---
_id: '1041'
abstract:
- lang: eng
  text: We demonstrate efficient transfer of ultracold molecules into a deeply bound
    rovibrational level of the singlet ground state potential in the presence of an
    optical lattice. The overall molecule creation efficiency is 25%, and the transfer
    efficiency to the rovibrational level |v = 73, J = 2) is above 80%. We find that
    the molecules in |v = 73, J = 2) are trapped in the optical lattice, and that
    the lifetime in the lattice is limited by optical excitation by the lattice light.
    The molecule trapping time for a lattice depth of 15 atomic recoil energies is
    about 20 ms. We determine the trapping frequency by the lattice phase and amplitude
    modulation technique. It will now be possible to transfer the molecules to the
    rovibrational ground state |v = 0, J = 0) in the presence of the optical lattice.
acknowledgement: We are indebted to R Grimm for generous support and we thank S Knoop,
  N Boloufa, and O Dulieu for valuable discussions. We gratefully acknowledge funding
  by the Austrian Ministry of Science and Research (BMWF) and the Austrian Science
  Fund (FWF) in the form of a START prize grant. RH acknowledges support by the European
  Union in the form of a Marie-Curie International Incoming Fellowship (IIF).
article_processing_charge: No
arxiv: 1
author:
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Mattias
  full_name: Gustavsson, Mattias
  last_name: Gustavsson
- first_name: Russell
  full_name: Hart, Russell
  last_name: Hart
- first_name: Andreas
  full_name: Liem, Andreas
  last_name: Liem
- first_name: Holger
  full_name: Zellmer, Holger
  last_name: Zellmer
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
citation:
  ama: Danzl JG, Mark M, Haller E, et al. Deeply bound ultracold molecules in an optical
    lattice. <i>New Journal of Physics</i>. 2009;11. doi:<a href="https://doi.org/10.1088/1367-2630/11/5/055036">10.1088/1367-2630/11/5/055036</a>
  apa: Danzl, J. G., Mark, M., Haller, E., Gustavsson, M., Hart, R., Liem, A., … Nägerl,
    H. (2009). Deeply bound ultracold molecules in an optical lattice. <i>New Journal
    of Physics</i>. IOP Publishing Ltd. <a href="https://doi.org/10.1088/1367-2630/11/5/055036">https://doi.org/10.1088/1367-2630/11/5/055036</a>
  chicago: Danzl, Johann G, Manfred Mark, Elmar Haller, Mattias Gustavsson, Russell
    Hart, Andreas Liem, Holger Zellmer, and Hanns Nägerl. “Deeply Bound Ultracold
    Molecules in an Optical Lattice.” <i>New Journal of Physics</i>. IOP Publishing
    Ltd., 2009. <a href="https://doi.org/10.1088/1367-2630/11/5/055036">https://doi.org/10.1088/1367-2630/11/5/055036</a>.
  ieee: J. G. Danzl <i>et al.</i>, “Deeply bound ultracold molecules in an optical
    lattice,” <i>New Journal of Physics</i>, vol. 11. IOP Publishing Ltd., 2009.
  ista: Danzl JG, Mark M, Haller E, Gustavsson M, Hart R, Liem A, Zellmer H, Nägerl
    H. 2009. Deeply bound ultracold molecules in an optical lattice. New Journal of
    Physics. 11.
  mla: Danzl, Johann G., et al. “Deeply Bound Ultracold Molecules in an Optical Lattice.”
    <i>New Journal of Physics</i>, vol. 11, IOP Publishing Ltd., 2009, doi:<a href="https://doi.org/10.1088/1367-2630/11/5/055036">10.1088/1367-2630/11/5/055036</a>.
  short: J.G. Danzl, M. Mark, E. Haller, M. Gustavsson, R. Hart, A. Liem, H. Zellmer,
    H. Nägerl, New Journal of Physics 11 (2009).
date_created: 2018-12-11T11:49:50Z
date_published: 2009-03-14T00:00:00Z
date_updated: 2021-01-12T06:47:51Z
day: '14'
doi: 10.1088/1367-2630/11/5/055036
extern: '1'
external_id:
  arxiv:
  - '0812.5070'
intvolume: '        11'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/0812.5070
month: '03'
oa: 1
oa_version: None
publication: New Journal of Physics
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '6349'
status: public
title: Deeply bound ultracold molecules in an optical lattice
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2009'
...
