.
ieee: T. Hausel, E. Hunsicker, and R. Mazzeo, “Hodge cohomology of gravitational
instantons,” Duke Mathematical Journal, vol. 122, no. 3. Duke University
Press, pp. 485–548, 2004.
ista: Hausel T, Hunsicker E, Mazzeo R. 2004. Hodge cohomology of gravitational instantons.
Duke Mathematical Journal. 122(3), 485–548.
mla: Hausel, Tamás, et al. “Hodge Cohomology of Gravitational Instantons.” Duke
Mathematical Journal, vol. 122, no. 3, Duke University Press, 2004, pp. 485–548,
doi:10.1215/S0012-7094-04-12233-X.
short: T. Hausel, E. Hunsicker, R. Mazzeo, Duke Mathematical Journal 122 (2004)
485–548.
date_created: 2018-12-11T11:52:08Z
date_published: 2004-04-15T00:00:00Z
date_updated: 2021-01-12T06:50:52Z
day: '15'
doi: 10.1215/S0012-7094-04-12233-X
extern: 1
intvolume: ' 122'
issue: '3'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math/0207169
month: '04'
oa: 1
page: 485 - 548
publication: Duke Mathematical Journal
publication_status: published
publisher: Duke University Press
publist_id: '5737'
quality_controlled: 0
status: public
title: Hodge cohomology of gravitational instantons
type: journal_article
volume: 122
year: '2004'
...
---
_id: '1464'
abstract:
- lang: eng
text: "The moduli space of stable vector bundles on a Riemann surface is smooth
when the rank and degree are coprime, and is diffeomorphic to the space of unitary
connections of central constant curvature. A classic result of Newstead and Atiyah
and Bott asserts that its rational cohomology ring is generated by the universal
classes, that is, by the Kunneth components of the Chern classes of the universal
bundle.\n\nThis paper studies the larger, non-compact moduli space of Higgs bundles,
as introduced by Hitchin and Simpson, with values in the canonical bundle K. This
is diffeomorphic to the space of all connections of central constant curvature,
whether unitary or not. The main result of the paper is that, in the rank 2 case,
the rational cohomology ring of this space is again generated by universal classes.\n\nThe
spaces of Higgs bundles with values in K(n) for n > 0 turn out to be essential
to the story. Indeed, we show that their direct limit has the homotopy type of
the classifying space of the gauge group, and hence has cohomology generated by
universal classes. 2000 Mathematics Subject Classification 14H60 (primary), 14D20,
14H81, 32Q55, 58D27 (secondary). "
author:
- first_name: Tamas
full_name: Tamas Hausel
id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
last_name: Hausel
- first_name: Michael
full_name: Thaddeus, Michael
last_name: Thaddeus
citation:
ama: Hausel T, Thaddeus M. Generators for the cohomology ring of the moduli space
of rank 2 higgs bundles. Proceedings of the London Mathematical Society.
2004;88(3):632-658. doi:10.1112/S0024611503014618
apa: Hausel, T., & Thaddeus, M. (2004). Generators for the cohomology ring of
the moduli space of rank 2 higgs bundles. Proceedings of the London Mathematical
Society. Oxford University Press. https://doi.org/10.1112/S0024611503014618
chicago: Hausel, Tamás, and Michael Thaddeus. “Generators for the Cohomology Ring
of the Moduli Space of Rank 2 Higgs Bundles.” Proceedings of the London Mathematical
Society. Oxford University Press, 2004. https://doi.org/10.1112/S0024611503014618.
ieee: T. Hausel and M. Thaddeus, “Generators for the cohomology ring of the moduli
space of rank 2 higgs bundles,” Proceedings of the London Mathematical Society,
vol. 88, no. 3. Oxford University Press, pp. 632–658, 2004.
ista: Hausel T, Thaddeus M. 2004. Generators for the cohomology ring of the moduli
space of rank 2 higgs bundles. Proceedings of the London Mathematical Society.
