---
_id: '6148'
author:
- first_name: Jan E.
full_name: Kammenga, Jan E.
last_name: Kammenga
- first_name: Patrick C.
full_name: Phillips, Patrick C.
last_name: Phillips
- first_name: Mario
full_name: de Bono, Mario
id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
last_name: de Bono
orcid: 0000-0001-8347-0443
- first_name: Agnieszka
full_name: Doroszuk, Agnieszka
last_name: Doroszuk
citation:
ama: 'Kammenga JE, Phillips PC, de Bono M, Doroszuk A. Beyond induced mutants: using
worms to study natural variation in genetic pathways. Trends in Genetics.
2008;24(4):178-185. doi:10.1016/j.tig.2008.01.001'
apa: 'Kammenga, J. E., Phillips, P. C., de Bono, M., & Doroszuk, A. (2008).
Beyond induced mutants: using worms to study natural variation in genetic pathways.
Trends in Genetics. Elsevier. https://doi.org/10.1016/j.tig.2008.01.001'
chicago: 'Kammenga, Jan E., Patrick C. Phillips, Mario de Bono, and Agnieszka Doroszuk.
“Beyond Induced Mutants: Using Worms to Study Natural Variation in Genetic Pathways.”
Trends in Genetics. Elsevier, 2008. https://doi.org/10.1016/j.tig.2008.01.001.'
ieee: 'J. E. Kammenga, P. C. Phillips, M. de Bono, and A. Doroszuk, “Beyond induced
mutants: using worms to study natural variation in genetic pathways,” Trends
in Genetics, vol. 24, no. 4. Elsevier, pp. 178–185, 2008.'
ista: 'Kammenga JE, Phillips PC, de Bono M, Doroszuk A. 2008. Beyond induced mutants:
using worms to study natural variation in genetic pathways. Trends in Genetics.
24(4), 178–185.'
mla: 'Kammenga, Jan E., et al. “Beyond Induced Mutants: Using Worms to Study Natural
Variation in Genetic Pathways.” Trends in Genetics, vol. 24, no. 4, Elsevier,
2008, pp. 178–85, doi:10.1016/j.tig.2008.01.001.'
short: J.E. Kammenga, P.C. Phillips, M. de Bono, A. Doroszuk, Trends in Genetics
24 (2008) 178–185.
date_created: 2019-03-21T08:19:45Z
date_published: 2008-04-01T00:00:00Z
date_updated: 2021-01-12T08:06:21Z
day: '01'
doi: 10.1016/j.tig.2008.01.001
extern: '1'
external_id:
pmid:
- '18325626'
intvolume: ' 24'
issue: '4'
language:
- iso: eng
month: '04'
oa_version: None
page: 178-185
pmid: 1
publication: Trends in Genetics
publication_identifier:
issn:
- 0168-9525
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Beyond induced mutants: using worms to study natural variation in genetic
pathways'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2008'
...
---
_id: '6149'
article_processing_charge: No
author:
- first_name: Birgitta
full_name: Olofsson, Birgitta
last_name: Olofsson
- first_name: Mario
full_name: de Bono, Mario
id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
last_name: de Bono
orcid: 0000-0001-8347-0443
citation:
ama: 'Olofsson B, de Bono M. Sleep: dozy worms and sleepy flies. Current Biology.
2008;18(5):R204-R206. doi:10.1016/j.cub.2008.01.002'
apa: 'Olofsson, B., & de Bono, M. (2008). Sleep: dozy worms and sleepy flies.
Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2008.01.002'
chicago: 'Olofsson, Birgitta, and Mario de Bono. “Sleep: Dozy Worms and Sleepy Flies.”
Current Biology. Elsevier, 2008. https://doi.org/10.1016/j.cub.2008.01.002.'
ieee: 'B. Olofsson and M. de Bono, “Sleep: dozy worms and sleepy flies,” Current
Biology, vol. 18, no. 5. Elsevier, pp. R204–R206, 2008.'
ista: 'Olofsson B, de Bono M. 2008. Sleep: dozy worms and sleepy flies. Current
Biology. 18(5), R204–R206.'
mla: 'Olofsson, Birgitta, and Mario de Bono. “Sleep: Dozy Worms and Sleepy Flies.”
Current Biology, vol. 18, no. 5, Elsevier, 2008, pp. R204–06, doi:10.1016/j.cub.2008.01.002.'
short: B. Olofsson, M. de Bono, Current Biology 18 (2008) R204–R206.
date_created: 2019-03-21T08:23:24Z
date_published: 2008-03-11T00:00:00Z
date_updated: 2022-08-25T15:03:41Z
day: '11'
doi: 10.1016/j.cub.2008.01.002
extern: '1'
external_id:
pmid:
- '18334193'
intvolume: ' 18'
issue: '5'
language:
- iso: eng
month: '03'
oa_version: None
page: R204-R206
pmid: 1
publication: Current Biology
publication_identifier:
issn:
- 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Sleep: dozy worms and sleepy flies'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2008'
...
---
_id: '1036'
abstract:
- lang: eng
text: We report on the control of interaction-induced dephasing of Bloch oscillations
for an atomic Bose-Einstein condensate in an optical lattice. We quantify the
dephasing in terms of the width of the quasimomentum distribution and measure
its dependence on time for different interaction strengths which we control by
means of a Feshbach resonance. For minimal interaction, the dephasing time is
increased from a few to more than 20 thousand Bloch oscillation periods, allowing
us to realize a BEC-based atom interferometer in the noninteracting limit.
acknowledgement: "We thank A. Daley for theoretical support and for help with\r\nsetting
\ up the numerical calculations and A. Buchleitner\r\nand his group for useful
\ discussions. We are grateful to\r\nA. Liem and H. Zellmer for valuable assistance
in setting\r\nup the 1064 nm fiber amplifier system. We acknowledge\r\ncontributions
\ by P. Unterwaditzer and T. Flir during the\r\nearly stages of the
\ experiment. We are indebted to\r\nR. Grimm for generous support and
\ gratefully acknowledge funding by the Austrian Ministry of Science and\r\nResearch
(BMWF) and the Austrian Science Fund (FWF)."
article_processing_charge: No
arxiv: 1
author:
- first_name: Mattias
full_name: Gustavsson, Mattias
last_name: Gustavsson
- first_name: Elmar
full_name: Haller, Elmar
last_name: Haller
- first_name: Manfred
full_name: Mark, Manfred
last_name: Mark
- first_name: Johann G
full_name: Danzl, Johann G
id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
last_name: Danzl
orcid: 0000-0001-8559-3973
- first_name: Gabriel
full_name: Rojas Kopeinig, Gabriel
last_name: Rojas Kopeinig
- first_name: Hanns
full_name: Nägerl, Hanns
last_name: Nägerl
citation:
ama: Gustavsson M, Haller E, Mark M, Danzl JG, Rojas Kopeinig G, Nägerl H. Control
of interaction-induced dephasing of bloch oscillations. Physical Review Letters.
2008;100(8). doi:10.1103/PhysRevLett.100.080404
apa: Gustavsson, M., Haller, E., Mark, M., Danzl, J. G., Rojas Kopeinig, G., &
Nägerl, H. (2008). Control of interaction-induced dephasing of bloch oscillations.
Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.100.080404
chicago: Gustavsson, Mattias, Elmar Haller, Manfred Mark, Johann G Danzl, Gabriel
Rojas Kopeinig, and Hanns Nägerl. “Control of Interaction-Induced Dephasing of
Bloch Oscillations.” Physical Review Letters. American Physical Society,
2008. https://doi.org/10.1103/PhysRevLett.100.080404.
ieee: M. Gustavsson, E. Haller, M. Mark, J. G. Danzl, G. Rojas Kopeinig, and H.
Nägerl, “Control of interaction-induced dephasing of bloch oscillations,” Physical
Review Letters, vol. 100, no. 8. American Physical Society, 2008.
ista: Gustavsson M, Haller E, Mark M, Danzl JG, Rojas Kopeinig G, Nägerl H. 2008.