---
_id: '1043'
abstract:
- lang: eng
  text: One possibility for the creation of ultracold, high phase space density quantum
    gases of molecules in the rovibronic ground state relies on first associating
    weakly-bound molecules from quantum-degenerate atomic gases on a Feshbach resonance
    and then transferring the molecules via several steps of coherent two-photon stimulated
    Raman adiabatic passage (STIRAP) into the rovibronic ground state. Here, in ultracold
    samples of Cs2 Feshbach molecules produced out of ultracold samples of Cs atoms,
    we observe several optical transitions to deeply-bound rovibrational levels of
    the excited 0 u+ molecular potentials with high resolution. At least one of these
    transitions, although rather weak, allows efficient STIRAP transfer into the deeply-bound
    vibrational level v = 73&gt; of the singlet X 1Σg+ ground state potential, as
    recently demonstrated (J. G. Danzl, E. Haller, M. Gustavsson, M. J. Mark, R. Hart,
    N. Bouloufa, O. Dulieu, H. Ritsch, and H.-C. Nägerl, Science, 2008, 321, 1062).
    From this level, the rovibrational ground state v = 0, J = 0&gt; can be reached
    with one more transfer step. In total, our results show that coherent ground state
    transfer for Cs2 is possible using a maximum of two successive two-photon STIRAP
    processes or one single four-photon STIRAP process.
acknowledgement: "We are indebted to R. Grimm for generous support and we thank T.
  Bergeman, H.\r\nSalami, J. Hutson, J. Aldegunde, and E. Tiemann for valuable discussions.
  We\r\ngratefully acknowledge funding by the Austrian Ministry of Science and Research\r\n(BMWF)
  and the Austrian Science Fund (FWF) in the form of a START prize grant\r\nand by
  the European Science Foundation (ESF) in the framework of the EuroQUAM collective
  research project QuDipMol. R. H. acknowledges support by\r\nthe European Union in
  form of a Marie Curie International Incoming Fellowship\r\n(IIF)."
article_processing_charge: No
arxiv: 1
author:
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Mattias
  full_name: Gustavsson, Mattias
  last_name: Gustavsson
- first_name: Nadia
  full_name: Bouloufa, Nadia
  last_name: Bouloufa
- first_name: Olivier
  full_name: Dulieu, Olivier
  last_name: Dulieu
- first_name: Helmut
  full_name: Ritsch, Helmut
  last_name: Ritsch
- first_name: Russell
  full_name: Hart, Russell
  last_name: Hart
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
citation:
  ama: Danzl JG, Mark M, Haller E, et al. Precision molecular spectroscopy for ground
    state transfer of molecular quantum gases. <i>Faraday Discussions</i>. 2009;142:283-295.
    doi:<a href="https://doi.org/10.1039/b820542f">10.1039/b820542f</a>
  apa: Danzl, J. G., Mark, M., Haller, E., Gustavsson, M., Bouloufa, N., Dulieu, O.,
    … Nägerl, H. (2009). Precision molecular spectroscopy for ground state transfer
    of molecular quantum gases. <i>Faraday Discussions</i>. Royal Society of Chemistry.
    <a href="https://doi.org/10.1039/b820542f">https://doi.org/10.1039/b820542f</a>
  chicago: Danzl, Johann G, Manfred Mark, Elmar Haller, Mattias Gustavsson, Nadia
    Bouloufa, Olivier Dulieu, Helmut Ritsch, Russell Hart, and Hanns Nägerl. “Precision
    Molecular Spectroscopy for Ground State Transfer of Molecular Quantum Gases.”
