---
_id: '1766'
abstract:
- lang: eng
  text: We demonstrate the time-resolved driving of two-photon blue sideband transitions
    between superconducting qubits and a transmission line resonator. As an example
    of using these sideband transitions for a two-qubit operation, we implement a
    pulse sequence that first entangles one qubit with the resonator and subsequently
    distributes the entanglement between two qubits. We show the generation of 75%
    fidelity Bell states by this method. The full density matrix of the two-qubit
    system is extracted using joint measurement and quantum state tomography and shows
    close agreement with numerical simulation.
acknowledgement: This work was supported by ETH Zurich, the Swiss National Science
  Foundation, and by the EC via the EuroSQIP project and the Marie-Curie program (P.
  J. L.)
author:
- first_name: Peter
  full_name: Leek, Peter J
  last_name: Leek
- first_name: Stefan
  full_name: Filipp, Stefan
  last_name: Filipp
- first_name: Patrick
  full_name: Maurer, Patrick
  last_name: Maurer
- first_name: Matthias
  full_name: Baur, Matthias P
  last_name: Baur
- first_name: R
  full_name: Bianchetti, R
  last_name: Bianchetti
- first_name: Johannes M
  full_name: Johannes Fink
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: M
  full_name: Göppl, M
  last_name: Göppl
- first_name: L.
  full_name: Steffen, L. Kraig
  last_name: Steffen
- first_name: Andreas
  full_name: Wallraff, Andreas
  last_name: Wallraff
citation:
  ama: Leek P, Filipp S, Maurer P, et al. Using sideband transitions for two-qubit
    operations in superconducting circuits. <i>Physical Review B - Condensed Matter
    and Materials Physics</i>. 2009;79(18). doi:<a href="https://doi.org/10.1103/PhysRevB.79.180511">10.1103/PhysRevB.79.180511</a>
  apa: Leek, P., Filipp, S., Maurer, P., Baur, M., Bianchetti, R., Fink, J. M., …
    Wallraff, A. (2009). Using sideband transitions for two-qubit operations in superconducting
    circuits. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevB.79.180511">https://doi.org/10.1103/PhysRevB.79.180511</a>
  chicago: Leek, Peter, Stefan Filipp, Patrick Maurer, Matthias Baur, R Bianchetti,
    Johannes M Fink, M Göppl, L. Steffen, and Andreas Wallraff. “Using Sideband Transitions
    for Two-Qubit Operations in Superconducting Circuits.” <i>Physical Review B -
    Condensed Matter and Materials Physics</i>. American Physical Society, 2009. <a
    href="https://doi.org/10.1103/PhysRevB.79.180511">https://doi.org/10.1103/PhysRevB.79.180511</a>.
  ieee: P. Leek <i>et al.</i>, “Using sideband transitions for two-qubit operations
    in superconducting circuits,” <i>Physical Review B - Condensed Matter and Materials
    Physics</i>, vol. 79, no. 18. American Physical Society, 2009.
  ista: Leek P, Filipp S, Maurer P, Baur M, Bianchetti R, Fink JM, Göppl M, Steffen
    L, Wallraff A. 2009. Using sideband transitions for two-qubit operations in superconducting
    circuits. Physical Review B - Condensed Matter and Materials Physics. 79(18).
  mla: Leek, Peter, et al. “Using Sideband Transitions for Two-Qubit Operations in
    Superconducting Circuits.” <i>Physical Review B - Condensed Matter and Materials
    Physics</i>, vol. 79, no. 18, American Physical Society, 2009, doi:<a href="https://doi.org/10.1103/PhysRevB.79.180511">10.1103/PhysRevB.79.180511</a>.
  short: P. Leek, S. Filipp, P. Maurer, M. Baur, R. Bianchetti, J.M. Fink, M. Göppl,
    L. Steffen, A. Wallraff, Physical Review B - Condensed Matter and Materials Physics
    79 (2009).
date_created: 2018-12-11T11:53:54Z
date_published: 2009-05-01T00:00:00Z
date_updated: 2021-01-12T06:53:04Z
day: '01'
doi: 10.1103/PhysRevB.79.180511
extern: 1
intvolume: '        79'
issue: '18'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0812.2678
month: '05'
oa: 1
publication: Physical Review B - Condensed Matter and Materials Physics
publication_status: published
publisher: American Physical Society
publist_id: '5354'
quality_controlled: 0
status: public
title: Using sideband transitions for two-qubit operations in superconducting circuits
type: journal_article
volume: 79
year: '2009'
...
---
_id: '1767'
abstract:
- lang: eng
  text: We present spectroscopic measurements of the Autler-Townes doublet and the
    sidebands of the Mollow triplet in a driven superconducting qubit. The ground
    to first excited state transition of the qubit is strongly pumped while the resulting
    dressed qubit spectrum is probed with a weak tone. The corresponding transitions
    are detected using dispersive readout of the qubit coupled off resonantly to a
    microwave transmission line resonator. The observed frequencies of the Autler-Townes
    and Mollow spectral lines are in good agreement with a dispersive Jaynes-Cummings
    model taking into account higher excited qubit states and dispersive level shifts
    due to off-resonant drives.
acknowledgement: This work was supported by the Swiss National Science Foundation
  and by ETH Zürich. P. J. L. acknowledges support from the EC via an Intra-European
  Marie-Curie Fellowship. A. B. was supported by NSERC, CIFAR, FQRNT, and Alfred P.
  Sloan Foundation
author:
- first_name: Matthias
  full_name: Baur, Matthias P
  last_name: Baur
- first_name: Stefan
  full_name: Filipp, Stefan
  last_name: Filipp
- first_name: R
  full_name: Bianchetti, R
  last_name: Bianchetti
- first_name: Johannes M
  full_name: Johannes Fink
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: M
  full_name: Göppl, M
  last_name: Göppl
- first_name: L.
  full_name: Steffen, L. Kraig
  last_name: Steffen
- first_name: Peter
  full_name: Leek, Peter J
  last_name: Leek
- first_name: Alexandre
  full_name: Blais, Alexandre
  last_name: Blais
- first_name: Andreas
  full_name: Wallraff, Andreas
  last_name: Wallraff
citation:
  ama: Baur M, Filipp S, Bianchetti R, et al. Measurement of autler-townes and mollow
    transitions in a strongly driven superconducting qubit. <i>Physical Review Letters</i>.
    2009;102(24). doi:<a href="https://doi.org/10.1103/PhysRevLett.102.243602">10.1103/PhysRevLett.102.243602</a>
  apa: Baur, M., Filipp, S., Bianchetti, R., Fink, J. M., Göppl, M., Steffen, L.,
    … Wallraff, A. (2009). Measurement of autler-townes and mollow transitions in
    a strongly driven superconducting qubit. <i>Physical Review Letters</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.102.243602">https://doi.org/10.1103/PhysRevLett.102.243602</a>
  chicago: Baur, Matthias, Stefan Filipp, R Bianchetti, Johannes M Fink, M Göppl,
    L. Steffen, Peter Leek, Alexandre Blais, and Andreas Wallraff. “Measurement of
    Autler-Townes and Mollow Transitions in a Strongly Driven Superconducting Qubit.”
    <i>Physical Review Letters</i>. American Physical Society, 2009. <a href="https://doi.org/10.1103/PhysRevLett.102.243602">https://doi.org/10.1103/PhysRevLett.102.243602</a>.
  ieee: M. Baur <i>et al.</i>, “Measurement of autler-townes and mollow transitions
    in a strongly driven superconducting qubit,” <i>Physical Review Letters</i>, vol.
    102, no. 24. American Physical Society, 2009.
  ista: Baur M, Filipp S, Bianchetti R, Fink JM, Göppl M, Steffen L, Leek P, Blais
    A, Wallraff A. 2009. Measurement of autler-townes and mollow transitions in a
    strongly driven superconducting qubit. Physical Review Letters. 102(24).
  mla: Baur, Matthias, et al. “Measurement of Autler-Townes and Mollow Transitions
    in a Strongly Driven Superconducting Qubit.” <i>Physical Review Letters</i>, vol.
    102, no. 24, American Physical Society, 2009, doi:<a href="https://doi.org/10.1103/PhysRevLett.102.243602">10.1103/PhysRevLett.102.243602</a>.
  short: M. Baur, S. Filipp, R. Bianchetti, J.M. Fink, M. Göppl, L. Steffen, P. Leek,
    A. Blais, A. Wallraff, Physical Review Letters 102 (2009).
date_created: 2018-12-11T11:53:54Z
date_published: 2009-06-19T00:00:00Z
date_updated: 2021-01-12T06:53:04Z
day: '19'
doi: 10.1103/PhysRevLett.102.243602
extern: 1
intvolume: '       102'
issue: '24'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0812.4384
month: '06'
oa: 1
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '5352'
quality_controlled: 0
status: public
title: Measurement of autler-townes and mollow transitions in a strongly driven superconducting
  qubit
type: journal_article
volume: 102
year: '2009'
...
---
_id: '1768'
abstract:
- lang: eng
  text: Quantum state tomography is an important tool in quantum information science
    for complete characterization of multiqubit states and their correlations. Here
    we report a method to perform a joint simultaneous readout of two superconducting
    qubits dispersively coupled to the same mode of a microwave transmission line
    resonator. The nonlinear dependence of the resonator transmission on the qubit
    state dependent cavity frequency allows us to extract the full two-qubit correlations
    without the need for single-shot readout of individual qubits. We employ standard
    tomographic techniques to reconstruct the density matrix of two-qubit quantum
    states.
acknowledgement: This work was supported by Swiss National Science Foundation (SNF)
  and ETH Zurich. P. J. L. was supported by the EC with a MC-EIF, J. M. G. by CIFAR,
  MRI, MITACS, and NSERC, and A. B. by NSERC and CIFAR
author:
- first_name: Stefan
  full_name: Filipp, Stefan
  last_name: Filipp
- first_name: Patrick
  full_name: Maurer, Patrick
  last_name: Maurer
- first_name: Peter
  full_name: Leek, Peter J
  last_name: Leek
- first_name: Matthias
  full_name: Baur, Matthias P
  last_name: Baur
- first_name: R
  full_name: Bianchetti, R
  last_name: Bianchetti
- first_name: Johannes M
  full_name: Johannes Fink
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: M
  full_name: Göppl, M
  last_name: Göppl
- first_name: L.
  full_name: Steffen, L. Kraig
  last_name: Steffen
- first_name: Jay
  full_name: Gambetta, Jay M
  last_name: Gambetta
- first_name: Alexandre
  full_name: Blais, Alexandre
  last_name: Blais
- first_name: Andreas
  full_name: Wallraff, Andreas
  last_name: Wallraff
citation:
  ama: Filipp S, Maurer P, Leek P, et al. Two-qubit state tomography using a joint
    dispersive readout. <i>Physical Review Letters</i>. 2009;102(20). doi:<a href="https://doi.org/10.1103/PhysRevLett.102.200402">10.1103/PhysRevLett.102.200402</a>
  apa: Filipp, S., Maurer, P., Leek, P., Baur, M., Bianchetti, R., Fink, J. M., …
    Wallraff, A. (2009). Two-qubit state tomography using a joint dispersive readout.