88(3), 632–658.
mla: Hausel, Tamás, and Michael Thaddeus. “Generators for the Cohomology Ring of
the Moduli Space of Rank 2 Higgs Bundles.” Proceedings of the London Mathematical
Society, vol. 88, no. 3, Oxford University Press, 2004, pp. 632–58, doi:10.1112/S0024611503014618.
short: T. Hausel, M. Thaddeus, Proceedings of the London Mathematical Society 88
(2004) 632–658.
date_created: 2018-12-11T11:52:10Z
date_published: 2004-05-01T00:00:00Z
date_updated: 2021-01-12T06:50:55Z
day: '01'
doi: 10.1112/S0024611503014618
extern: 1
intvolume: ' 88'
issue: '3'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/math/0003093
month: '05'
oa: 1
page: 632 - 658
publication: Proceedings of the London Mathematical Society
publication_status: published
publisher: Oxford University Press
publist_id: '5736'
quality_controlled: 0
status: public
title: Generators for the cohomology ring of the moduli space of rank 2 higgs bundles
type: journal_article
volume: 88
year: '2004'
...
---
_id: '13434'
abstract:
- lang: eng
text: Thin films of ionically doped gelatin have been color-patterned with submicrometer
precision using the wet-stamping technique. Inorganic salts are delivered onto
the gelatin surface from an agarose stamp, and diffuse into the gelatine layer,
producting deeply colored precipitates. Reaction fronts originating from different
features of the stamp cease within < 1 μm of each other, leaving sharp, transparent
regions in between.
article_processing_charge: No
article_type: original
author:
- first_name: C. J.
full_name: Campbell, C. J.
last_name: Campbell
- first_name: M.
full_name: Fialkowski, M.
last_name: Fialkowski
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
- first_name: I. T.
full_name: Bensemann, I. T.
last_name: Bensemann
- first_name: B. A.
full_name: Grzybowski, B. A.
last_name: Grzybowski
citation:
ama: Campbell CJ, Fialkowski M, Klajn R, Bensemann IT, Grzybowski BA. Color micro-
and nanopatterning with counter-propagating reaction-diffusion fronts. Advanced
Materials. 2004;16(21):1912-1917. doi:10.1002/adma.200400383
apa: Campbell, C. J., Fialkowski, M., Klajn, R., Bensemann, I. T., & Grzybowski,
B. A. (2004). Color micro- and nanopatterning with counter-propagating reaction-diffusion
fronts. Advanced Materials. Wiley. https://doi.org/10.1002/adma.200400383
chicago: Campbell, C. J., M. Fialkowski, Rafal Klajn, I. T. Bensemann, and B. A.
Grzybowski. “Color Micro- and Nanopatterning with Counter-Propagating Reaction-Diffusion
Fronts.” Advanced Materials. Wiley, 2004. https://doi.org/10.1002/adma.200400383.
ieee: C. J. Campbell, M. Fialkowski, R. Klajn, I. T. Bensemann, and B. A. Grzybowski,
“Color micro- and nanopatterning with counter-propagating reaction-diffusion fronts,”
Advanced Materials, vol. 16, no. 21. Wiley, pp. 1912–1917, 2004.
ista: Campbell CJ, Fialkowski M, Klajn R, Bensemann IT, Grzybowski BA. 2004. Color
micro- and nanopatterning with counter-propagating reaction-diffusion fronts.