Control of interaction-induced dephasing of bloch oscillations. Physical Review
Letters. 100(8).
mla: Gustavsson, Mattias, et al. “Control of Interaction-Induced Dephasing of Bloch
Oscillations.” Physical Review Letters, vol. 100, no. 8, American Physical
Society, 2008, doi:10.1103/PhysRevLett.100.080404.
short: M. Gustavsson, E. Haller, M. Mark, J.G. Danzl, G. Rojas Kopeinig, H. Nägerl,
Physical Review Letters 100 (2008).
date_created: 2018-12-11T11:49:48Z
date_published: 2008-02-28T00:00:00Z
date_updated: 2021-01-12T06:47:49Z
day: '28'
doi: 10.1103/PhysRevLett.100.080404
extern: '1'
external_id:
arxiv:
- '0710.5083'
intvolume: ' 100'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/0710.5083
month: '02'
oa: 1
oa_version: None
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6353'
status: public
title: Control of interaction-induced dephasing of bloch oscillations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 100
year: '2008'
...
---
_id: '1037'
abstract:
- lang: eng
text: We experimentally demonstrate Cs2 Feshbach molecules well above the dissociation
threshold, which are stable against spontaneous decay on the time scale of 1s.
An optically trapped sample of ultracold dimers is prepared in a high rotational
state and magnetically tuned into a region with a negative binding energy. The
metastable character of these molecules arises from the large centrifugal barrier
in combination with negligible coupling to states with low rotational angular
momentum. A sharp onset of dissociation with increasing magnetic field is mediated
by a crossing with a lower rotational dimer state and facilitates dissociation
on demand with a well-defined energy.
acknowledgement: We thank S. Du ̈rr and T. Volz for fruitful discussions. We acknowledge
support by the Austrian Science Fund (FWF) within No. SFB 15 (project part 16).
S.K. is supported within the Marie Curie Intra-European Program of the European
Commission. F.F. is supported within the Lise Meitner program of the FWF.
article_processing_charge: No
arxiv: 1
author:
- first_name: Steven
full_name: Knoop, Steven
last_name: Knoop
- first_name: Michael
full_name: Mark, Michael
last_name: Mark
- first_name: Francesca
full_name: Ferlaino, Francesca
last_name: Ferlaino
- first_name: Johann G
full_name: Danzl, Johann G
id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
last_name: Danzl
orcid: 0000-0001-8559-3973
- first_name: Tobias
full_name: Kraemer, Tobias
last_name: Kraemer
- first_name: Hanns
full_name: Nägerl, Hanns
last_name: Nägerl
- first_name: Rudolf
full_name: Grimm, Rudolf
last_name: Grimm
citation:
ama: Knoop S, Mark M, Ferlaino F, et al. Metastable feshbach molecules in high rotational
states. Physical Review Letters. 2008;100(8). doi:10.1103/PhysRevLett.100.083002
apa: Knoop, S., Mark, M., Ferlaino, F., Danzl, J. G., Kraemer, T., Nägerl, H., &
Grimm, R. (2008). Metastable feshbach molecules in high rotational states. Physical
Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.100.083002
chicago: Knoop, Steven, Michael Mark, Francesca Ferlaino, Johann G Danzl, Tobias
Kraemer, Hanns Nägerl, and Rudolf Grimm. “Metastable Feshbach Molecules in High
Rotational States.” Physical Review Letters. American Physical Society,
2008. https://doi.org/10.1103/PhysRevLett.100.083002.
ieee: S. Knoop et al., “Metastable feshbach molecules in high rotational
states,” Physical Review Letters, vol. 100, no. 8. American Physical Society,
2008.
ista: Knoop S, Mark M, Ferlaino F, Danzl JG, Kraemer T, Nägerl H, Grimm R. 2008.
Metastable feshbach molecules in high rotational states. Physical Review Letters.
100(8).
mla: Knoop, Steven, et al. “Metastable Feshbach Molecules in High Rotational States.”
Physical Review Letters, vol. 100, no. 8, American Physical Society, 2008,
doi:10.1103/PhysRevLett.100.083002.
short: S. Knoop, M. Mark, F. Ferlaino, J.G. Danzl, T. Kraemer, H. Nägerl, R. Grimm,
Physical Review Letters 100 (2008).
date_created: 2018-12-11T11:49:49Z
date_published: 2008-02-29T00:00:00Z
date_updated: 2021-01-12T06:47:50Z
day: '29'
doi: 10.1103/PhysRevLett.100.083002
extern: '1'
external_id:
arxiv:
- '0710.4052'
intvolume: ' 100'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/0710.4052
month: '02'
oa: 1
oa_version: None
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6352'
status: public
title: Metastable feshbach molecules in high rotational states
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 100
year: '2008'
...
---
_id: '1039'
abstract:
- lang: eng
text: Molecular cooling techniques face the hurdle of dissipating translational
as well as internal energy in the presence of a rich electronic, vibrational,
and rotational energy spectrum. In our experiment, we create a translationally
ultracold, dense quantum gas of molecules bound by more than 1000 wave numbers
in the electronic ground state. Specifically, we stimulate with 80% efficiency,
a two-photon transfer of molecules associated on a Feshbach resonance from a Bose-Einstein
condensate of cesium atoms. In the process, the initial loose, long-range electrostatic
bond of the Feshbach molecule is coherently transformed into a tight chemical
bond. We demonstrate coherence of the transfer in a Ramsey-type experiment and
show that the molecular sample is not heated during the transfer. Our results
show that the preparation of a quantum gas of molecules in specific rovibrational
states is possible and that the creation of a Bose-Einstein condensate of molecules
in their rovibronic ground state is within reach.
acknowledgement: " We thank the team of J. Hecker Denschlag, the LevT team in our
group, and T. Bergeman for very helpful discussions and M. Prevedelli for technical
assistance. We are indebted to R. Grimm for generous support and gratefully acknowledge
funding by the Austrian Ministry of Science and Research (Bundesministerium für
Wissenschaft und Forschung) and the Austrian Science Fund (Fonds zur Förderung der
wissenschaftlichen Forschung) in the form of a START prize grant and by the European
Science Foundation in the framework of the EuroQUAM collective research project
QuDipMol.\r\n"
article_processing_charge: No
arxiv: 1
author:
- first_name: Johann G
full_name: Danzl, Johann G
id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
last_name: Danzl
orcid: 0000-0001-8559-3973
- first_name: Elmar
full_name: Haller, Elmar
last_name: Haller
- first_name: Mattias
full_name: Gustavsson, Mattias
last_name: Gustavsson
- first_name: Manfred
full_name: Mark, Manfred
last_name: Mark
- first_name: Russell
full_name: Hart, Russell
last_name: Hart
- first_name: Nadia
full_name: Bouloufa, Nadia
last_name: Bouloufa
- first_name: Olivier
full_name: Dulieu, Olivier
last_name: Dulieu
- first_name: Helmut
full_name: Ritsch, Helmut
last_name: Ritsch
- first_name: Hanns
full_name: Nägerl, Hanns
last_name: Nägerl
citation:
ama: Danzl JG, Haller E, Gustavsson M, et al. Quantum gas of deeply bound ground
state molecules. Science. 2008;321(5892):1062-1066. doi:10.1126/science.1159909
apa: Danzl, J. G., Haller, E., Gustavsson, M., Mark, M., Hart, R., Bouloufa, N.,
… Nägerl, H. (2008). Quantum gas of deeply bound ground state molecules. Science.
American Association for the Advancement of Science. https://doi.org/10.1126/science.1159909
chicago: Danzl, Johann G, Elmar Haller, Mattias Gustavsson, Manfred Mark, Russell
Hart, Nadia Bouloufa, Olivier Dulieu, Helmut Ritsch, and Hanns Nägerl. “Quantum
Gas of Deeply Bound Ground State Molecules.” Science. American Association
for the Advancement of Science, 2008. https://doi.org/10.1126/science.1159909.
ieee: J. G. Danzl et al., “Quantum gas of deeply bound ground state molecules,”
Science, vol. 321, no. 5892. American Association for the Advancement of
Science, pp. 1062–1066, 2008.
ista: Danzl JG, Haller E, Gustavsson M, Mark M, Hart R, Bouloufa N, Dulieu O, Ritsch
H, Nägerl H. 2008. Quantum gas of deeply bound ground state molecules. Science.
321(5892), 1062–1066.
mla: Danzl, Johann G., et al. “Quantum Gas of Deeply Bound Ground State Molecules.”