    <i>Faraday Discussions</i>. Royal Society of Chemistry, 2009. <a href="https://doi.org/10.1039/b820542f">https://doi.org/10.1039/b820542f</a>.
  ieee: J. G. Danzl <i>et al.</i>, “Precision molecular spectroscopy for ground state
    transfer of molecular quantum gases,” <i>Faraday Discussions</i>, vol. 142. Royal
    Society of Chemistry, pp. 283–295, 2009.
  ista: Danzl JG, Mark M, Haller E, Gustavsson M, Bouloufa N, Dulieu O, Ritsch H,
    Hart R, Nägerl H. 2009. Precision molecular spectroscopy for ground state transfer
    of molecular quantum gases. Faraday Discussions. 142, 283–295.
  mla: Danzl, Johann G., et al. “Precision Molecular Spectroscopy for Ground State
    Transfer of Molecular Quantum Gases.” <i>Faraday Discussions</i>, vol. 142, Royal
    Society of Chemistry, 2009, pp. 283–95, doi:<a href="https://doi.org/10.1039/b820542f">10.1039/b820542f</a>.
  short: J.G. Danzl, M. Mark, E. Haller, M. Gustavsson, N. Bouloufa, O. Dulieu, H.
    Ritsch, R. Hart, H. Nägerl, Faraday Discussions 142 (2009) 283–295.
date_created: 2018-12-11T11:49:51Z
date_published: 2009-01-01T00:00:00Z
date_updated: 2021-01-12T06:47:52Z
day: '01'
doi: 10.1039/b820542f
extern: '1'
external_id:
  arxiv:
  - '0811.2374'
intvolume: '       142'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/0811.2374
month: '01'
oa: 1
oa_version: Preprint
page: 283 - 295
publication: Faraday Discussions
publication_status: published
publisher: Royal Society of Chemistry
publist_id: '6347'
status: public
title: Precision molecular spectroscopy for ground state transfer of molecular quantum
  gases
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 142
year: '2009'
...
---
_id: '9453'
abstract:
- lang: eng
  text: Parent-of-origin-specific (imprinted) gene expression is regulated in Arabidopsis
    thaliana endosperm by cytosine demethylation of the maternal genome mediated by
    the DNA glycosylase DEMETER, but the extent of the methylation changes is not
    known. Here, we show that virtually the entire endosperm genome is demethylated,
    coupled with extensive local non-CG hypermethylation of small interfering RNA–targeted
    sequences. Mutation of DEMETER partially restores endosperm CG methylation to
    levels found in other tissues, indicating that CG demethylation is specific to
    maternal sequences. Endosperm demethylation is accompanied by CHH hypermethylation
    of embryo transposable elements. Our findings demonstrate extensive reconfiguration
    of the endosperm methylation landscape that likely reinforces transposon silencing
    in the embryo.
article_processing_charge: No
article_type: original
author:
- first_name: Tzung-Fu
  full_name: Hsieh, Tzung-Fu
  last_name: Hsieh
- first_name: Christian A.
  full_name: Ibarra, Christian A.
  last_name: Ibarra
- first_name: Pedro
  full_name: Silva, Pedro
  last_name: Silva
- first_name: Assaf
  full_name: Zemach, Assaf
  last_name: Zemach
- first_name: Leor
  full_name: Eshed-Williams, Leor
  last_name: Eshed-Williams
- first_name: Robert L.
  full_name: Fischer, Robert L.
  last_name: Fischer
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
citation:
  ama: Hsieh T-F, Ibarra CA, Silva P, et al. Genome-wide demethylation of Arabidopsis
    endosperm. <i>Science</i>. 2009;324(5933):1451-1454. doi:<a href="https://doi.org/10.1126/science.1172417">10.1126/science.1172417</a>
  apa: Hsieh, T.-F., Ibarra, C. A., Silva, P., Zemach, A., Eshed-Williams, L., Fischer,
    R. L., &#38; Zilberman, D. (2009). Genome-wide demethylation of Arabidopsis endosperm.
    <i>Science</i>. American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1172417">https://doi.org/10.1126/science.1172417</a>
  chicago: Hsieh, Tzung-Fu, Christian A. Ibarra, Pedro Silva, Assaf Zemach, Leor Eshed-Williams,
    Robert L. Fischer, and Daniel Zilberman. “Genome-Wide Demethylation of Arabidopsis
    Endosperm.” <i>Science</i>. American Association for the Advancement of Science,
    2009. <a href="https://doi.org/10.1126/science.1172417">https://doi.org/10.1126/science.1172417</a>.