Advanced Materials. 16(21), 1912–1917.
mla: Campbell, C. J., et al. “Color Micro- and Nanopatterning with Counter-Propagating
Reaction-Diffusion Fronts.” Advanced Materials, vol. 16, no. 21, Wiley,
2004, pp. 1912–17, doi:10.1002/adma.200400383.
short: C.J. Campbell, M. Fialkowski, R. Klajn, I.T. Bensemann, B.A. Grzybowski,
Advanced Materials 16 (2004) 1912–1917.
date_created: 2023-08-01T10:39:09Z
date_published: 2004-11-14T00:00:00Z
date_updated: 2023-08-08T12:41:23Z
day: '14'
doi: 10.1002/adma.200400383
extern: '1'
intvolume: ' 16'
issue: '21'
keyword:
- Mechanical Engineering
- Mechanics of Materials
- General Materials Science
language:
- iso: eng
month: '11'
oa_version: None
page: 1912-1917
publication: Advanced Materials
publication_identifier:
eissn:
- 1521-4095
issn:
- 0935-9648
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Color micro- and nanopatterning with counter-propagating reaction-diffusion
fronts
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2004'
...
---
_id: '13435'
abstract:
- lang: eng
text: Micropatterning of surfaces with several chemicals at different spatial locations
usually requires multiple stamping and registration steps. Here, we describe an
experimental method based on reaction–diffusion phenomena that allows for simultaneous
micropatterning of a substrate with several coloured chemicals. In this method,
called wet stamping (WETS), aqueous solutions of two or more inorganic salts are
delivered onto a film of dry, ionically doped gelatin from an agarose stamp patterned
in bas relief. Once in conformal contact, these salts diffuse into the gelatin,
where they react to give deeply coloured precipitates. Separation of colours in
the plane of the surface is the consequence of the differences in the diffusion
coefficients, the solubility products, and the amounts of different salts delivered
from the stamp, and is faithfully reproduced by a theoretical model based on a
system of reaction–diffusion partial differential equations. The multicolour micropatterns
are useful as non-binary optical elements, and could potentially form the basis
of new applications in microseparations and in controlled delivery.
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
- first_name: Marcin
full_name: Fialkowski, Marcin
last_name: Fialkowski
- first_name: Igor T.
full_name: Bensemann, Igor T.
last_name: Bensemann
- first_name: Agnieszka
full_name: Bitner, Agnieszka
last_name: Bitner
- first_name: C. J.
full_name: Campbell, C. J.
last_name: Campbell
- first_name: Kyle
full_name: Bishop, Kyle
last_name: Bishop
- first_name: Stoyan
full_name: Smoukov, Stoyan
last_name: Smoukov
- first_name: Bartosz A.
full_name: Grzybowski, Bartosz A.
last_name: Grzybowski
citation:
ama: Klajn R, Fialkowski M, Bensemann IT, et al. Multicolour micropatterning of
thin films of dry gels. Nature Materials. 2004;3:729-735. doi:10.1038/nmat1231
apa: Klajn, R., Fialkowski, M., Bensemann, I. T., Bitner, A., Campbell, C. J., Bishop,
K., … Grzybowski, B. A. (2004). Multicolour micropatterning of thin films of dry
gels. Nature Materials. Springer Nature. https://doi.org/10.1038/nmat1231
chicago: Klajn, Rafal, Marcin Fialkowski, Igor T. Bensemann, Agnieszka Bitner, C.
J. Campbell, Kyle Bishop, Stoyan Smoukov, and Bartosz A. Grzybowski. “Multicolour
Micropatterning of Thin Films of Dry Gels.” Nature Materials. Springer
Nature, 2004. https://doi.org/10.1038/nmat1231.
ieee: R. Klajn et al., “Multicolour micropatterning of thin films of dry
gels,” Nature Materials, vol. 3. Springer Nature, pp. 729–735, 2004.
ista: Klajn R, Fialkowski M, Bensemann IT, Bitner A, Campbell CJ, Bishop K, Smoukov
S, Grzybowski BA. 2004. Multicolour micropatterning of thin films of dry gels.
Nature Materials. 3, 729–735.
mla: Klajn, Rafal, et al. “Multicolour Micropatterning of Thin Films of Dry Gels.”