Science, vol. 321, no. 5892, American Association for the Advancement of
Science, 2008, pp. 1062–66, doi:10.1126/science.1159909.
short: J.G. Danzl, E. Haller, M. Gustavsson, M. Mark, R. Hart, N. Bouloufa, O. Dulieu,
H. Ritsch, H. Nägerl, Science 321 (2008) 1062–1066.
date_created: 2018-12-11T11:49:49Z
date_published: 2008-08-22T00:00:00Z
date_updated: 2021-01-12T06:47:50Z
day: '22'
doi: 10.1126/science.1159909
extern: '1'
external_id:
arxiv:
- '0806.2284'
intvolume: ' 321'
issue: '5892'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/0806.2284
month: '08'
oa: 1
oa_version: None
page: 1062 - 1066
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '6351'
status: public
title: Quantum gas of deeply bound ground state molecules
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 321
year: '2008'
...
---
_id: '10392'
abstract:
- lang: eng
text: Protonated formylmetallocenes [M(C5H5)(C5H4-CHOH)]+ (M = Fe, Ru) and their
isomers have been studied at the BP86 and B3LYP levels of density functional theory.
Oxygen-protonated isomers are the most stable forms in each case, with a plethora
of ring- or metal-protonated species at least ca. 14 and 10 kcal/mol higher in
energy for M = Fe and Ru, respectively. The computed rotational barriers around
the C−C bond connecting the cyclopentadienyl and protonated formyl moieties, ca.
18 kcal/mol, are indicative of substantial conjugation between these moieties.
Some of the ring- and iron-protonated species are models for possible intermediates
in Friedel–Crafts acylation of ferrocene, and the computations provide further
evidence that exo attack is clearly favored over endo attack of the electrophile
in this reaction. The structures of the most stable mono- and diprotonated formylferrocenes
are corroborated by the good agreement between GIAO-B3LYP-computed and experimental
NMR chemical shifts.
acknowledgement: M.B. wishes to thank Prof. W. Thiel and the Max-Planck-Institut für
Kohlenforschung for continuing support. A Humboldt fellowship for V.V. is gratefully
acknowledged. Computations were performed on Compaq XP1000 and ES40 workstations
as well as on an Intel Xeon PC cluster at the MPI Mülheim. A.S. thanks the Computing
Center of the University of Zagreb SRCE for allocating computer time on the Isabella
cluster.
article_processing_charge: No
article_type: original
author:
- first_name: Anđela
full_name: Šarić, Anđela
id: bf63d406-f056-11eb-b41d-f263a6566d8b
last_name: Šarić
orcid: 0000-0002-7854-2139
- first_name: Valerije
full_name: Vrček, Valerije
last_name: Vrček
- first_name: Michael
full_name: Bühl, Michael
last_name: Bühl
citation:
ama: Šarić A, Vrček V, Bühl M. Density functional study of protonated formylmetallocenes.
Organometallics. 2008;27(3):394-401. doi:10.1021/om700916f
apa: Šarić, A., Vrček, V., & Bühl, M. (2008). Density functional study of protonated
formylmetallocenes. Organometallics. American Chemical Society. https://doi.org/10.1021/om700916f
chicago: Šarić, Anđela, Valerije Vrček, and Michael Bühl. “Density Functional Study
of Protonated Formylmetallocenes.” Organometallics. American Chemical Society,
2008. https://doi.org/10.1021/om700916f.
ieee: A. Šarić, V. Vrček, and M. Bühl, “Density functional study of protonated formylmetallocenes,”
Organometallics, vol. 27, no. 3. American Chemical Society, pp. 394–401,
2008.
ista: Šarić A, Vrček V, Bühl M. 2008. Density functional study of protonated formylmetallocenes.
Organometallics. 27(3), 394–401.
mla: Šarić, Anđela, et al. “Density Functional Study of Protonated Formylmetallocenes.”
Organometallics, vol. 27, no. 3, American Chemical Society, 2008, pp. 394–401,
doi:10.1021/om700916f.
short: A. Šarić, V. Vrček, M. Bühl, Organometallics 27 (2008) 394–401.
date_created: 2021-11-29T15:31:06Z
date_published: 2008-01-15T00:00:00Z
date_updated: 2021-11-30T08:04:44Z
day: '15'
doi: 10.1021/om700916f
extern: '1'
intvolume: ' 27'
issue: '3'
keyword:
- Inorganic Chemistry
- Organic Chemistry
- Physical and Theoretical Chemistry
language:
- iso: eng
main_file_link:
- url: https://pubs.acs.org/doi/10.1021/om700916f
month: '01'
oa_version: None
page: 394-401
publication: Organometallics
publication_identifier:
eissn:
- 1520-6041
issn:
- 0276-7333
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Density functional study of protonated formylmetallocenes
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 27
year: '2008'
...
---
_id: '9457'
abstract:
- lang: eng
text: Eukaryotic chromatin is separated into functional domains differentiated by
posttranslational histone modifications, histone variants, and DNA methylation1–6.
Methylation is associated with repression of transcriptional initiation in plants
and animals, and is frequently found in transposable elements. Proper methylation
patterns are critical for eukaryotic development4,5, and aberrant methylation-induced
silencing of tumor suppressor genes is a common feature of human cancer7. In contrast
to methylation, the histone variant H2A.Z is preferentially deposited by the Swr1
ATPase complex near 5′ ends of genes where it promotes transcriptional competence8–20.
How DNA methylation and H2A.Z influence transcription remains largely unknown.
Here we show that in the plant Arabidopsis thaliana, regions of DNA methylation
are quantitatively deficient in H2A.Z. Exclusion of H2A.Z is seen at sites of
DNA methylation in the bodies of actively transcribed genes and in methylated
transposons. Mutation of the MET1 DNA methyltransferase, which causes both losses
and gains of DNA methylation4,5, engenders opposite changes in H2A.Z deposition,
while mutation of the PIE1 subunit of the Swr1 complex that deposits H2A.Z17 leads
to genome-wide hypermethylation. Our findings indicate that DNA methylation can
influence chromatin structure and effect gene silencing by excluding H2A.Z, and
that H2A.Z protects genes from DNA methylation.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
- first_name: Devin
full_name: Coleman-Derr, Devin
last_name: Coleman-Derr
- first_name: Tracy
full_name: Ballinger, Tracy
last_name: Ballinger
- first_name: Steven
full_name: Henikoff, Steven
last_name: Henikoff
citation:
ama: Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. Histone H2A.Z and DNA
methylation are mutually antagonistic chromatin marks. Nature. 2008;456(7218):125-129.
doi:10.1038/nature07324
apa: Zilberman, D., Coleman-Derr, D., Ballinger, T., & Henikoff, S. (2008).
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature.
Springer Nature. https://doi.org/10.1038/nature07324
chicago: Zilberman, Daniel, Devin Coleman-Derr, Tracy Ballinger, and Steven Henikoff.
“Histone H2A.Z and DNA Methylation Are Mutually Antagonistic Chromatin Marks.”
Nature. Springer Nature, 2008. https://doi.org/10.1038/nature07324.
ieee: D. Zilberman, D. Coleman-Derr, T. Ballinger, and S. Henikoff, “Histone H2A.Z
and DNA methylation are mutually antagonistic chromatin marks,” Nature,
vol. 456, no. 7218. Springer Nature, pp. 125–129, 2008.
ista: Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. 2008. Histone H2A.Z
and DNA methylation are mutually antagonistic chromatin marks. Nature. 456(7218),
125–129.
mla: Zilberman, Daniel, et al. “Histone H2A.Z and DNA Methylation Are Mutually Antagonistic
Chromatin Marks.” Nature, vol. 456, no. 7218, Springer Nature, 2008, pp.
125–29, doi:10.1038/nature07324.
short: D. Zilberman, D. Coleman-Derr, T. Ballinger, S. Henikoff, Nature 456 (2008)
125–129.
date_created: 2021-06-04T11:49:32Z
date_published: 2008-11-06T00:00:00Z
date_updated: 2021-12-14T08:54:36Z
day: '06'
department:
- _id: DaZi
doi: 10.1038/nature07324
extern: '1'
external_id:
pmid:
- '18815594'
intvolume: ' 456'
issue: '7218'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877514/
month: '11'
oa: 1
oa_version: Submitted Version
page: 125-129
pmid: 1
publication: Nature
publication_identifier:
eissn:
- 1476-4687
issn:
- 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 456
year: '2008'
...