  ieee: T.-F. Hsieh <i>et al.</i>, “Genome-wide demethylation of Arabidopsis endosperm,”
    <i>Science</i>, vol. 324, no. 5933. American Association for the Advancement of
    Science, pp. 1451–1454, 2009.
  ista: Hsieh T-F, Ibarra CA, Silva P, Zemach A, Eshed-Williams L, Fischer RL, Zilberman
    D. 2009. Genome-wide demethylation of Arabidopsis endosperm. Science. 324(5933),
    1451–1454.
  mla: Hsieh, Tzung-Fu, et al. “Genome-Wide Demethylation of Arabidopsis Endosperm.”
    <i>Science</i>, vol. 324, no. 5933, American Association for the Advancement of
    Science, 2009, pp. 1451–54, doi:<a href="https://doi.org/10.1126/science.1172417">10.1126/science.1172417</a>.
  short: T.-F. Hsieh, C.A. Ibarra, P. Silva, A. Zemach, L. Eshed-Williams, R.L. Fischer,
    D. Zilberman, Science 324 (2009) 1451–1454.
date_created: 2021-06-04T08:55:41Z
date_published: 2009-06-12T00:00:00Z
date_updated: 2021-12-14T08:53:26Z
day: '12'
department:
- _id: DaZi
doi: 10.1126/science.1172417
extern: '1'
external_id:
  pmid:
  - '19520962'
intvolume: '       324'
issue: '5933'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4044190/
month: '06'
oa: 1
oa_version: Submitted Version
page: 1451-1454
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genome-wide demethylation of Arabidopsis endosperm
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 324
year: '2009'
...
---
_id: '964'
abstract:
- lang: eng
  text: A theory of the fluctuation-induced Nernst efl'ect is developed for a two-dimensional
    superconductor in a perpendicular magnetic field. First, we derive a simple phenomenological
    formula for the Nernst coefficient, which naturally explains the giant Nernst
    signal due to fluctuating Cooper pairs. The latter signal is shown to be large
    even far from the transition and may exceed by orders of magnitude the Fermi liquid
    terms. We also present a complete microscopic calculation of the Nernst coefficient
    for arbitrary magnetic fields and temperatures, which is based on the standard
    definition of heat current vertices. It is shown that the magnitude and the behavior
    of the Nernst signal observed experimentally in disordered superconducting films
    can be well understood on the basis of superconducting fluctuation theory.
author:
- first_name: Maksym
  full_name: Maksym Serbyn
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Mikhail
  full_name: Skvortsov, Mikhail A
  last_name: Skvortsov
- first_name: Andrei
  full_name: Varlamov, Andrei A
  last_name: Varlamov
- first_name: Victor
  full_name: Galitski, Victor M
  last_name: Galitski
citation:
  ama: 'Serbyn M, Skvortsov M, Varlamov A, Galitski V. Giant nernst effect due to
    fluctuating cooper Pairs in superconductors. In: Vol 1134. American Institute
    of Physics; 2009:140-145. doi:<a href="https://doi.org/10.1063/1.3149485">10.1063/1.3149485</a>'
  apa: Serbyn, M., Skvortsov, M., Varlamov, A., &#38; Galitski, V. (2009). Giant nernst
    effect due to fluctuating cooper Pairs in superconductors (Vol. 1134, pp. 140–145).
    Presented at the Landau Memorial Conference on Advances in Theoretical Physics,
    American Institute of Physics. <a href="https://doi.org/10.1063/1.3149485">https://doi.org/10.1063/1.3149485</a>
  chicago: Serbyn, Maksym, Mikhail Skvortsov, Andrei Varlamov, and Victor Galitski.
    “Giant Nernst Effect Due to Fluctuating Cooper Pairs in Superconductors,” 1134:140–45.