Nature Materials, vol. 3, Springer Nature, 2004, pp. 729–35, doi:10.1038/nmat1231.
short: R. Klajn, M. Fialkowski, I.T. Bensemann, A. Bitner, C.J. Campbell, K. Bishop,
S. Smoukov, B.A. Grzybowski, Nature Materials 3 (2004) 729–735.
date_created: 2023-08-01T10:39:23Z
date_published: 2004-09-19T00:00:00Z
date_updated: 2023-08-08T12:42:51Z
day: '19'
doi: 10.1038/nmat1231
extern: '1'
external_id:
pmid:
- '15378052'
intvolume: ' 3'
keyword:
- Mechanical Engineering
- Mechanics of Materials
- Condensed Matter Physics
- General Materials Science
- General Chemistry
language:
- iso: eng
month: '09'
oa_version: None
page: 729-735
pmid: 1
publication: Nature Materials
publication_identifier:
eissn:
- 1476-4660
issn:
- 1476-1122
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multicolour micropatterning of thin films of dry gels
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2004'
...
---
_id: '902'
abstract:
- lang: eng
text: 'We compare the functional spectrum of protein evolution in two separate animal
lineages with respect to two hypotheses: (1) rates of divergence are distributed
similarly among functional classes within both lineages, indicating that selective
pressure on the proteome is largely independent of organismic-level biological
requirements; and (2) rates of divergence are distributed differently among functional
classes within each lineage, indicating species-specific selective regimes impact
genome-wide substitutional patterns. Integrating comparative genome sequence with
data from tissue-specific expressed-sequence-tag (EST) libraries and detailed
database annotations, we find a functional genomic signature of rapid evolution
and selective constraint shared between mammalian and nematode lineages despite
their extensive morphological and ecological differences and distant common ancestry.
In both phyla, we find evidence of accelerated evolution among components of molecular
systems involved in coevolutionary change. In mammals, lineage-specific fast evolving
genes include those involved in reproduction, immunity, and possibly, maternal-fetal
conflict. Likelihood ratio tests provide evidence for positive selection in these
rapidly evolving functional categories in mammals. In contrast, slowly evolving
genes, in terms of amino acid or insertion/deletion (indel) change, in both phyla
are involved in core molecular processes such as transcription, translation, and
protein transport. Thus, strong purifying selection appears to act on the same
core cellular processes in both mammalian and nematode lineages, whereas positive
and/or relaxed selection acts on different biological processes in each lineage.'
acknowledgement: |-
We thank all members of the Hartl lab for their friendly support and Guillaume Achaz for valuable comments. We also thank the Sanger Institute and the Genome Sequencing Center at Wash- ington University, St. Louis and Lincoln Stein for providing un- finished C. briggsae sequence. Special thanks to the Bauer Center for Genomics Research at Harvard University and Gordon Kindl- mann at the University of Utah Scientific Computing and Imag- ing Institute for computational resources. R.J.K. is financially supported by a postdoctoral fellowship from the Natural Sciences and Engineering Research Council of Canada.
The publication costs of this article were defrayed in part by payment of page charges. This article must therefore be hereby marked “advertisement” in accordance with 18 USC section 1734 solely to indicate this fact.
author:
- first_name: Cristian
full_name: Castillo-Davis, Cristian I
last_name: Castillo Davis
- first_name: Fyodor
full_name: Fyodor Kondrashov
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
- first_name: Daniel
full_name: Hartl, Daniel L
last_name: Hartl
- first_name: Rob
full_name: Kulathinal, Rob J
last_name: Kulathinal
citation:
ama: 'Castillo Davis C, Kondrashov F, Hartl D, Kulathinal R. The functional genomic
distribution of protein divergence in two animal phyla: Coevolution, genomic conflict,
and constraint. Genome Research. 2004;14(5):802-811. doi:10.1101/gr.2195604'
apa: 'Castillo Davis, C., Kondrashov, F., Hartl, D., & Kulathinal, R. (2004).