---
_id: '9537'
abstract:
- lang: eng
text: DNA methylation is an ancient process found in all domains of life. Although
the enzymes that mediate methylation have remained highly conserved, DNA methylation
has been adapted for a variety of uses throughout evolution, including defense
against transposable elements and control of gene expression. Defects in DNA methylation
are linked to human diseases, including cancer. Methylation has been lost several
times in the course of animal and fungal evolution, thus limiting the opportunity
for study in common model organisms. In the past decade, plants have emerged as
a premier model system for genetic dissection of DNA methylation. A recent combination
of plant genetics with powerful genomic approaches has led to a number of exciting
discoveries and promises many more.
article_processing_charge: No
article_type: review
author:
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
citation:
ama: Zilberman D. The evolving functions of DNA methylation. Current Opinion
in Plant Biology. 2008;11(5):554-559. doi:10.1016/j.pbi.2008.07.004
apa: Zilberman, D. (2008). The evolving functions of DNA methylation. Current
Opinion in Plant Biology. Elsevier . https://doi.org/10.1016/j.pbi.2008.07.004
chicago: Zilberman, Daniel. “The Evolving Functions of DNA Methylation.” Current
Opinion in Plant Biology. Elsevier , 2008. https://doi.org/10.1016/j.pbi.2008.07.004.
ieee: D. Zilberman, “The evolving functions of DNA methylation,” Current Opinion
in Plant Biology, vol. 11, no. 5. Elsevier , pp. 554–559, 2008.
ista: Zilberman D. 2008. The evolving functions of DNA methylation. Current Opinion
in Plant Biology. 11(5), 554–559.
mla: Zilberman, Daniel. “The Evolving Functions of DNA Methylation.” Current
Opinion in Plant Biology, vol. 11, no. 5, Elsevier , 2008, pp. 554–59, doi:10.1016/j.pbi.2008.07.004.
short: D. Zilberman, Current Opinion in Plant Biology 11 (2008) 554–559.
date_created: 2021-06-08T13:13:37Z
date_published: 2008-10-01T00:00:00Z
date_updated: 2021-12-14T08:54:07Z
department:
- _id: DaZi
doi: 10.1016/j.pbi.2008.07.004
extern: '1'
external_id:
pmid:
- '18774331'
intvolume: ' 11'
issue: '5'
language:
- iso: eng
month: '10'
oa_version: None
page: 554-559
pmid: 1
publication: Current Opinion in Plant Biology
publication_identifier:
issn:
- 1369-5266
publication_status: published
publisher: 'Elsevier '
quality_controlled: '1'
scopus_import: '1'
status: public
title: The evolving functions of DNA methylation
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 11
year: '2008'
...
---
_id: '965'
abstract:
- lang: eng
text: We give many examples of applying Bogoliubov's forest formula to iterative
solutions of various nonlinear equations. The same formula describes an extremely
wide class of objects, from an ordinary quadratic equation to renormalization
in quantum field theory.
acknowledgement: |-
This work is supported in part by the Dynasty Foundation (M. N. S.), the
Russian Foundation for Basic Research (Grant No
s. 07-02-00878 and 07-02-00645), a joint grant (Grant
No. 06-01-92059-CE), the NWO (Project No. 047.011.2004.026), INTAS (Grant No. 05-1000008-7865), the
Program for Supporting Leading Scientific School
s (Grant No. NSh-8004.2006.2), and also by a project
(Project No. ANR-05-BLAN-0029-01, A. Yu. M.).
author:
- first_name: Alexei
full_name: Morozov, Alexei Y
last_name: Morozov
- first_name: Maksym
full_name: Maksym Serbyn
id: 47809E7E-F248-11E8-B48F-1D18A9856A87
last_name: Serbyn
orcid: 0000-0002-2399-5827
citation:
ama: Morozov A, Serbyn M. Nonlinear algebra and Bogoliubov’s recursion. Theoretical
and Mathematical Physics. 2008;154(2):270-293. doi:10.1007/s11232-008-0026-7
apa: Morozov, A., & Serbyn, M. (2008). Nonlinear algebra and Bogoliubov’s recursion.
Theoretical and Mathematical Physics. Elsevier. https://doi.org/10.1007/s11232-008-0026-7
chicago: Morozov, Alexei, and Maksym Serbyn. “Nonlinear Algebra and Bogoliubov’s
Recursion.” Theoretical and Mathematical Physics. Elsevier, 2008. https://doi.org/10.1007/s11232-008-0026-7.
ieee: A. Morozov and M. Serbyn, “Nonlinear algebra and Bogoliubov’s recursion,”
Theoretical and Mathematical Physics, vol. 154, no. 2. Elsevier, pp. 270–293,
2008.
ista: Morozov A, Serbyn M. 2008. Nonlinear algebra and Bogoliubov’s recursion. Theoretical
and Mathematical Physics. 154(2), 270–293.
mla: Morozov, Alexei, and Maksym Serbyn. “Nonlinear Algebra and Bogoliubov’s Recursion.”
Theoretical and Mathematical Physics, vol. 154, no. 2, Elsevier, 2008,
pp. 270–93, doi:10.1007/s11232-008-0026-7.
short: A. Morozov, M. Serbyn, Theoretical and Mathematical Physics 154 (2008) 270–293.
date_created: 2018-12-11T11:49:26Z
date_published: 2008-01-01T00:00:00Z
date_updated: 2021-01-12T08:22:17Z
day: '01'
doi: 10.1007/s11232-008-0026-7
extern: 1
intvolume: ' 154'
issue: '2'
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/hep-th/0703258
month: '01'
oa: 1
page: 270 - 293
publication: Theoretical and Mathematical Physics
publication_status: published
publisher: Elsevier
publist_id: '6437'
quality_controlled: 0
status: public
title: Nonlinear algebra and Bogoliubov's recursion
type: journal_article
volume: 154
year: '2008'
...
---
_id: '11109'
abstract:
- lang: eng
text: The nuclear envelope (NE) provides a selective barrier between the nuclear
interior and the cytoplasm and constitutes a central component of intracellular
architecture. During mitosis in metazoa, the NE breaks down leading to the complete
mixing of the nuclear content with the cytosol. Interestingly, many NE components
actively participate in mitotic progression. After chromosome segregation, the
NE is reassembled around decondensing chromatin and the nuclear compartment is
reestablished in the daughter cells. Here, we summarize recent progress in deciphering
the molecular mechanisms underlying NE dynamics during cell division.
article_processing_charge: No
article_type: original
author:
- first_name: Ulrike
full_name: Kutay, Ulrike
last_name: Kutay
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: Kutay U, Hetzer M. Reorganization of the nuclear envelope during open mitosis.
Current Opinion in Cell Biology. 2008;20(6):669-677. doi:10.1016/j.ceb.2008.09.010
apa: Kutay, U., & Hetzer, M. (2008). Reorganization of the nuclear envelope
during open mitosis. Current Opinion in Cell Biology. Elsevier. https://doi.org/10.1016/j.ceb.2008.09.010
chicago: Kutay, Ulrike, and Martin Hetzer. “Reorganization of the Nuclear Envelope
during Open Mitosis.” Current Opinion in Cell Biology. Elsevier, 2008.
https://doi.org/10.1016/j.ceb.2008.09.010.
ieee: U. Kutay and M. Hetzer, “Reorganization of the nuclear envelope during open
mitosis,” Current Opinion in Cell Biology, vol. 20, no. 6. Elsevier, pp.