    <i>Physical Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.102.200402">https://doi.org/10.1103/PhysRevLett.102.200402</a>
  chicago: Filipp, Stefan, Patrick Maurer, Peter Leek, Matthias Baur, R Bianchetti,
    Johannes M Fink, M Göppl, et al. “Two-Qubit State Tomography Using a Joint Dispersive
    Readout.” <i>Physical Review Letters</i>. American Physical Society, 2009. <a
    href="https://doi.org/10.1103/PhysRevLett.102.200402">https://doi.org/10.1103/PhysRevLett.102.200402</a>.
  ieee: S. Filipp <i>et al.</i>, “Two-qubit state tomography using a joint dispersive
    readout,” <i>Physical Review Letters</i>, vol. 102, no. 20. American Physical
    Society, 2009.
  ista: Filipp S, Maurer P, Leek P, Baur M, Bianchetti R, Fink JM, Göppl M, Steffen
    L, Gambetta J, Blais A, Wallraff A. 2009. Two-qubit state tomography using a joint
    dispersive readout. Physical Review Letters. 102(20).
  mla: Filipp, Stefan, et al. “Two-Qubit State Tomography Using a Joint Dispersive
    Readout.” <i>Physical Review Letters</i>, vol. 102, no. 20, American Physical
    Society, 2009, doi:<a href="https://doi.org/10.1103/PhysRevLett.102.200402">10.1103/PhysRevLett.102.200402</a>.
  short: S. Filipp, P. Maurer, P. Leek, M. Baur, R. Bianchetti, J.M. Fink, M. Göppl,
    L. Steffen, J. Gambetta, A. Blais, A. Wallraff, Physical Review Letters 102 (2009).
date_created: 2018-12-11T11:53:54Z
date_published: 2009-05-18T00:00:00Z
date_updated: 2021-01-12T06:53:04Z
day: '18'
doi: 10.1103/PhysRevLett.102.200402
extern: 1
intvolume: '       102'
issue: '20'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0812.2485
month: '05'
oa: 1
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '5353'
quality_controlled: 0
status: public
title: Two-qubit state tomography using a joint dispersive readout
type: journal_article
volume: 102
year: '2009'
...
---
_id: '1769'
abstract:
- lang: eng
  text: We present an ideal realization of the Tavis-Cummings model in the absence
    of atom number and coupling fluctuations by embedding a discrete number of fully
    controllable superconducting qubits at fixed positions into a transmission line
    resonator. Measuring the vacuum Rabi mode splitting with one, two, and three qubits
    strongly coupled to the cavity field, we explore both bright and dark dressed
    collective multiqubit states and observe the discrete N scaling of the collective
    dipole coupling strength. Our experiments demonstrate a novel approach to explore
    collective states, such as the W state, in a fully globally and locally controllable
    quantum system. Our scalable approach is interesting for solid-state quantum information
    processing and for fundamental multiatom quantum optics experiments with fixed
    atom numbers.
acknowledgement: This work was supported by SNF Grant No. 200021-111899 and ETHZ.
  P. J. L. was supported by the EU with a MC-EIF. A. B. was supported by NSERC, CIFAR,
  and the Alfred P. Sloan Foundation
author:
- first_name: Johannes M
  full_name: Johannes Fink
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: R
  full_name: Bianchetti, R
  last_name: Bianchetti
- first_name: Matthias
  full_name: Baur, Matthias P
  last_name: Baur
- first_name: M
  full_name: Göppl, M
  last_name: Göppl
- first_name: L.
  full_name: Steffen, L. Kraig
  last_name: Steffen
- first_name: Stefan
  full_name: Filipp, Stefan
  last_name: Filipp
- first_name: Peter
  full_name: Leek, Peter J
  last_name: Leek
- first_name: Alexandre
  full_name: Blais, Alexandre
  last_name: Blais
- first_name: Andreas
  full_name: Wallraff, Andreas
  last_name: Wallraff
citation:
  ama: Fink JM, Bianchetti R, Baur M, et al. Dressed collective qubit states and the
    Tavis-Cummings model in circuit QED. <i>Physical Review Letters</i>. 2009;103(8).
    doi:<a href="https://doi.org/10.1103/PhysRevLett.103.083601">10.1103/PhysRevLett.103.083601</a>
  apa: Fink, J. M., Bianchetti, R., Baur, M., Göppl, M., Steffen, L., Filipp, S.,
    … Wallraff, A. (2009). Dressed collective qubit states and the Tavis-Cummings
    model in circuit QED. <i>Physical Review Letters</i>. American Physical Society.
    <a href="https://doi.org/10.1103/PhysRevLett.103.083601">https://doi.org/10.1103/PhysRevLett.103.083601</a>
  chicago: Fink, Johannes M, R Bianchetti, Matthias Baur, M Göppl, L. Steffen, Stefan
    Filipp, Peter Leek, Alexandre Blais, and Andreas Wallraff. “Dressed Collective
    Qubit States and the Tavis-Cummings Model in Circuit QED.” <i>Physical Review
    Letters</i>. American Physical Society, 2009. <a href="https://doi.org/10.1103/PhysRevLett.103.083601">https://doi.org/10.1103/PhysRevLett.103.083601</a>.
  ieee: J. M. Fink <i>et al.</i>, “Dressed collective qubit states and the Tavis-Cummings
    model in circuit QED,” <i>Physical Review Letters</i>, vol. 103, no. 8. American
    Physical Society, 2009.
  ista: Fink JM, Bianchetti R, Baur M, Göppl M, Steffen L, Filipp S, Leek P, Blais
    A, Wallraff A. 2009. Dressed collective qubit states and the Tavis-Cummings model
    in circuit QED. Physical Review Letters. 103(8).
  mla: Fink, Johannes M., et al. “Dressed Collective Qubit States and the Tavis-Cummings
    Model in Circuit QED.” <i>Physical Review Letters</i>, vol. 103, no. 8, American
    Physical Society, 2009, doi:<a href="https://doi.org/10.1103/PhysRevLett.103.083601">10.1103/PhysRevLett.103.083601</a>.
  short: J.M. Fink, R. Bianchetti, M. Baur, M. Göppl, L. Steffen, S. Filipp, P. Leek,
    A. Blais, A. Wallraff, Physical Review Letters 103 (2009).
date_created: 2018-12-11T11:53:55Z
date_published: 2009-08-17T00:00:00Z
date_updated: 2021-01-12T06:53:05Z
day: '17'
doi: 10.1103/PhysRevLett.103.083601
extern: 1
intvolume: '       103'
issue: '8'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0812.2651
month: '08'
oa: 1
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '5350'
quality_controlled: 0
status: public
title: Dressed collective qubit states and the Tavis-Cummings model in circuit QED
type: journal_article
volume: 103
year: '2009'
...
---
_id: '1770'
abstract:
- lang: eng
  text: The quantum state of a superconducting qubit nonresonantly coupled to a transmission
    line resonator can be determined by measuring the quadrature amplitudes of an
    electromagnetic field transmitted through the resonator. We present experiments
    in which we analyze in detail the dynamics of the transmitted field as a function
    of the measurement frequency for both weak continuous and pulsed measurements.
    We find excellent agreement between our data and calculations based on a set of
    Bloch-type differential equations for the cavity field derived from the dispersive
    Jaynes-Cummings Hamiltonian including dissipation. We show that the measured system
    response can be used to construct a measurement operator from which the qubit
    population can be inferred accurately. Such a measurement operator can be used
    in tomographic methods to reconstruct single and multiqubit states in ensemble-averaged
    measurements.
acknowledgement: This work was supported by the SNF Project No. 111899 and ETH Zurich.
  A.B. was supported by NSERC, CIFAR, and the Alfred P. Sloan Foundation
author:
- first_name: R
  full_name: Bianchetti, R
  last_name: Bianchetti
- first_name: Stefan
  full_name: Filipp, Stefan
  last_name: Filipp
- first_name: Matthias
  full_name: Baur, Matthias P
  last_name: Baur
- first_name: Johannes M
  full_name: Johannes Fink
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: M
  full_name: Göppl, M
  last_name: Göppl
- first_name: Peter
  full_name: Leek, Peter J
  last_name: Leek
- first_name: L.
  full_name: Steffen, L. Kraig
  last_name: Steffen
- first_name: Alexandre
  full_name: Blais, Alexandre
  last_name: Blais
- first_name: Andreas
  full_name: Wallraff, Andreas
  last_name: Wallraff
citation:
  ama: Bianchetti R, Filipp S, Baur M, et al. Dynamics of dispersive single-qubit
    readout in circuit quantum electrodynamics. <i>Physical Review A - Atomic, Molecular,
    and Optical Physics</i>. 2009;80(4). doi:<a href="https://doi.org/10.1103/PhysRevA.80.043840">10.1103/PhysRevA.80.043840</a>
  apa: Bianchetti, R., Filipp, S., Baur, M., Fink, J. M., Göppl, M., Leek, P., … Wallraff,
    A. (2009). Dynamics of dispersive single-qubit readout in circuit quantum electrodynamics.
    <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical
    Society. <a href="https://doi.org/10.1103/PhysRevA.80.043840">https://doi.org/10.1103/PhysRevA.80.043840</a>
  chicago: Bianchetti, R, Stefan Filipp, Matthias Baur, Johannes M Fink, M Göppl,
    Peter Leek, L. Steffen, Alexandre Blais, and Andreas Wallraff. “Dynamics of Dispersive
    Single-Qubit Readout in Circuit Quantum Electrodynamics.” <i>Physical Review A
    - Atomic, Molecular, and Optical Physics</i>. American Physical Society, 2009.
