---
_id: '6323'
abstract:
- lang: eng
text: This paper surveys recent progress towards the Manin conjecture for (singular
and non-singular) del Pezzo surfaces. To illustrate some of the techniques available,
an upper bound of the expected order of magnitude is established for a singular
del Pezzo surface of degree four.
alternative_title:
- Clay Mathemetics Proceedings
arxiv: 1
author:
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
citation:
ama: 'Browning TD. An overview of Manin’s conjecture for del Pezzo surfaces. In:
A Tribute to Gauss and Dirichlet. Vol 7. Analytic Number Theory. American
Mathematical Society; 2007:39-56.'
apa: Browning, T. D. (2007). An overview of Manin’s conjecture for del Pezzo surfaces.
In A Tribute to Gauss and Dirichlet (Vol. 7, pp. 39–56). American Mathematical
Society.
chicago: Browning, Timothy D. “An Overview of Manin’s Conjecture for Del Pezzo Surfaces.”
In A Tribute to Gauss and Dirichlet, 7:39–56. Analytic Number Theory. American
Mathematical Society, 2007.
ieee: T. D. Browning, “An overview of Manin’s conjecture for del Pezzo surfaces,”
in A Tribute to Gauss and Dirichlet, vol. 7, American Mathematical Society,
2007, pp. 39–56.
ista: 'Browning TD. 2007.An overview of Manin’s conjecture for del Pezzo surfaces.
In: A Tribute to Gauss and Dirichlet. Clay Mathemetics Proceedings, vol. 7, 39–56.'
mla: Browning, Timothy D. “An Overview of Manin’s Conjecture for Del Pezzo Surfaces.”
A Tribute to Gauss and Dirichlet, vol. 7, American Mathematical Society,
2007, pp. 39–56.
short: T.D. Browning, in:, A Tribute to Gauss and Dirichlet, American Mathematical
Society, 2007, pp. 39–56.
date_created: 2019-04-16T14:26:12Z
date_published: 2007-01-01T00:00:00Z
date_updated: 2021-01-12T08:07:05Z
extern: '1'
external_id:
arxiv:
- 0511041v2
intvolume: ' 7'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/math/0511041v2
oa: 1
oa_version: Preprint
page: 39-56
publication: A Tribute to Gauss and Dirichlet
publication_status: published
publisher: American Mathematical Society
quality_controlled: '1'
series_title: Analytic Number Theory
status: public
title: An overview of Manin's conjecture for del Pezzo surfaces
type: book_chapter
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2007'
...
---
_id: '13424'
abstract:
- lang: eng
text: 'Changing shapes: Metastable spherical aggregates of gold nanoparticles undergo
a one-to-one, thermally induced transformation into heterodimers comprising connected
plate and spherical domains. By controlling the reaction time, it is possible
to isolate a variety of structures differing in the relative sizes of the domains
and in the overall optical properties (see picture).'
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
- first_name: Anatoliy O.
full_name: Pinchuk, Anatoliy O.
last_name: Pinchuk
- first_name: George C.
full_name: Schatz, George C.
last_name: Schatz
- first_name: Bartosz A.
full_name: Grzybowski, Bartosz A.
last_name: Grzybowski
citation:
ama: Klajn R, Pinchuk AO, Schatz GC, Grzybowski BA. Synthesis of heterodimeric sphere–prism
nanostructures via metastable gold supraspheres. Angewandte Chemie International
Edition. 2007;46(44):8363-8367. doi:10.1002/anie.200702570
apa: Klajn, R., Pinchuk, A. O., Schatz, G. C., & Grzybowski, B. A. (2007). Synthesis
of heterodimeric sphere–prism nanostructures via metastable gold supraspheres.
Angewandte Chemie International Edition. Wiley. https://doi.org/10.1002/anie.200702570
chicago: Klajn, Rafal, Anatoliy O. Pinchuk, George C. Schatz, and Bartosz A. Grzybowski.
“Synthesis of Heterodimeric Sphere–Prism Nanostructures via Metastable Gold Supraspheres.”
Angewandte Chemie International Edition. Wiley, 2007. https://doi.org/10.1002/anie.200702570.
ieee: R. Klajn, A. O. Pinchuk, G. C. Schatz, and B. A. Grzybowski, “Synthesis of
heterodimeric sphere–prism nanostructures via metastable gold supraspheres,” Angewandte
Chemie International Edition, vol. 46, no. 44. Wiley, pp. 8363–8367, 2007.
ista: Klajn R, Pinchuk AO, Schatz GC, Grzybowski BA. 2007. Synthesis of heterodimeric
sphere–prism nanostructures via metastable gold supraspheres. Angewandte Chemie
International Edition. 46(44), 8363–8367.
mla: Klajn, Rafal, et al. “Synthesis of Heterodimeric Sphere–Prism Nanostructures
via Metastable Gold Supraspheres.” Angewandte Chemie International Edition,
vol. 46, no. 44, Wiley, 2007, pp. 8363–67, doi:10.1002/anie.200702570.
short: R. Klajn, A.O. Pinchuk, G.C. Schatz, B.A. Grzybowski, Angewandte Chemie International
Edition 46 (2007) 8363–8367.
date_created: 2023-08-01T10:31:08Z
date_published: 2007-11-12T00:00:00Z
date_updated: 2023-08-08T11:17:57Z
day: '12'
doi: 10.1002/anie.200702570
extern: '1'
external_id:
pmid:
- '17902083'
intvolume: ' 46'
issue: '44'
keyword:
- General Chemistry
- Catalysis
language:
- iso: eng
month: '11'
oa_version: None
page: 8363-8367
pmid: 1
publication: Angewandte Chemie International Edition
publication_identifier:
eissn:
- 1521-3773
issn:
- 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Synthesis of heterodimeric sphere–prism nanostructures via metastable gold
supraspheres
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 46
year: '2007'
...
---
_id: '13425'
abstract:
- lang: eng
text: Nanoparticles (NPs) decorated with ligands combining photoswitchable dipoles
and covalent cross-linkers can be assembled by light into organized, three-dimensional
suprastructures of various types and sizes. NPs covered with only few photoactive
ligands form metastable crystals that can be assembled and disassembled “on demand”
by using light of different wavelengths. For higher surface concentrations, self-assembly
is irreversible, and the NPs organize into permanently cross-linked structures
including robust supracrystals and plastic spherical aggregates.
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
- first_name: Kyle J. M.
full_name: Bishop, Kyle J. M.
last_name: Bishop
- first_name: Bartosz A.
full_name: Grzybowski, Bartosz A.
last_name: Grzybowski
citation:
ama: Klajn R, Bishop KJM, Grzybowski BA. Light-controlled self-assembly of reversible
and irreversible nanoparticle suprastructures. Proceedings of the National
Academy of Sciences. 2007;104(25):10305-10309. doi:10.1073/pnas.0611371104
apa: Klajn, R., Bishop, K. J. M., & Grzybowski, B. A. (2007). Light-controlled
self-assembly of reversible and irreversible nanoparticle suprastructures. Proceedings
of the National Academy of Sciences. Proceedings of the National Academy of
Sciences. https://doi.org/10.1073/pnas.0611371104
chicago: Klajn, Rafal, Kyle J. M. Bishop, and Bartosz A. Grzybowski. “Light-Controlled
Self-Assembly of Reversible and Irreversible Nanoparticle Suprastructures.” Proceedings
of the National Academy of Sciences. Proceedings of the National Academy of
Sciences, 2007. https://doi.org/10.1073/pnas.0611371104.
ieee: R. Klajn, K. J. M. Bishop, and B. A. Grzybowski, “Light-controlled self-assembly
of reversible and irreversible nanoparticle suprastructures,” Proceedings of
the National Academy of Sciences, vol. 104, no. 25. Proceedings of the National
Academy of Sciences, pp. 10305–10309, 2007.
ista: Klajn R, Bishop KJM, Grzybowski BA. 2007. Light-controlled self-assembly of
reversible and irreversible nanoparticle suprastructures. Proceedings of the National
Academy of Sciences. 104(25), 10305–10309.
mla: Klajn, Rafal, et al. “Light-Controlled Self-Assembly of Reversible and Irreversible
Nanoparticle Suprastructures.” Proceedings of the National Academy of Sciences,
vol. 104, no. 25, Proceedings of the National Academy of Sciences, 2007, pp. 10305–09,
doi:10.1073/pnas.0611371104.
short: R. Klajn, K.J.M. Bishop, B.A. Grzybowski, Proceedings of the National Academy
of Sciences 104 (2007) 10305–10309.
date_created: 2023-08-01T10:31:19Z
date_published: 2007-06-19T00:00:00Z
date_updated: 2023-08-08T11:24:51Z
day: '19'
doi: 10.1073/pnas.0611371104
extern: '1'
external_id:
pmid:
- '17563381'
intvolume: ' 104'
issue: '25'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1073/pnas.0611371104
month: '06'
oa: 1
oa_version: Published Version
page: 10305-10309
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Light-controlled self-assembly of reversible and irreversible nanoparticle
suprastructures
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 104
year: '2007'
...
