---
_id: '3589'
abstract:
- lang: eng
text: During zebrafish gastrulation, the interplay between patterning events and
morphogenesis creates an embryo out of a seemingly unstructured blastula stage
embryo, an embryo with distinct polarities along its anterior–posterior, dorsoventral
and left–right axes at the end of gastrulation.
article_processing_charge: No
author:
- first_name: Mathias
full_name: Köppen, Mathias
last_name: Köppen
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
citation:
ama: 'Köppen M, Heisenberg C-PJ. Cleavage and gastrulation in zebrafish embryos.
In: Encyclopedia of Life Sciences. Wiley-Blackwell; 2005. doi:10.1038/npg.els.0001072'
apa: Köppen, M., & Heisenberg, C.-P. J. (2005). Cleavage and gastrulation in
zebrafish embryos. In Encyclopedia of Life Sciences. Wiley-Blackwell. https://doi.org/10.1038/npg.els.0001072
chicago: Köppen, Mathias, and Carl-Philipp J Heisenberg. “Cleavage and Gastrulation
in Zebrafish Embryos.” In Encyclopedia of Life Sciences. Wiley-Blackwell,
2005. https://doi.org/10.1038/npg.els.0001072.
ieee: M. Köppen and C.-P. J. Heisenberg, “Cleavage and gastrulation in zebrafish
embryos,” in Encyclopedia of Life Sciences, Wiley-Blackwell, 2005.
ista: 'Köppen M, Heisenberg C-PJ. 2005.Cleavage and gastrulation in zebrafish embryos.
In: Encyclopedia of Life Sciences. .'
mla: Köppen, Mathias, and Carl-Philipp J. Heisenberg. “Cleavage and Gastrulation
in Zebrafish Embryos.” Encyclopedia of Life Sciences, Wiley-Blackwell,
2005, doi:10.1038/npg.els.0001072.
short: M. Köppen, C.-P.J. Heisenberg, in:, Encyclopedia of Life Sciences, Wiley-Blackwell,
2005.
date_created: 2018-12-11T12:04:07Z
date_published: 2005-09-23T00:00:00Z
date_updated: 2021-01-12T07:44:30Z
day: '23'
doi: 10.1038/npg.els.0001072
extern: '1'
language:
- iso: eng
month: '09'
oa_version: None
publication: Encyclopedia of Life Sciences
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2794'
status: public
title: Cleavage and gastrulation in zebrafish embryos
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2005'
...
---
_id: '3590'
acknowledgement: 'BOOK REVIEWED - Gastrulation: From Cells to Embryo, Edited by Claudio
Stern. Published by Cold Spring Harbor Laboratory Press: 2004. '
article_processing_charge: No
author:
- first_name: Irinka
full_name: Castanon Ortega, Irinka
last_name: Castanon Ortega
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
citation:
ama: Castanon Ortega I, Heisenberg C-PJ. A stern view of gastrulation. Nature
Cell Biology. 2005;7(1):19-19. doi:10.1038/ncb0105-19
apa: Castanon Ortega, I., & Heisenberg, C.-P. J. (2005). A stern view of gastrulation.
Nature Cell Biology. Nature Publishing Group. https://doi.org/10.1038/ncb0105-19
chicago: Castanon Ortega, Irinka, and Carl-Philipp J Heisenberg. “A Stern View of
Gastrulation.” Nature Cell Biology. Nature Publishing Group, 2005. https://doi.org/10.1038/ncb0105-19.
ieee: I. Castanon Ortega and C.-P. J. Heisenberg, “A stern view of gastrulation,”
Nature Cell Biology, vol. 7, no. 1. Nature Publishing Group, pp. 19–19,
2005.
ista: Castanon Ortega I, Heisenberg C-PJ. 2005. A stern view of gastrulation. Nature
Cell Biology. 7(1), 19–19.
mla: Castanon Ortega, Irinka, and Carl-Philipp J. Heisenberg. “A Stern View of Gastrulation.”
Nature Cell Biology, vol. 7, no. 1, Nature Publishing Group, 2005, pp.
19–19, doi:10.1038/ncb0105-19.
short: I. Castanon Ortega, C.-P.J. Heisenberg, Nature Cell Biology 7 (2005) 19–19.
date_created: 2018-12-11T12:04:07Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2020-10-07T06:26:47Z
day: '01'
doi: 10.1038/ncb0105-19
extern: '1'
intvolume: ' 7'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 19 - 19
publication: Nature Cell Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '2793'
status: public
title: A stern view of gastrulation
type: review
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2005'
...
---
_id: '3611'
abstract:
- lang: eng
text: 'We present two novel methods to infer mating patterns from genetic data.
They differ from existing statistical methods of parentage inference in that they
apply to populations that deviate from Hardy–Weinberg and linkage equilibrium,
and so are suited for the study of assortative mating in hybrid zones. The core
data set consists of genotypes at several loci for a number of full-sib clutches
of unknown parentage. Our inference is based throughout on estimates of allelic
associations within and across loci, such as heterozygote deficit and pairwise
linkage disequilibrium. In the first method, the most likely parents of a given
clutch are determined from the genotypic distribution of the associated adult
population, given an explicit model of nonrandom mating. This leads to estimates
of the strength of assortment. The second approach is based solely on the offspring
genotypes and relies on the fact that a linear relation exists between associations
among the offspring and those in the population of breeding pairs. We apply both
methods to a sample from the hybrid zone between the fire-bellied toads Bombina
bombina and B. variegata (Anura: Disco glossidae) in Croatia. Consistently, both
approaches provide no evidence for a departure from random mating, despite adequate
statistical power. Instead, B. variegata-like individuals among the adults contributed
disproportionately to the offspring cohort, consistent with their preference for
the type of breeding habitat in which this study was conducted.'
author:
- first_name: Beate
full_name: Nürnberger, Beate
last_name: Nürnberger
- first_name: Nicholas H
full_name: Nicholas Barton
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Loeske
full_name: Kruuk, Loeske E
last_name: Kruuk
- first_name: Timothy
full_name: Vines, Timothy H
last_name: Vines
citation:
ama: 'Nürnberger B, Barton NH, Kruuk L, Vines T. Mating patterns in a Bombina hybrid
zone: Inferences from adult and full sib genotypes. Heredity. 2005;94(2):247-257.
doi:10.1038/sj.hdy.6800607'
apa: 'Nürnberger, B., Barton, N. H., Kruuk, L., & Vines, T. (2005). Mating patterns
in a Bombina hybrid zone: Inferences from adult and full sib genotypes. Heredity.
Nature Publishing Group. https://doi.org/10.1038/sj.hdy.6800607'
chicago: 'Nürnberger, Beate, Nicholas H Barton, Loeske Kruuk, and Timothy Vines.
“Mating Patterns in a Bombina Hybrid Zone: Inferences from Adult and Full Sib
Genotypes.” Heredity. Nature Publishing Group, 2005. https://doi.org/10.1038/sj.hdy.6800607.'
ieee: 'B. Nürnberger, N. H. Barton, L. Kruuk, and T. Vines, “Mating patterns in
a Bombina hybrid zone: Inferences from adult and full sib genotypes,” Heredity,
vol. 94, no. 2. Nature Publishing Group, pp. 247–257, 2005.'
ista: 'Nürnberger B, Barton NH, Kruuk L, Vines T. 2005. Mating patterns in a Bombina
hybrid zone: Inferences from adult and full sib genotypes. Heredity. 94(2), 247–257.'
mla: 'Nürnberger, Beate, et al. “Mating Patterns in a Bombina Hybrid Zone: Inferences
from Adult and Full Sib Genotypes.” Heredity, vol. 94, no. 2, Nature Publishing
Group, 2005, pp. 247–57, doi:10.1038/sj.hdy.6800607.'
short: B. Nürnberger, N.H. Barton, L. Kruuk, T. Vines, Heredity 94 (2005) 247–257.
date_created: 2018-12-11T12:04:14Z
date_published: 2005-02-01T00:00:00Z
date_updated: 2021-01-12T07:44:39Z
day: '01'
doi: 10.1038/sj.hdy.6800607
extern: 1
intvolume: ' 94'
issue: '2'
month: '02'
page: 247 - 257
publication: Heredity
publication_status: published
publisher: Nature Publishing Group
publist_id: '2772'
quality_controlled: 0
status: public
title: 'Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib
genotypes'
type: journal_article
volume: 94
year: '2005'
...