669–677, 2008.
ista: Kutay U, Hetzer M. 2008. Reorganization of the nuclear envelope during open
mitosis. Current Opinion in Cell Biology. 20(6), 669–677.
mla: Kutay, Ulrike, and Martin Hetzer. “Reorganization of the Nuclear Envelope during
Open Mitosis.” Current Opinion in Cell Biology, vol. 20, no. 6, Elsevier,
2008, pp. 669–77, doi:10.1016/j.ceb.2008.09.010.
short: U. Kutay, M. Hetzer, Current Opinion in Cell Biology 20 (2008) 669–677.
date_created: 2022-04-07T07:55:00Z
date_published: 2008-12-01T00:00:00Z
date_updated: 2022-07-18T08:55:32Z
day: '01'
doi: 10.1016/j.ceb.2008.09.010
extern: '1'
external_id:
pmid:
- '18938243'
intvolume: ' 20'
issue: '6'
keyword:
- Cell Biology
language:
- iso: eng
month: '12'
oa_version: None
page: 669-677
pmid: 1
publication: Current Opinion in Cell Biology
publication_identifier:
issn:
- 0955-0674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Reorganization of the nuclear envelope during open mitosis
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 20
year: '2008'
...
---
_id: '11110'
abstract:
- lang: eng
text: Nuclear pore complexes are large aqueous channels that penetrate the nuclear
envelope, thereby connecting the nuclear interior with the cytoplasm. Until recently,
these macromolecular complexes were viewed as static structures, the only function
of which was to control the molecular trafficking between the two compartments.
It has now become evident that this simplistic scenario is inaccurate and that
nuclear pore complexes are highly dynamic multiprotein assemblies involved in
diverse cellular processes ranging from the organization of the cytoskeleton to
gene expression. In this review, we discuss the most recent developments in the
nuclear-pore-complex field, focusing on the assembly, disassembly, maintenance
and function of this macromolecular structure.
article_processing_charge: No
article_type: review
author:
- first_name: Maximiliano A.
full_name: D’Angelo, Maximiliano A.
last_name: D’Angelo
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: D’Angelo MA, Hetzer M. Structure, dynamics and function of nuclear pore complexes.
Trends in Cell Biology. 2008;18(10):456-466. doi:10.1016/j.tcb.2008.07.009
apa: D’Angelo, M. A., & Hetzer, M. (2008). Structure, dynamics and function
of nuclear pore complexes. Trends in Cell Biology. Elsevier. https://doi.org/10.1016/j.tcb.2008.07.009
chicago: D’Angelo, Maximiliano A., and Martin Hetzer. “Structure, Dynamics and Function
of Nuclear Pore Complexes.” Trends in Cell Biology. Elsevier, 2008. https://doi.org/10.1016/j.tcb.2008.07.009.
ieee: M. A. D’Angelo and M. Hetzer, “Structure, dynamics and function of nuclear
pore complexes,” Trends in Cell Biology, vol. 18, no. 10. Elsevier, pp.
456–466, 2008.
ista: D’Angelo MA, Hetzer M. 2008. Structure, dynamics and function of nuclear pore
complexes. Trends in Cell Biology. 18(10), 456–466.
mla: D’Angelo, Maximiliano A., and Martin Hetzer. “Structure, Dynamics and Function
of Nuclear Pore Complexes.” Trends in Cell Biology, vol. 18, no. 10, Elsevier,
2008, pp. 456–66, doi:10.1016/j.tcb.2008.07.009.
short: M.A. D’Angelo, M. Hetzer, Trends in Cell Biology 18 (2008) 456–466.
date_created: 2022-04-07T07:55:10Z
date_published: 2008-10-01T00:00:00Z
date_updated: 2022-07-18T08:55:33Z
day: '01'
doi: 10.1016/j.tcb.2008.07.009
extern: '1'
external_id:
pmid:
- '18786826'
intvolume: ' 18'
issue: '10'
keyword:
- Cell Biology
language:
- iso: eng
month: '10'
oa_version: None
page: 456-466
pmid: 1
publication: Trends in Cell Biology
publication_identifier:
issn:
- 0962-8924
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Structure, dynamics and function of nuclear pore complexes
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 18
year: '2008'
...
---
_id: '11111'
abstract:
- lang: eng
text: During mitosis in metazoans, segregated chromosomes become enclosed by the
nuclear envelope (NE), a double membrane that is continuous with the endoplasmic
reticulum (ER). Recent in vitro data suggest that NE formation occurs by chromatin-mediated
reorganization of the tubular ER; however, the basic principles of such a membrane-reshaping
process remain uncharacterized. Here, we present a quantitative analysis of nuclear
membrane assembly in mammalian cells using time-lapse microscopy. From the initial
recruitment of ER tubules to chromatin, the formation of a membrane-enclosed,
transport-competent nucleus occurs within ∼12 min. Overexpression of the ER tubule-forming
proteins reticulon 3, reticulon 4, and DP1 inhibits NE formation and nuclear expansion,
whereas their knockdown accelerates nuclear assembly. This suggests that the transition
from membrane tubules to sheets is rate-limiting for nuclear assembly. Our results
provide evidence that ER-shaping proteins are directly involved in the reconstruction
of the nuclear compartment and that morphological restructuring of the ER is the
principal mechanism of NE formation in vivo.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel J.
full_name: Anderson, Daniel J.
last_name: Anderson
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: Anderson DJ, Hetzer M. Reshaping of the endoplasmic reticulum limits the rate
for nuclear envelope formation. Journal of Cell Biology. 2008;182(5):911-924.
doi:10.1083/jcb.200805140
apa: Anderson, D. J., & Hetzer, M. (2008). Reshaping of the endoplasmic reticulum
limits the rate for nuclear envelope formation. Journal of Cell Biology.
Rockefeller University Press. https://doi.org/10.1083/jcb.200805140
chicago: Anderson, Daniel J., and Martin Hetzer. “Reshaping of the Endoplasmic Reticulum
Limits the Rate for Nuclear Envelope Formation.” Journal of Cell Biology.
Rockefeller University Press, 2008. https://doi.org/10.1083/jcb.200805140.
ieee: D. J. Anderson and M. Hetzer, “Reshaping of the endoplasmic reticulum limits
the rate for nuclear envelope formation,” Journal of Cell Biology, vol.
182, no. 5. Rockefeller University Press, pp. 911–924, 2008.
ista: Anderson DJ, Hetzer M. 2008. Reshaping of the endoplasmic reticulum limits
the rate for nuclear envelope formation. Journal of Cell Biology. 182(5), 911–924.
mla: Anderson, Daniel J., and Martin Hetzer. “Reshaping of the Endoplasmic Reticulum
Limits the Rate for Nuclear Envelope Formation.” Journal of Cell Biology,
vol. 182, no. 5, Rockefeller University Press, 2008, pp. 911–24, doi:10.1083/jcb.200805140.
short: D.J. Anderson, M. Hetzer, Journal of Cell Biology 182 (2008) 911–924.
date_created: 2022-04-07T07:55:23Z
date_published: 2008-09-08T00:00:00Z
date_updated: 2022-07-18T08:56:02Z
day: '08'
doi: 10.1083/jcb.200805140
extern: '1'
external_id:
pmid:
- '18779370'
intvolume: ' 182'
issue: '5'
keyword:
- Cell Biology
language:
- iso: eng
month: '09'
oa_version: None
page: 911-924
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
eissn:
- 1540-8140
issn:
- 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope
formation
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 182
year: '2008'
...
---
_id: '11112'
abstract:
- lang: eng
text: The nuclear envelope is a double-layered membrane that encloses the nuclear
genome and transcriptional machinery. In dividing cells of metazoa, the nucleus
completely disassembles during mitosis, creating the need to re-establish the
nuclear compartment at the end of each cell division. Given the crucial role of
the nuclear envelope in gene regulation and cellular organization, it is not surprising
that its biogenesis and organization have become active research areas. We will
review recent insights into nuclear membrane dynamics during the cell cycle.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel J
full_name: Anderson, Daniel J
last_name: Anderson
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: Anderson DJ, Hetzer M. The life cycle of the metazoan nuclear envelope. Current
Opinion in Cell Biology. 2008;20(4):386-392. doi:10.1016/j.ceb.2008.03.016
apa: Anderson, D. J., & Hetzer, M. (2008). The life cycle of the metazoan nuclear
envelope. Current Opinion in Cell Biology. Elsevier. https://doi.org/10.1016/j.ceb.2008.03.016
chicago: Anderson, Daniel J, and Martin Hetzer. “The Life Cycle of the Metazoan
Nuclear Envelope.” Current Opinion in Cell Biology. Elsevier, 2008. https://doi.org/10.1016/j.ceb.2008.03.016.
ieee: D. J. Anderson and M. Hetzer, “The life cycle of the metazoan nuclear envelope,”
Current Opinion in Cell Biology, vol. 20, no. 4. Elsevier, pp. 386–392,
2008.
ista: Anderson DJ, Hetzer M. 2008. The life cycle of the metazoan nuclear envelope.