    American Institute of Physics, 2009. <a href="https://doi.org/10.1063/1.3149485">https://doi.org/10.1063/1.3149485</a>.
  ieee: M. Serbyn, M. Skvortsov, A. Varlamov, and V. Galitski, “Giant nernst effect
    due to fluctuating cooper Pairs in superconductors,” presented at the Landau Memorial
    Conference on Advances in Theoretical Physics, 2009, vol. 1134, pp. 140–145.
  ista: Serbyn M, Skvortsov M, Varlamov A, Galitski V. 2009. Giant nernst effect due
    to fluctuating cooper Pairs in superconductors. Landau Memorial Conference on
    Advances in Theoretical Physics vol. 1134, 140–145.
  mla: Serbyn, Maksym, et al. <i>Giant Nernst Effect Due to Fluctuating Cooper Pairs
    in Superconductors</i>. Vol. 1134, American Institute of Physics, 2009, pp. 140–45,
    doi:<a href="https://doi.org/10.1063/1.3149485">10.1063/1.3149485</a>.
  short: M. Serbyn, M. Skvortsov, A. Varlamov, V. Galitski, in:, American Institute
    of Physics, 2009, pp. 140–145.
conference:
  name: Landau Memorial Conference on Advances in Theoretical Physics
date_created: 2018-12-11T11:49:26Z
date_published: 2009-01-01T00:00:00Z
date_updated: 2021-01-12T08:22:17Z
day: '01'
doi: 10.1063/1.3149485
extern: 1
intvolume: '      1134'
month: '01'
page: 140 - 145
publication_status: published
publisher: American Institute of Physics
publist_id: '6435'
quality_controlled: 0
status: public
title: Giant nernst effect due to fluctuating cooper Pairs in superconductors
type: conference
volume: 1134
year: '2009'
...
---
_id: '110'
abstract:
- lang: eng
  text: In order to better understand magnetic reconnection and particle acceleration
    in solar flares, we compare the RHESSI hard X-ray (HXR) footpoint motions of three
    flares with a detailed study of the corresponding topology given by a Magnetic
    Charge Topology model. We analyze the relationship between the footpoint motions
    and topological spine lines and find that the examined footpoint sources move
    along spine lines. We present a three-dimensional topological model in which this
    movement can be understood. As reconnection proceeds, flux is transferred between
    the reconnecting domains, causing the separator to move. The movement of the separator\'s
    chromospheric ends, identified with the HXR footpoints, is along those spine lines
    on which the separator ends.
acknowledgement: This work was supported by RHESSI funds from the University of California
  at Berkeley through a contract, SA1868-26308PG, with Montana State University. Funding
  for our Research Experience for Undergraduates (REU) students was provided by NSF
  grant ATM-0243923.
author:
- first_name: Angela
  full_name: Des Jardins, Angela
  last_name: Des Jardins
- first_name: Richard
  full_name: Canfield, Richard
  last_name: Canfield
- first_name: Dana
  full_name: Longcope, Dana
  last_name: Longcope
- first_name: Crystal
  full_name: Fordyce, Crystal
  last_name: Fordyce
- first_name: Scott R
  full_name: Waitukaitis, Scott R
  id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
  last_name: Waitukaitis
  orcid: 0000-0002-2299-3176
citation:
  ama: 'Des Jardins A, Canfield R, Longcope D, Fordyce C, Waitukaitis SR. Reconnection
    in three dimensions: The role of spines in three eruptive flares. <i>The Astrophysical
    Journal</i>. 2009;693(2):1628-1636. doi:<a href="https://doi.org/10.1088/0004-637X/693/2/1628">10.1088/0004-637X/693/2/1628</a>'
  apa: 'Des Jardins, A., Canfield, R., Longcope, D., Fordyce, C., &#38; Waitukaitis,
    S. R. (2009). Reconnection in three dimensions: The role of spines in three eruptive
    flares. <i>The Astrophysical Journal</i>. IOP Publishing Ltd. <a href="https://doi.org/10.1088/0004-637X/693/2/1628">https://doi.org/10.1088/0004-637X/693/2/1628</a>'
  chicago: 'Des Jardins, Angela, Richard Canfield, Dana Longcope, Crystal Fordyce,
    and Scott R Waitukaitis. “Reconnection in Three Dimensions: The Role of Spines
    in Three Eruptive Flares.” <i>The Astrophysical Journal</i>. IOP Publishing Ltd.,
    2009. <a href="https://doi.org/10.1088/0004-637X/693/2/1628">https://doi.org/10.1088/0004-637X/693/2/1628</a>.'