---
_id: '3612'
abstract:
- lang: eng
text: Left-right asymmetry in snails is intriguing because individuals of opposite
chirality are either unable to mate or can only mate with difficulty, so could
be reproductively isolated from each other. We have therefore investigated chiral
evolution in the Japanese land snail genus Euhadra to understand whether changes
in chirality have promoted speciation. In particular, we aimed to understand the
effect of the maternal inheritance of chirality on reproductive isolation and
gene flow. We found that the mitochondrial DNA phylogeny of Euhadra is consistent
with a single, relatively ancient evolution of sinistral species and suggests
either recent “single-gene speciation” or gene flow between chiral morphs that
are unable to mate. To clarify the conditions under which new chiral morphs might
evolve and whether single-gene speciation can occur, we developed a mathematical
model that is relevant to any maternal-effect gene. The model shows that reproductive
character displacement can promote the evolution of new chiral morphs, tending
to counteract the positive frequency-dependent selection that would otherwise
drive the more common chiral morph to fixation. This therefore suggests a general
mechanism as to how chiral variation arises in snails. In populations that contain
both chiral morphs, two different situations are then possible. In the first,
gene flow is substantial between morphs even without interchiral mating, because
of the maternal inheritance of chirality. In the second, reproductive isolation
is possible but unstable, and will also lead to gene flow if intrachiral matings
occasionally produce offspring with the opposite chirality. Together, the results
imply that speciation by chiral reversal is only meaningful in the context of
a complex biogeographical process, and so must usually involve other factors.
In order to understand the roles of reproductive character displacement and gene
flow in the chiral evolution of Euhadra, it will be necessary to investigate populations
in which both chiral morphs coexist.
author:
- first_name: Angus
full_name: Davison, Angus
last_name: Davison
- first_name: Satoshi
full_name: Chiba, Satoshi
last_name: Chiba
- first_name: Nicholas H
full_name: Nicholas Barton
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Bernard
full_name: Clarke, Bernard
last_name: Clarke
citation:
ama: Davison A, Chiba S, Barton NH, Clarke B. Speciation and gene flow between snails
of opposing chirality. PLoS Biology. 2005;3(9). doi:10.1371/journal.pbio.0030282
apa: Davison, A., Chiba, S., Barton, N. H., & Clarke, B. (2005). Speciation
and gene flow between snails of opposing chirality. PLoS Biology. Public
Library of Science. https://doi.org/10.1371/journal.pbio.0030282
chicago: Davison, Angus, Satoshi Chiba, Nicholas H Barton, and Bernard Clarke. “Speciation
and Gene Flow between Snails of Opposing Chirality.” PLoS Biology. Public
Library of Science, 2005. https://doi.org/10.1371/journal.pbio.0030282.
ieee: A. Davison, S. Chiba, N. H. Barton, and B. Clarke, “Speciation and gene flow
between snails of opposing chirality,” PLoS Biology, vol. 3, no. 9. Public
Library of Science, 2005.
ista: Davison A, Chiba S, Barton NH, Clarke B. 2005. Speciation and gene flow between
snails of opposing chirality. PLoS Biology. 3(9).
mla: Davison, Angus, et al. “Speciation and Gene Flow between Snails of Opposing
Chirality.” PLoS Biology, vol. 3, no. 9, Public Library of Science, 2005,
doi:10.1371/journal.pbio.0030282.
short: A. Davison, S. Chiba, N.H. Barton, B. Clarke, PLoS Biology 3 (2005).
date_created: 2018-12-11T12:04:14Z
date_published: 2005-08-09T00:00:00Z
date_updated: 2021-01-12T07:44:39Z
day: '09'
doi: 10.1371/journal.pbio.0030282
extern: 1
intvolume: ' 3'
issue: '9'
month: '08'
publication: PLoS Biology
publication_status: published
publisher: Public Library of Science
publist_id: '2771'
quality_controlled: 0
status: public
title: Speciation and gene flow between snails of opposing chirality
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
volume: 3
year: '2005'
...
---
_id: '3613'
abstract:
- lang: eng
text: 'The extent of genetic variation in fitness is a crucial issue in evolutionary
biology and yet remains largely unresolved. In Drosophila melanogaster, we have
devised a method that allows the net effects on fitness of heterozygous wild-type
chromosomes to be measured, by competing them against two different “balancer”
chromosomes. We have applied the method to a large sample of 40 wild-type third
chromosomes and have measured fitnesses of nonlethal chromosomes as well as chromosomes
bearing recessive lethals. The measurements were made in the environment to which
the population was adapted and did not involve inbreeding. The results show an
extraordinary similarity in the behavior of replicates of the same chromosome,
indicating consistent genetic effects on total fitness. Some invading chromosomes
increased rapidly and some slowly, and some rose to appreciable frequency after
several months, but then declined again: in every case, the same pattern was seen
in each replicate. We estimated relative fitnesses, rates of change of fitness,
and relative viabilities, for each chromosome. There were significant fluctuations
around the fitted model, which were also highly replicable. Wild-type chromosomes
varied substantially in their effects on heterozygous fitness, and these effects
vary through time, most likely as a result of genotype × environment interactions.'
author:
- first_name: Michael
full_name: Gardner, Michael P
last_name: Gardner
- first_name: Kevin
full_name: Fowler, Kevin
last_name: Fowler
- first_name: Nicholas H
full_name: Nicholas Barton
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Linda
full_name: Patridge, Linda
last_name: Patridge
citation:
ama: 'Gardner M, Fowler K, Barton NH, Patridge L. Genetic variation for total fitness
in Drosophila melanogaster: Complex yet replicable patterns. Genetics.
2005;169(3):1553-1571. doi:10.1534/genetics.104.032367'
apa: 'Gardner, M., Fowler, K., Barton, N. H., & Patridge, L. (2005). Genetic
variation for total fitness in Drosophila melanogaster: Complex yet replicable
patterns. Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.104.032367'
chicago: 'Gardner, Michael, Kevin Fowler, Nicholas H Barton, and Linda Patridge.
“Genetic Variation for Total Fitness in Drosophila Melanogaster: Complex yet Replicable
Patterns.” Genetics. Genetics Society of America, 2005. https://doi.org/10.1534/genetics.104.032367.'
ieee: 'M. Gardner, K. Fowler, N. H. Barton, and L. Patridge, “Genetic variation
for total fitness in Drosophila melanogaster: Complex yet replicable patterns,”
Genetics, vol. 169, no. 3. Genetics Society of America, pp. 1553–1571,
2005.'
ista: 'Gardner M, Fowler K, Barton NH, Patridge L. 2005. Genetic variation for total
fitness in Drosophila melanogaster: Complex yet replicable patterns. Genetics.
169(3), 1553–1571.'
mla: 'Gardner, Michael, et al. “Genetic Variation for Total Fitness in Drosophila
Melanogaster: Complex yet Replicable Patterns.” Genetics, vol. 169, no.