    <a href="https://doi.org/10.1103/PhysRevA.80.043840">https://doi.org/10.1103/PhysRevA.80.043840</a>.
  ieee: R. Bianchetti <i>et al.</i>, “Dynamics of dispersive single-qubit readout
    in circuit quantum electrodynamics,” <i>Physical Review A - Atomic, Molecular,
    and Optical Physics</i>, vol. 80, no. 4. American Physical Society, 2009.
  ista: Bianchetti R, Filipp S, Baur M, Fink JM, Göppl M, Leek P, Steffen L, Blais
    A, Wallraff A. 2009. Dynamics of dispersive single-qubit readout in circuit quantum
    electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. 80(4).
  mla: Bianchetti, R., et al. “Dynamics of Dispersive Single-Qubit Readout in Circuit
    Quantum Electrodynamics.” <i>Physical Review A - Atomic, Molecular, and Optical
    Physics</i>, vol. 80, no. 4, American Physical Society, 2009, doi:<a href="https://doi.org/10.1103/PhysRevA.80.043840">10.1103/PhysRevA.80.043840</a>.
  short: R. Bianchetti, S. Filipp, M. Baur, J.M. Fink, M. Göppl, P. Leek, L. Steffen,
    A. Blais, A. Wallraff, Physical Review A - Atomic, Molecular, and Optical Physics
    80 (2009).
date_created: 2018-12-11T11:53:55Z
date_published: 2009-10-30T00:00:00Z
date_updated: 2021-01-12T06:53:05Z
day: '30'
doi: 10.1103/PhysRevA.80.043840
extern: 1
intvolume: '        80'
issue: '4'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0907.2549
month: '10'
oa: 1
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '5349'
quality_controlled: 0
status: public
title: Dynamics of dispersive single-qubit readout in circuit quantum electrodynamics
type: journal_article
volume: 80
year: '2009'
...
---
_id: '1771'
abstract:
- lang: eng
  text: The exceptionally strong coupling realizable between superconducting qubits
    and photons stored in an on-chip microwave resonator allows for the detailed study
    of matter-light interactions in the realm of circuit quantum electrodynamics (QED).
    Here we investigate the resonant interaction between a single transmon-type multilevel
    artificial atom and weak thermal and coherent fields. We explore up to three photon
    dressed states of the coupled system in a linear response heterodyne transmission
    measurement. The results are in good quantitative agreement with a generalized
    Jaynes-Cummings model. Our data indicate that the role of thermal fields in resonant
    cavity QED can be studied in detail using superconducting circuits.
acknowledgement: Nobel Foundation
author:
- first_name: Johannes M
  full_name: Johannes Fink
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: Matthias
  full_name: Baur, Matthias P
  last_name: Baur
- first_name: R
  full_name: Bianchetti, R
  last_name: Bianchetti
- first_name: Stefan
  full_name: Filipp, Stefan
  last_name: Filipp
- first_name: M
  full_name: Göppl, M
  last_name: Göppl
- first_name: Peter
  full_name: Leek, Peter J
  last_name: Leek
- first_name: L.
  full_name: Steffen, L. Kraig
  last_name: Steffen
- first_name: Alexandre
  full_name: Blais, Alexandre
  last_name: Blais
- first_name: Andreas
  full_name: Wallraff, Andreas
  last_name: Wallraff
citation:
  ama: Fink JM, Baur M, Bianchetti R, et al. Thermal excitation of multi-photon dressed
    states in circuit quantum electrodynamics. <i>Physica Scripta T</i>. 2009;T137.
    doi:<a href="https://doi.org/10.1088/0031-8949/2009/T137/014013">10.1088/0031-8949/2009/T137/014013</a>
  apa: Fink, J. M., Baur, M., Bianchetti, R., Filipp, S., Göppl, M., Leek, P., … Wallraff,
    A. (2009). Thermal excitation of multi-photon dressed states in circuit quantum
    electrodynamics. <i>Physica Scripta T</i>. IOP Publishing Ltd. <a href="https://doi.org/10.1088/0031-8949/2009/T137/014013">https://doi.org/10.1088/0031-8949/2009/T137/014013</a>
  chicago: Fink, Johannes M, Matthias Baur, R Bianchetti, Stefan Filipp, M Göppl,
    Peter Leek, L. Steffen, Alexandre Blais, and Andreas Wallraff. “Thermal Excitation
    of Multi-Photon Dressed States in Circuit Quantum Electrodynamics.” <i>Physica
    Scripta T</i>. IOP Publishing Ltd., 2009. <a href="https://doi.org/10.1088/0031-8949/2009/T137/014013">https://doi.org/10.1088/0031-8949/2009/T137/014013</a>.
  ieee: J. M. Fink <i>et al.</i>, “Thermal excitation of multi-photon dressed states
    in circuit quantum electrodynamics,” <i>Physica Scripta T</i>, vol. T137. IOP
    Publishing Ltd., 2009.
  ista: Fink JM, Baur M, Bianchetti R, Filipp S, Göppl M, Leek P, Steffen L, Blais
    A, Wallraff A. 2009. Thermal excitation of multi-photon dressed states in circuit
    quantum electrodynamics. Physica Scripta T. T137.
  mla: Fink, Johannes M., et al. “Thermal Excitation of Multi-Photon Dressed States
    in Circuit Quantum Electrodynamics.” <i>Physica Scripta T</i>, vol. T137, IOP
    Publishing Ltd., 2009, doi:<a href="https://doi.org/10.1088/0031-8949/2009/T137/014013">10.1088/0031-8949/2009/T137/014013</a>.
  short: J.M. Fink, M. Baur, R. Bianchetti, S. Filipp, M. Göppl, P. Leek, L. Steffen,
    A. Blais, A. Wallraff, Physica Scripta T T137 (2009).
date_created: 2018-12-11T11:53:55Z
date_published: 2009-01-01T00:00:00Z
date_updated: 2021-01-12T06:53:06Z
day: '01'
doi: 10.1088/0031-8949/2009/T137/014013
extern: 1
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0911.3797
month: '01'
oa: 1
publication: Physica Scripta T
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '5348'
quality_controlled: 0
status: public
title: Thermal excitation of multi-photon dressed states in circuit quantum electrodynamics
type: journal_article
volume: T137
year: '2009'
...
---
_id: '1798'
abstract:
- lang: eng
  text: The mammalian brain is assembled from thousands of neuronal cell types that
    are organized in distinct circuits to perform behaviorally relevant computations.
    Transgenic mouse lines with selectively marked cell types would facilitate our
    ability to dissect functional components of complex circuits. We carried out a
    screen for cell type-specific green fluorescent protein expression in the retina
    using BAC transgenic mice from the GENSAT project. Among others, we identified
    mouse lines in which the inhibitory cell types of the night vision and directional
    selective circuit were selectively labeled. We quantified the stratification patterns
    to predict potential synaptic connectivity between marked cells of different lines
    and found that some of the lines enabled targeted recordings and imaging of cell
    types from developing or mature retinal circuits. Our results suggest the potential
    use of a stratification-based screening approach for characterizing neuronal circuitry
    in other layered brain structures, such as the neocortex.
acknowledgement: This study was supported by Friedrich Miescher Institute funds, a
  US Office of Naval Research Naval International Cooperative Opportunities in Science
  and Technology Program grant, a Marie Curie Excellence grant, a National Center
  for Competence in Research in Genetics grant and a European Union HEALTH-F2-223156
  grant to B.R., and by National Institute of Neurological Disorders and Stroke contracts
  N01NS02331 and HHSN271200723701C to N.H.
author:
- first_name: Sandra
  full_name: Sandra Siegert
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
- first_name: Brigitte
  full_name: Scherf, Brigitte G
  last_name: Scherf
- first_name: Karina
  full_name: Del Punta, Karina
  last_name: Del Punta
- first_name: Nick
  full_name: Didkovsky, Nick
  last_name: Didkovsky
- first_name: Nathaniel
  full_name: Heintz, Nathaniel M
  last_name: Heintz
- first_name: Botond
  full_name: Roska, Botond M
  last_name: Roska
citation:
  ama: Siegert S, Scherf B, Del Punta K, Didkovsky N, Heintz N, Roska B. Genetic address
    book for retinal cell types. <i>Nature Neuroscience</i>. 2009;12(9):1197-1204.
    doi:<a href="https://doi.org/10.1038/nn.2370">10.1038/nn.2370</a>
  apa: Siegert, S., Scherf, B., Del Punta, K., Didkovsky, N., Heintz, N., &#38; Roska,
    B. (2009). Genetic address book for retinal cell types. <i>Nature Neuroscience</i>.
    Nature Publishing Group. <a href="https://doi.org/10.1038/nn.2370">https://doi.org/10.1038/nn.2370</a>
  chicago: Siegert, Sandra, Brigitte Scherf, Karina Del Punta, Nick Didkovsky, Nathaniel
    Heintz, and Botond Roska. “Genetic Address Book for Retinal Cell Types.” <i>Nature
    Neuroscience</i>. Nature Publishing Group, 2009. <a href="https://doi.org/10.1038/nn.2370">https://doi.org/10.1038/nn.2370</a>.
  ieee: S. Siegert, B. Scherf, K. Del Punta, N. Didkovsky, N. Heintz, and B. Roska,
    “Genetic address book for retinal cell types,” <i>Nature Neuroscience</i>, vol.
    12, no. 9. Nature Publishing Group, pp. 1197–1204, 2009.
  ista: Siegert S, Scherf B, Del Punta K, Didkovsky N, Heintz N, Roska B. 2009. Genetic
    address book for retinal cell types. Nature Neuroscience. 12(9), 1197–1204.
  mla: Siegert, Sandra, et al. “Genetic Address Book for Retinal Cell Types.” <i>Nature
    Neuroscience</i>, vol. 12, no. 9, Nature Publishing Group, 2009, pp. 1197–204,
    doi:<a href="https://doi.org/10.1038/nn.2370">10.1038/nn.2370</a>.
  short: S. Siegert, B. Scherf, K. Del Punta, N. Didkovsky, N. Heintz, B. Roska, Nature
    Neuroscience 12 (2009) 1197–1204.
date_created: 2018-12-11T11:54:04Z
date_published: 2009-09-01T00:00:00Z
date_updated: 2021-01-12T06:53:16Z
day: '01'
doi: 10.1038/nn.2370
extern: 1
intvolume: '        12'
issue: '9'
month: '09'
page: 1197 - 1204
publication: Nature Neuroscience
publication_status: published
publisher: Nature Publishing Group
publist_id: '5312'
quality_controlled: 0
status: public
title: Genetic address book for retinal cell types
type: journal_article
volume: 12
year: '2009'
...