  ieee: 'A. Des Jardins, R. Canfield, D. Longcope, C. Fordyce, and S. R. Waitukaitis,
    “Reconnection in three dimensions: The role of spines in three eruptive flares,”
    <i>The Astrophysical Journal</i>, vol. 693, no. 2. IOP Publishing Ltd., pp. 1628–1636,
    2009.'
  ista: 'Des Jardins A, Canfield R, Longcope D, Fordyce C, Waitukaitis SR. 2009. Reconnection
    in three dimensions: The role of spines in three eruptive flares. The Astrophysical
    Journal. 693(2), 1628–1636.'
  mla: 'Des Jardins, Angela, et al. “Reconnection in Three Dimensions: The Role of
    Spines in Three Eruptive Flares.” <i>The Astrophysical Journal</i>, vol. 693,
    no. 2, IOP Publishing Ltd., 2009, pp. 1628–36, doi:<a href="https://doi.org/10.1088/0004-637X/693/2/1628">10.1088/0004-637X/693/2/1628</a>.'
  short: A. Des Jardins, R. Canfield, D. Longcope, C. Fordyce, S.R. Waitukaitis, The
    Astrophysical Journal 693 (2009) 1628–1636.
date_created: 2018-12-11T11:44:41Z
date_published: 2009-03-10T00:00:00Z
date_updated: 2021-01-12T06:48:16Z
day: '10'
doi: 10.1088/0004-637X/693/2/1628
extern: '1'
intvolume: '       693'
issue: '2'
language:
- iso: eng
month: '03'
oa_version: None
page: 1628 - 1636
publication: The Astrophysical Journal
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '7944'
quality_controlled: '1'
status: public
title: 'Reconnection in three dimensions: The role of spines in three eruptive flares'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 693
year: '2009'
...
---
_id: '111'
abstract:
- lang: eng
  text: Thin streams of liquid commonly break up into characteristic droplet patterns
    owing to the surface-tension-driven PlateauRayleigh instability 1-3. Very similar
    patterns are observed when initially uniform streams of dry granular material
    break up into clusters of grains4-6, even though flows of macroscopic particles
    are considered to lack surface tension7,8. Recent studies on freely falling granular
    streams tracked fluctuations in the stream profile9, but the clustering mechanism
    remained unresolved because the full evolution of the instability could not be
    observed. Here we demonstrate that the cluster formation is driven by minute,
    nanoNewton cohesive forces that arise from a combination of van der Waals interactions
    and capillary bridges between nanometre-scale surface asperities. Our experiments
    involve high-speed video imaging of the granular stream in the co-moving frame,
    control over the properties of the grain surfaces and the use of atomic force
    microscopy to measure grain-grain interactions. The cohesive forces that we measure
    correspond to an equivalent surface tension five orders of magnitude below that,
    of ordinary liquids. We find that, the shapes of these weakly cohesive, non-thermal
    clusters of macroscopic particles closely resemble droplets resulting from thermally
    induced rupture of liquid nanojets 10-12.
acknowledgement: This work was supported by NSF through its MRSEC programme and the
  Inter-American Materials Collaboration Chicago-Chile, and by the Keck Initiative
  for Ultrafast Imaging at the University of Chicago.