Current Opinion in Cell Biology. 20(4), 386–392.
mla: Anderson, Daniel J., and Martin Hetzer. “The Life Cycle of the Metazoan Nuclear
Envelope.” Current Opinion in Cell Biology, vol. 20, no. 4, Elsevier, 2008,
pp. 386–92, doi:10.1016/j.ceb.2008.03.016.
short: D.J. Anderson, M. Hetzer, Current Opinion in Cell Biology 20 (2008) 386–392.
date_created: 2022-04-07T07:55:34Z
date_published: 2008-08-01T00:00:00Z
date_updated: 2022-07-18T08:56:07Z
day: '01'
doi: 10.1016/j.ceb.2008.03.016
extern: '1'
external_id:
pmid:
- '18495454'
intvolume: ' 20'
issue: '4'
keyword:
- Cell Biology
language:
- iso: eng
month: '08'
oa_version: None
page: 386-392
pmid: 1
publication: Current Opinion in Cell Biology
publication_identifier:
issn:
- 0955-0674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: The life cycle of the metazoan nuclear envelope
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 20
year: '2008'
...
---
_id: '11113'
abstract:
- lang: eng
text: The nuclear envelope (NE), a double membrane enclosing the nucleus of eukaryotic
cells, controls the flow of information between the nucleoplasm and the cytoplasm
and provides a scaffold for the organization of chromatin and the cytoskeleton.
In dividing metazoan cells, the NE breaks down at the onset of mitosis and then
reforms around segregated chromosomes to generate the daughter nuclei. Recent
data from intact cells and cell-free nuclear assembly systems suggest that the
endoplasmic reticulum (ER) is the source of membrane for NE assembly. At the end
of mitosis, ER membrane tubules are targeted to chromatin via tubule ends and
reorganized into flat nuclear membrane sheets by specific DNA-binding membrane
proteins. In contrast to previous models, which proposed vesicle fusion to be
the principal mechanism of NE formation, these new studies suggest that the nuclear
membrane forms by the chromatin-mediated reshaping of the ER.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Daniel J.
full_name: Anderson, Daniel J.
last_name: Anderson
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: Anderson DJ, Hetzer M. Shaping the endoplasmic reticulum into the nuclear envelope.
Journal of Cell Science. 2008;121(2):137-142. doi:10.1242/jcs.005777
apa: Anderson, D. J., & Hetzer, M. (2008). Shaping the endoplasmic reticulum
into the nuclear envelope. Journal of Cell Science. The Company of Biologists.
https://doi.org/10.1242/jcs.005777
chicago: Anderson, Daniel J., and Martin Hetzer. “Shaping the Endoplasmic Reticulum
into the Nuclear Envelope.” Journal of Cell Science. The Company of Biologists,
2008. https://doi.org/10.1242/jcs.005777.
ieee: D. J. Anderson and M. Hetzer, “Shaping the endoplasmic reticulum into the
nuclear envelope,” Journal of Cell Science, vol. 121, no. 2. The Company
of Biologists, pp. 137–142, 2008.
ista: Anderson DJ, Hetzer M. 2008. Shaping the endoplasmic reticulum into the nuclear
envelope. Journal of Cell Science. 121(2), 137–142.
mla: Anderson, Daniel J., and Martin Hetzer. “Shaping the Endoplasmic Reticulum
into the Nuclear Envelope.” Journal of Cell Science, vol. 121, no. 2, The
Company of Biologists, 2008, pp. 137–42, doi:10.1242/jcs.005777.
short: D.J. Anderson, M. Hetzer, Journal of Cell Science 121 (2008) 137–142.
date_created: 2022-04-07T07:55:46Z
date_published: 2008-01-15T00:00:00Z
date_updated: 2022-07-18T08:56:10Z
day: '15'
doi: 10.1242/jcs.005777
extern: '1'
external_id:
pmid:
- '18187447'
intvolume: ' 121'
issue: '2'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1242/jcs.005777
month: '01'
oa: 1
oa_version: Published Version
page: 137-142
pmid: 1
publication: Journal of Cell Science
publication_identifier:
eissn:
- 1477-9137
issn:
- 0021-9533
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Shaping the endoplasmic reticulum into the nuclear envelope
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 121
year: '2008'
...
---
_id: '11114'
abstract:
- lang: eng
text: We present a miniaturized pull-down method for the detection of protein-protein
interactions using standard affinity chromatography reagents. Binding events between
different proteins, which are color-coded with quantum dots (QDs), are visualized
on single affinity chromatography beads by fluorescence microscopy. The use of
QDs for single molecule detection allows the simultaneous analysis of multiple
protein-protein binding events and reduces the amount of time and material needed
to perform a pull-down experiment.
article_number: e2061
article_processing_charge: No
article_type: original
author:
- first_name: Roberta
full_name: Schulte, Roberta
last_name: Schulte
- first_name: Jessica
full_name: Talamas, Jessica
last_name: Talamas
- first_name: Christine
full_name: Doucet, Christine
last_name: Doucet
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: Schulte R, Talamas J, Doucet C, Hetzer M. Single bead affinity detection (SINBAD)
for the analysis of protein-protein interactions. PLoS ONE. 2008;3(4).
doi:10.1371/journal.pone.0002061
apa: Schulte, R., Talamas, J., Doucet, C., & Hetzer, M. (2008). Single bead
affinity detection (SINBAD) for the analysis of protein-protein interactions.
PLoS ONE. Public Library of Science. https://doi.org/10.1371/journal.pone.0002061
chicago: Schulte, Roberta, Jessica Talamas, Christine Doucet, and Martin Hetzer.
“Single Bead Affinity Detection (SINBAD) for the Analysis of Protein-Protein Interactions.”
PLoS ONE. Public Library of Science, 2008. https://doi.org/10.1371/journal.pone.0002061.
ieee: R. Schulte, J. Talamas, C. Doucet, and M. Hetzer, “Single bead affinity detection
(SINBAD) for the analysis of protein-protein interactions,” PLoS ONE, vol.
3, no. 4. Public Library of Science, 2008.
ista: Schulte R, Talamas J, Doucet C, Hetzer M. 2008. Single bead affinity detection
(SINBAD) for the analysis of protein-protein interactions. PLoS ONE. 3(4), e2061.
mla: Schulte, Roberta, et al. “Single Bead Affinity Detection (SINBAD) for the Analysis
of Protein-Protein Interactions.” PLoS ONE, vol. 3, no. 4, e2061, Public
Library of Science, 2008, doi:10.1371/journal.pone.0002061.
short: R. Schulte, J. Talamas, C. Doucet, M. Hetzer, PLoS ONE 3 (2008).
date_created: 2022-04-07T07:55:57Z
date_published: 2008-04-30T00:00:00Z
date_updated: 2022-07-18T08:56:36Z
day: '30'
doi: 10.1371/journal.pone.0002061
extern: '1'
external_id:
pmid:
- '18446240'
intvolume: ' 3'
issue: '4'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.1371/journal.pone.0002061'
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLoS ONE
publication_identifier:
issn:
- 1932-6203
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Single bead affinity detection (SINBAD) for the analysis of protein-protein
interactions
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 3
year: '2008'
...
---
_id: '11878'
abstract:
- lang: eng
text: "Given only the URL of a web page, can we identify its language? This is the
question that we examine in this paper.\r\nSuch a language classifier is, for
example, useful for crawlers of web search engines, which frequently try to satisfy
certain language quotas. To determine the language of uncrawled web pages, they
have to download the page, which might be wasteful, if the page is not in the
desired language. With URL-based language classifiers these redundant downloads
can be avoided.\r\n\r\nWe apply a variety of machine learning algorithms to the
language identification task and evaluate their performance in extensive experiments
for five languages: English, French, German, Spanish and Italian. Our best methods
achieve an F-measure, averaged over all languages, of around .90 for both a random
sample of 1,260 web page from a large web crawl and for 25k pages from the ODP
directory. For 5k pages of web search engine results we even achieve an F-measure
of .96. The achieved recall for these collections is .93, .88 and .95 respectively.