The functional genomic distribution of protein divergence in two animal phyla:
Coevolution, genomic conflict, and constraint. Genome Research. Cold Spring
Harbor Laboratory Press. https://doi.org/10.1101/gr.2195604'
chicago: 'Castillo Davis, Cristian, Fyodor Kondrashov, Daniel Hartl, and Rob Kulathinal.
“The Functional Genomic Distribution of Protein Divergence in Two Animal Phyla:
Coevolution, Genomic Conflict, and Constraint.” Genome Research. Cold Spring
Harbor Laboratory Press, 2004. https://doi.org/10.1101/gr.2195604.'
ieee: 'C. Castillo Davis, F. Kondrashov, D. Hartl, and R. Kulathinal, “The functional
genomic distribution of protein divergence in two animal phyla: Coevolution, genomic
conflict, and constraint,” Genome Research, vol. 14, no. 5. Cold Spring
Harbor Laboratory Press, pp. 802–811, 2004.'
ista: 'Castillo Davis C, Kondrashov F, Hartl D, Kulathinal R. 2004. The functional
genomic distribution of protein divergence in two animal phyla: Coevolution, genomic
conflict, and constraint. Genome Research. 14(5), 802–811.'
mla: 'Castillo Davis, Cristian, et al. “The Functional Genomic Distribution of Protein
Divergence in Two Animal Phyla: Coevolution, Genomic Conflict, and Constraint.”
Genome Research, vol. 14, no. 5, Cold Spring Harbor Laboratory Press, 2004,
pp. 802–11, doi:10.1101/gr.2195604.'
short: C. Castillo Davis, F. Kondrashov, D. Hartl, R. Kulathinal, Genome Research
14 (2004) 802–811.
date_created: 2018-12-11T11:49:06Z
date_published: 2004-05-01T00:00:00Z
date_updated: 2021-01-12T08:21:47Z
day: '01'
doi: 10.1101/gr.2195604
extern: 1
intvolume: ' 14'
issue: '5'
month: '05'
page: 802 - 811
publication: Genome Research
publication_status: published
publisher: Cold Spring Harbor Laboratory Press
publist_id: '6750'
quality_controlled: 0
status: public
title: 'The functional genomic distribution of protein divergence in two animal phyla:
Coevolution, genomic conflict, and constraint'
type: journal_article
volume: 14
year: '2004'
...
---
_id: '9454'
article_processing_charge: No
article_type: original
author:
- first_name: Simon W.-L.
full_name: Chan, Simon W.-L.
last_name: Chan
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
- first_name: ' Zhixin'
full_name: Xie, Zhixin
last_name: Xie
- first_name: ' Lisa K.'
full_name: Johansen, Lisa K.
last_name: Johansen
- first_name: James C.
full_name: Carrington, James C.
last_name: Carrington
- first_name: Steven E.
full_name: Jacobsen, Steven E.
last_name: Jacobsen
citation:
ama: Chan SW-L, Zilberman D, Xie Zhixin, Johansen Lisa K., Carrington JC, Jacobsen
SE. RNA silencing genes control de novo DNA methylation. Science. 2004;303(5662):1336.
doi:10.1126/science.1095989
apa: Chan, S. W.-L., Zilberman, D., Xie, Zhixin, Johansen, Lisa K., Carrington,
J. C., & Jacobsen, S. E. (2004). RNA silencing genes control de novo DNA methylation.
Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1095989
chicago: Chan, Simon W.-L., Daniel Zilberman, Zhixin Xie, Lisa K. Johansen, James
C. Carrington, and Steven E. Jacobsen. “RNA Silencing Genes Control de Novo DNA
Methylation.” Science. American Association for the Advancement of Science,
2004. https://doi.org/10.1126/science.1095989.
ieee: S. W.-L. Chan, D. Zilberman, Zhixin Xie, Lisa K. Johansen, J. C. Carrington,
and S. E. Jacobsen, “RNA silencing genes control de novo DNA methylation,” Science,
vol. 303, no. 5662. American Association for the Advancement of Science, p. 1336,
2004.
ista: Chan SW-L, Zilberman D, Xie Zhixin, Johansen Lisa K., Carrington JC, Jacobsen
SE. 2004. RNA silencing genes control de novo DNA methylation. Science. 303(5662),
1336.
mla: Chan, Simon W. L., et al. “RNA Silencing Genes Control de Novo DNA Methylation.”