---
_id: '13426'
abstract:
- lang: eng
text: Photoswelling of thin films of dichromated gelatin provides a basis for fabrication
of multilevel surface reliefs via sequential UV illumination through different
photomasks. The remarkable feature of this simple, benchtop technique is that
by adjusting irradiation times, film thickness, or its hydration state the heights
of the developed features can be varied from few nanometers to tens of microns.
After UV exposure, the surface structures can be replicated faithfully into either
soft or hard PDMS stamps.
article_processing_charge: No
article_type: original
author:
- first_name: Maciej
full_name: Paszewski, Maciej
last_name: Paszewski
- first_name: Stoyan K.
full_name: Smoukov, Stoyan K.
last_name: Smoukov
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
- first_name: Bartosz A.
full_name: Grzybowski, Bartosz A.
last_name: Grzybowski
citation:
ama: Paszewski M, Smoukov SK, Klajn R, Grzybowski BA. Multilevel surface nano- and
microstructuring via sequential photoswelling of dichromated gelatin. Langmuir.
2007;23(10):5419-5422. doi:10.1021/la062982c
apa: Paszewski, M., Smoukov, S. K., Klajn, R., & Grzybowski, B. A. (2007). Multilevel
surface nano- and microstructuring via sequential photoswelling of dichromated
gelatin. Langmuir. American Chemical Society. https://doi.org/10.1021/la062982c
chicago: Paszewski, Maciej, Stoyan K. Smoukov, Rafal Klajn, and Bartosz A. Grzybowski.
“Multilevel Surface Nano- and Microstructuring via Sequential Photoswelling of
Dichromated Gelatin.” Langmuir. American Chemical Society, 2007. https://doi.org/10.1021/la062982c.
ieee: M. Paszewski, S. K. Smoukov, R. Klajn, and B. A. Grzybowski, “Multilevel surface
nano- and microstructuring via sequential photoswelling of dichromated gelatin,”
Langmuir, vol. 23, no. 10. American Chemical Society, pp. 5419–5422, 2007.
ista: Paszewski M, Smoukov SK, Klajn R, Grzybowski BA. 2007. Multilevel surface
nano- and microstructuring via sequential photoswelling of dichromated gelatin.
Langmuir. 23(10), 5419–5422.
mla: Paszewski, Maciej, et al. “Multilevel Surface Nano- and Microstructuring via
Sequential Photoswelling of Dichromated Gelatin.” Langmuir, vol. 23, no.
10, American Chemical Society, 2007, pp. 5419–22, doi:10.1021/la062982c.
short: M. Paszewski, S.K. Smoukov, R. Klajn, B.A. Grzybowski, Langmuir 23 (2007)
5419–5422.
date_created: 2023-08-01T10:31:33Z
date_published: 2007-04-11T00:00:00Z
date_updated: 2023-08-08T11:26:24Z
day: '11'
doi: 10.1021/la062982c
extern: '1'
external_id:
pmid:
- '17425340'
intvolume: ' 23'
issue: '10'
keyword:
- Electrochemistry
- Spectroscopy
- Surfaces and Interfaces
- Condensed Matter Physics
- General Materials Science
language:
- iso: eng
month: '04'
oa_version: None
page: 5419-5422
pmid: 1
publication: Langmuir
publication_identifier:
eissn:
- 1520-5827
issn:
- 0743-7463
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multilevel surface nano- and microstructuring via sequential photoswelling
of dichromated gelatin
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2007'
...
---
_id: '13427'
abstract:
- lang: eng
text: Deformable, spherical aggregates of metal nanoparticles connected by long-chain
dithiol ligands self-assemble into nanostructured materials of macroscopic dimensions.
These materials are plastic and moldable against arbitrarily shaped masters and
can be thermally hardened into polycrystalline metal structures of controllable
porosity. In addition, in both plastic and hardened states, the assemblies are
electrically conductive and exhibit Ohmic characteristics down to ∼20 volts per
meter. The self-assembly method leading to such materials is applicable both to
pure metals and to bimetallic structures of various elemental compositions.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
- first_name: Kyle J. M.
full_name: Bishop, Kyle J. M.
last_name: Bishop
- first_name: Marcin
full_name: Fialkowski, Marcin
last_name: Fialkowski
- first_name: Maciej
full_name: Paszewski, Maciej
last_name: Paszewski
- first_name: Christopher J.
full_name: Campbell, Christopher J.
last_name: Campbell
- first_name: Timothy P.
full_name: Gray, Timothy P.
last_name: Gray
- first_name: Bartosz A.
full_name: Grzybowski, Bartosz A.
last_name: Grzybowski
citation:
ama: Klajn R, Bishop KJM, Fialkowski M, et al. Plastic and moldable metals by self-assembly
of sticky nanoparticle aggregates. Science. 2007;316(5822):261-264. doi:10.1126/science.1139131
apa: Klajn, R., Bishop, K. J. M., Fialkowski, M., Paszewski, M., Campbell, C. J.,
Gray, T. P., & Grzybowski, B. A. (2007). Plastic and moldable metals by self-assembly
of sticky nanoparticle aggregates. Science. American Association for the
Advancement of Science. https://doi.org/10.1126/science.1139131
chicago: Klajn, Rafal, Kyle J. M. Bishop, Marcin Fialkowski, Maciej Paszewski, Christopher
J. Campbell, Timothy P. Gray, and Bartosz A. Grzybowski. “Plastic and Moldable
Metals by Self-Assembly of Sticky Nanoparticle Aggregates.” Science. American
Association for the Advancement of Science, 2007. https://doi.org/10.1126/science.1139131.
ieee: R. Klajn et al., “Plastic and moldable metals by self-assembly of sticky
nanoparticle aggregates,” Science, vol. 316, no. 5822. American Association
for the Advancement of Science, pp. 261–264, 2007.
ista: Klajn R, Bishop KJM, Fialkowski M, Paszewski M, Campbell CJ, Gray TP, Grzybowski
BA. 2007. Plastic and moldable metals by self-assembly of sticky nanoparticle
aggregates. Science. 316(5822), 261–264.
mla: Klajn, Rafal, et al. “Plastic and Moldable Metals by Self-Assembly of Sticky
Nanoparticle Aggregates.” Science, vol. 316, no. 5822, American Association
for the Advancement of Science, 2007, pp. 261–64, doi:10.1126/science.1139131.
short: R. Klajn, K.J.M. Bishop, M. Fialkowski, M. Paszewski, C.J. Campbell, T.P.
Gray, B.A. Grzybowski, Science 316 (2007) 261–264.
date_created: 2023-08-01T10:36:08Z
date_published: 2007-04-13T00:00:00Z
date_updated: 2023-08-08T11:28:29Z
day: '13'
doi: 10.1126/science.1139131
extern: '1'
external_id:
pmid:
- '17431176'
intvolume: ' 316'
issue: '5822'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '04'
oa_version: None
page: 261-264
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
issn:
- 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Plastic and moldable metals by self-assembly of sticky nanoparticle aggregates
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 316
year: '2007'
...
---
_id: '904'
abstract:
- lang: eng
text: 'Background: Independently evolving lineages mostly accumulate different changes,
which leads to their gradual divergence. However, parallel accumulation of identical
changes is also common, especially in traits with only a small number of possible
states. Results: We characterize parallelism in evolution of coding sequences
in three four-species sets of genomes of mammals, Drosophila, and yeasts. Each
such set contains two independent evolutionary paths, which we call paths I and
II. An amino acid replacement which occurred along path I also occurs along path
II with the probability 50-8211;80% of that expected under selective neutrality.