3, Genetics Society of America, 2005, pp. 1553–71, doi:10.1534/genetics.104.032367.'
short: M. Gardner, K. Fowler, N.H. Barton, L. Patridge, Genetics 169 (2005) 1553–1571.
date_created: 2018-12-11T12:04:15Z
date_published: 2005-03-01T00:00:00Z
date_updated: 2021-01-12T07:44:40Z
day: '01'
doi: 10.1534/genetics.104.032367
extern: 1
intvolume: ' 169'
issue: '3'
month: '03'
page: 1553 - 1571
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '2770'
quality_controlled: 0
status: public
title: 'Genetic variation for total fitness in Drosophila melanogaster: Complex yet
replicable patterns'
type: journal_article
volume: 169
year: '2005'
...
---
_id: '3684'
abstract:
- lang: eng
text: |-
Ever since text processors became popular, users have
dreamt of handling documents printed on paper as comfortably
as electronic ones, with full text search typically
appearing very close to the top of the wish list.
This paper presents the design of a prototype system that
takes a step into this direction. The user’s desktop is continuously
monitored and of each detected document a high
resolution snapshot is taken using a digital camera. The
resulting image is processed using specially designed dewarping
and OCR algorithms, making a digital and fully
searchable version of the document available to the user in
real-time. These steps are performed without any user interaction.
This enables the system to run as a background
task without disturbing the user in her work, while at the
same time offering electronic access to all paper documents
that have been present on the desktop during the uptime of
the system.
author:
- first_name: Christoph
full_name: Christoph Lampert
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
- first_name: Tim
full_name: Braun,Tim
last_name: Braun
- first_name: Adrian
full_name: Ulges, Adrian
last_name: Ulges
- first_name: Daniel
full_name: Keysers,Daniel
last_name: Keysers
- first_name: Thomas
full_name: Breuel,Thomas M
last_name: Breuel
citation:
ama: 'Lampert C, Braun T, Ulges A, Keysers D, Breuel T. Oblivious document capture
and real-time retrieval. In: CBDAR; 2005:79-86.'
apa: 'Lampert, C., Braun, T., Ulges, A., Keysers, D., & Breuel, T. (2005). Oblivious
document capture and real-time retrieval (pp. 79–86). Presented at the CBDAR:
Camera Based Document Analysis and Recognition , CBDAR.'
chicago: Lampert, Christoph, Tim Braun, Adrian Ulges, Daniel Keysers, and Thomas
Breuel. “Oblivious Document Capture and Real-Time Retrieval,” 79–86. CBDAR, 2005.
ieee: 'C. Lampert, T. Braun, A. Ulges, D. Keysers, and T. Breuel, “Oblivious document
capture and real-time retrieval,” presented at the CBDAR: Camera Based Document
Analysis and Recognition , 2005, pp. 79–86.'
ista: 'Lampert C, Braun T, Ulges A, Keysers D, Breuel T. 2005. Oblivious document
capture and real-time retrieval. CBDAR: Camera Based Document Analysis and Recognition
, 79–86.'
mla: Lampert, Christoph, et al. Oblivious Document Capture and Real-Time Retrieval.
CBDAR, 2005, pp. 79–86.
short: C. Lampert, T. Braun, A. Ulges, D. Keysers, T. Breuel, in:, CBDAR, 2005,
pp. 79–86.
conference:
name: 'CBDAR: Camera Based Document Analysis and Recognition '
date_created: 2018-12-11T12:04:36Z
date_published: 2005-08-29T00:00:00Z
date_updated: 2021-01-12T07:45:07Z
day: '29'
extern: 1
main_file_link:
- open_access: '0'
url: http://pub.ist.ac.at/~chl/papers/lampert-cbdar2005.pdf
month: '08'
page: 79 - 86
publication_status: published
publisher: CBDAR
publist_id: '2693'
quality_controlled: 0
status: public
title: Oblivious document capture and real-time retrieval
type: conference
year: '2005'
...
---
_id: '3689'
abstract:
- lang: eng
text: Digital cameras have become almost ubiquitous and their use for fast and casual
capturing of natural images is unchallenged. For making images of documents, however,
they have not caught up to flatbed scanners yet, mainly because camera images
tend to suffer from distortion due to the perspective and are therefore limited
in their further use for archival or OCR. For images of non-planar paper surfaces
like books, page curl causes additional distortion, which poses an even greater
problem due to its nonlinearity. This paper presents a new algorithm for removing
both perspective and page curl distortion. It requires only a single camera image
as input and relies on a priori layout information instead of additional hardware.
Therefore, it is much more user friendly than most previous approaches, and allows
for flexible ad hoc document capture. Results are presented showing that the algorithm
produces visually pleasing output and increases OCR accuracy, thus having the
potential to become a general purpose preprocessing tool for camera based document
capture.
alternative_title:
- Document Analysis and Recognition
author:
- first_name: Adrian
full_name: Ulges, Adrian
last_name: Ulges
- first_name: Christoph
full_name: Christoph Lampert
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
- first_name: Thomas
full_name: Breuel,Thomas M
last_name: Breuel
citation:
ama: 'Ulges A, Lampert C, Breuel T. Document image dewarping using robust estimation
of curled text lines. In: Vol 2. IEEE; 2005:1001-1005. doi: 10.1109/ICDAR.2005.90'
apa: 'Ulges, A., Lampert, C., & Breuel, T. (2005). Document image dewarping
using robust estimation of curled text lines (Vol. 2, pp. 1001–1005). Presented
at the ICDAR: International Conference on Document Analysis and Recognition, IEEE.
https://doi.org/ 10.1109/ICDAR.2005.90'
chicago: Ulges, Adrian, Christoph Lampert, and Thomas Breuel. “Document Image Dewarping
Using Robust Estimation of Curled Text Lines,” 2:1001–5. IEEE, 2005. https://doi.org/ 10.1109/ICDAR.2005.90.
ieee: 'A. Ulges, C. Lampert, and T. Breuel, “Document image dewarping using robust
estimation of curled text lines,” presented at the ICDAR: International Conference
on Document Analysis and Recognition, 2005, vol. 2, pp. 1001–1005.'
ista: 'Ulges A, Lampert C, Breuel T. 2005. Document image dewarping using robust
estimation of curled text lines. ICDAR: International Conference on Document Analysis
and Recognition, Document Analysis and Recognition, vol. 2, 1001–1005.'
mla: Ulges, Adrian, et al. Document Image Dewarping Using Robust Estimation of
Curled Text Lines. Vol. 2, IEEE, 2005, pp. 1001–05, doi: 10.1109/ICDAR.2005.90.
short: A. Ulges, C. Lampert, T. Breuel, in:, IEEE, 2005, pp. 1001–1005.
conference:
name: 'ICDAR: International Conference on Document Analysis and Recognition'
date_created: 2018-12-11T12:04:38Z
date_published: 2005-09-01T00:00:00Z
date_updated: 2021-01-12T07:48:58Z
day: '01'
doi: ' 10.1109/ICDAR.2005.90'
extern: 1
intvolume: ' 2'
main_file_link:
- open_access: '0'
url: http:/pub.ist.ac.at/~chl/papers/ulges-icdar2004.pdf
month: '09'
page: 1001 - 1005
publication_status: published
publisher: IEEE
publist_id: '2680'
quality_controlled: 0
status: public
title: Document image dewarping using robust estimation of curled text lines
type: conference
volume: 2
year: '2005'
...
---
_id: '3691'
abstract:
- lang: eng
text: In strictly pseudoconvex domains with smooth boundary, we prove a commutator
relationship between admissible integral operators, as introduced by Lieb and
Range, and smooth vector fields which are tangential at boundary points. This
makes it possible to gain estimates for admissible operators in function spaces
which involve tangential derivatives. Examples are given under with circumstances
these can be transformed into genuine Sobolev- and C k-estimates.
author:
- first_name: Christoph
full_name: Christoph Lampert
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: Lampert C. Boundary regularity of admissible operators. Publicacions Matemàtiques.