Two independent human evaluators performed considerably worse on the task, with
an F-measure of .75 and a typical recall of a mere .67. Using only country-code
top-level domains, such as .de or .fr yields a good precision, but a typical recall
of below .60 and an F-measure of around .68."
article_processing_charge: No
article_type: original
author:
- first_name: Eda
full_name: Baykan, Eda
last_name: Baykan
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Ingmar
full_name: Weber, Ingmar
last_name: Weber
citation:
ama: Baykan E, Henzinger MH, Weber I. Web page language identification based on
URLs. Proceedings of the VLDB Endowment. 2008;1(1):176-187. doi:10.14778/1453856.1453880
apa: Baykan, E., Henzinger, M. H., & Weber, I. (2008). Web page language identification
based on URLs. Proceedings of the VLDB Endowment. Association for Computing
Machinery. https://doi.org/10.14778/1453856.1453880
chicago: Baykan, Eda, Monika H Henzinger, and Ingmar Weber. “Web Page Language Identification
Based on URLs.” Proceedings of the VLDB Endowment. Association for Computing
Machinery, 2008. https://doi.org/10.14778/1453856.1453880.
ieee: E. Baykan, M. H. Henzinger, and I. Weber, “Web page language identification
based on URLs,” Proceedings of the VLDB Endowment, vol. 1, no. 1. Association
for Computing Machinery, pp. 176–187, 2008.
ista: Baykan E, Henzinger MH, Weber I. 2008. Web page language identification based
on URLs. Proceedings of the VLDB Endowment. 1(1), 176–187.
mla: Baykan, Eda, et al. “Web Page Language Identification Based on URLs.” Proceedings
of the VLDB Endowment, vol. 1, no. 1, Association for Computing Machinery,
2008, pp. 176–87, doi:10.14778/1453856.1453880.
short: E. Baykan, M.H. Henzinger, I. Weber, Proceedings of the VLDB Endowment 1
(2008) 176–187.
date_created: 2022-08-16T13:10:11Z
date_published: 2008-08-01T00:00:00Z
date_updated: 2023-02-17T13:55:24Z
day: '01'
doi: 10.14778/1453856.1453880
extern: '1'
intvolume: ' 1'
issue: '1'
language:
- iso: eng
month: '08'
oa_version: None
page: 176-187
publication: Proceedings of the VLDB Endowment
publication_identifier:
issn:
- 2150-8097
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Web page language identification based on URLs
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2008'
...
---
_id: '2078'
abstract:
- lang: eng
text: 'This paper presents a novel method for real-time animation of highly-detailed
facial expressions based on a multi-scale decomposition of facial geometry into
large-scale motion and fine-scale details, such as expression wrinkles. Our hybrid
animation is tailored to the specific characteristics of large- and fine-scale
facial deformations: Large-scale deformations are computed with a fast linear
shell model, which is intuitively and accurately controlled through a sparse set
of motion-capture markers or user-defined handle points. Fine-scale facial details
are incorporated using a novel pose-space deformation technique, which learns
the correspondence of sparse measurements of skin strain to wrinkle formation
from a small set of example poses. Our hybrid method features real-time animation
of highly-detailed faces with realistic wrinkle formation, and allows both large-scale
deformations and fine-scale wrinkles to be edited intuitively. Furthermore, our
pose-space representation enables the transfer of facial details to novel expressions
or other facial models.'
acknowledgement: This research was supported by the NCCR Co-Me of the Swiss National
Science Foundation.
author:
- first_name: Bernd
full_name: Bickel, Bernd
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
- first_name: Manuel
full_name: Lang, Manuel
last_name: Lang
- first_name: Mario
full_name: Botsch, Mario
last_name: Botsch
- first_name: Miguel
full_name: Otaduy, Miguel
last_name: Otaduy
- first_name: Markus
full_name: Gross, Markus
last_name: Gross
citation:
ama: 'Bickel B, Lang M, Botsch M, Otaduy M, Gross M. Pose-space animation and transfer
of facial details. In: ACM; 2008:57-66. doi:10.2312/SCA/SCA08/057-066'
apa: 'Bickel, B., Lang, M., Botsch, M., Otaduy, M., & Gross, M. (2008). Pose-space
animation and transfer of facial details (pp. 57–66). Presented at the SIGGRAPH:
Eurographics Symposium on Computer Animation, ACM. https://doi.org/10.2312/SCA/SCA08/057-066'
chicago: Bickel, Bernd, Manuel Lang, Mario Botsch, Miguel Otaduy, and Markus Gross.
“Pose-Space Animation and Transfer of Facial Details,” 57–66. ACM, 2008. https://doi.org/10.2312/SCA/SCA08/057-066.
ieee: 'B. Bickel, M. Lang, M. Botsch, M. Otaduy, and M. Gross, “Pose-space animation
and transfer of facial details,” presented at the SIGGRAPH: Eurographics Symposium
on Computer Animation, 2008, pp. 57–66.'
ista: 'Bickel B, Lang M, Botsch M, Otaduy M, Gross M. 2008. Pose-space animation
and transfer of facial details. SIGGRAPH: Eurographics Symposium on Computer Animation,
57–66.'
mla: Bickel, Bernd, et al. Pose-Space Animation and Transfer of Facial Details.
ACM, 2008, pp. 57–66, doi:10.2312/SCA/SCA08/057-066.
short: B. Bickel, M. Lang, M. Botsch, M. Otaduy, M. Gross, in:, ACM, 2008, pp. 57–66.
conference:
name: 'SIGGRAPH: Eurographics Symposium on Computer Animation'
date_created: 2018-12-11T11:55:35Z
date_published: 2008-01-01T00:00:00Z
date_updated: 2021-01-12T06:55:10Z
doi: 10.2312/SCA/SCA08/057-066
extern: '1'
language:
- iso: eng
oa_version: None
page: 57 - 66
publication_status: published
publisher: ACM
publist_id: '4960'
status: public
title: Pose-space animation and transfer of facial details
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2008'
...
---
_id: '2120'
abstract:
- lang: eng
text: 'We consider the linear stochastic Cauchy problem dX (t) =AX (t) dt +B dWH
(t), t≥ 0, where A generates a C0-semigroup on a Banach space E, WH is a cylindrical
Brownian motion over a Hilbert space H, and B: H → E is a bounded operator. Assuming
the existence of a unique minimal invariant measure μ∞, let Lp denote the realization
of the Ornstein-Uhlenbeck operator associated with this problem in Lp (E, μ∞).
Under suitable assumptions concerning the invariance of the range of B under the
semigroup generated by A, we prove the following domain inclusions, valid for
1 < p ≤ 2: Image omitted. Here WHk, p (E, μinfin; denotes the kth order Sobolev
space of functions with Fréchet derivatives up to order k in the direction of
H. No symmetry assumptions are made on L p.'
acknowledgement: The authors are supported by the ‘VIDI subsidie’ 639.032.201 of the
Netherlands Organization for Scientific Research (NWO) and by the Research Training
Network HPRN-CT-2002-00281.
author:
- first_name: Jan
full_name: Jan Maas
id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
last_name: Maas
orcid: 0000-0002-0845-1338
- first_name: Jan
full_name: van Neerven, Jan M
last_name: Van Neerven
citation:
ama: Maas J, Van Neerven J. On the domain of non-symmetric Ornstein-Uhlenbeck operators
in banach spaces. Infinite Dimensional Analysis, Quantum Probability and Related
Topics. 2008;11(4):603-626. doi:10.1142/S0219025708003245
apa: Maas, J., & Van Neerven, J. (2008). On the domain of non-symmetric Ornstein-Uhlenbeck
operators in banach spaces. Infinite Dimensional Analysis, Quantum Probability
and Related Topics. World Scientific Publishing. https://doi.org/10.1142/S0219025708003245
chicago: Maas, Jan, and Jan Van Neerven. “On the Domain of Non-Symmetric Ornstein-Uhlenbeck
Operators in Banach Spaces.” Infinite Dimensional Analysis, Quantum Probability
and Related Topics. World Scientific Publishing, 2008. https://doi.org/10.1142/S0219025708003245.
ieee: J. Maas and J. Van Neerven, “On the domain of non-symmetric Ornstein-Uhlenbeck
operators in banach spaces,” Infinite Dimensional Analysis, Quantum Probability
and Related Topics, vol. 11, no. 4. World Scientific Publishing, pp. 603–626,
2008.
ista: Maas J, Van Neerven J. 2008. On the domain of non-symmetric Ornstein-Uhlenbeck
operators in banach spaces. Infinite Dimensional Analysis, Quantum Probability
and Related Topics. 11(4), 603–626.
mla: Maas, Jan, and Jan Van Neerven. “On the Domain of Non-Symmetric Ornstein-Uhlenbeck
Operators in Banach Spaces.” Infinite Dimensional Analysis, Quantum Probability
and Related Topics, vol. 11, no. 4, World Scientific Publishing, 2008, pp.