Science, vol. 303, no. 5662, American Association for the Advancement of
Science, 2004, p. 1336, doi:10.1126/science.1095989.
short: S.W.-L. Chan, D. Zilberman, Zhixin Xie, Lisa K. Johansen, J.C. Carrington,
S.E. Jacobsen, Science 303 (2004) 1336.
date_created: 2021-06-04T11:12:35Z
date_published: 2004-02-27T00:00:00Z
date_updated: 2021-12-14T09:13:53Z
day: '27'
department:
- _id: DaZi
doi: 10.1126/science.1095989
extern: '1'
external_id:
pmid:
- '14988555'
intvolume: ' 303'
issue: '5662'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '02'
oa_version: None
page: '1336'
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
issn:
- 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: RNA silencing genes control de novo DNA methylation
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 303
year: '2004'
...
---
_id: '9493'
abstract:
- lang: eng
text: In a number of organisms, transgenes containing transcribed inverted repeats
(IRs) that produce hairpin RNA can trigger RNA-mediated silencing, which is associated
with 21-24 nucleotide small interfering RNAs (siRNAs). In plants, IR-driven RNA
silencing also causes extensive cytosine methylation of homologous DNA in both
the transgene "trigger" and any other homologous DNA sequences--"targets". Endogenous
genomic sequences, including transposable elements and repeated elements, are
also subject to RNA-mediated silencing. The RNA silencing gene ARGONAUTE4 (AGO4)
is required for maintenance of DNA methylation at several endogenous loci and
for the establishment of methylation at the FWA gene. Here, we show that mutation
of AGO4 substantially reduces the maintenance of DNA methylation triggered by
IR transgenes, but AGO4 loss-of-function does not block the initiation of DNA
methylation by IRs. AGO4 primarily affects non-CG methylation of the target sequences,
while the IR trigger sequences lose methylation in all sequence contexts. Finally,
we find that AGO4 and the DRM methyltransferase genes are required for maintenance
of siRNAs at a subset of endogenous sequences, but AGO4 is not required for the
accumulation of IR-induced siRNAs or a number of endogenous siRNAs, suggesting
that AGO4 may function downstream of siRNA production.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
- first_name: Xiaofeng
full_name: Cao, Xiaofeng
last_name: Cao
- first_name: Lisa K.
full_name: Johansen, Lisa K.
last_name: Johansen
- first_name: Zhixin
full_name: Xie, Zhixin
last_name: Xie
- first_name: James C.
full_name: Carrington, James C.
last_name: Carrington
- first_name: Steven E.
full_name: Jacobsen, Steven E.
last_name: Jacobsen
citation:
ama: Zilberman D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE. Role of
Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats.
Current Biology. 2004;14(13):1214-1220. doi:10.1016/j.cub.2004.06.055
apa: Zilberman, D., Cao, X., Johansen, L. K., Xie, Z., Carrington, J. C., &
Jacobsen, S. E. (2004). Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation
triggered by inverted repeats. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2004.06.055
chicago: Zilberman, Daniel, Xiaofeng Cao, Lisa K. Johansen, Zhixin Xie, James C.
Carrington, and Steven E. Jacobsen. “Role of Arabidopsis ARGONAUTE4 in RNA-Directed
DNA Methylation Triggered by Inverted Repeats.” Current Biology. Elsevier,
2004. https://doi.org/10.1016/j.cub.2004.06.055.
ieee: D. Zilberman, X. Cao, L. K. Johansen, Z. Xie, J. C. Carrington, and S. E.