2005;49(1):179-195. doi:10.5565/PUBLMAT_49105_08
apa: Lampert, C. (2005). Boundary regularity of admissible operators. Publicacions
Matemàtiques. Universitat Autònoma de Barcelona, Departament de Matemàtique.
https://doi.org/10.5565/PUBLMAT_49105_08
chicago: Lampert, Christoph. “Boundary Regularity of Admissible Operators.” Publicacions
Matemàtiques. Universitat Autònoma de Barcelona, Departament de Matemàtique,
2005. https://doi.org/10.5565/PUBLMAT_49105_08.
ieee: C. Lampert, “Boundary regularity of admissible operators,” Publicacions
Matemàtiques, vol. 49, no. 1. Universitat Autònoma de Barcelona, Departament
de Matemàtique, pp. 179–195, 2005.
ista: Lampert C. 2005. Boundary regularity of admissible operators. Publicacions
Matemàtiques. 49(1), 179–195.
mla: Lampert, Christoph. “Boundary Regularity of Admissible Operators.” Publicacions
Matemàtiques, vol. 49, no. 1, Universitat Autònoma de Barcelona, Departament
de Matemàtique, 2005, pp. 179–95, doi:10.5565/PUBLMAT_49105_08.
short: C. Lampert, Publicacions Matemàtiques 49 (2005) 179–195.
date_created: 2018-12-11T12:04:38Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:48:59Z
day: '01'
doi: 10.5565/PUBLMAT_49105_08
extern: 1
intvolume: ' 49'
issue: '1'
month: '01'
page: 179 - 195
publication: Publicacions Matemàtiques
publication_status: published
publisher: Universitat Autònoma de Barcelona, Departament de Matemàtique
publist_id: '2673'
quality_controlled: 0
status: public
title: Boundary regularity of admissible operators
type: journal_article
volume: 49
year: '2005'
...
---
_id: '3720'
article_processing_charge: No
author:
- first_name: José
full_name: Guzmán, José
id: 30CC5506-F248-11E8-B48F-1D18A9856A87
last_name: Guzmán
- first_name: Zoltan
full_name: Gerevich, Zoltan
last_name: Gerevich
- first_name: Jan
full_name: Hengstler, Jan
last_name: Hengstler
- first_name: Peter
full_name: Illes, Peter
last_name: Illes
- first_name: Werner
full_name: Kleemann, Werner
last_name: Kleemann
citation:
ama: Guzmán J, Gerevich Z, Hengstler J, Illes P, Kleemann W. P2Y1 receptors inhibit
both strength and plasticity of glutamatergic synaptic neurotransmission in the
rat prefrontal cortex. Synapse. 2005;57(4):235-238. doi:10.1002/syn.20177
apa: Guzmán, J., Gerevich, Z., Hengstler, J., Illes, P., & Kleemann, W. (2005).
P2Y1 receptors inhibit both strength and plasticity of glutamatergic synaptic
neurotransmission in the rat prefrontal cortex. Synapse. Wiley. https://doi.org/10.1002/syn.20177
chicago: Guzmán, José, Zoltan Gerevich, Jan Hengstler, Peter Illes, and Werner Kleemann.
“P2Y1 Receptors Inhibit Both Strength and Plasticity of Glutamatergic Synaptic
Neurotransmission in the Rat Prefrontal Cortex.” Synapse. Wiley, 2005.
https://doi.org/10.1002/syn.20177.
ieee: J. Guzmán, Z. Gerevich, J. Hengstler, P. Illes, and W. Kleemann, “P2Y1 receptors
inhibit both strength and plasticity of glutamatergic synaptic neurotransmission
in the rat prefrontal cortex.,” Synapse, vol. 57, no. 4. Wiley, pp. 235–238,
2005.
ista: Guzmán J, Gerevich Z, Hengstler J, Illes P, Kleemann W. 2005. P2Y1 receptors
inhibit both strength and plasticity of glutamatergic synaptic neurotransmission
in the rat prefrontal cortex. Synapse. 57(4), 235–238.
mla: Guzmán, José, et al. “P2Y1 Receptors Inhibit Both Strength and Plasticity of
Glutamatergic Synaptic Neurotransmission in the Rat Prefrontal Cortex.” Synapse,
vol. 57, no. 4, Wiley, 2005, pp. 235–38, doi:10.1002/syn.20177.
short: J. Guzmán, Z. Gerevich, J. Hengstler, P. Illes, W. Kleemann, Synapse 57 (2005)
235–238.
date_created: 2018-12-11T12:04:48Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:51:43Z
day: '01'
doi: 10.1002/syn.20177
extern: '1'
intvolume: ' 57'
issue: '4'
language:
- iso: eng
month: '01'
oa_version: None
page: 235 - 238
publication: Synapse
publication_status: published
publisher: Wiley
publist_id: '2510'
status: public
title: P2Y1 receptors inhibit both strength and plasticity of glutamatergic synaptic
neurotransmission in the rat prefrontal cortex.
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 57
year: '2005'
...
---
_id: '3721'
abstract:
- lang: eng
text: Recent advances in atomic force microscopy allowed globular and membrane proteins
to be mechanically unfolded on a single-molecule level. Presented is an extension
to the existing force spectroscopy experiments. While unfolding single bacteriorhodopsins
from native purple membranes, small oscillation amplitudes (6–9nm) were supplied
to the vertical displacement of the cantilever at a frequency of 3kHz. The phase
and amplitude response of the cantilever-protein system was converted to reveal
the elastic (conservative) and viscous (dissipative) contributions to the unfolding
process. The elastic response (stiffness) of the extended parts of the protein
were in the range of a few tens pN/nm and could be well described by the derivative
of the wormlike chain model. Discrete events in the viscous response coincided
with the unfolding of single secondary structure elements and were in the range
of 1μNs/m. In addition, these force modulation spectroscopy experiments revealed
novel mechanical unfolding intermediates of bacteriorhodopsin. We found that kinks
result in a loss of unfolding cooperativity in transmembrane helices. Reconstructing
force-distance spectra by the integration of amplitude-distance spectra verified
their position, offering a novel approach to detect intermediates during the forced
unfolding of single proteins.
author:
- first_name: Harald L
full_name: Harald Janovjak
id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
last_name: Janovjak
orcid: 0000-0002-8023-9315
- first_name: Daniel
full_name: Mueller, Daniel J
last_name: Mueller
- first_name: Andrew
full_name: Humphris, Andrew D
last_name: Humphris
citation:
ama: Janovjak HL, Mueller D, Humphris A. Molecular force modulation spectroscopy
revealing the dynamic response of single bacteriorhodopsins. Biophysical Journal.
2005;88(2):1423-1431. doi:10.1529/biophysj.104.052746
apa: Janovjak, H. L., Mueller, D., & Humphris, A. (2005). Molecular force modulation
spectroscopy revealing the dynamic response of single bacteriorhodopsins. Biophysical
Journal. Biophysical Society. https://doi.org/10.1529/biophysj.104.052746
chicago: Janovjak, Harald L, Daniel Mueller, and Andrew Humphris. “Molecular Force
Modulation Spectroscopy Revealing the Dynamic Response of Single Bacteriorhodopsins.”
Biophysical Journal. Biophysical Society, 2005. https://doi.org/10.1529/biophysj.104.052746.
ieee: H. L. Janovjak, D. Mueller, and A. Humphris, “Molecular force modulation spectroscopy
revealing the dynamic response of single bacteriorhodopsins,” Biophysical Journal,
vol. 88, no. 2. Biophysical Society, pp. 1423–1431, 2005.
ista: Janovjak HL, Mueller D, Humphris A. 2005. Molecular force modulation spectroscopy
revealing the dynamic response of single bacteriorhodopsins. Biophysical Journal.