603–26, doi:10.1142/S0219025708003245.
short: J. Maas, J. Van Neerven, Infinite Dimensional Analysis, Quantum Probability
and Related Topics 11 (2008) 603–626.
date_created: 2018-12-11T11:55:50Z
date_published: 2008-12-04T00:00:00Z
date_updated: 2021-01-12T06:55:26Z
day: '04'
doi: 10.1142/S0219025708003245
extern: 1
intvolume: ' 11'
issue: '4'
main_file_link:
- open_access: '1'
url: http://repository.tudelft.nl/view/ir/uuid:c8eca915-d38b-4827-a4d9-e89baabb43a6/
month: '12'
oa: 1
page: 603 - 626
publication: Infinite Dimensional Analysis, Quantum Probability and Related Topics
publication_status: published
publisher: World Scientific Publishing
publist_id: '4914'
quality_controlled: 0
status: public
title: On the domain of non-symmetric Ornstein-Uhlenbeck operators in banach spaces
type: journal_article
volume: 11
year: '2008'
...
---
_id: '2121'
abstract:
- lang: eng
text: Let H be a separable real Hubert space and let double struck F sign = (ℱt)t∈[0,T]
be the augmented filtration generated by an H-cylindrical Brownian motion (WH(t))t∈[0,T]
on a probability space (Ω, ℱ ℙ). We prove that if E is a UMD Banach space, 1 ≤
p < ∞, and F ∈ double struck D sign1,p(Ω E) is ℱT-measurable, then F = double
struck E sign(F) + ∫0T Pdouble struck F sign(DF) dW H, where D is the Malliavin
derivative of F and P double struck F sign is the projection onto the F-adapted
elements in a suitable Banach space of Lp-stochastically integrable ℒ(H, E)-valued
processes.
acknowledgement: 'Research supported by ARC Discovery Grant dp0558539. 2research supported
by VIDI subsidy 639.032.201 and VICI subsidy 639.033.604 of the Netherlands organisation
for scientific research (nwo). '
author:
- first_name: Jan
full_name: van Neerven, Jan M
last_name: Van Neerven
- first_name: Jan
full_name: Jan Maas
id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
last_name: Maas
orcid: 0000-0002-0845-1338
citation:
ama: Van Neerven J, Maas J. A Clark-Ocone formula in UMD Banach spaces. Electronic
Communications in Probability. 2008;13:151-164.
apa: Van Neerven, J., & Maas, J. (2008). A Clark-Ocone formula in UMD Banach
spaces. Electronic Communications in Probability. Institute of Mathematical
Statistics.
chicago: Van Neerven, Jan, and Jan Maas. “A Clark-Ocone Formula in UMD Banach Spaces.”
Electronic Communications in Probability. Institute of Mathematical Statistics,
2008.
ieee: J. Van Neerven and J. Maas, “A Clark-Ocone formula in UMD Banach spaces,”
Electronic Communications in Probability, vol. 13. Institute of Mathematical
Statistics, pp. 151–164, 2008.
ista: Van Neerven J, Maas J. 2008. A Clark-Ocone formula in UMD Banach spaces. Electronic
Communications in Probability. 13, 151–164.
mla: Van Neerven, Jan, and Jan Maas. “A Clark-Ocone Formula in UMD Banach Spaces.”
Electronic Communications in Probability, vol. 13, Institute of Mathematical
Statistics, 2008, pp. 151–64.
short: J. Van Neerven, J. Maas, Electronic Communications in Probability 13 (2008)
151–164.
date_created: 2018-12-11T11:55:50Z
date_published: 2008-04-07T00:00:00Z
date_updated: 2021-01-12T06:55:26Z
day: '07'
extern: 1
intvolume: ' 13'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0709.2021
month: '04'
oa: 1
page: 151 - 164
publication: Electronic Communications in Probability
publication_status: published
publisher: Institute of Mathematical Statistics
publist_id: '4915'
quality_controlled: 0
status: public
title: A Clark-Ocone formula in UMD Banach spaces
type: journal_article
volume: 13
year: '2008'
...
---
_id: '2146'
abstract:
- lang: eng
text: 'We present an analytic model of thermal state-to-state rotationally inelastic
collisions of polar molecules in electric fields. The model is based on the Fraunhofer
scattering of matter waves and requires Legendre moments characterizing the “shape”
of the target in the body-fixed frame as its input. The electric field orients
the target in the space-fixed frame and thereby effects a striking alteration
of the dynamical observables: both the phase and amplitude of the oscillations
in the partial differential cross sections undergo characteristic field-dependent
changes that transgress into the partial integral cross sections. As the cross
sections can be evaluated for a field applied parallel or perpendicular to the
relative velocity, the model also offers predictions about steric asymmetry. We
exemplify the field-dependent quantum collision dynamics with the behavior of
the Ne–OCS(Σ1) and Ar–NO(Π2) systems. A comparison with the close-coupling calculations
available for the latter system [Chem. Phys. Lett.313, 491 (1999)] demonstrates
the model’s ability to qualitatively explain the field dependence of all the scattering
features observed.'
author:
- first_name: Mikhail
full_name: Mikhail Lemeshko
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
- first_name: Břetislav
full_name: Friedrich, Břetislav
last_name: Friedrich
citation:
ama: Lemeshko M, Friedrich B. An analytic model of rotationally inelastic collisions
of polar molecules in electric fields. Journal of Chemical Physics. 2008;129(2).
doi:10.1063/1.2948392
apa: Lemeshko, M., & Friedrich, B. (2008). An analytic model of rotationally
inelastic collisions of polar molecules in electric fields. Journal of Chemical
Physics. American Institute of Physics. https://doi.org/10.1063/1.2948392
chicago: Lemeshko, Mikhail, and Břetislav Friedrich. “An Analytic Model of Rotationally
Inelastic Collisions of Polar Molecules in Electric Fields.” Journal of Chemical
Physics. American Institute of Physics, 2008. https://doi.org/10.1063/1.2948392.
ieee: M. Lemeshko and B. Friedrich, “An analytic model of rotationally inelastic
collisions of polar molecules in electric fields,” Journal of Chemical Physics,
vol. 129, no. 2. American Institute of Physics, 2008.
ista: Lemeshko M, Friedrich B. 2008. An analytic model of rotationally inelastic
collisions of polar molecules in electric fields. Journal of Chemical Physics.
129(2).
mla: Lemeshko, Mikhail, and Břetislav Friedrich. “An Analytic Model of Rotationally
Inelastic Collisions of Polar Molecules in Electric Fields.” Journal of Chemical
Physics, vol. 129, no. 2, American Institute of Physics, 2008, doi:10.1063/1.2948392.
short: M. Lemeshko, B. Friedrich, Journal of Chemical Physics 129 (2008).
date_created: 2018-12-11T11:55:58Z
date_published: 2008-07-01T00:00:00Z
date_updated: 2021-01-12T06:55:35Z
day: '01'
doi: 10.1063/1.2948392
extern: 1
intvolume: ' 129'
issue: '2'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0804.3318
month: '07'
oa: 1
publication: Journal of Chemical Physics
publication_status: published
publisher: American Institute of Physics
publist_id: '4878'
quality_controlled: 0
status: public
title: An analytic model of rotationally inelastic collisions of polar molecules in
electric fields
type: journal_article
volume: 129
year: '2008'
...