---
_id: '1799'
abstract:
- lang: eng
  text: 'The detection of approaching objects, such as looming predators, is necessary
    for survival. Which neurons and circuits mediate this function? We combined genetic
    labeling of cell types, two-photon microscopy, electrophysiology and theoretical
    modeling to address this question. We identify an approach-sensitive ganglion
    cell type in the mouse retina, resolve elements of its afferent neural circuit,
    and describe how these confer approach sensitivity on the ganglion cell. The circuit''s
    essential building block is a rapid inhibitory pathway: it selectively suppresses
    responses to non-approaching objects. This rapid inhibitory pathway, which includes
    AII amacrine cells connected to bipolar cells through electrical synapses, was
    previously described in the context of night-time vision. In the daytime conditions
    of our experiments, the same pathway conveys signals in the reverse direction.
    The dual use of a neural pathway in different physiological conditions illustrates
    the efficiency with which several functions can be accommodated in a single circuit.'
acknowledgement: The study was supported by Friedrich Miescher Institute funds, a
  US Office of Naval Research Naval International Cooperative Opportunities in Science
  and Technology program grant, a Marie Curie Excellence Grant, a Human Frontier Science
  Program Young Investigator grant, a National Centers of Competence in Research in
  Genetics grant and a European Union HEALTH-F2-223156 grant to B.R., a Marie Curie
  Postdoctoral Fellowship to T.A.M., the Centre National de la Recherche Scientifique
  through the Unité Mixte de Recherche 8550 to R.A.d.S.
author:
- first_name: Thomas
  full_name: Münch, Thomas A
  last_name: Münch
- first_name: Ravá
  full_name: Da Silveira, Ravá A
  last_name: Da Silveira
- first_name: Sandra
  full_name: Sandra Siegert
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
- first_name: Tim
  full_name: Viney, Tim J
  last_name: Viney
- first_name: Gautam
  full_name: Awatramani, Gautam B
  last_name: Awatramani
- first_name: Botond
  full_name: Roska, Botond M
  last_name: Roska
citation:
  ama: Münch T, Da Silveira R, Siegert S, Viney T, Awatramani G, Roska B. Approach
    sensitivity in the retina processed by a multifunctional neural circuit. <i>Nature
    Neuroscience</i>. 2009;12(10):1308-1316. doi:<a href="https://doi.org/10.1038/nn.2389">10.1038/nn.2389</a>
  apa: Münch, T., Da Silveira, R., Siegert, S., Viney, T., Awatramani, G., &#38; Roska,
    B. (2009). Approach sensitivity in the retina processed by a multifunctional neural
    circuit. <i>Nature Neuroscience</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/nn.2389">https://doi.org/10.1038/nn.2389</a>
  chicago: Münch, Thomas, Ravá Da Silveira, Sandra Siegert, Tim Viney, Gautam Awatramani,
    and Botond Roska. “Approach Sensitivity in the Retina Processed by a Multifunctional
    Neural Circuit.” <i>Nature Neuroscience</i>. Nature Publishing Group, 2009. <a
    href="https://doi.org/10.1038/nn.2389">https://doi.org/10.1038/nn.2389</a>.
  ieee: T. Münch, R. Da Silveira, S. Siegert, T. Viney, G. Awatramani, and B. Roska,
    “Approach sensitivity in the retina processed by a multifunctional neural circuit,”
    <i>Nature Neuroscience</i>, vol. 12, no. 10. Nature Publishing Group, pp. 1308–1316,
    2009.
  ista: Münch T, Da Silveira R, Siegert S, Viney T, Awatramani G, Roska B. 2009. Approach
    sensitivity in the retina processed by a multifunctional neural circuit. Nature
    Neuroscience. 12(10), 1308–1316.
  mla: Münch, Thomas, et al. “Approach Sensitivity in the Retina Processed by a Multifunctional
    Neural Circuit.” <i>Nature Neuroscience</i>, vol. 12, no. 10, Nature Publishing
    Group, 2009, pp. 1308–16, doi:<a href="https://doi.org/10.1038/nn.2389">10.1038/nn.2389</a>.
  short: T. Münch, R. Da Silveira, S. Siegert, T. Viney, G. Awatramani, B. Roska,
    Nature Neuroscience 12 (2009) 1308–1316.
date_created: 2018-12-11T11:54:04Z
date_published: 2009-10-01T00:00:00Z
date_updated: 2021-01-12T06:53:16Z
day: '01'
doi: 10.1038/nn.2389
extern: 1
intvolume: '        12'
issue: '10'
month: '10'
page: 1308 - 1316
publication: Nature Neuroscience
publication_status: published
publisher: Nature Publishing Group
publist_id: '5311'
quality_controlled: 0
status: public
title: Approach sensitivity in the retina processed by a multifunctional neural circuit
type: journal_article
volume: 12
year: '2009'
...
---
_id: '1825'
abstract:
- lang: eng
  text: 'Many membrane channels and receptors exhibit adaptive, or desensitized, response
    to a strong sustained input stimulus. A key mechanism that underlies this response
    is the slow, activity-dependent removal of responding molecules to a pool which
    is unavailable to respond immediately to the input. This mechanism is implemented
    in different ways in various biological systems and has traditionally been studied
    separately for each. Here we highlight the common aspects of this principle, shared
    by many biological systems, and suggest a unifying theoretical framework. We study
    theoretically a class of models which describes the general mechanism and allows
    us to distinguish its universal from system-specific features. We show that under
    general conditions, regardless of the details of kinetics, molecule availability
    encodes an averaging over past activity and feeds back multiplicatively on the
    system output. The kinetics of recovery from unavailability determines the effective
    memory kernel inside the feedback branch, giving rise to a variety of system-specific
    forms of adaptive response—precise or input-dependent, exponential or power-law—as
    special cases of the same model. '
author:
- first_name: Tamar
  full_name: Tamar Friedlander
  id: 36A5845C-F248-11E8-B48F-1D18A9856A87
  last_name: Friedlander
- first_name: Naama
  full_name: Brenner, Naama
  last_name: Brenner
citation:
  ama: Friedlander T, Brenner N. Adaptive response by state-dependent inactivation.
    <i>PNAS</i>. 2009;106(52):22558-22563. doi:<a href="https://doi.org/10.1073/pnas.0902146106
    ">10.1073/pnas.0902146106 </a>
  apa: Friedlander, T., &#38; Brenner, N. (2009). Adaptive response by state-dependent
    inactivation. <i>PNAS</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.0902146106
    ">https://doi.org/10.1073/pnas.0902146106 </a>
  chicago: Friedlander, Tamar, and Naama Brenner. “Adaptive Response by State-Dependent
    Inactivation.” <i>PNAS</i>. National Academy of Sciences, 2009. <a href="https://doi.org/10.1073/pnas.0902146106
    ">https://doi.org/10.1073/pnas.0902146106 </a>.
  ieee: T. Friedlander and N. Brenner, “Adaptive response by state-dependent inactivation,”
    <i>PNAS</i>, vol. 106, no. 52. National Academy of Sciences, pp. 22558–22563,
    2009.
  ista: Friedlander T, Brenner N. 2009. Adaptive response by state-dependent inactivation.
    PNAS. 106(52), 22558–22563.
  mla: Friedlander, Tamar, and Naama Brenner. “Adaptive Response by State-Dependent
    Inactivation.” <i>PNAS</i>, vol. 106, no. 52, National Academy of Sciences, 2009,
    pp. 22558–63, doi:<a href="https://doi.org/10.1073/pnas.0902146106 ">10.1073/pnas.0902146106
    </a>.
  short: T. Friedlander, N. Brenner, PNAS 106 (2009) 22558–22563.
date_created: 2018-12-11T11:54:13Z
date_published: 2009-12-01T00:00:00Z
date_updated: 2021-01-12T06:53:26Z
day: '01'
doi: '10.1073/pnas.0902146106 '
extern: 1
intvolume: '       106'
issue: '52'
main_file_link:
- open_access: '1'
  url: http://www.pnas.org/content/106/52/22558.full.pdf
month: '12'
oa: 1
page: 22558 - 22563
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '5281'
quality_controlled: 0
status: public
title: Adaptive response by state-dependent inactivation
type: journal_article
volume: 106
year: '2009'
...
---
_id: '1971'
abstract:
- lang: eng
  text: Complex I plays a central role in cellular energy production, coupling electron
    transfer between NADH and quinone to proton translocation. The mechanism of this
    highly efficient enzyme is currently unknown. Mitochondrial complex I is a major
    source of reactive oxygen species, which may be one of the causes of aging. Dysfunction
    of complex I is implicated in many human neurodegenerative diseases. We have determined
    several x-ray structures of the oxidized and reduced hydrophilic domain of complex
    I from Thermus thermophilus at up to 3.1 Å resolution. The structures reveal the
    mode of interaction of complex I with NADH, explaining known kinetic data and
    providing implications for the mechanism of reactive oxygen species production
    at the flavin site of complex I. Bound metals were identified in the channel at
    the interface with the frataxin-like subunit Nqo15, indicating possible iron-binding
    sites. Conformational changes upon reduction of the complex involve adjustments
    in the nucleotide-binding pocket, as well as small but significant shifts of several
    α-helices at the interface with the membrane domain. These shifts are likely to
    be driven by the reduction of nearby iron-sulfur clusters N2 and N6a/b. Cluster
    N2 is the electron donor to quinone and is coordinated by unique motif involving
    two consecutive (tandem) cysteines. An unprecedented &quot;on/off switch&quot;
    (disconnection) of coordinating bonds between the tandem cysteines and this cluster
    was observed upon reduction. Comparison of the structures suggests a novel mechanism
    of coupling between electron transfer and proton translocation, combining conformational
    changes and protonation/deprotonation of tandem cysteines.
acknowledgement: 'This work was supported by the Medical Research Council. '
author:
- first_name: John
  full_name: Berrisford, John M
  last_name: Berrisford
- first_name: Leonid A
  full_name: Leonid Sazanov
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: Berrisford J, Sazanov LA. Structural basis for the mechanism of respiratory
    complex I. <i>Journal of Biological Chemistry</i>. 2009;284(43):29773-29783. doi:<a
    href="https://doi.org/10.1074/jbc.M109.032144">10.1074/jbc.M109.032144</a>
  apa: Berrisford, J., &#38; Sazanov, L. A. (2009). Structural basis for the mechanism
    of respiratory complex I. <i>Journal of Biological Chemistry</i>. American Society
    for Biochemistry and Molecular Biology. <a href="https://doi.org/10.1074/jbc.M109.032144">https://doi.org/10.1074/jbc.M109.032144</a>
  chicago: Berrisford, John, and Leonid A Sazanov. “Structural Basis for the Mechanism
    of Respiratory Complex I.” <i>Journal of Biological Chemistry</i>. American Society
    for Biochemistry and Molecular Biology, 2009. <a href="https://doi.org/10.1074/jbc.M109.032144">https://doi.org/10.1074/jbc.M109.032144</a>.
  ieee: J. Berrisford and L. A. Sazanov, “Structural basis for the mechanism of respiratory
    complex I,” <i>Journal of Biological Chemistry</i>, vol. 284, no. 43. American
    Society for Biochemistry and Molecular Biology, pp. 29773–29783, 2009.
  ista: Berrisford J, Sazanov LA. 2009. Structural basis for the mechanism of respiratory
    complex I. Journal of Biological Chemistry. 284(43), 29773–29783.
  mla: Berrisford, John, and Leonid A. Sazanov. “Structural Basis for the Mechanism
    of Respiratory Complex I.” <i>Journal of Biological Chemistry</i>, vol. 284, no.