author:
- first_name: John
  full_name: Royer, John
  last_name: Royer
- first_name: Daniel
  full_name: Evans, Daniel
  last_name: Evans
- first_name: Loreto
  full_name: Oyarte, Loreto
  last_name: Oyarte
- first_name: Qiti
  full_name: Guo, Qiti
  last_name: Guo
- first_name: Eliot
  full_name: Kapit, Eliot
  last_name: Kapit
- first_name: Matthias
  full_name: Möbius, Matthias
  last_name: Möbius
- first_name: Scott R
  full_name: Waitukaitis, Scott R
  id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
  last_name: Waitukaitis
  orcid: 0000-0002-2299-3176
- first_name: Heinrich
  full_name: Jaeger, Heinrich
  last_name: Jaeger
citation:
  ama: Royer J, Evans D, Oyarte L, et al. High-speed tracking of rupture and clustering
    in freely falling granular streams. <i>Nature</i>. 2009;459(7250):1110-1113. doi:<a
    href="https://doi.org/10.1038/nature08115">10.1038/nature08115</a>
  apa: Royer, J., Evans, D., Oyarte, L., Guo, Q., Kapit, E., Möbius, M., … Jaeger,
    H. (2009). High-speed tracking of rupture and clustering in freely falling granular
    streams. <i>Nature</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/nature08115">https://doi.org/10.1038/nature08115</a>
  chicago: Royer, John, Daniel Evans, Loreto Oyarte, Qiti Guo, Eliot Kapit, Matthias
    Möbius, Scott R Waitukaitis, and Heinrich Jaeger. “High-Speed Tracking of Rupture
    and Clustering in Freely Falling Granular Streams.” <i>Nature</i>. Nature Publishing
    Group, 2009. <a href="https://doi.org/10.1038/nature08115">https://doi.org/10.1038/nature08115</a>.
  ieee: J. Royer <i>et al.</i>, “High-speed tracking of rupture and clustering in
    freely falling granular streams,” <i>Nature</i>, vol. 459, no. 7250. Nature Publishing
    Group, pp. 1110–1113, 2009.
  ista: Royer J, Evans D, Oyarte L, Guo Q, Kapit E, Möbius M, Waitukaitis SR, Jaeger
    H. 2009. High-speed tracking of rupture and clustering in freely falling granular
    streams. Nature. 459(7250), 1110–1113.
  mla: Royer, John, et al. “High-Speed Tracking of Rupture and Clustering in Freely
    Falling Granular Streams.” <i>Nature</i>, vol. 459, no. 7250, Nature Publishing
    Group, 2009, pp. 1110–13, doi:<a href="https://doi.org/10.1038/nature08115">10.1038/nature08115</a>.
  short: J. Royer, D. Evans, L. Oyarte, Q. Guo, E. Kapit, M. Möbius, S.R. Waitukaitis,
    H. Jaeger, Nature 459 (2009) 1110–1113.
date_created: 2018-12-11T11:44:41Z
date_published: 2009-06-25T00:00:00Z
date_updated: 2021-01-12T06:48:21Z
day: '25'
doi: 10.1038/nature08115
extern: '1'
intvolume: '       459'
issue: '7250'
language:
- iso: eng
month: '06'
oa_version: None
page: 1110 - 1113
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '7943'
quality_controlled: '1'
status: public
title: High-speed tracking of rupture and clustering in freely falling granular streams
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 459
year: '2009'
...
---
_id: '11103'
abstract:
- lang: eng
  text: Over the last decade, the nuclear envelope (NE) has emerged as a key component
    in the organization and function of the nuclear genome. As many as 100 different
    proteins are thought to specifically localize to this double membrane that separates
    the cytoplasm and the nucleoplasm of eukaryotic cells. Selective portals through
    the NE are formed at sites where the inner and outer nuclear membranes are fused,
    and the coincident assembly of ∼30 proteins into nuclear pore complexes occurs.
    These nuclear pore complexes are essential for the control of nucleocytoplasmic
    exchange. Many of the NE and nuclear pore proteins are thought to play crucial
    roles in gene regulation and thus are increasingly linked to human diseases.
article_processing_charge: No
article_type: review
author:
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
- first_name: Susan R.
  full_name: Wente, Susan R.
  last_name: Wente
citation:
  ama: 'Hetzer M, Wente SR. Border control at the nucleus: Biogenesis and organization
    of the nuclear membrane and pore complexes. <i>Developmental Cell</i>. 2009;17(5):606-616.