88(2), 1423–1431.
mla: Janovjak, Harald L., et al. “Molecular Force Modulation Spectroscopy Revealing
the Dynamic Response of Single Bacteriorhodopsins.” Biophysical Journal,
vol. 88, no. 2, Biophysical Society, 2005, pp. 1423–31, doi:10.1529/biophysj.104.052746.
short: H.L. Janovjak, D. Mueller, A. Humphris, Biophysical Journal 88 (2005) 1423–1431.
date_created: 2018-12-11T12:04:48Z
date_published: 2005-02-01T00:00:00Z
date_updated: 2021-01-12T07:51:43Z
day: '01'
doi: 10.1529/biophysj.104.052746
extern: 1
intvolume: ' 88'
issue: '2'
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1305144/
month: '02'
oa: 1
page: 1423 - 1431
publication: Biophysical Journal
publication_status: published
publisher: Biophysical Society
publist_id: '2509'
quality_controlled: 0
status: public
title: Molecular force modulation spectroscopy revealing the dynamic response of single
bacteriorhodopsins
type: journal_article
volume: 88
year: '2005'
...
---
_id: '3741'
abstract:
- lang: eng
text: In an age of increasingly large data sets, investigators in many different
disciplines have turned to clustering as a tool for data analysis and exploration.
Existing clustering methods, however, typically depend on several nontrivial assumptions
about the structure of data. Here, we reformulate the clustering problem from
an information theoretic perspective that avoids many of these assumptions. In
particular, our formulation obviates the need for defining a cluster "prototype,"
does not require an a priori similarity metric, is invariant to changes in the
representation of the data, and naturally captures nonlinear relations. We apply
this approach to different domains and find that it consistently produces clusters
that are more coherent than those extracted by existing algorithms. Finally, our
approach provides a way of clustering based on collective notions of similarity
rather than the traditional pairwise measures.
author:
- first_name: N.
full_name: Slonim,N.
last_name: Slonim
- first_name: G.
full_name: Atwal,G.
last_name: Atwal
- first_name: Gasper
full_name: Gasper Tkacik
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
- first_name: William
full_name: Bialek, William S
last_name: Bialek
citation:
ama: Slonim N, Atwal G, Tkačik G, Bialek W. Information-based clustering. PNAS.
2005;102(51):18297-18302. doi:10.1073/pnas.0507432102
apa: Slonim, N., Atwal, G., Tkačik, G., & Bialek, W. (2005). Information-based
clustering. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.0507432102
chicago: Slonim, N., G. Atwal, Gašper Tkačik, and William Bialek. “Information-Based
Clustering.” PNAS. National Academy of Sciences, 2005. https://doi.org/10.1073/pnas.0507432102.
ieee: N. Slonim, G. Atwal, G. Tkačik, and W. Bialek, “Information-based clustering,”
PNAS, vol. 102, no. 51. National Academy of Sciences, pp. 18297–18302,
2005.
ista: Slonim N, Atwal G, Tkačik G, Bialek W. 2005. Information-based clustering.
PNAS. 102(51), 18297–18302.
mla: Slonim, N., et al. “Information-Based Clustering.” PNAS, vol. 102, no.
51, National Academy of Sciences, 2005, pp. 18297–302, doi:10.1073/pnas.0507432102.
short: N. Slonim, G. Atwal, G. Tkačik, W. Bialek, PNAS 102 (2005) 18297–18302.
date_created: 2018-12-11T12:04:55Z
date_published: 2005-12-20T00:00:00Z
date_updated: 2021-01-12T07:51:52Z
day: '20'
doi: 10.1073/pnas.0507432102
extern: 1
intvolume: ' 102'
issue: '51'
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1317937
month: '12'
oa: 1
page: 18297 - 18302
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '2490'
quality_controlled: 0
status: public
title: Information-based clustering
type: journal_article
volume: 102
year: '2005'
...
---
_id: '3746'
abstract:
- lang: eng
text: We address the practical problems of estimating the information relations
that characterize large networks. Building on methods developed for analysis of
the neural code, we show that reliable estimates of mutual information can be
obtained with manageable computational effort. The same methods allow estimation
of higher order, multi-information terms. These ideas are illustrated by analyses
of gene expression, financial markets, and consumer preferences. In each case,
information theoretic measures correlate with independent, intuitive measures
of the underlying structures in the system.
author:
- first_name: Noam
full_name: Slonim,Noam
last_name: Slonim
- first_name: Gurinder
full_name: Atwal,Gurinder S
last_name: Atwal
- first_name: Gasper
full_name: Gasper Tkacik
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
- first_name: William
full_name: Bialek, William S
last_name: Bialek
citation:
ama: Slonim N, Atwal G, Tkačik G, Bialek W. Estimating mutual information and multi-information
in large networks. ArXiv. 2005:1-11.
apa: Slonim, N., Atwal, G., Tkačik, G., & Bialek, W. (2005). Estimating mutual
information and multi-information in large networks. ArXiv. ArXiv.
chicago: Slonim, Noam, Gurinder Atwal, Gašper Tkačik, and William Bialek. “Estimating
Mutual Information and Multi-Information in Large Networks.” ArXiv. ArXiv,
2005.
ieee: N. Slonim, G. Atwal, G. Tkačik, and W. Bialek, “Estimating mutual information
and multi-information in large networks,” ArXiv. ArXiv, pp. 1–11, 2005.
ista: Slonim N, Atwal G, Tkačik G, Bialek W. 2005. Estimating mutual information
and multi-information in large networks. ArXiv, 1–11, .
mla: Slonim, Noam, et al. “Estimating Mutual Information and Multi-Information in
Large Networks.” ArXiv, ArXiv, 2005, pp. 1–11.
short: N. Slonim, G. Atwal, G. Tkačik, W. Bialek, ArXiv (2005) 1–11.
date_created: 2018-12-11T12:04:56Z
date_published: 2005-02-03T00:00:00Z
date_updated: 2021-01-12T07:51:54Z
day: '03'
extern: 1
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/cs/0502017v1
month: '02'
oa: 1
page: 1 - 11
publication: ArXiv
publication_status: published
publisher: ArXiv
publist_id: '2484'
quality_controlled: 0
status: public
title: Estimating mutual information and multi-information in large networks
type: preprint
year: '2005'
...
---
_id: '3753'
abstract:
- lang: eng
text: Characterizing the dynamics of specific RNA levels requires real-time RNA
profiling in a single cell. We show that the combination of a synthetic modular
genetic system with fluorescence correlation spectroscopy allows us to directly
measure in real time the activity of any specific promoter in prokaryotes. Using
a simple inducible gene expression system, we found that induced RNA levels within
a single bacterium of Escherichia coli exhibited a pulsating profile in response
to a steady input of inducer. The genetic deletion of an efflux pump system, a
key determinant of antibiotic resistance, altered the pulsating transcriptional
dynamics and caused overexpression of induced RNA. In contrast with population
measurements, real-time RNA profiling permits identifying relationships between
genotypes and transcriptional dynamics that are accessible only at the level of
the single cell.
acknowledgement: '4237'
author:
- first_name: Thuc
full_name: Le,Thuc T.
last_name: Le
- first_name: Sébastien
full_name: Harlepp, Sébastien
last_name: Harlepp
- first_name: Calin C
full_name: Calin Guet
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
- first_name: Kimberly
full_name: Dittmar,Kimberly
last_name: Dittmar
- first_name: Thierry
full_name: Emonet,Thierry
last_name: Emonet
- first_name: Tao
full_name: Pan,Tao
last_name: Pan
- first_name: Philippe
full_name: Cluzel,Philippe
last_name: Cluzel
citation:
ama: Le T, Harlepp S, Guet CC, et al. Real-time RNA profiling within a single bacterium.
PNAS. 2005;102(26):9160-9164. doi:10.1073/pnas.0503311102
apa: Le, T., Harlepp, S., Guet, C. C., Dittmar, K., Emonet, T., Pan, T., & Cluzel,
P. (2005). Real-time RNA profiling within a single bacterium. PNAS. National
Academy of Sciences. https://doi.org/10.1073/pnas.0503311102
chicago: Le, Thuc, Sébastien Harlepp, Calin C Guet, Kimberly Dittmar, Thierry Emonet,
Tao Pan, and Philippe Cluzel. “Real-Time RNA Profiling within a Single Bacterium.”