    43, American Society for Biochemistry and Molecular Biology, 2009, pp. 29773–83,
    doi:<a href="https://doi.org/10.1074/jbc.M109.032144">10.1074/jbc.M109.032144</a>.
  short: J. Berrisford, L.A. Sazanov, Journal of Biological Chemistry 284 (2009) 29773–29783.
date_created: 2018-12-11T11:54:59Z
date_published: 2009-10-23T00:00:00Z
date_updated: 2021-01-12T06:54:26Z
day: '23'
doi: 10.1074/jbc.M109.032144
extern: 1
intvolume: '       284'
issue: '43'
month: '10'
page: 29773 - 29783
publication: Journal of Biological Chemistry
publication_status: published
publisher: American Society for Biochemistry and Molecular Biology
publist_id: '5114'
quality_controlled: 0
status: public
title: Structural basis for the mechanism of respiratory complex I
type: journal_article
volume: 284
year: '2009'
...
---
_id: '1983'
abstract:
- lang: eng
  text: 'During many cellular processes such as cell division, polarization and motility,
    the plasma membrane does not only represent a passive physical barrier, but also
    provides a highly dynamic platform for the interplay between lipids, membrane
    binding proteins and cytoskeletal elements. Even though many regulators of these
    interactions are known, their mutual interdependence appears to be highly complex
    and difficult to study in a living cell. Over the past few years, in vitro studies
    on membrane-cytoskeleton interactions using biomimetic membranes turned out to
    be extremely helpful to get better mechanistic insight into the dynamics of these
    processes. In this review, we discuss some of the recent developments using in
    vitro assays to dissect the role of the players involved: lipids in the membrane,
    proteins binding to membranes and proteins binding to membrane proteins. We also
    summarize advantages and disadvantages of supported lipid bilayers as model membrane.'
author:
- first_name: Martin
  full_name: Martin Loose
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
- first_name: Petra
  full_name: 'Schwille, Petra '
  last_name: Schwille
citation:
  ama: Loose M, Schwille P. Biomimetic membrane systems to study cellular organization.
    <i>Journal of Structural Biology</i>. 2009;168(1):143-151. doi:<a href="https://doi.org/10.1016/j.jsb.2009.03.016">10.1016/j.jsb.2009.03.016</a>
  apa: Loose, M., &#38; Schwille, P. (2009). Biomimetic membrane systems to study
    cellular organization. <i>Journal of Structural Biology</i>. Academic Press. <a
    href="https://doi.org/10.1016/j.jsb.2009.03.016">https://doi.org/10.1016/j.jsb.2009.03.016</a>
  chicago: Loose, Martin, and Petra Schwille. “Biomimetic Membrane Systems to Study
    Cellular Organization.” <i>Journal of Structural Biology</i>. Academic Press,
    2009. <a href="https://doi.org/10.1016/j.jsb.2009.03.016">https://doi.org/10.1016/j.jsb.2009.03.016</a>.
  ieee: M. Loose and P. Schwille, “Biomimetic membrane systems to study cellular organization,”
    <i>Journal of Structural Biology</i>, vol. 168, no. 1. Academic Press, pp. 143–151,
    2009.
  ista: Loose M, Schwille P. 2009. Biomimetic membrane systems to study cellular organization.
    Journal of Structural Biology. 168(1), 143–151.
  mla: Loose, Martin, and Petra Schwille. “Biomimetic Membrane Systems to Study Cellular
    Organization.” <i>Journal of Structural Biology</i>, vol. 168, no. 1, Academic
    Press, 2009, pp. 143–51, doi:<a href="https://doi.org/10.1016/j.jsb.2009.03.016">10.1016/j.jsb.2009.03.016</a>.
  short: M. Loose, P. Schwille, Journal of Structural Biology 168 (2009) 143–151.
date_created: 2018-12-11T11:55:03Z
date_published: 2009-10-01T00:00:00Z
date_updated: 2021-01-12T06:54:30Z
day: '01'
doi: 10.1016/j.jsb.2009.03.016
extern: 1
intvolume: '       168'
issue: '1'
month: '10'
page: 143 - 151
publication: Journal of Structural Biology
publication_status: published
publisher: Academic Press
publist_id: '5099'
quality_controlled: 0
status: public
title: Biomimetic membrane systems to study cellular organization
type: journal_article
volume: 168
year: '2009'
...
---
_id: '1984'
abstract:
- lang: eng
  text: In animal and plant cells, mitotic chromatin locally generates microtubules
    that self-organize into a mitotic spindle, and its dimensions and bipolar symmetry
    are essential for accurate chromosome segregation. By immobilizing microscopic
    chromatin-coated beads on slide surfaces using a microprinting technique, we have
    examined the effect of chromatin on the dimensions and symmetry of spindles in
    Xenopus laevis cytoplasmic extracts. While circular spots with diameters around
    14-18 μm trigger bipolar spindle formation, larger spots generate an incorrect
    number of poles. We also examined lines of chromatin with various dimensions.
    Their length determined the number of poles that formed, with a 6 × 18 μm rectangular
    patch generating normal spindle morphology. Around longer lines, multiple poles
    formed and the structures were disorganized. While lines thinner than 10 μm generated
    symmetric structures, thicker lines induced the formation of asymmetric structures
    where all microtubules are on the same side of the line. Our results show that
    chromatin defines spindle shape and orientation. For a video summary of this article,
    see the PaperFlick file available with the online Supplemental Data.
acknowledgement: This work was supported by EU contract LSHG-CT-2004-503568 ComBio,
  the Spanish ministry of education (M.M.C.), and EU-STREP active BioMics (A.D.).
  Research in the Nedelec lab is funded by the Center for Modeling and Simulation
  in the Biosciences (http://www.bioms.de), the Volkswagenstiftung, and Human Frontier
  Science Program grant RGY84.
author:
- first_name: Ana
  full_name: Dinarina, Ana
  last_name: Dinarina
- first_name: Céline
  full_name: Pugieux, Céline
  last_name: Pugieux
- first_name: Maria
  full_name: Corral, Maria M
  last_name: Corral
- first_name: Martin
  full_name: Martin Loose
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
- first_name: Joachim
  full_name: Spatz, Joachim P
  last_name: Spatz
- first_name: Éric
  full_name: Karsenti, Éric
  last_name: Karsenti
- first_name: François
  full_name: Nédélec, François J
  last_name: Nédélec
citation:
  ama: Dinarina A, Pugieux C, Corral M, et al. Chromatin shapes the mitotic spindle.
    <i>Cell</i>. 2009;138(3):502-513. doi:<a href="https://doi.org/10.1016/j.cell.2009.05.027">10.1016/j.cell.2009.05.027</a>
  apa: Dinarina, A., Pugieux, C., Corral, M., Loose, M., Spatz, J., Karsenti, É.,
    &#38; Nédélec, F. (2009). Chromatin shapes the mitotic spindle. <i>Cell</i>. Cell
    Press. <a href="https://doi.org/10.1016/j.cell.2009.05.027">https://doi.org/10.1016/j.cell.2009.05.027</a>
  chicago: Dinarina, Ana, Céline Pugieux, Maria Corral, Martin Loose, Joachim Spatz,
    Éric Karsenti, and François Nédélec. “Chromatin Shapes the Mitotic Spindle.” <i>Cell</i>.
    Cell Press, 2009. <a href="https://doi.org/10.1016/j.cell.2009.05.027">https://doi.org/10.1016/j.cell.2009.05.027</a>.
  ieee: A. Dinarina <i>et al.</i>, “Chromatin shapes the mitotic spindle,” <i>Cell</i>,
    vol. 138, no. 3. Cell Press, pp. 502–513, 2009.
  ista: Dinarina A, Pugieux C, Corral M, Loose M, Spatz J, Karsenti É, Nédélec F.
    2009. Chromatin shapes the mitotic spindle. Cell. 138(3), 502–513.
  mla: Dinarina, Ana, et al. “Chromatin Shapes the Mitotic Spindle.” <i>Cell</i>,
    vol. 138, no. 3, Cell Press, 2009, pp. 502–13, doi:<a href="https://doi.org/10.1016/j.cell.2009.05.027">10.1016/j.cell.2009.05.027</a>.
  short: A. Dinarina, C. Pugieux, M. Corral, M. Loose, J. Spatz, É. Karsenti, F. Nédélec,
    Cell 138 (2009) 502–513.
date_created: 2018-12-11T11:55:03Z
date_published: 2009-08-07T00:00:00Z
date_updated: 2021-01-12T06:54:30Z
day: '07'
doi: 10.1016/j.cell.2009.05.027
extern: 1
intvolume: '       138'
issue: '3'
month: '08'
page: 502 - 513
publication: Cell
publication_status: published
publisher: Cell Press
publist_id: '5100'
quality_controlled: 0
status: public
title: Chromatin shapes the mitotic spindle
type: journal_article
volume: 138
year: '2009'
...
---
_id: '2067'
acknowledgement: This work was funded by a Portuguese Foundation for Science and Technology
  scholarship to B.V., and B.C. was supported by the Royal Society
author:
- first_name: Beatriz
  full_name: Beatriz Vicoso
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Brian
  full_name: Charlesworth, Brian
  last_name: Charlesworth
citation:
  ama: Vicoso B, Charlesworth B. Recombination rates may affect the ratio of X to
    autosomal noncoding polymorphism in African populations of Drosophila melanogaster.