Thus, the per site rate of parallel evolution of proteins is several times higher
than their average rate of evolution, but still lower than the rate of evolution
of neutral sequences. This deficit may be caused by changes in the fitness landscape,
leading to a replacement being possible along path I but not along path II. However,
constant, weak selection assumed by the nearly neutral model of evolution appears
to be a more likely explanation. Then, the average coefficient of selection associated
with an amino acid replacement, in the units of the effective population size,
must exceed ∼0.4, and the fraction of effectively neutral replacements must be
below ∼30%. At a majority of evolvable amino acid sites, only a relatively small
number of different amino acids is permitted. Conclusion: High, but below-neutral,
rates of parallel amino acid replacements suggest that a majority of amino acid
replacements that occur in evolution are subject to weak, but non-trivial, selection,
as predicted by Ohta''s nearly-neutral theory.'
acknowledgement: G.A.B. gratefully acknowledges fellowships from the Pew Charitable
Trusts award 2000-002558 and the Burroughs Wellcome Fund award 1001782, both to
Princeton University. F.A.K. is a National Science Foundation Graduate Fellow. M.B.'s
work is partially supported by the NSERC Discovery grant. I.D. and A.P. were partially
supported by grant HL066681 (L.A.P., I.D. and S.M.), Berkeley-PGA, under the Programs
for Genomic Applications, funded by National Heart, Lung, & Blood Institute and
Department of Energy Contract DE-AC02-05CH11231, University of California. This
work was partially supported through the Molecular and Cellular Biology Program
of the Russian Academy of Sciences.
author:
- first_name: Georgii
full_name: Bazykin, Georgii A
last_name: Bazykin
- first_name: Fyodor
full_name: Fyodor Kondrashov
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
- first_name: Michael
full_name: Brudno, Michael
last_name: Brudno
- first_name: Alexander
full_name: Poliakov, Alexander V
last_name: Poliakov
- first_name: Inna
full_name: Dubchak, Inna L
last_name: Dubchak
- first_name: Alexey
full_name: Kondrashov, Alexey S
last_name: Kondrashov
citation:
ama: Bazykin G, Kondrashov F, Brudno M, Poliakov A, Dubchak I, Kondrashov A. Extensive
parallelism in protein evolution. Biology Direct. 2007;2. doi:10.1186/1745-6150-2-20
apa: Bazykin, G., Kondrashov, F., Brudno, M., Poliakov, A., Dubchak, I., & Kondrashov,
A. (2007). Extensive parallelism in protein evolution. Biology Direct.
BioMed Central. https://doi.org/10.1186/1745-6150-2-20
chicago: Bazykin, Georgii, Fyodor Kondrashov, Michael Brudno, Alexander Poliakov,
Inna Dubchak, and Alexey Kondrashov. “Extensive Parallelism in Protein Evolution.”
Biology Direct. BioMed Central, 2007. https://doi.org/10.1186/1745-6150-2-20.
ieee: G. Bazykin, F. Kondrashov, M. Brudno, A. Poliakov, I. Dubchak, and A. Kondrashov,
“Extensive parallelism in protein evolution,” Biology Direct, vol. 2. BioMed
Central, 2007.
ista: Bazykin G, Kondrashov F, Brudno M, Poliakov A, Dubchak I, Kondrashov A. 2007.
Extensive parallelism in protein evolution. Biology Direct. 2.
mla: Bazykin, Georgii, et al. “Extensive Parallelism in Protein Evolution.” Biology
Direct, vol. 2, BioMed Central, 2007, doi:10.1186/1745-6150-2-20.
short: G. Bazykin, F. Kondrashov, M. Brudno, A. Poliakov, I. Dubchak, A. Kondrashov,
Biology Direct 2 (2007).
date_created: 2018-12-11T11:49:07Z
date_published: 2007-08-16T00:00:00Z
date_updated: 2021-01-12T08:21:47Z
day: '16'
doi: 10.1186/1745-6150-2-20
extern: 1
intvolume: ' 2'
month: '08'
publication: Biology Direct
publication_status: published
publisher: BioMed Central
publist_id: '6745'
quality_controlled: 0
status: public
title: Extensive parallelism in protein evolution
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
volume: 2
year: '2007'
...
---
_id: '9149'
abstract:
- lang: eng
text: "The interaction of tidal currents with sea-floor topography results in the
radiation of internal gravity waves into the ocean interior. These waves are called
internal tides and their dissipation due to nonlinear wave breaking and concomitant
three-dimensional turbulence could play an important role in the mixing of the
abyssal ocean, and hence in controlling the large-scale ocean circulation.\r\nAs
part of on-going work aimed at providing a theory for the vertical distribution
of wave breaking over sea-floor topography, in this paper we investigate the instability
of internal tides in a very simple linear model that helps us to relate the formation
of unstable regions to simple features in the sea-floor topography. For two-dimensional
tides over one-dimensional topography we find that the formation of overturning
instabilities is closely linked to the singularities in the topography shape and
that it is possible to have stable waves at the sea floor and unstable waves in
the ocean interior above.\r\nFor three-dimensional tides over two-dimensional
topography there is in addition an effect of geometric focusing of wave energy
into localized regions of high wave amplitude, and we investigate this focusing
effect in simple examples. Overall, we find that the distribution of unstable
wave breaking regions can be highly non-uniform even for very simple idealized
topography shapes."
article_processing_charge: No
article_type: original
author:
- first_name: Oliver
full_name: Bühler, Oliver
last_name: Bühler
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
citation:
ama: Bühler O, Muller CJ. Instability and focusing of internal tides in the deep
ocean. Journal of Fluid Mechanics. 2007;588:1-28. doi:10.1017/s0022112007007410
apa: Bühler, O., & Muller, C. J. (2007). Instability and focusing of internal
tides in the deep ocean. Journal of Fluid Mechanics. Cambridge University
Press. https://doi.org/10.1017/s0022112007007410
chicago: Bühler, Oliver, and Caroline J Muller. “Instability and Focusing of Internal
Tides in the Deep Ocean.” Journal of Fluid Mechanics. Cambridge University
Press, 2007. https://doi.org/10.1017/s0022112007007410.
ieee: O. Bühler and C. J. Muller, “Instability and focusing of internal tides in
the deep ocean,” Journal of Fluid Mechanics, vol. 588. Cambridge University
Press, pp. 1–28, 2007.
ista: Bühler O, Muller CJ. 2007. Instability and focusing of internal tides in the
deep ocean. Journal of Fluid Mechanics. 588, 1–28.
mla: Bühler, Oliver, and Caroline J. Muller. “Instability and Focusing of Internal
Tides in the Deep Ocean.” Journal of Fluid Mechanics, vol. 588, Cambridge
University Press, 2007, pp. 1–28, doi:10.1017/s0022112007007410.
short: O. Bühler, C.J. Muller, Journal of Fluid Mechanics 588 (2007) 1–28.
date_created: 2021-02-15T14:41:45Z
date_published: 2007-10-10T00:00:00Z
date_updated: 2022-01-24T13:43:36Z
day: '10'
doi: 10.1017/s0022112007007410
extern: '1'
intvolume: ' 588'
keyword:
- mechanical engineering
- mechanics of materials
- condensed matter physics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1017/S0022112007007410
month: '10'
oa: 1
oa_version: None
page: 1-28
publication: Journal of Fluid Mechanics
publication_identifier:
issn:
- 0022-1120
- 1469-7645
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
status: public
title: Instability and focusing of internal tides in the deep ocean
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 588
year: '2007'
...
---
_id: '9487'
abstract:
- lang: eng
text: Cytosine DNA methylation is considered to be a stable epigenetic mark, but
active demethylation has been observed in both plants and animals. In Arabidopsis
thaliana, DNA glycosylases of the DEMETER (DME) family remove methylcytosines
from DNA. Demethylation by DME is necessary for genomic imprinting, and demethylation
by a related protein, REPRESSOR OF SILENCING1, prevents gene silencing in a transgenic
background. However, the extent and function of demethylation by DEMETER-LIKE
(DML) proteins in WT plants is not known. Using genome-tiling microarrays, we
mapped DNA methylation in mutant and WT plants and identified 179 loci actively
demethylated by DML enzymes. Mutations in DML genes lead to locus-specific DNA
hypermethylation. Reintroducing WT DML genes restores most loci to the normal
pattern of methylation, although at some loci, hypermethylated epialleles persist.
Of loci demethylated by DML enzymes, >80% are near or overlap genes. Genic demethylation
by DML enzymes primarily occurs at the 5′ and 3′ ends, a pattern opposite to the
overall distribution of WT DNA methylation. Our results show that demethylation
by DML DNA glycosylases edits the patterns of DNA methylation within the Arabidopsis
genome to protect genes from potentially deleterious methylation.
article_processing_charge: No
article_type: original
author:
- first_name: Jon
full_name: Penterman, Jon
last_name: Penterman
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
- first_name: Jin Hoe
full_name: Huh, Jin Hoe
last_name: Huh
- first_name: Tracy
full_name: Ballinger, Tracy
last_name: Ballinger
- first_name: Steven
full_name: Henikoff, Steven
last_name: Henikoff
- first_name: Robert L.
full_name: Fischer, Robert L.
last_name: Fischer
citation:
ama: Penterman J, Zilberman D, Huh JH, Ballinger T, Henikoff S, Fischer RL. DNA
demethylation in the Arabidopsis genome. Proceedings of the National Academy
of Sciences. 2007;104(16):6752-6757. doi:10.1073/pnas.0701861104
apa: Penterman, J., Zilberman, D., Huh, J. H., Ballinger, T., Henikoff, S., &
Fischer, R. L. (2007). DNA demethylation in the Arabidopsis genome. Proceedings
of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.0701861104
chicago: Penterman, Jon, Daniel Zilberman, Jin Hoe Huh, Tracy Ballinger, Steven
Henikoff, and Robert L. Fischer. “DNA Demethylation in the Arabidopsis Genome.”