PNAS. National Academy of Sciences, 2005. https://doi.org/10.1073/pnas.0503311102.
ieee: T. Le et al., “Real-time RNA profiling within a single bacterium,”
PNAS, vol. 102, no. 26. National Academy of Sciences, pp. 9160–9164, 2005.
ista: Le T, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P. 2005. Real-time
RNA profiling within a single bacterium. PNAS. 102(26), 9160–9164.
mla: Le, Thuc, et al. “Real-Time RNA Profiling within a Single Bacterium.” PNAS,
vol. 102, no. 26, National Academy of Sciences, 2005, pp. 9160–64, doi:10.1073/pnas.0503311102.
short: T. Le, S. Harlepp, C.C. Guet, K. Dittmar, T. Emonet, T. Pan, P. Cluzel, PNAS
102 (2005) 9160–9164.
date_created: 2018-12-11T12:04:59Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:51:57Z
day: '01'
doi: 10.1073/pnas.0503311102
extern: 1
intvolume: ' 102'
issue: '26'
month: '01'
page: 9160 - 9164
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '2476'
quality_controlled: 0
status: public
title: Real-time RNA profiling within a single bacterium
type: journal_article
volume: 102
year: '2005'
...
---
_id: '3763'
abstract:
- lang: eng
text: The generation of realistic motion satisfying user-defined requirements is
one of the most important goals of computer animation. Our aim in this paper is
the synthesis of realistic, controllable motion for lightweight natural objects
in a gaseous medium. We formulate this problem as a large-scale spacetime optimization
with user controls and fluid motion equations as constraints. We have devised
novel and effective methods to make this large optimization tractable. Initial
trajectories are generated with data-driven synthesis based on stylistic motion
planning. Smoothed particle hydrodynamics (SPH) is used during optimization to
produce fluid simulations at a reasonable computational cost, while interesting
vortex-based fluid motion is generated by recording the presence of vortices in
the initial trajectories and maintaining them through optimization. Object rotations
are refined as a postprocess to enhance the visual quality of the results. We
demonstrate our techniques on a number of animations involving single or multiple
objects.
article_processing_charge: No
author:
- first_name: Lin
full_name: Shi, Lin
last_name: Shi
- first_name: Yizhou
full_name: Yu, Yizhou
last_name: Yu
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
- first_name: Stephen
full_name: Chenney, Stephen
last_name: Chenney
citation:
ama: Shi L, Yu Y, Wojtan C, Chenney S. Controllable motion synthesis in a gaseous
medium. The Visual Computer. 2005;21(7):474-487. doi:10.1007/s00371-005-0296-0
apa: Shi, L., Yu, Y., Wojtan, C., & Chenney, S. (2005). Controllable motion
synthesis in a gaseous medium. The Visual Computer. Springer. https://doi.org/10.1007/s00371-005-0296-0
chicago: Shi, Lin, Yizhou Yu, Chris Wojtan, and Stephen Chenney. “Controllable Motion
Synthesis in a Gaseous Medium.” The Visual Computer. Springer, 2005. https://doi.org/10.1007/s00371-005-0296-0.
ieee: L. Shi, Y. Yu, C. Wojtan, and S. Chenney, “Controllable motion synthesis in
a gaseous medium,” The Visual Computer, vol. 21, no. 7. Springer, pp. 474–487,
2005.
ista: Shi L, Yu Y, Wojtan C, Chenney S. 2005. Controllable motion synthesis in a
gaseous medium. The Visual Computer. 21(7), 474–487.
mla: Shi, Lin, et al. “Controllable Motion Synthesis in a Gaseous Medium.” The
Visual Computer, vol. 21, no. 7, Springer, 2005, pp. 474–87, doi:10.1007/s00371-005-0296-0.
short: L. Shi, Y. Yu, C. Wojtan, S. Chenney, The Visual Computer 21 (2005) 474–487.
date_created: 2018-12-11T12:05:02Z
date_published: 2005-08-01T00:00:00Z
date_updated: 2023-02-23T11:41:36Z
day: '01'
doi: 10.1007/s00371-005-0296-0
extern: '1'
intvolume: ' 21'
issue: '7'
language:
- iso: eng
month: '08'
oa_version: None
page: 474 - 487
publication: The Visual Computer
publication_status: published
publisher: Springer
publist_id: '2465'
status: public
title: Controllable motion synthesis in a gaseous medium
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2005'
...
---
_id: '3808'
abstract:
- lang: eng
text: Action potentials in central neurons are initiated near the axon initial segment,
propagate into the axon, and finally invade the presynaptic terminals, where they
trigger transmitter release. Voltage-gated Na(+) channels are key determinants
of excitability, but Na(+) channel density and properties in axons and presynaptic
terminals of cortical neurons have not been examined yet. In hippocampal mossy
fiber boutons, which emerge from parent axons en passant, Na(+) channels are very
abundant, with an estimated number of approximately 2000 channels per bouton.
Presynaptic Na(+) channels show faster inactivation kinetics than somatic channels,
suggesting differences between subcellular compartments of the same cell. Computational
analysis of action potential propagation in axon-multibouton structures reveals
that Na(+) channels in boutons preferentially amplify the presynaptic action potential
and enhance Ca(2+) inflow, whereas Na(+) channels in axons control the reliability
and speed of propagation. Thus, presynaptic and axonal Na(+) channels contribute
differentially to mossy fiber synaptic transmission.
author:
- first_name: Dominique
full_name: Engel, Dominique
last_name: Engel
- first_name: Peter M
full_name: Peter Jonas
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: Engel D, Jonas PM. Presynaptic action potential amplification by voltage-gated
Na+ channels in hippocampal mossy fiber boutons. Neuron. 2005;45(3):405-417.
doi:10.1016/j.neuron.2004.12.048
apa: Engel, D., & Jonas, P. M. (2005). Presynaptic action potential amplification
by voltage-gated Na+ channels in hippocampal mossy fiber boutons. Neuron.
Elsevier. https://doi.org/10.1016/j.neuron.2004.12.048
chicago: Engel, Dominique, and Peter M Jonas. “Presynaptic Action Potential Amplification
by Voltage-Gated Na+ Channels in Hippocampal Mossy Fiber Boutons.” Neuron.
Elsevier, 2005. https://doi.org/10.1016/j.neuron.2004.12.048
.
ieee: D. Engel and P. M. Jonas, “Presynaptic action potential amplification by voltage-gated
Na+ channels in hippocampal mossy fiber boutons,” Neuron, vol. 45, no.
3. Elsevier, pp. 405–17, 2005.
ista: Engel D, Jonas PM. 2005. Presynaptic action potential amplification by voltage-gated
Na+ channels in hippocampal mossy fiber boutons. Neuron. 45(3), 405–17.
mla: Engel, Dominique, and Peter M. Jonas. “Presynaptic Action Potential Amplification
by Voltage-Gated Na+ Channels in Hippocampal Mossy Fiber Boutons.” Neuron,
vol. 45, no. 3, Elsevier, 2005, pp. 405–17, doi:10.1016/j.neuron.2004.12.048 .
short: D. Engel, P.M. Jonas, Neuron 45 (2005) 405–17.
date_created: 2018-12-11T12:05:17Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T07:52:21Z
day: '01'
doi: '10.1016/j.neuron.2004.12.048 '
extern: 1
intvolume: ' 45'
issue: '3'
month: '01'
page: 405 - 17
publication: Neuron
publication_status: published
publisher: Elsevier
publist_id: '2400'
quality_controlled: 0
status: public
title: Presynaptic action potential amplification by voltage-gated Na+ channels in
hippocampal mossy fiber boutons
type: journal_article
volume: 45
year: '2005'
...