    <i>Genetics</i>. 2009;181(4):1699-1701. doi:<a href="https://doi.org/10.1534/genetics.108.098004">10.1534/genetics.108.098004</a>
  apa: Vicoso, B., &#38; Charlesworth, B. (2009). Recombination rates may affect the
    ratio of X to autosomal noncoding polymorphism in African populations of Drosophila
    melanogaster. <i>Genetics</i>. Genetics Society of America. <a href="https://doi.org/10.1534/genetics.108.098004">https://doi.org/10.1534/genetics.108.098004</a>
  chicago: Vicoso, Beatriz, and Brian Charlesworth. “Recombination Rates May Affect
    the Ratio of X to Autosomal Noncoding Polymorphism in African Populations of Drosophila
    Melanogaster.” <i>Genetics</i>. Genetics Society of America, 2009. <a href="https://doi.org/10.1534/genetics.108.098004">https://doi.org/10.1534/genetics.108.098004</a>.
  ieee: B. Vicoso and B. Charlesworth, “Recombination rates may affect the ratio of
    X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster,”
    <i>Genetics</i>, vol. 181, no. 4. Genetics Society of America, pp. 1699–1701,
    2009.
  ista: Vicoso B, Charlesworth B. 2009. Recombination rates may affect the ratio of
    X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster.
    Genetics. 181(4), 1699–1701.
  mla: Vicoso, Beatriz, and Brian Charlesworth. “Recombination Rates May Affect the
    Ratio of X to Autosomal Noncoding Polymorphism in African Populations of Drosophila
    Melanogaster.” <i>Genetics</i>, vol. 181, no. 4, Genetics Society of America,
    2009, pp. 1699–701, doi:<a href="https://doi.org/10.1534/genetics.108.098004">10.1534/genetics.108.098004</a>.
  short: B. Vicoso, B. Charlesworth, Genetics 181 (2009) 1699–1701.
date_created: 2018-12-11T11:55:31Z
date_published: 2009-04-01T00:00:00Z
date_updated: 2021-01-12T06:55:06Z
day: '01'
doi: 10.1534/genetics.108.098004
extern: 1
intvolume: '       181'
issue: '4'
month: '04'
page: 1699 - 1701
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '4971'
quality_controlled: 0
status: public
title: Recombination rates may affect the ratio of X to autosomal noncoding polymorphism
  in African populations of Drosophila melanogaster
type: journal_article
volume: 181
year: '2009'
...
---
_id: '2068'
abstract:
- lang: eng
  text: In Drosophila, there is a consistent deficit of male-biased genes on the X
    chromosome. It has been suggested that male-biased genes may evolve from initially
    unbiased genes as a result of increased expression levels in males. If transcription
    rates are limited, a large increase in expression in the testis may be harder
    to achieve for single-copy X-linked genes than for autosomal genes, because they
    are already hypertranscribed due to dosage compensation. This hypothesis predicts
    that the larger the increase in expression required to make a male-biased gene,
    the lower the chance of this being achievable if it is located on the X chromosome.
    Consequently, highly expressed male-biased genes should be located on the X chromosome
    less often than lowly expressed male-biased genes. This pattern is observed in
    our analysis of publicly available data, where microarray data or EST data are
    used to detect male-biased genes in D. melanogaster and to measure their expression
    levels. This is consistent with the idea that limitations in transcription rates
    may prevent male-biased genes from accumulating on the X chromosome.
acknowledgement: This work was funded by a Portuguese Foundation for Science and Technology
  scholarship to B.V., and B.C. was supported by the Royal Society
author:
- first_name: Beatriz
  full_name: Beatriz Vicoso
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Brian
  full_name: Charlesworth, Brian
  last_name: Charlesworth
citation:
  ama: 'Vicoso B, Charlesworth B. The deficit of male-biased genes on the D. melanogaster
    X chromosome is expression-dependent: A consequence of dosage compensation? <i>Journal
    of Molecular Evolution</i>. 2009;68(5):576-583. doi:<a href="https://doi.org/10.1007/s00239-009-9235-4">10.1007/s00239-009-9235-4</a>'
  apa: 'Vicoso, B., &#38; Charlesworth, B. (2009). The deficit of male-biased genes
    on the D. melanogaster X chromosome is expression-dependent: A consequence of
    dosage compensation? <i>Journal of Molecular Evolution</i>. Springer. <a href="https://doi.org/10.1007/s00239-009-9235-4">https://doi.org/10.1007/s00239-009-9235-4</a>'
  chicago: 'Vicoso, Beatriz, and Brian Charlesworth. “The Deficit of Male-Biased Genes
    on the D. Melanogaster X Chromosome Is Expression-Dependent: A Consequence of
    Dosage Compensation?” <i>Journal of Molecular Evolution</i>. Springer, 2009. <a
    href="https://doi.org/10.1007/s00239-009-9235-4">https://doi.org/10.1007/s00239-009-9235-4</a>.'
  ieee: 'B. Vicoso and B. Charlesworth, “The deficit of male-biased genes on the D.
    melanogaster X chromosome is expression-dependent: A consequence of dosage compensation?,”
    <i>Journal of Molecular Evolution</i>, vol. 68, no. 5. Springer, pp. 576–583,
    2009.'
  ista: 'Vicoso B, Charlesworth B. 2009. The deficit of male-biased genes on the D.
    melanogaster X chromosome is expression-dependent: A consequence of dosage compensation?
    Journal of Molecular Evolution. 68(5), 576–583.'
  mla: 'Vicoso, Beatriz, and Brian Charlesworth. “The Deficit of Male-Biased Genes
    on the D. Melanogaster X Chromosome Is Expression-Dependent: A Consequence of
    Dosage Compensation?” <i>Journal of Molecular Evolution</i>, vol. 68, no. 5, Springer,
    2009, pp. 576–83, doi:<a href="https://doi.org/10.1007/s00239-009-9235-4">10.1007/s00239-009-9235-4</a>.'
  short: B. Vicoso, B. Charlesworth, Journal of Molecular Evolution 68 (2009) 576–583.
date_created: 2018-12-11T11:55:31Z
date_published: 2009-05-01T00:00:00Z
date_updated: 2021-01-12T06:55:06Z
day: '01'
doi: 10.1007/s00239-009-9235-4
extern: 1
intvolume: '        68'
issue: '5'
month: '05'
page: 576 - 583
publication: Journal of Molecular Evolution
publication_status: published
publisher: Springer
publist_id: '4970'
quality_controlled: 0
status: public
title: 'The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent:
  A consequence of dosage compensation?'
type: journal_article
volume: 68
year: '2009'
...
---
_id: '2069'
abstract:
- lang: eng
  text: Current models of X-linked and autosomal evolutionary rates often assume that
    the effective population size of the X chromosome (NeX) is equal to three-quarters
    of the autosomal population size (NeA). However, polymorphism studies of Drosophila
    melanogaster and D. simulans suggest that there are often significant deviations
    from this value. We have computed fixation rates of beneficial and deleterious
    mutations at X-linked and autosomal sites when this occurs. We find that NeX/NeA
    is a crucial parameter for the rates of evolution of X-linked sites compared to
    autosomal sites. Faster-X evolution due to the fixation of beneficial mutations
    can occur under a much wider range of levels of dominance when NeX/N eA &gt; 3/4.
    We also examined various parameters that are known to influence the rates of evolution
    at X-linked and autosomal sites, such as different mutation rates in males and
    females and mutations that are sexually antagonistic, to determine which cases
    can lead to faster-X evolution. We show that, when the rate of nonsynonymous evolution
    is normalized by the rate of neutral evolution, a sex difference in mutation rate
    has no influence on the conditions for faster-X evolution.
acknowledgement: This work was funded by a Portuguese Foundation for Science and Technology
  scholarship to BV, and BC was supported by the Royal Society
author:
- first_name: Beatriz
  full_name: Beatriz Vicoso
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Brian
  full_name: Charlesworth, Brian
  last_name: Charlesworth
citation:
  ama: 'Vicoso B, Charlesworth B. Effective population size and the faster-X effect:
    An extended model. <i>Evolution</i>. 2009;63(9):2413-2426. doi:<a href="https://doi.org/10.1111/j.1558-5646.2009.00719.x">10.1111/j.1558-5646.2009.00719.x</a>'
  apa: 'Vicoso, B., &#38; Charlesworth, B. (2009). Effective population size and the
    faster-X effect: An extended model. <i>Evolution</i>. Wiley-Blackwell. <a href="https://doi.org/10.1111/j.1558-5646.2009.00719.x">https://doi.org/10.1111/j.1558-5646.2009.00719.x</a>'
  chicago: 'Vicoso, Beatriz, and Brian Charlesworth. “Effective Population Size and
    the Faster-X Effect: An Extended Model.” <i>Evolution</i>. Wiley-Blackwell, 2009.
    <a href="https://doi.org/10.1111/j.1558-5646.2009.00719.x">https://doi.org/10.1111/j.1558-5646.2009.00719.x</a>.'
  ieee: 'B. Vicoso and B. Charlesworth, “Effective population size and the faster-X
    effect: An extended model,” <i>Evolution</i>, vol. 63, no. 9. Wiley-Blackwell,
    pp. 2413–2426, 2009.'
  ista: 'Vicoso B, Charlesworth B. 2009. Effective population size and the faster-X
    effect: An extended model. Evolution. 63(9), 2413–2426.'
  mla: 'Vicoso, Beatriz, and Brian Charlesworth. “Effective Population Size and the
    Faster-X Effect: An Extended Model.” <i>Evolution</i>, vol. 63, no. 9, Wiley-Blackwell,
    2009, pp. 2413–26, doi:<a href="https://doi.org/10.1111/j.1558-5646.2009.00719.x">10.1111/j.1558-5646.2009.00719.x</a>.'
  short: B. Vicoso, B. Charlesworth, Evolution 63 (2009) 2413–2426.
date_created: 2018-12-11T11:55:32Z
date_published: 2009-09-01T00:00:00Z
date_updated: 2021-01-12T06:55:06Z
day: '01'
doi: 10.1111/j.1558-5646.2009.00719.x
extern: 1
intvolume: '        63'
issue: '9'
month: '09'
page: 2413 - 2426
publication: Evolution
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4968'
quality_controlled: 0
status: public
title: 'Effective population size and the faster-X effect: An extended model'
type: journal_article
volume: 63
year: '2009'
...