Proceedings of the National Academy of Sciences. National Academy of Sciences,
2007. https://doi.org/10.1073/pnas.0701861104.
ieee: J. Penterman, D. Zilberman, J. H. Huh, T. Ballinger, S. Henikoff, and R. L.
Fischer, “DNA demethylation in the Arabidopsis genome,” Proceedings of the
National Academy of Sciences, vol. 104, no. 16. National Academy of Sciences,
pp. 6752–6757, 2007.
ista: Penterman J, Zilberman D, Huh JH, Ballinger T, Henikoff S, Fischer RL. 2007.
DNA demethylation in the Arabidopsis genome. Proceedings of the National Academy
of Sciences. 104(16), 6752–6757.
mla: Penterman, Jon, et al. “DNA Demethylation in the Arabidopsis Genome.” Proceedings
of the National Academy of Sciences, vol. 104, no. 16, National Academy of
Sciences, 2007, pp. 6752–57, doi:10.1073/pnas.0701861104.
short: J. Penterman, D. Zilberman, J.H. Huh, T. Ballinger, S. Henikoff, R.L. Fischer,
Proceedings of the National Academy of Sciences 104 (2007) 6752–6757.
date_created: 2021-06-07T09:38:21Z
date_published: 2007-04-17T00:00:00Z
date_updated: 2021-12-14T08:55:12Z
day: '17'
department:
- _id: DaZi
doi: 10.1073/pnas.0701861104
extern: '1'
external_id:
pmid:
- '17409185'
intvolume: ' 104'
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1073/pnas.0701861104
month: '04'
oa: 1
oa_version: Published Version
page: 6752-6757
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: DNA demethylation in the Arabidopsis genome
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 104
year: '2007'
...
---
_id: '9504'
article_processing_charge: No
author:
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
citation:
ama: Zilberman D. The Human Promoter Methylome. Vol 39. Nature Publishing
Group; 2007:442-443. doi:10.1038/ng0407-442
apa: Zilberman, D. (2007). The human promoter methylome. Nature Genetics
(Vol. 39, pp. 442–443). Nature Publishing Group. https://doi.org/10.1038/ng0407-442
chicago: Zilberman, Daniel. The Human Promoter Methylome. Nature Genetics.
Vol. 39. Nature Publishing Group, 2007. https://doi.org/10.1038/ng0407-442.
ieee: D. Zilberman, The human promoter methylome, vol. 39, no. 4. Nature
Publishing Group, 2007, pp. 442–443.
ista: Zilberman D. 2007. The human promoter methylome, Nature Publishing Group,p.
mla: Zilberman, Daniel. “The Human Promoter Methylome.” Nature Genetics,
vol. 39, no. 4, Nature Publishing Group, 2007, pp. 442–43, doi:10.1038/ng0407-442.
short: D. Zilberman, The Human Promoter Methylome, Nature Publishing Group, 2007.
date_created: 2021-06-07T12:08:24Z
date_published: 2007-04-01T00:00:00Z
date_updated: 2021-12-14T08:55:46Z
day: '01'
department:
- _id: DaZi
doi: 10.1038/ng0407-442
extern: '1'
external_id:
pmid:
- '17392803'
intvolume: ' 39'
issue: '4'
language:
- iso: eng
month: '04'
oa_version: None
page: 442-443
pmid: 1
publication: Nature Genetics
publication_identifier:
eissn:
- 1546-1718
issn:
- 1061-4036
publication_status: published
publisher: Nature Publishing Group
quality_controlled: '1'
status: public
title: The human promoter methylome
type: other_academic_publication
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 39
year: '2007'
...
---
_id: '9524'
abstract:
- lang: eng
text: Cytosine methylation is the most common covalent modification of DNA in eukaryotes.
DNA methylation has an important role in many aspects of biology, including development
and disease. Methylation can be detected using bisulfite conversion, methylation-sensitive
restriction enzymes, methyl-binding proteins and anti-methylcytosine antibodies.
Combining these techniques with DNA microarrays and high-throughput sequencing
has made the mapping of DNA methylation feasible on a genome-wide scale. Here
we discuss recent developments and future directions for identifying and mapping
methylation, in an effort to help colleagues to identify the approaches that best
serve their research interests.
article_processing_charge: No
article_type: review
author:
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
- first_name: Steven
full_name: Henikoff, Steven
last_name: Henikoff
citation:
ama: Zilberman D, Henikoff S. Genome-wide analysis of DNA methylation patterns.
Development. 2007;134(22):3959-3965. doi:10.1242/dev.001131
apa: Zilberman, D., & Henikoff, S. (2007). Genome-wide analysis of DNA methylation
patterns. Development. The Company of Biologists. https://doi.org/10.1242/dev.001131
chicago: Zilberman, Daniel, and Steven Henikoff. “Genome-Wide Analysis of DNA Methylation
Patterns.” Development. The Company of Biologists, 2007. https://doi.org/10.1242/dev.001131.
ieee: D. Zilberman and S. Henikoff, “Genome-wide analysis of DNA methylation patterns,”
Development, vol. 134, no. 22. The Company of Biologists, pp. 3959–3965,
2007.
ista: Zilberman D, Henikoff S. 2007. Genome-wide analysis of DNA methylation patterns.
Development. 134(22), 3959–3965.
mla: Zilberman, Daniel, and Steven Henikoff. “Genome-Wide Analysis of DNA Methylation
Patterns.” Development, vol. 134, no. 22, The Company of Biologists, 2007,
pp. 3959–65, doi:10.1242/dev.001131.
short: D. Zilberman, S. Henikoff, Development 134 (2007) 3959–3965.
date_created: 2021-06-08T06:29:50Z
date_published: 2007-11-15T00:00:00Z
date_updated: 2021-12-14T08:57:58Z
day: '15'
department:
- _id: DaZi
doi: 10.1242/dev.001131
extern: '1'
external_id:
pmid:
- '17928417'
intvolume: ' 134'
issue: '22'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1242/dev.001131
month: '11'
oa: 1
oa_version: Published Version
page: 3959-3965
pmid: 1
publication: Development
publication_identifier:
eissn:
- 1477-9129
issn:
- 0950-1991
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genome-wide analysis of DNA methylation patterns
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 134
year: '2007'
...
---
_id: '1035'
abstract:
- lang: eng
text: We explore the rich internal structure of Cs2 Feshbach molecules. Pure ultracold
molecular samples are prepared in a CO2 -laser trap, and a multitude of weakly
bound states is populated by elaborate magnetic-field ramping techniques. Our
methods use different Feshbach resonances as input ports and various internal
level crossings for controlled state transfer. We populate higher partial-wave
states of up to eight units of rotational angular momentum (l -wave states). We
investigate the molecular structure by measurements of the magnetic moments for
various states. Avoided level crossings between different molecular states are
characterized through the changes in magnetic moment and by a Landau-Zener tunneling
method. Based on microwave spectroscopy, we present a precise measurement of the
magnetic-field-dependent binding energy of the weakly bound s -wave state that
is responsible for the large background scattering length of Cs. This state is
of particular interest because of its quantum-halo character.
acknowledgement: The authors thank E. Tiesinga, P. Julienne, and C. Williams for providing
invaluable theoretical input and J. Hutson and A. Simoni for helpful discussions.
The authors acknowledge support by the Austrian Science Fund (FWF) within SFB 15
(project part 16) and by the European Union within the Cold Molecules TMR Network
under Contract No. HPRN-CT-2002-00290. One of the authors (M.M.) acknowledges support
within the Ph.D. program DOC of the Austrian Academy of Sciences, and two of the
authors (F.F., C.C.) acknowledge support within the Lise Meitner program of the
FWF. One of the authors (S.K.) is supported by the European Community, Marie Curie
Intra-European program.
article_processing_charge: No
author:
- first_name: Michael
full_name: Mark, Michael
last_name: Mark
- first_name: Francesca
full_name: Ferlaino, Francesca
last_name: Ferlaino
- first_name: Steven
full_name: Knoop, Steven
last_name: Knoop
- first_name: Johann G
full_name: Danzl, Johann G
id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
last_name: Danzl
orcid: 0000-0001-8559-3973
- first_name: Tobias
full_name: Kraemer, Tobias
last_name: Kraemer
- first_name: Cheng
full_name: Chin, Cheng
last_name: Chin
- first_name: Hanns
full_name: Nägerl, Hanns
last_name: Nägerl
- first_name: Rudolf
full_name: Grimm, Rudolf
last_name: Grimm
citation:
ama: Mark M, Ferlaino F, Knoop S, et al. Spectroscopy of ultracold trapped cesium
Feshbach molecules. Physical Review A - Atomic, Molecular, and Optical Physics.