---
_id: '3812'
abstract:
- lang: eng
text: Hippocampal GABAergic interneurons show diverse molecular and morphological
properties. The functional significance of this diversity for information processing
is poorly understood. Here we show that cholecystokinin (CCK)-expressing interneurons
in rat dentate gyrus release GABA in a highly asynchronous manner, in contrast
to parvalbumin (PV) interneurons. With a gamma-frequency burst of ten action potentials,
the ratio of asynchronous to synchronous release is 3:1 in CCK interneurons but
is 1:5 in parvalbumin interneurons. N-type channels trigger synchronous and asynchronous
release in CCK interneuron synapses, whereas P/Q-type Ca(2+) channels mediate
release at PV interneuron synapses. Effects of Ca(2+) chelators suggest that both
a long-lasting presynaptic Ca(2+) transient and a large distance between Ca(2+)
source and sensor of exocytosis contribute to the higher ratio of asynchronous
to synchronous release in CCK interneuron synapses. Asynchronous release occurs
at physiological temperature and with behaviorally relevant stimulation patterns,
thus generating long-lasting inhibition in the brain.
author:
- first_name: Stefan
full_name: Hefft, Stefan
last_name: Hefft
- first_name: Peter M
full_name: Peter Jonas
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: Hefft S, Jonas PM. Asynchronous GABA release generates long-lasting inhibition
at a hippocampal interneuron-principal neuron synapse (Review). Nature Neuroscience.
2005;8(10):1319-1328. doi:10.1038/nn1542
apa: Hefft, S., & Jonas, P. M. (2005). Asynchronous GABA release generates long-lasting
inhibition at a hippocampal interneuron-principal neuron synapse (Review). Nature
Neuroscience. Nature Publishing Group. https://doi.org/10.1038/nn1542
chicago: Hefft, Stefan, and Peter M Jonas. “Asynchronous GABA Release Generates
Long-Lasting Inhibition at a Hippocampal Interneuron-Principal Neuron Synapse
(Review).” Nature Neuroscience. Nature Publishing Group, 2005. https://doi.org/10.1038/nn1542.
ieee: S. Hefft and P. M. Jonas, “Asynchronous GABA release generates long-lasting
inhibition at a hippocampal interneuron-principal neuron synapse (Review),” Nature
Neuroscience, vol. 8, no. 10. Nature Publishing Group, pp. 1319–28, 2005.
ista: Hefft S, Jonas PM. 2005. Asynchronous GABA release generates long-lasting
inhibition at a hippocampal interneuron-principal neuron synapse (Review). Nature
Neuroscience. 8(10), 1319–28.
mla: Hefft, Stefan, and Peter M. Jonas. “Asynchronous GABA Release Generates Long-Lasting
Inhibition at a Hippocampal Interneuron-Principal Neuron Synapse (Review).” Nature
Neuroscience, vol. 8, no. 10, Nature Publishing Group, 2005, pp. 1319–28,
doi:10.1038/nn1542.
short: S. Hefft, P.M. Jonas, Nature Neuroscience 8 (2005) 1319–28.
date_created: 2018-12-11T12:05:18Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2019-04-26T07:22:35Z
day: '01'
doi: 10.1038/nn1542
extern: 1
intvolume: ' 8'
issue: '10'
month: '01'
page: 1319 - 28
publication: Nature Neuroscience
publication_status: published
publisher: Nature Publishing Group
publist_id: '2399'
quality_controlled: 0
status: public
title: Asynchronous GABA release generates long-lasting inhibition at a hippocampal
interneuron-principal neuron synapse (Review)
type: review
volume: 8
year: '2005'
...
---
_id: '3892'
abstract:
- lang: eng
text: 'In 2-player non-zero-sum games, Nash equilibria capture the options for rational
behavior if each player attempts to maximize her payoff. In contrast to classical
game theory, we consider lexicographic objectives: first, each player tries to
maximize her own payoff, and then, the player tries to minimize the opponent''s
payoff. Such objectives arise naturally in the verification of systems with multiple
components. There, instead of proving that each component satisfies its specification
no matter how the other components behave, it often suffices to prove that each
component satisfies its specification provided that the other components satisfy
their specifications. We say that a Nash equilibrium is secure if it is an equilibrium
with respect to the lexicographic objectives of both players. We prove that in
graph games with Borel winning conditions, which include the games that arise
in verification, there may be several Nash equilibria, but there is always a unique
maximal payoff profile of a secure equilibrium. We show how this equilibrium can
be computed in the case of omega-regular winning conditions, and we characterize
the memory requirements of strategies that achieve the equilibrium.'
acknowledgement: |-
This research was supported in part by the ONR grant N00014-02-1-0671, the AFOSR MURI grant F49620-00-1-0327, and the NSF grant CCR-0225610.
This is an extended version of the paper “Games with Secure Equilibria” that appeared in the proceedings of Logic in Computer Science (LICS), 2004.
alternative_title:
- LNCS
author:
- first_name: Krishnendu
full_name: Krishnendu Chatterjee
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Thomas A
full_name: Thomas Henzinger
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Marcin
full_name: Jurdziński, Marcin
last_name: Jurdziński
citation:
ama: 'Chatterjee K, Henzinger TA, Jurdziński M. Games with secure equilibria. In:
Vol 3657. Springer; 2005:141-161. doi:10.1007/11561163_7'
apa: 'Chatterjee, K., Henzinger, T. A., & Jurdziński, M. (2005). Games with
secure equilibria (Vol. 3657, pp. 141–161). Presented at the FMCO: Formal Methods
for Components and Objects, Springer. https://doi.org/10.1007/11561163_7'
chicago: Chatterjee, Krishnendu, Thomas A Henzinger, and Marcin Jurdziński. “Games
with Secure Equilibria,” 3657:141–61. Springer, 2005. https://doi.org/10.1007/11561163_7.
ieee: 'K. Chatterjee, T. A. Henzinger, and M. Jurdziński, “Games with secure equilibria,”
presented at the FMCO: Formal Methods for Components and Objects, 2005, vol. 3657,
pp. 141–161.'
ista: 'Chatterjee K, Henzinger TA, Jurdziński M. 2005. Games with secure equilibria.
FMCO: Formal Methods for Components and Objects, LNCS, vol. 3657, 141–161.'
mla: Chatterjee, Krishnendu, et al. Games with Secure Equilibria. Vol. 3657,
Springer, 2005, pp. 141–61, doi:10.1007/11561163_7.
short: K. Chatterjee, T.A. Henzinger, M. Jurdziński, in:, Springer, 2005, pp. 141–161.
conference:
name: 'FMCO: Formal Methods for Components and Objects'
date_created: 2018-12-11T12:05:44Z
date_published: 2005-09-19T00:00:00Z
date_updated: 2021-01-12T07:53:00Z
day: '19'
doi: 10.1007/11561163_7
extern: 1
intvolume: ' 3657'
month: '09'
page: 141 - 161
publication_status: published
publisher: Springer
publist_id: '2269'
quality_controlled: 0
status: public
title: Games with secure equilibria
type: conference
volume: 3657
year: '2005'
...