Jacobsen, “Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered
by inverted repeats,” Current Biology, vol. 14, no. 13. Elsevier, pp. 1214–1220,
2004.
ista: Zilberman D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE. 2004.
Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted
repeats. Current Biology. 14(13), 1214–1220.
mla: Zilberman, Daniel, et al. “Role of Arabidopsis ARGONAUTE4 in RNA-Directed DNA
Methylation Triggered by Inverted Repeats.” Current Biology, vol. 14, no.
13, Elsevier, 2004, pp. 1214–20, doi:10.1016/j.cub.2004.06.055.
short: D. Zilberman, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen,
Current Biology 14 (2004) 1214–1220.
date_created: 2021-06-07T10:33:00Z
date_published: 2004-07-13T00:00:00Z
date_updated: 2021-12-14T08:52:00Z
day: '13'
department:
- _id: DaZi
doi: 10.1016/j.cub.2004.06.055
extern: '1'
external_id:
pmid:
- '15242620 '
intvolume: ' 14'
issue: '13'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.cub.2004.06.055
month: '07'
oa: 1
oa_version: Published Version
page: 1214-1220
pmid: 1
publication: Current Biology
publication_identifier:
eissn:
- 1879-0445
issn:
- 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by
inverted repeats
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 14
year: '2004'
...
---
_id: '9511'
abstract:
- lang: eng
text: Recent progress in understanding the silencing of transposable elements in
the model plant Arabidopsis has revealed an interplay between DNA methylation,
histone methylation and small interfering RNAs. DNA and histone methylation are
not always sufficient to maintain silencing, and RNA-based reinforcement can be
needed to maintain as well as initiate it.
article_number: '249'
article_processing_charge: No
article_type: review
author:
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
- first_name: Steven
full_name: Henikoff, Steven
last_name: Henikoff
citation:
ama: 'Zilberman D, Henikoff S. Silencing of transposons in plant genomes: kick them
when they’re down. Genome Biology. 2004;5(12). doi:10.1186/gb-2004-5-12-249'
apa: 'Zilberman, D., & Henikoff, S. (2004). Silencing of transposons in plant
genomes: kick them when they’re down. Genome Biology. Springer Nature.
https://doi.org/10.1186/gb-2004-5-12-249'
chicago: 'Zilberman, Daniel, and Steven Henikoff. “Silencing of Transposons in Plant
Genomes: Kick Them When They’re Down.” Genome Biology. Springer Nature,
2004. https://doi.org/10.1186/gb-2004-5-12-249.'
ieee: 'D. Zilberman and S. Henikoff, “Silencing of transposons in plant genomes:
kick them when they’re down,” Genome Biology, vol. 5, no. 12. Springer
Nature, 2004.'
ista: 'Zilberman D, Henikoff S. 2004. Silencing of transposons in plant genomes:
kick them when they’re down. Genome Biology. 5(12), 249.'
mla: 'Zilberman, Daniel, and Steven Henikoff. “Silencing of Transposons in Plant
Genomes: Kick Them When They’re Down.” Genome Biology, vol. 5, no. 12,
249, Springer Nature, 2004, doi:10.1186/gb-2004-5-12-249.'
short: D. Zilberman, S. Henikoff, Genome Biology 5 (2004).
date_created: 2021-06-07T12:58:06Z
date_published: 2004-11-16T00:00:00Z
date_updated: 2021-12-14T08:44:24Z
day: '16'
department:
- _id: DaZi
doi: 10.1186/gb-2004-5-12-249
extern: '1'
external_id:
pmid:
- '15575975'
intvolume: ' 5'
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1186/gb-2004-5-12-249
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
publication: Genome Biology
publication_identifier:
eissn:
- 1465-6906
issn:
- 1474-760X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Silencing of transposons in plant genomes: kick them when they''re down'
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 5
year: '2004'
...