2007;76(4). doi:10.1103/PhysRevA.76.042514
apa: Mark, M., Ferlaino, F., Knoop, S., Danzl, J. G., Kraemer, T., Chin, C., … Grimm,
R. (2007). Spectroscopy of ultracold trapped cesium Feshbach molecules. Physical
Review A - Atomic, Molecular, and Optical Physics. American Physical Society.
https://doi.org/10.1103/PhysRevA.76.042514
chicago: Mark, Michael, Francesca Ferlaino, Steven Knoop, Johann G Danzl, Tobias
Kraemer, Cheng Chin, Hanns Nägerl, and Rudolf Grimm. “Spectroscopy of Ultracold
Trapped Cesium Feshbach Molecules.” Physical Review A - Atomic, Molecular,
and Optical Physics. American Physical Society, 2007. https://doi.org/10.1103/PhysRevA.76.042514.
ieee: M. Mark et al., “Spectroscopy of ultracold trapped cesium Feshbach
molecules,” Physical Review A - Atomic, Molecular, and Optical Physics,
vol. 76, no. 4. American Physical Society, 2007.
ista: Mark M, Ferlaino F, Knoop S, Danzl JG, Kraemer T, Chin C, Nägerl H, Grimm
R. 2007. Spectroscopy of ultracold trapped cesium Feshbach molecules. Physical
Review A - Atomic, Molecular, and Optical Physics. 76(4).
mla: Mark, Michael, et al. “Spectroscopy of Ultracold Trapped Cesium Feshbach Molecules.”
Physical Review A - Atomic, Molecular, and Optical Physics, vol. 76, no.
4, American Physical Society, 2007, doi:10.1103/PhysRevA.76.042514.
short: M. Mark, F. Ferlaino, S. Knoop, J.G. Danzl, T. Kraemer, C. Chin, H. Nägerl,
R. Grimm, Physical Review A - Atomic, Molecular, and Optical Physics 76 (2007).
date_created: 2018-12-11T11:49:48Z
date_published: 2007-10-25T00:00:00Z
date_updated: 2021-01-12T06:47:49Z
day: '25'
doi: 10.1103/PhysRevA.76.042514
extern: '1'
intvolume: ' 76'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/0706.1041
month: '10'
oa: 1
oa_version: None
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '6354'
status: public
title: Spectroscopy of ultracold trapped cesium Feshbach molecules
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 76
year: '2007'
...
---
_id: '11884'
abstract:
- lang: eng
text: About 20% of the world's population uses the Web, and a large majority thereof
uses Web search engines to find information. As a result, many Web researchers
are devoting much effort to improving the speed and capability of search technology.
article_processing_charge: No
article_type: review
author:
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
citation:
ama: Henzinger MH. Search technologies for the internet. Science. 2007;317(5837):468-471.
doi:10.1126/science.1126557
apa: Henzinger, M. H. (2007). Search technologies for the internet. Science.
American Association for the Advancement of Science. https://doi.org/10.1126/science.1126557
chicago: Henzinger, Monika H. “Search Technologies for the Internet.” Science.
American Association for the Advancement of Science, 2007. https://doi.org/10.1126/science.1126557.
ieee: M. H. Henzinger, “Search technologies for the internet,” Science, vol.
317, no. 5837. American Association for the Advancement of Science, pp. 468–471,
2007.
ista: Henzinger MH. 2007. Search technologies for the internet. Science. 317(5837),
468–471.
mla: Henzinger, Monika H. “Search Technologies for the Internet.” Science,
vol. 317, no. 5837, American Association for the Advancement of Science, 2007,
pp. 468–71, doi:10.1126/science.1126557.
short: M.H. Henzinger, Science 317 (2007) 468–471.
date_created: 2022-08-17T07:30:07Z
date_published: 2007-07-27T00:00:00Z
date_updated: 2023-02-17T14:07:49Z
day: '27'
doi: 10.1126/science.1126557
extern: '1'
external_id:
pmid:
- '17656714'
intvolume: ' 317'
issue: '5837'
language:
- iso: eng
month: '07'
oa_version: None
page: 468-471
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
issn:
- 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Search technologies for the internet
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 317
year: '2007'
...
---
_id: '11924'
abstract:
- lang: eng
text: 'How much can smart combinatorial algorithms improve web search engines? To
address this question we will describe three algorithms that have had a positive
impact on web search engines: The PageRank algorithm, algorithms for finding near-duplicate
web pages, and algorithms for index server loadbalancing.'
article_processing_charge: No
author:
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
citation:
ama: 'Henzinger MH. Combinatorial algorithms for web search engines: three success
stories. In: 18th Annual ACM-SIAM Symposium on Discrete Algorithms. Society
for Industrial & Applied Mathematics; 2007:1022-1026.'
apa: 'Henzinger, M. H. (2007). Combinatorial algorithms for web search engines:
three success stories. In 18th Annual ACM-SIAM Symposium on Discrete Algorithms
(pp. 1022–1026). New Orleans, LA, United States: Society for Industrial &
Applied Mathematics.'
chicago: 'Henzinger, Monika H. “Combinatorial Algorithms for Web Search Engines:
Three Success Stories.” In 18th Annual ACM-SIAM Symposium on Discrete Algorithms,
1022–26. Society for Industrial & Applied Mathematics, 2007.'
ieee: 'M. H. Henzinger, “Combinatorial algorithms for web search engines: three
success stories,” in 18th Annual ACM-SIAM Symposium on Discrete Algorithms,
New Orleans, LA, United States, 2007, pp. 1022–1026.'
ista: 'Henzinger MH. 2007. Combinatorial algorithms for web search engines: three
success stories. 18th Annual ACM-SIAM Symposium on Discrete Algorithms. SODA:
Symposium on Discrete Algorithms, 1022–1026.'
mla: 'Henzinger, Monika H. “Combinatorial Algorithms for Web Search Engines: Three
Success Stories.” 18th Annual ACM-SIAM Symposium on Discrete Algorithms,
Society for Industrial & Applied Mathematics, 2007, pp. 1022–26.'
short: M.H. Henzinger, in:, 18th Annual ACM-SIAM Symposium on Discrete Algorithms,
Society for Industrial & Applied Mathematics, 2007, pp. 1022–1026.
conference:
end_date: 2007-01-09
location: New Orleans, LA, United States
name: 'SODA: Symposium on Discrete Algorithms'
start_date: 2007-01-07
date_created: 2022-08-18T12:37:03Z
date_published: 2007-01-01T00:00:00Z
date_updated: 2023-02-17T12:06:29Z
day: '01'
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 1022-1026
publication: 18th Annual ACM-SIAM Symposium on Discrete Algorithms
publication_identifier:
isbn:
- '9780898716245'
publication_status: published
publisher: Society for Industrial & Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Combinatorial algorithms for web search engines: three success stories'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2007'
...
---
_id: '12201'
abstract:
- lang: eng
text: The development of plant lateral organs is interesting because, although many
of the same genes seem to be involved in the early growth of primordia, completely
different gene combinations are required for the complete development of organs
such as leaves and stamens. Thus, the genes common to the development of most
organs, which generally form and polarize the primordial ‘envelope’, must at some
stage interact with those that ‘install’ the functional content of the organ –
in the case of the stamen, the four microsporangia. Although distinct genetic
pathways of organ initiation, polarity establishment and setting up the reproductive
cell line can readily be recognized, they do not occur sequentially. Rather, they
are activated early and run in parallel. There is evidence for continuing crosstalk
between these pathways.
acknowledgement: X.F. holds a Clarendon Scholarship from the University of Oxford.
We thank Angela Hay and Jill Harrison for helpful advice and discussion.
article_processing_charge: No
article_type: original
author:
- first_name: Xiaoqi
full_name: Feng, Xiaoqi
id: e0164712-22ee-11ed-b12a-d80fcdf35958
last_name: Feng
orcid: 0000-0002-4008-1234
- first_name: Hugh G.
full_name: Dickinson, Hugh G.
last_name: Dickinson
citation:
ama: Feng X, Dickinson HG. Packaging the male germline in plants. Trends in Genetics.