---
_id: '3893'
abstract:
- lang: eng
text: 'We study infinite stochastic games played by two-players on a finite graph
with goals specified by sets of infinite traces. The games are concurrent (each
player simultaneously and independently chooses an action at each round), stochastic
(the next state is determined by a probability distribution depending on the current
state and the chosen actions), infinite (the game continues for an infinite number
of rounds), nonzero-sum (the players'' goals are not necessarily conflicting),
and undiscounted. We show that if each player has an W-regular objective expressed
as a paxity objective, then there exists an epsilon-Nash equilibrium, for every
epsilon > 0. However, exact Nash equilibria need not exist. We study the complexity
of finding values (payoff profile) of an epsilon-Nash equilibrium. We show that
the values of an epsilon-Nash equilibrium in nonzero-sum concurrent parity games
can be computed by solving the following two simpler problems: computing the values
of zero-sum (the goals of the players axe strictly conflicting) concurrent parity
games and computing epsilon-Nash equilibrium values of nonzero-sum concurrent
games with reachability objectives. As a consequence we establish that values
of an epsilon-Nash equilibrium can be computed in TFNP (total functional NP),
and hence in EXPTIME.'
alternative_title:
- 'LNCS '
author:
- first_name: Krishnendu
full_name: Krishnendu Chatterjee
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
citation:
ama: 'Chatterjee K. Two-player nonzero-sum ω-regular games. In: Vol 3653. Schloss
Dagstuhl - Leibniz-Zentrum für Informatik; 2005:413-427. doi:10.1007/11539452_32'
apa: 'Chatterjee, K. (2005). Two-player nonzero-sum ω-regular games (Vol. 3653,
pp. 413–427). Presented at the CONCUR: Concurrency Theory, Schloss Dagstuhl -
Leibniz-Zentrum für Informatik. https://doi.org/10.1007/11539452_32'
chicago: Chatterjee, Krishnendu. “Two-Player Nonzero-Sum ω-Regular Games,” 3653:413–27.
Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005. https://doi.org/10.1007/11539452_32.
ieee: 'K. Chatterjee, “Two-player nonzero-sum ω-regular games,” presented at the
CONCUR: Concurrency Theory, 2005, vol. 3653, pp. 413–427.'
ista: 'Chatterjee K. 2005. Two-player nonzero-sum ω-regular games. CONCUR: Concurrency
Theory, LNCS , vol. 3653, 413–427.'
mla: Chatterjee, Krishnendu. Two-Player Nonzero-Sum ω-Regular Games. Vol.
3653, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005, pp. 413–27, doi:10.1007/11539452_32.
short: K. Chatterjee, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005,
pp. 413–427.
conference:
name: 'CONCUR: Concurrency Theory'
date_created: 2018-12-11T12:05:44Z
date_published: 2005-09-05T00:00:00Z
date_updated: 2021-01-12T07:53:00Z
day: '05'
doi: 10.1007/11539452_32
extern: 1
intvolume: ' 3653'
month: '09'
page: 413 - 427
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '2267'
quality_controlled: 0
status: public
title: Two-player nonzero-sum ω-regular games
type: conference
volume: 3653
year: '2005'
...
---
_id: '3896'
abstract:
- lang: eng
text: Temporal Logic Model Checking is one of the most potent tools for the verification
of finite state systems. Computation Tree Logic (CTL) has gained popularity because
unlike most other logics, CTL model checking of a single transition system can
be achieved in polynomial time. However, in most real-life problems, specially
in distributed and parallel systems, the system consist of a set of concurrent
processes and the verification problem translates to model check the composition
of the component processes. Since explicit composition leads to state explosion,
verifying the system without actually composing the components is attractive,
even for possibly restrictive class of systems. We show that the problem of compositional
CTL model checking is PSPACE complete for the class of systems composed of components
that are tree-like transition structure and do not interact among themselves.
For the simplest forms of existential and universal CTL formulas model checking
turns out to be NP complete and coNP complete, respectively. The results hold
for both synchronous and asynchronous composition.
acknowledgement: Pallab Dasgupta and P.P.Chakrabarti thank the Dept. of Science &
Tech., Govt. of India, for partial support of this work
alternative_title:
- LNCS
author:
- first_name: Krishnendu
full_name: Krishnendu Chatterjee
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Pallab
full_name: Dasgupta, Pallab
last_name: Dasgupta
- first_name: Partha
full_name: Chakrabarti, Partha P
last_name: Chakrabarti
citation:
ama: 'Chatterjee K, Dasgupta P, Chakrabarti P. Complexity of compositional model
checking of computation tree logic on simple structures. In: Vol 3326. Springer;
2005:89-102. doi:10.1007/978-3-540-30536-1_13'
apa: 'Chatterjee, K., Dasgupta, P., & Chakrabarti, P. (2005). Complexity of
compositional model checking of computation tree logic on simple structures (Vol.
3326, pp. 89–102). Presented at the IWDC: International Workshop on Distributed
Computing , Springer. https://doi.org/10.1007/978-3-540-30536-1_13'
chicago: Chatterjee, Krishnendu, Pallab Dasgupta, and Partha Chakrabarti. “Complexity
of Compositional Model Checking of Computation Tree Logic on Simple Structures,”
3326:89–102. Springer, 2005. https://doi.org/10.1007/978-3-540-30536-1_13.
ieee: 'K. Chatterjee, P. Dasgupta, and P. Chakrabarti, “Complexity of compositional
model checking of computation tree logic on simple structures,” presented at the
IWDC: International Workshop on Distributed Computing , 2005, vol. 3326, pp. 89–102.'
ista: 'Chatterjee K, Dasgupta P, Chakrabarti P. 2005. Complexity of compositional
model checking of computation tree logic on simple structures. IWDC: International
Workshop on Distributed Computing , LNCS, vol. 3326, 89–102.'
mla: Chatterjee, Krishnendu, et al. Complexity of Compositional Model Checking
of Computation Tree Logic on Simple Structures. Vol. 3326, Springer, 2005,
pp. 89–102, doi:10.1007/978-3-540-30536-1_13.
short: K. Chatterjee, P. Dasgupta, P. Chakrabarti, in:, Springer, 2005, pp. 89–102.
conference:
name: 'IWDC: International Workshop on Distributed Computing '
date_created: 2018-12-11T12:05:45Z
date_published: 2005-02-14T00:00:00Z
date_updated: 2021-01-12T07:53:02Z
day: '14'
doi: 10.1007/978-3-540-30536-1_13
extern: 1
intvolume: ' 3326'
month: '02'
page: 89 - 102
publication_status: published
publisher: Springer
publist_id: '2261'
quality_controlled: 0
status: public
title: Complexity of compositional model checking of computation tree logic on simple
structures
type: conference
volume: 3326
year: '2005'
...
---
_id: '3902'
author:
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
- first_name: Jacobus
full_name: Boomsma, Jacobus
last_name: Boomsma
citation:
ama: 'Cremer S, Boomsma J. The drawback of mobility: invasive species in a globalised
world. In: Elsevier; 2005.'
apa: 'Cremer, S., & Boomsma, J. (2005). The drawback of mobility: invasive species
in a globalised world. Presented at the Marie Curie Conference, Elsevier.'
chicago: 'Cremer, Sylvia, and Jacobus Boomsma. “The Drawback of Mobility: Invasive
Species in a Globalised World.” Elsevier, 2005.'
ieee: 'S. Cremer and J. Boomsma, “The drawback of mobility: invasive species in
a globalised world,” presented at the Marie Curie Conference, 2005.'
ista: 'Cremer S, Boomsma J. 2005. The drawback of mobility: invasive species in
a globalised world. Marie Curie Conference.'
mla: 'Cremer, Sylvia, and Jacobus Boomsma. The Drawback of Mobility: Invasive
Species in a Globalised World. Elsevier, 2005.'
short: S. Cremer, J. Boomsma, in:, Elsevier, 2005.
conference:
name: Marie Curie Conference
date_created: 2018-12-11T12:05:47Z
date_published: 2005-09-01T00:00:00Z
date_updated: 2021-01-12T07:53:05Z
day: '01'
extern: '1'
language:
- iso: eng
main_file_link:
- url: http://www.docstoc.com/docs/15327566/1-The-drawback-of-mobility-invasive-species-in-a-globalised-world
month: '09'
oa_version: None
publication_status: published
publisher: Elsevier
publist_id: '2252'
status: public
title: 'The drawback of mobility: invasive species in a globalised world'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2005'
...