---
_id: '2070'
abstract:
- lang: eng
  text: In many eukaryotic organisms, gender is determined by a pair of heteromorphic
    sex chromosomes. Degeneration of the non-recombining Y chromosome is a general
    facet of sex chromosome evolution. Selective pressure to restore expression levels
    of X-linked genes relative to autosomes accompanies Y-chromosome degeneration,
    thus driving the evolution of dosage compensation mechanisms. This review focuses
    on evolutionary aspects of dosage compensation, in light of recent advances in
    comparative and functional genomics that have substantially increased our understanding
    of the molecular mechanisms of dosage compensation and how it evolved. We review
    processes involved in sex chromosome evolution, and discuss the dynamic interaction
    between Y degeneration and the acquisition of dosage compensation. We compare
    mechanisms of dosage compensation and the origin of dosage compensation genes
    between different taxa and comment on sex chromosomes that apparently lack compensation
    mechanisms. Finally, we discuss how dosage compensation systems can also influence
    the evolution of well-established sex chromosomes.
acknowledgement: This research is funded by NIH Grant GM076007 and a Sloan Research
  Fellowship and a David and Lucile Packard Fellowship to D.B.
author:
- first_name: Beatriz
  full_name: Beatriz Vicoso
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Doris
  full_name: Bachtrog, Doris
  last_name: Bachtrog
citation:
  ama: Vicoso B, Bachtrog D. Progress and prospects toward our understanding of the
    evolution of dosage compensation. <i>Chromosome Research</i>. 2009;17(5):585-602.
    doi:<a href="https://doi.org/10.1007/s10577-009-9053-y">10.1007/s10577-009-9053-y</a>
  apa: Vicoso, B., &#38; Bachtrog, D. (2009). Progress and prospects toward our understanding
    of the evolution of dosage compensation. <i>Chromosome Research</i>. Springer.
    <a href="https://doi.org/10.1007/s10577-009-9053-y">https://doi.org/10.1007/s10577-009-9053-y</a>
  chicago: Vicoso, Beatriz, and Doris Bachtrog. “Progress and Prospects toward Our
    Understanding of the Evolution of Dosage Compensation.” <i>Chromosome Research</i>.
    Springer, 2009. <a href="https://doi.org/10.1007/s10577-009-9053-y">https://doi.org/10.1007/s10577-009-9053-y</a>.
  ieee: B. Vicoso and D. Bachtrog, “Progress and prospects toward our understanding
    of the evolution of dosage compensation,” <i>Chromosome Research</i>, vol. 17,
    no. 5. Springer, pp. 585–602, 2009.
  ista: Vicoso B, Bachtrog D. 2009. Progress and prospects toward our understanding
    of the evolution of dosage compensation. Chromosome Research. 17(5), 585–602.
  mla: Vicoso, Beatriz, and Doris Bachtrog. “Progress and Prospects toward Our Understanding
    of the Evolution of Dosage Compensation.” <i>Chromosome Research</i>, vol. 17,
    no. 5, Springer, 2009, pp. 585–602, doi:<a href="https://doi.org/10.1007/s10577-009-9053-y">10.1007/s10577-009-9053-y</a>.
  short: B. Vicoso, D. Bachtrog, Chromosome Research 17 (2009) 585–602.
date_created: 2018-12-11T11:55:32Z
date_published: 2009-07-01T00:00:00Z
date_updated: 2021-01-12T06:55:07Z
day: '01'
doi: 10.1007/s10577-009-9053-y
extern: 1
intvolume: '        17'
issue: '5'
month: '07'
page: 585 - 602
publication: Chromosome Research
publication_status: published
publisher: Springer
publist_id: '4969'
quality_controlled: 0
status: public
title: Progress and prospects toward our understanding of the evolution of dosage
  compensation
type: journal_article
volume: 17
year: '2009'
...
---
_id: '2094'
abstract:
- lang: eng
  text: 'This paper introduces a data-driven representation and modeling technique
    for simulating non-linear heterogeneous soft tissue. It simplifies the construction
    of convincing deformable models by avoiding complex selection and tuning of physical
    material parameters, yet retaining the richness of non-linear heterogeneous behavior.
    We acquire a set of example deformations of a real object, and represent each
    of them as a spatially varying stress-strain relationship in a finite-element
    model. We then model the material by non-linear interpolation of these stress-strain
    relationships in strain-space. Our method relies on a simple-to-build capture
    system and an efficient run-time simulation algorithm based on incremental loading,
    making it suitable for interactive computer graphics applications. We present
    the results of our approach for several non-linear materials and biological soft
    tissue, with accurate agreement of our model to the measured data. '
acknowledgement: 'This research was supported by the NCCR Co-Me grant of the Swiss
  National Science Foundation. Moritz Bacher was partially supported by the Initiative
  in Innovative Computing (IIC) and the School of Engineering and Applied Sciences
  (SEAS) at Harvard. '
author:
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Moritz
  full_name: Bac̈her, Moritz
  last_name: Bac̈Her
- first_name: Miguel
  full_name: Otaduy, Miguel A
  last_name: Otaduy
- first_name: Wojciech
  full_name: Matusik, Wojciech
  last_name: Matusik
- first_name: Hanspeter
  full_name: Pfister, Hanspeter
  last_name: Pfister
- first_name: Markus
  full_name: Groß, Markus S
  last_name: Groß
citation:
  ama: 'Bickel B, Bac̈Her M, Otaduy M, Matusik W, Pfister H, Groß M. Capture and modeling
    of non-linear heterogeneous soft tissue. In: Vol 28. ACM; 2009. doi:<a href="https://doi.org/10.1145/1576246.1531395
    ">10.1145/1576246.1531395 </a>'
  apa: Bickel, B., Bac̈Her, M., Otaduy, M., Matusik, W., Pfister, H., &#38; Groß,
    M. (2009). Capture and modeling of non-linear heterogeneous soft tissue (Vol.
    28). Presented at the ACM SIGGRAPH, ACM. <a href="https://doi.org/10.1145/1576246.1531395
    ">https://doi.org/10.1145/1576246.1531395 </a>
  chicago: Bickel, Bernd, Moritz Bac̈Her, Miguel Otaduy, Wojciech Matusik, Hanspeter
    Pfister, and Markus Groß. “Capture and Modeling of Non-Linear Heterogeneous Soft
    Tissue,” Vol. 28. ACM, 2009. <a href="https://doi.org/10.1145/1576246.1531395
    ">https://doi.org/10.1145/1576246.1531395 </a>.
  ieee: B. Bickel, M. Bac̈Her, M. Otaduy, W. Matusik, H. Pfister, and M. Groß, “Capture
    and modeling of non-linear heterogeneous soft tissue,” presented at the ACM SIGGRAPH,
    2009, vol. 28, no. 3.
  ista: Bickel B, Bac̈Her M, Otaduy M, Matusik W, Pfister H, Groß M. 2009. Capture
    and modeling of non-linear heterogeneous soft tissue. ACM SIGGRAPH vol. 28.
  mla: Bickel, Bernd, et al. <i>Capture and Modeling of Non-Linear Heterogeneous Soft
    Tissue</i>. Vol. 28, no. 3, ACM, 2009, doi:<a href="https://doi.org/10.1145/1576246.1531395
    ">10.1145/1576246.1531395 </a>.
  short: B. Bickel, M. Bac̈Her, M. Otaduy, W. Matusik, H. Pfister, M. Groß, in:, ACM,
    2009.
conference:
  name: ACM SIGGRAPH
date_created: 2018-12-11T11:55:40Z
date_published: 2009-07-27T00:00:00Z
date_updated: 2019-04-26T07:22:08Z
day: '27'
doi: '10.1145/1576246.1531395 '
extern: 1
intvolume: '        28'
issue: '3'
month: '07'
publication_status: published
publisher: ACM
publist_id: '4940'
quality_controlled: 0
status: public
title: Capture and modeling of non-linear heterogeneous soft tissue
type: conference
volume: 28
year: '2009'
...
---
_id: '2119'
abstract:
- lang: eng
  text: 'Let (E, H, μ) be an abstract Wiener space and let DV : = V D, where D denotes
    the Malliavin derivative and V is a closed and densely defined operator from H
    into another Hilbert space under(H, {combining low line}). Given a bounded operator
    B on under(H, {combining low line}), coercive on the range over(R (V), -), we
    consider the operators A : = V* B V in H and under(A, {combining low line}) :
    = V V* B in under(H, {combining low line}), as well as the realisations of the
    operators L : = DV* B DV and under(L, {combining low line}) : = DV DV* B in Lp
    (E, μ) and Lp (E, μ ; under(H, {combining low line})) respectively, where 1 &lt;
    p &lt; ∞. Our main result asserts that the following four assertions are equivalent:
    (1)D (sqrt(L)) = D (DV) with {norm of matrix} sqrt(L) f {norm of matrix}p {minus
    tilde} {norm of matrix} DV f {norm of matrix}p for f ∈ D (sqrt(L));(2)under(L,
    {combining low line}) admits a bounded H∞-functional calculus on over(R (DV),
    -);(3)D (sqrt(A)) = D (V) with {norm of matrix} sqrt(A) h {norm of matrix} {minus
    tilde} {norm of matrix} V h {norm of matrix} for h ∈ D (sqrt(A));(4)under(A, {combining
    low line}) admits a bounded H∞-functional calculus on over(R (V), -). Moreover,
    if these conditions are satisfied, then D (L) = D (DV2) ∩ D (DA). The equivalence
    (1)-(4) is a non-symmetric generalisation of the classical Meyer inequalities
    of Malliavin calculus (where under(H, {combining low line}) = H, V = I, B = frac(1,
    2) I). A one-sided version of (1)-(4), giving Lp-boundedness of the Riesz transform
    DV / sqrt(L) in terms of a square function estimate, is also obtained. As an application
    let -A generate an analytic C0-contraction semigroup on a Hilbert space H and
    let -L be the Lp-realisation of the generator of its second quantisation. Our
    results imply that two-sided bounds for the Riesz transform of L are equivalent
    with the Kato square root property for A. The boundedness of the Riesz transform
    is used to obtain an Lp-domain characterisation for the operator L.'
author:
- first_name: Jan
  full_name: Jan Maas
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
- first_name: Jan
  full_name: van Neerven, Jan M
  last_name: Van Neerven
citation:
  ama: Maas J, Van Neerven J. Boundedness of Riesz transforms for elliptic operators
    on abstract Wiener spaces. <i>Journal of Functional Analysis</i>. 2009;257(8):2410-2475.
    doi:<a href="https://doi.org/10.1016/j.jfa.2009.07.001">10.1016/j.jfa.2009.07.001</a>
  apa: Maas, J., &#38; Van Neerven, J. (2009). Boundedness of Riesz transforms for
    elliptic operators on abstract Wiener spaces. <i>Journal of Functional Analysis</i>.