2007;23(10):503-510. doi:10.1016/j.tig.2007.08.005
apa: Feng, X., & Dickinson, H. G. (2007). Packaging the male germline in plants.
Trends in Genetics. Elsevier BV. https://doi.org/10.1016/j.tig.2007.08.005
chicago: Feng, Xiaoqi, and Hugh G. Dickinson. “Packaging the Male Germline in Plants.”
Trends in Genetics. Elsevier BV, 2007. https://doi.org/10.1016/j.tig.2007.08.005.
ieee: X. Feng and H. G. Dickinson, “Packaging the male germline in plants,” Trends
in Genetics, vol. 23, no. 10. Elsevier BV, pp. 503–510, 2007.
ista: Feng X, Dickinson HG. 2007. Packaging the male germline in plants. Trends
in Genetics. 23(10), 503–510.
mla: Feng, Xiaoqi, and Hugh G. Dickinson. “Packaging the Male Germline in Plants.”
Trends in Genetics, vol. 23, no. 10, Elsevier BV, 2007, pp. 503–10, doi:10.1016/j.tig.2007.08.005.
short: X. Feng, H.G. Dickinson, Trends in Genetics 23 (2007) 503–510.
date_created: 2023-01-16T09:22:44Z
date_published: 2007-10-01T00:00:00Z
date_updated: 2023-05-08T10:58:47Z
department:
- _id: XiFe
doi: 10.1016/j.tig.2007.08.005
extern: '1'
external_id:
pmid:
- '17825943'
intvolume: ' 23'
issue: '10'
keyword:
- Genetics
language:
- iso: eng
month: '10'
oa_version: None
page: 503-510
pmid: 1
publication: Trends in Genetics
publication_identifier:
issn:
- 0168-9525
publication_status: published
publisher: Elsevier BV
quality_controlled: '1'
scopus_import: '1'
status: public
title: Packaging the male germline in plants
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2007'
...
---
_id: '128'
abstract:
- lang: eng
text: 'A 671 nm diode laser with a mode-hop-free tuning range of 40 GHz is described.
This long tuning range is achieved by simultaneously ramping the external cavity
length with the laser injection current. The laser output pointing remains fixed,
independent of its frequency because of the cover slip cavity design. This system
is simple, economical, robust, and easy to use for spectroscopy, as we demonstrate
with lithium vapor and lithium atom beam experiments. '
acknowledgement: "National Science Foundation\r\nThis work was supported with NSF
Grant No. PHY-0653623. We thank Dr. W. Bickel and Dr. J. Jones for diagnostic equipment,
K. Guerin for assistance with mechanical drawings, and M. Parker of Rincon Research
Inc. for optics components."
article_number: '106108'
arxiv: 1
author:
- first_name: Adra
full_name: Carr, Adra
last_name: Carr
- first_name: Yancey
full_name: Serchest, Yancey
last_name: Serchest
- first_name: Scott R
full_name: Waitukaitis, Scott R
id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
last_name: Waitukaitis
orcid: 0000-0002-2299-3176
- first_name: John
full_name: Perreault, John
last_name: Perreault
- first_name: Vincent
full_name: Lonij, Vincent
last_name: Lonij
- first_name: Alexander
full_name: Cronin, Alexander
last_name: Cronin
citation:
ama: Carr A, Serchest Y, Waitukaitis SR, Perreault J, Lonij V, Cronin A. Cover slip
external cavity diode laser. Review of Scientific Instruments. 2007;78(10).
doi:10.1063/1.2801006
apa: Carr, A., Serchest, Y., Waitukaitis, S. R., Perreault, J., Lonij, V., &
Cronin, A. (2007). Cover slip external cavity diode laser. Review of Scientific
Instruments. American Institute of Physics. https://doi.org/10.1063/1.2801006
chicago: Carr, Adra, Yancey Serchest, Scott R Waitukaitis, John Perreault, Vincent
Lonij, and Alexander Cronin. “Cover Slip External Cavity Diode Laser.” Review
of Scientific Instruments. American Institute of Physics, 2007. https://doi.org/10.1063/1.2801006.
ieee: A. Carr, Y. Serchest, S. R. Waitukaitis, J. Perreault, V. Lonij, and A. Cronin,
“Cover slip external cavity diode laser,” Review of Scientific Instruments,
vol. 78, no. 10. American Institute of Physics, 2007.
ista: Carr A, Serchest Y, Waitukaitis SR, Perreault J, Lonij V, Cronin A. 2007.
Cover slip external cavity diode laser. Review of Scientific Instruments. 78(10),
106108.
mla: Carr, Adra, et al. “Cover Slip External Cavity Diode Laser.” Review of Scientific
Instruments, vol. 78, no. 10, 106108, American Institute of Physics, 2007,
doi:10.1063/1.2801006.
short: A. Carr, Y. Serchest, S.R. Waitukaitis, J. Perreault, V. Lonij, A. Cronin,
Review of Scientific Instruments 78 (2007).
date_created: 2018-12-11T11:44:46Z
date_published: 2007-10-29T00:00:00Z
date_updated: 2021-01-12T06:49:35Z
day: '29'
doi: 10.1063/1.2801006
extern: '1'
external_id:
arxiv:
- '0708.0014'
intvolume: ' 78'
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/0708.0014
month: '10'
oa: 1
oa_version: Preprint
publication: Review of Scientific Instruments
publication_status: published
publisher: American Institute of Physics
publist_id: '7925'
quality_controlled: '1'
status: public
title: Cover slip external cavity diode laser
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 78
year: '2007'
...
---
_id: '1297'
abstract:
- lang: eng
text: In flies, the large tangential cells of the lobula plate represent an important
processing center for visual navigation based on optic flow. Although the visual
response properties of these cells have been well studied in blowflies, information
on their synaptic organization is mostly lacking. Here we study the distribution
of presynaptic release and postsynaptic inhibitory sites in the same set of cells
in Drosophila melanogaster. By making use of transgenic tools and immunohistochemistry,
our results suggest that HS and VS cells of Drosophila express γ-aminobutyric
acid (GABA) receptors in their dendritic region within the lobula plate, thus
being postsynaptic to inhibitory input there. At their axon terminals in the protocerebrum,
both cell types express synaptobrevin, suggesting the presence of presynaptic
specializations there. HS- and VS-cell terminals additionally show evidence for
postsynaptic GABAergic input, superimposed on this synaptic polarity. Our findings
are in line with the general circuit for visual motion detection and receptive
field properties as postulated from electrophysiological and optical recordings
in blowflies, suggesting a similar functional organization of lobula plate tangential
cells in the two species.
author:
- first_name: Shamprasad
full_name: Raghu, Shamprasad V
last_name: Raghu
- first_name: Maximilian A
full_name: Maximilian Jösch
id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
last_name: Jösch
orcid: 0000-0002-3937-1330
- first_name: Alexander
full_name: Borst, Alexander
last_name: Borst
- first_name: Dierk
full_name: Reiff, Dierk F
last_name: Reiff
citation:
ama: 'Raghu S, Jösch MA, Borst A, Reiff D. Synaptic organization of lobula plate
tangential cells in Drosophila: γ-aminobutyric acid receptors and chemical release
sites. Journal of Comparative Neurology. 2007;502(4):598-610. doi:10.1002/cne.21319'
apa: 'Raghu, S., Jösch, M. A., Borst, A., & Reiff, D. (2007). Synaptic organization
of lobula plate tangential cells in Drosophila: γ-aminobutyric acid receptors
and chemical release sites. Journal of Comparative Neurology. Wiley-Blackwell.
https://doi.org/10.1002/cne.21319'
chicago: 'Raghu, Shamprasad, Maximilian A Jösch, Alexander Borst, and Dierk Reiff.
“Synaptic Organization of Lobula Plate Tangential Cells in Drosophila: γ-Aminobutyric
Acid Receptors and Chemical Release Sites.” Journal of Comparative Neurology.
Wiley-Blackwell, 2007. https://doi.org/10.1002/cne.21319.'
ieee: 'S. Raghu, M. A. Jösch, A. Borst, and D. Reiff, “Synaptic organization of
lobula plate tangential cells in Drosophila: γ-aminobutyric acid receptors and
chemical release sites,” Journal of Comparative Neurology, vol. 502, no.
4. Wiley-Blackwell, pp. 598–610, 2007.'
ista: 'Raghu S, Jösch MA, Borst A, Reiff D. 2007. Synaptic organization of lobula
plate tangential cells in Drosophila: γ-aminobutyric acid receptors and chemical
release sites. Journal of Comparative Neurology. 502(4), 598–610.'
mla: 'Raghu, Shamprasad, et al. “Synaptic Organization of Lobula Plate Tangential
Cells in Drosophila: γ-Aminobutyric Acid Receptors and Chemical Release Sites.”
Journal of Comparative Neurology, vol. 502, no. 4, Wiley-Blackwell, 2007,
pp. 598–610, doi:10.1002/cne.21319.'
short: S. Raghu, M.A. Jösch, A. Borst, D. Reiff, Journal of Comparative Neurology
502 (2007) 598–610.
date_created: 2018-12-11T11:51:13Z
date_published: 2007-06-01T00:00:00Z
date_updated: 2021-01-12T06:49:42Z
day: '01'
doi: 10.1002/cne.21319
extern: 1
intvolume: ' 502'
issue: '4'
month: '06'
page: 598 - 610
publication: Journal of Comparative Neurology
publication_status: published
publisher: Wiley-Blackwell
publist_id: '5974'
quality_controlled: 0
status: public
title: 'Synaptic organization of lobula plate tangential cells in Drosophila: γ-aminobutyric
acid receptors and chemical release sites'
type: journal_article
volume: 502
year: '2007'
...
---
_id: '3411'
abstract:
- lang: eng
text: Mechanical single-molecule techniques offer exciting possibilities to investigate
protein folding and stability in native environments at submolecular resolution.
By applying a free-energy reconstruction procedure developed by Hummer and Szabo,
which is based on a statistical theorem introduced by Jarzynski, we determined
the unfolding free energy of the membrane proteins bacteriorhodopsin (BR), halorhodopsin,
and the sodium-proton antiporter NhaA. The calculated energies ranged from 290.5kcal/mol
for BR to 485.5kcal/mol for NhaA. For the remarkably stable BR, the equilibrium
unfolding free energy was independent of pulling rate and temperature ranging
between 18 and 42°C. Our experiments also revealed heterogeneous energetic properties
in individual transmembrane helices. In halorhodopsin, the stabilization of a
short helical segment yielded a characteristic signature in the energy profile.
In NhaA, a pronounced peak was observed at a functionally important site in the
protein. Since a large variety of single- and multispan membrane proteins can
be tackled in mechanical unfolding experiments, our approach provides a basis
for systematically elucidating energetic properties of membrane proteins with
the resolution of individual secondary-structure elements.
author:
- first_name: Johannes
full_name: Preiner, Johannes
last_name: Preiner
- first_name: Harald L
full_name: Harald Janovjak
id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
last_name: Janovjak
orcid: 0000-0002-8023-9315
- first_name: Christian
full_name: Rankl, Christian
last_name: Rankl
- first_name: Helene
full_name: Knaus, Helene
last_name: Knaus
- first_name: David
full_name: Cisneros, David A
last_name: Cisneros
- first_name: Alexej
full_name: Kedrov, Alexej
last_name: Kedrov
- first_name: Ferry
full_name: Kienberger, Ferry
last_name: Kienberger
- first_name: Daniel
full_name: Mueller, Daniel J
last_name: Mueller
- first_name: Peter
full_name: Hinterdorfer, Peter
last_name: Hinterdorfer
citation:
ama: Preiner J, Janovjak HL, Rankl C, et al. Free energy of membrane protein unfolding
derived from single-molecule force measurements. Biophysical Journal. 2007;93(3):930-937.
doi:10.1529/biophysj.106.096982
apa: Preiner, J., Janovjak, H. L., Rankl, C., Knaus, H., Cisneros, D., Kedrov, A.,
… Hinterdorfer, P. (2007). Free energy of membrane protein unfolding derived from
single-molecule force measurements. Biophysical Journal. Biophysical Society.
https://doi.org/10.1529/biophysj.106.096982
chicago: Preiner, Johannes, Harald L Janovjak, Christian Rankl, Helene Knaus, David
Cisneros, Alexej Kedrov, Ferry Kienberger, Daniel Mueller, and Peter Hinterdorfer.
“Free Energy of Membrane Protein Unfolding Derived from Single-Molecule Force
Measurements.” Biophysical Journal. Biophysical Society, 2007. https://doi.org/10.1529/biophysj.106.096982.
ieee: J. Preiner et al., “Free energy of membrane protein unfolding derived
from single-molecule force measurements,” Biophysical Journal, vol. 93,
no. 3. Biophysical Society, pp. 930–937, 2007.
ista: Preiner J, Janovjak HL, Rankl C, Knaus H, Cisneros D, Kedrov A, Kienberger
F, Mueller D, Hinterdorfer P. 2007. Free energy of membrane protein unfolding
derived from single-molecule force measurements. Biophysical Journal. 93(3), 930–937.
mla: Preiner, Johannes, et al. “Free Energy of Membrane Protein Unfolding Derived
from Single-Molecule Force Measurements.” Biophysical Journal, vol. 93,
no. 3, Biophysical Society, 2007, pp. 930–37, doi:10.1529/biophysj.106.096982.
short: J. Preiner, H.L. Janovjak, C. Rankl, H. Knaus, D. Cisneros, A. Kedrov, F.
Kienberger, D. Mueller, P. Hinterdorfer, Biophysical Journal 93 (2007) 930–937.
date_created: 2018-12-11T12:03:11Z
date_published: 2007-08-01T00:00:00Z
date_updated: 2021-01-12T07:43:18Z
day: '01'
doi: 10.1529/biophysj.106.096982
extern: 1
intvolume: ' 93'
issue: '3'
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1913163/
month: '08'
oa: 1
page: 930 - 937
publication: Biophysical Journal
publication_status: published
publisher: Biophysical Society
publist_id: '2990'
quality_controlled: 0
status: public
title: Free energy of membrane protein unfolding derived from single-molecule force
measurements
type: journal_article
volume: 93
year: '2007'
...
---
_id: '3412'
abstract:
- lang: eng
text: |-
Molecular interactions are the basic language of biological processes.
They establish the forces interacting between the building blocks of
proteins and other macromolecules, thus determining their functional
roles. Because molecular interactions trigger virtually every
biological process, approaches to decipher their language are needed.
Single-molecule force spectroscopy (SMFS) has been used to detect
and characterize different types of molecular interactions that occur
between and within native membrane proteins. The first experiments
detected and localized molecular interactions that stabilized
membrane proteins, including how these interactions were established
during folding of α-helical secondary structure elements into
the native protein and how they changed with oligomerization, temperature,
and mutations. SMFS also enables investigators to detect
and locate molecular interactions established during ligand and inhibitor
binding. These exciting applications provide opportunities
for studying the molecular forces of life. Further developments will
elucidate the origins of molecular interactions encoded in their lifetimes,
interaction ranges, interplay, and dynamics characteristic of biological systems.
author:
- first_name: Alexej
full_name: Kedrov, Alexej
last_name: Kedrov
- first_name: Harald L
full_name: Harald Janovjak
id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
last_name: Janovjak
orcid: 0000-0002-8023-9315
- first_name: Tanuj
full_name: Sapra, Tanuj K
last_name: Sapra
- first_name: Daniel
full_name: Mueller, Daniel J
last_name: Mueller
citation:
ama: Kedrov A, Janovjak HL, Sapra T, Mueller D. Deciphering molecular interactions
of native membrane proteins by single-molecule force spectroscopy. Annual Review
of Biophysics. 2007;36:233-260. doi:10.1146/annurev.biophys.36.040306.132640
apa: Kedrov, A., Janovjak, H. L., Sapra, T., & Mueller, D. (2007). Deciphering
molecular interactions of native membrane proteins by single-molecule force spectroscopy.
Annual Review of Biophysics. Annual Reviews. https://doi.org/10.1146/annurev.biophys.36.040306.132640
chicago: Kedrov, Alexej, Harald L Janovjak, Tanuj Sapra, and Daniel Mueller. “Deciphering
Molecular Interactions of Native Membrane Proteins by Single-Molecule Force Spectroscopy.”