    Academic Press. <a href="https://doi.org/10.1016/j.jfa.2009.07.001">https://doi.org/10.1016/j.jfa.2009.07.001</a>
  chicago: Maas, Jan, and Jan Van Neerven. “Boundedness of Riesz Transforms for Elliptic
    Operators on Abstract Wiener Spaces.” <i>Journal of Functional Analysis</i>. Academic
    Press, 2009. <a href="https://doi.org/10.1016/j.jfa.2009.07.001">https://doi.org/10.1016/j.jfa.2009.07.001</a>.
  ieee: J. Maas and J. Van Neerven, “Boundedness of Riesz transforms for elliptic
    operators on abstract Wiener spaces,” <i>Journal of Functional Analysis</i>, vol.
    257, no. 8. Academic Press, pp. 2410–2475, 2009.
  ista: Maas J, Van Neerven J. 2009. Boundedness of Riesz transforms for elliptic
    operators on abstract Wiener spaces. Journal of Functional Analysis. 257(8), 2410–2475.
  mla: Maas, Jan, and Jan Van Neerven. “Boundedness of Riesz Transforms for Elliptic
    Operators on Abstract Wiener Spaces.” <i>Journal of Functional Analysis</i>, vol.
    257, no. 8, Academic Press, 2009, pp. 2410–75, doi:<a href="https://doi.org/10.1016/j.jfa.2009.07.001">10.1016/j.jfa.2009.07.001</a>.
  short: J. Maas, J. Van Neerven, Journal of Functional Analysis 257 (2009) 2410–2475.
date_created: 2018-12-11T11:55:49Z
date_published: 2009-10-15T00:00:00Z
date_updated: 2021-01-12T06:55:25Z
day: '15'
doi: 10.1016/j.jfa.2009.07.001
extern: 1
intvolume: '       257'
issue: '8'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0804.1432
month: '10'
oa: 1
page: 2410 - 2475
publication: Journal of Functional Analysis
publication_status: published
publisher: Academic Press
publist_id: '4913'
quality_controlled: 0
status: public
title: Boundedness of Riesz transforms for elliptic operators on abstract Wiener spaces
type: journal_article
volume: 257
year: '2009'
...
---
_id: '2136'
abstract:
- lang: eng
  text: The local atomic structure of PbTiO3, BaTiO3, and KNbO3 perovskite-type crystals
    and K x Na1 − x NbO3 solid solutions in different phases is investigated using
    the angular dependence of the pre-edge structure of the Ti and Nb K X-ray absorption
    spectra and the EXAFS data. In noncubic phases, a considerable deviation of the
    local structure from the structure determined from diffraction data is observed
    only for the tetragonal phase of the BaTiO3 crystal. It is revealed that, in the
    cubic phase of niobates, the niobium atoms are characterized by significant displacements
    from the centrosymmetric positions along the threefold axes, so that they are
    close in the magnitude and the direction to the displacements in the low-temperatures
    rhombohedral phases.
acknowledgement: This study was supported by the Russian Founda*tion for Basic Research
  (project no. 07*02*00796a).
author:
- first_name: Rostislav
  full_name: Vedrinskiǐ, Rostislav V
  last_name: Vedrinskiǐ
- first_name: V.
  full_name: Kraǐzman, V. L
  last_name: Kraǐzman
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Elena
  full_name: Nazarenko, Elena S
  last_name: Nazarenko
- first_name: Alexander
  full_name: Novakovich, Alexander A
  last_name: Novakovich
- first_name: Larisa
  full_name: Reznichenko, Larisa A
  last_name: Reznichenko
- first_name: Vladimir
  full_name: Fokin, Vladimir N
  last_name: Fokin
- first_name: Victoria
  full_name: Shuvaeva, Victoria A
  last_name: Shuvaeva
citation:
  ama: 'Vedrinskiǐ R, Kraǐzman V, Lemeshko M, et al. Local atomic structure of niobates
    and titanates from X-ray absorption spectroscopic data. In: Vol 51. Springer;
    2009:1394-1398. doi:<a href="https://doi.org/10.1134/S106378340907018X">10.1134/S106378340907018X</a>'
  apa: 'Vedrinskiǐ, R., Kraǐzman, V., Lemeshko, M., Nazarenko, E., Novakovich, A.,
    Reznichenko, L., … Shuvaeva, V. (2009). Local atomic structure of niobates and
    titanates from X-ray absorption spectroscopic data (Vol. 51, pp. 1394–1398). Presented
    at the CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII),
    Springer. <a href="https://doi.org/10.1134/S106378340907018X">https://doi.org/10.1134/S106378340907018X</a>'
  chicago: Vedrinskiǐ, Rostislav, V. Kraǐzman, Mikhail Lemeshko, Elena Nazarenko,
    Alexander Novakovich, Larisa Reznichenko, Vladimir Fokin, and Victoria Shuvaeva.
    “Local Atomic Structure of Niobates and Titanates from X-Ray Absorption Spectroscopic
    Data,” 51:1394–98. Springer, 2009. <a href="https://doi.org/10.1134/S106378340907018X">https://doi.org/10.1134/S106378340907018X</a>.
  ieee: 'R. Vedrinskiǐ <i>et al.</i>, “Local atomic structure of niobates and titanates
    from X-ray absorption spectroscopic data,” presented at the CoPoF: 18th All-Russia
    Conference on Physics of Ferroelectrics (VKS-XVIII), 2009, vol. 51, no. 7, pp.
    1394–1398.'
  ista: 'Vedrinskiǐ R, Kraǐzman V, Lemeshko M, Nazarenko E, Novakovich A, Reznichenko
    L, Fokin V, Shuvaeva V. 2009. Local atomic structure of niobates and titanates
    from X-ray absorption spectroscopic data. CoPoF: 18th All-Russia Conference on
    Physics of Ferroelectrics (VKS-XVIII) vol. 51, 1394–1398.'
  mla: Vedrinskiǐ, Rostislav, et al. <i>Local Atomic Structure of Niobates and Titanates
    from X-Ray Absorption Spectroscopic Data</i>. Vol. 51, no. 7, Springer, 2009,
    pp. 1394–98, doi:<a href="https://doi.org/10.1134/S106378340907018X">10.1134/S106378340907018X</a>.
  short: R. Vedrinskiǐ, V. Kraǐzman, M. Lemeshko, E. Nazarenko, A. Novakovich, L.
    Reznichenko, V. Fokin, V. Shuvaeva, in:, Springer, 2009, pp. 1394–1398.
conference:
  name: 'CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII)'
date_created: 2018-12-11T11:55:55Z
date_published: 2009-07-12T00:00:00Z
date_updated: 2021-01-12T06:55:31Z
day: '12'
doi: 10.1134/S106378340907018X
extern: 1
intvolume: '        51'
issue: '7'
month: '07'
page: 1394 - 1398
publication_status: published
publisher: Springer
publist_id: '4898'
quality_controlled: 0
status: public
title: Local atomic structure of niobates and titanates from X-ray absorption spectroscopic
  data
type: conference
volume: 51
year: '2009'
...
---
_id: '2137'
abstract:
- lang: eng
  text: Relying on the quantization rule of Raab and Friedrich [Phys. Rev. A (2009)
    in press], we derive simple and accurate formulae for the number of rotational
    states supported by a weakly bound vibrational level of a diatomic molecular ion.
    We also provide analytic estimates of the rotational constants of any such levels
    up to threshold for dissociation and obtain a criterion for determining whether
    a given weakly bound vibrational level is rotationless. The results depend solely
    on the long-range part of the molecular potential.
author:
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Bretislav
  full_name: Frierich, Bretislav
  last_name: Frierich
citation:
  ama: Lemeshko M, Frierich B. Rotational structure of weakly bound molecular ions.
    <i>Journal of Atomic and Molecular Sciences</i>. 2009;1(1):41-47. doi:<a href="https://doi.org/10.4208/jams.101009.110209a">10.4208/jams.101009.110209a</a>
  apa: Lemeshko, M., &#38; Frierich, B. (2009). Rotational structure of weakly bound
    molecular ions. <i>Journal of Atomic and Molecular Sciences</i>. Global Science
    Press. <a href="https://doi.org/10.4208/jams.101009.110209a">https://doi.org/10.4208/jams.101009.110209a</a>
  chicago: Lemeshko, Mikhail, and Bretislav Frierich. “Rotational Structure of Weakly
    Bound Molecular Ions.” <i>Journal of Atomic and Molecular Sciences</i>. Global
    Science Press, 2009. <a href="https://doi.org/10.4208/jams.101009.110209a">https://doi.org/10.4208/jams.101009.110209a</a>.
  ieee: M. Lemeshko and B. Frierich, “Rotational structure of weakly bound molecular
    ions,” <i>Journal of Atomic and Molecular Sciences</i>, vol. 1, no. 1. Global
    Science Press, pp. 41–47, 2009.
  ista: Lemeshko M, Frierich B. 2009. Rotational structure of weakly bound molecular
    ions. Journal of Atomic and Molecular Sciences. 1(1), 41–47.
  mla: Lemeshko, Mikhail, and Bretislav Frierich. “Rotational Structure of Weakly
    Bound Molecular Ions.” <i>Journal of Atomic and Molecular Sciences</i>, vol. 1,
    no. 1, Global Science Press, 2009, pp. 41–47, doi:<a href="https://doi.org/10.4208/jams.101009.110209a">10.4208/jams.101009.110209a</a>.
  short: M. Lemeshko, B. Frierich, Journal of Atomic and Molecular Sciences 1 (2009)
    41–47.
date_created: 2018-12-11T11:55:55Z
date_published: 2009-10-10T00:00:00Z
date_updated: 2021-01-12T06:55:32Z
day: '10'
doi: 10.4208/jams.101009.110209a
extern: 1
intvolume: '         1'
issue: '1'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0910.5743
month: '10'
oa: 1
page: 41 - 47
publication: Journal of Atomic and Molecular Sciences
publication_status: published
publisher: Global Science Press
publist_id: '4887'
quality_controlled: 0
status: public
title: Rotational structure of weakly bound molecular ions
type: journal_article
volume: 1
year: '2009'
...