Annual Review of Biophysics. Annual Reviews, 2007. https://doi.org/10.1146/annurev.biophys.36.040306.132640.
ieee: A. Kedrov, H. L. Janovjak, T. Sapra, and D. Mueller, “Deciphering molecular
interactions of native membrane proteins by single-molecule force spectroscopy,”
Annual Review of Biophysics, vol. 36. Annual Reviews, pp. 233–260, 2007.
ista: Kedrov A, Janovjak HL, Sapra T, Mueller D. 2007. Deciphering molecular interactions
of native membrane proteins by single-molecule force spectroscopy. Annual Review
of Biophysics. 36, 233–260.
mla: Kedrov, Alexej, et al. “Deciphering Molecular Interactions of Native Membrane
Proteins by Single-Molecule Force Spectroscopy.” Annual Review of Biophysics,
vol. 36, Annual Reviews, 2007, pp. 233–60, doi:10.1146/annurev.biophys.36.040306.132640.
short: A. Kedrov, H.L. Janovjak, T. Sapra, D. Mueller, Annual Review of Biophysics
36 (2007) 233–260.
date_created: 2018-12-11T12:03:11Z
date_published: 2007-06-01T00:00:00Z
date_updated: 2019-04-26T07:22:27Z
day: '01'
doi: 10.1146/annurev.biophys.36.040306.132640
extern: 1
intvolume: ' 36'
month: '06'
page: 233 - 260
publication: Annual Review of Biophysics
publication_status: published
publisher: Annual Reviews
publist_id: '2989'
quality_controlled: 0
status: public
title: Deciphering molecular interactions of native membrane proteins by single-molecule
force spectroscopy
type: review
volume: 36
year: '2007'
...
---
_id: '3427'
abstract:
- lang: eng
text: "We present a general theoretical framework to discuss mechanisms of morphogen
transport and gradient formation in a cell layer. Trafficking events on the cellular
scale lead to transport on larger scales. We discuss in particular the case of
transcytosis where morphogens undergo repeated rounds of internalization into
cells and recycling. Based on a description on the cellular scale, we derive effective
nonlinear transport equations in one and two dimensions which are valid on larger
scales. We derive analytic expressions for the concentration dependence of the
effective diffusion coefficient and the effective degradation rate. We discuss
the effects of a directional bias on morphogen transport and those of the coupling
of the morphogen and receptor kinetics. Furthermore, we discuss general properties
of cellular transport processes such as the robustness of gradients and relate
our results to recent experiments on the morphogen Decapentaplegic (Dpp) that
acts in the wing disk of the fruit fly Drosophila.\r\n© 2007 The American Physical
Society"
article_processing_charge: No
arxiv: 1
author:
- first_name: Mark Tobias
full_name: Bollenbach, Mark Tobias
id: 3E6DB97A-F248-11E8-B48F-1D18A9856A87
last_name: Bollenbach
orcid: 0000-0003-4398-476X
- first_name: Karsten
full_name: Kruse, Karsten
last_name: Kruse
- first_name: Periklis
full_name: Pantazis, Periklis
last_name: Pantazis
- first_name: Marcos
full_name: Gonzalez Gaitan, Marcos
last_name: Gonzalez Gaitan
- first_name: Frank
full_name: Julicher, Frank
last_name: Julicher
citation:
ama: Bollenbach MT, Kruse K, Pantazis P, Gonzalez Gaitan M, Julicher F. Morphogen
transport in epithelia. Physical Review E Statistical Nonlinear and Soft Matter
Physics. 2007;75(1). doi:10.1103/PhysRevE.75.011901
apa: Bollenbach, M. T., Kruse, K., Pantazis, P., Gonzalez Gaitan, M., & Julicher,
F. (2007). Morphogen transport in epithelia. Physical Review E Statistical
Nonlinear and Soft Matter Physics. American Institute of Physics. https://doi.org/10.1103/PhysRevE.75.011901
chicago: Bollenbach, Mark Tobias, Karsten Kruse, Periklis Pantazis, Marcos Gonzalez
Gaitan, and Frank Julicher. “Morphogen Transport in Epithelia.” Physical Review
E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics,
2007. https://doi.org/10.1103/PhysRevE.75.011901.
ieee: M. T. Bollenbach, K. Kruse, P. Pantazis, M. Gonzalez Gaitan, and F. Julicher,
“Morphogen transport in epithelia,” Physical Review E Statistical Nonlinear
and Soft Matter Physics, vol. 75, no. 1. American Institute of Physics, 2007.
ista: Bollenbach MT, Kruse K, Pantazis P, Gonzalez Gaitan M, Julicher F. 2007. Morphogen
transport in epithelia. Physical Review E Statistical Nonlinear and Soft Matter
Physics. 75(1).
mla: Bollenbach, Mark Tobias, et al. “Morphogen Transport in Epithelia.” Physical
Review E Statistical Nonlinear and Soft Matter Physics, vol. 75, no. 1, American
Institute of Physics, 2007, doi:10.1103/PhysRevE.75.011901.
short: M.T. Bollenbach, K. Kruse, P. Pantazis, M. Gonzalez Gaitan, F. Julicher,
Physical Review E Statistical Nonlinear and Soft Matter Physics 75 (2007).
date_created: 2018-12-11T12:03:16Z
date_published: 2007-01-01T00:00:00Z
date_updated: 2021-01-12T07:43:24Z
day: '01'
doi: 10.1103/PhysRevE.75.011901
extern: '1'
external_id:
arxiv:
- q-bio/0609011v1
intvolume: ' 75'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/q-bio/0609011v1
month: '01'
oa: 1
oa_version: Preprint
publication: Physical Review E Statistical Nonlinear and Soft Matter Physics
publication_status: published
publisher: American Institute of Physics
publist_id: '2974'
status: public
title: Morphogen transport in epithelia
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 75
year: '2007'
...
---
_id: '3432'
abstract:
- lang: eng
text: Evolution has left its signature on the molecules and morphology of living
organisms. Ancestral reconstruction offers an excellent tool for understanding
the process of evolution using comparative information. Methods for ancestral
reconstruction have generally focused on reconstructing the ancestral states at
the internal nodes of a phylogeny. Often, we are not interested in particular
nodes of the phylogeny but the whole history of a character. This chapter focuses
on a Bayesian method for estimating these histories, or mutational paths, on phylogenies.
Mutational path methods differ most notably from other approaches in their ability
to estimate not only the ancestral states at the internal nodes of a phylogeny,
but also the order and timing of mutational changes across the phylogeny. The
chapter provides a concise introduction to the statistical tools needed for sampling
mutational paths on a phylogeny.
author:
- first_name: Jonathan P
full_name: Jonathan Bollback
id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
last_name: Bollback
orcid: 0000-0002-4624-4612
- first_name: Paul
full_name: Gardner, Paul P
last_name: Gardner
- first_name: Rasmus
full_name: Nielsen, Rasmus
last_name: Nielsen
citation:
ama: 'Bollback JP, Gardner P, Nielsen R. Estimating the history of mutations on
a phylogeny. In: Liberles D, ed. Ancestral Sequence Reconstruction. Oxford
University Press; 2007:69-79. doi:10.1093/acprof:oso/9780199299188.003.0006'
apa: Bollback, J. P., Gardner, P., & Nielsen, R. (2007). Estimating the history
of mutations on a phylogeny. In D. Liberles (Ed.), Ancestral Sequence Reconstruction
(pp. 69–79). Oxford University Press. https://doi.org/10.1093/acprof:oso/9780199299188.003.0006
chicago: Bollback, Jonathan P, Paul Gardner, and Rasmus Nielsen. “Estimating the
History of Mutations on a Phylogeny.” In Ancestral Sequence Reconstruction,
edited by David Liberles, 69–79. Oxford University Press, 2007. https://doi.org/10.1093/acprof:oso/9780199299188.003.0006.
ieee: J. P. Bollback, P. Gardner, and R. Nielsen, “Estimating the history of mutations
on a phylogeny,” in Ancestral Sequence Reconstruction, D. Liberles, Ed.
Oxford University Press, 2007, pp. 69–79.
ista: 'Bollback JP, Gardner P, Nielsen R. 2007.Estimating the history of mutations
on a phylogeny. In: Ancestral Sequence Reconstruction. , 69–79.'
mla: Bollback, Jonathan P., et al. “Estimating the History of Mutations on a Phylogeny.”
Ancestral Sequence Reconstruction, edited by David Liberles, Oxford University
Press, 2007, pp. 69–79, doi:10.1093/acprof:oso/9780199299188.003.0006.
short: J.P. Bollback, P. Gardner, R. Nielsen, in:, D. Liberles (Ed.), Ancestral
Sequence Reconstruction, Oxford University Press, 2007, pp. 69–79.
date_created: 2018-12-11T12:03:18Z
date_published: 2007-01-01T00:00:00Z
date_updated: 2021-01-12T07:43:26Z
day: '01'
doi: 10.1093/acprof:oso/9780199299188.003.0006
editor:
- first_name: David
full_name: Liberles, David A
last_name: Liberles
extern: 1
month: '01'
page: 69 - 79
publication: Ancestral Sequence Reconstruction
publication_status: published
publisher: Oxford University Press
publist_id: '2968'
quality_controlled: 0
status: public
title: Estimating the history of mutations on a phylogeny
type: book_chapter
year: '2007'
...