    doi:<a href="https://doi.org/10.1016/j.devcel.2009.10.007">10.1016/j.devcel.2009.10.007</a>'
  apa: 'Hetzer, M., &#38; Wente, S. R. (2009). Border control at the nucleus: Biogenesis
    and organization of the nuclear membrane and pore complexes. <i>Developmental
    Cell</i>. Elsevier. <a href="https://doi.org/10.1016/j.devcel.2009.10.007">https://doi.org/10.1016/j.devcel.2009.10.007</a>'
  chicago: 'Hetzer, Martin, and Susan R. Wente. “Border Control at the Nucleus: Biogenesis
    and Organization of the Nuclear Membrane and Pore Complexes.” <i>Developmental
    Cell</i>. Elsevier, 2009. <a href="https://doi.org/10.1016/j.devcel.2009.10.007">https://doi.org/10.1016/j.devcel.2009.10.007</a>.'
  ieee: 'M. Hetzer and S. R. Wente, “Border control at the nucleus: Biogenesis and
    organization of the nuclear membrane and pore complexes,” <i>Developmental Cell</i>,
    vol. 17, no. 5. Elsevier, pp. 606–616, 2009.'
  ista: 'Hetzer M, Wente SR. 2009. Border control at the nucleus: Biogenesis and organization
    of the nuclear membrane and pore complexes. Developmental Cell. 17(5), 606–616.'
  mla: 'Hetzer, Martin, and Susan R. Wente. “Border Control at the Nucleus: Biogenesis
    and Organization of the Nuclear Membrane and Pore Complexes.” <i>Developmental
    Cell</i>, vol. 17, no. 5, Elsevier, 2009, pp. 606–16, doi:<a href="https://doi.org/10.1016/j.devcel.2009.10.007">10.1016/j.devcel.2009.10.007</a>.'
  short: M. Hetzer, S.R. Wente, Developmental Cell 17 (2009) 606–616.
date_created: 2022-04-07T07:53:45Z
date_published: 2009-11-17T00:00:00Z
date_updated: 2022-07-18T08:55:01Z
day: '17'
doi: 10.1016/j.devcel.2009.10.007
extern: '1'
external_id:
  pmid:
  - '19922866'
intvolume: '        17'
issue: '5'
keyword:
- Developmental Biology
- Cell Biology
- General Biochemistry
- Genetics and Molecular Biology
- Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.devcel.2009.10.007
month: '11'
oa: 1
oa_version: Published Version
page: 606-616
pmid: 1
publication: Developmental Cell
publication_identifier:
  issn:
  - 1534-5807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Border control at the nucleus: Biogenesis and organization of the nuclear
  membrane and pore complexes'
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 17
year: '2009'
...
---
_id: '11105'
abstract:
- lang: eng
  text: Nuclear-pore complexes (NPCs) are large protein channels that span the nuclear
    envelope (NE), which is a double membrane that encloses the nuclear genome of
    eukaryotes. Each of the typically 2,000–4,000 pores in the NE of vertebrate cells
    is composed of multiple copies of 30 different proteins known as nucleoporins.
    The evolutionarily conserved NPC proteins have the well-characterized function
    of mediating the transport of molecules between the nucleoplasm and the cytoplasm.
    Mutations in nucleoporins are often linked to specific developmental defects and
    disease, and the resulting phenotypes are usually interpreted as the consequences
    of perturbed nuclear transport activity. However, recent evidence suggests that
    NPCs have additional functions in chromatin organization and gene regulation,
    some of which might be independent of nuclear transport. Here, we review the transport-dependent
    and transport-independent roles of NPCs in the regulation of nuclear function
    and gene expression.
article_processing_charge: No
article_type: original
author:
- first_name: Maya
  full_name: Capelson, Maya
  last_name: Capelson
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Capelson M, Hetzer M. The role of nuclear pores in gene regulation, development
    and disease. <i>EMBO reports</i>. 2009;10(7):697-705. doi:<a href="https://doi.org/10.1038/embor.2009.147">10.1038/embor.2009.147</a>
  apa: Capelson, M., &#38; Hetzer, M. (2009). The role of nuclear pores in gene regulation,
    development and disease. <i>EMBO Reports</i>. EMBO. <a href="https://doi.org/10.1038/embor.2009.147">https://doi.org/10.1038/embor.2009.147</a>
  chicago: Capelson, Maya, and Martin Hetzer. “The Role of Nuclear Pores in Gene Regulation,
    Development and Disease.” <i>EMBO Reports</i>. EMBO, 2009. <a href="https://doi.org/10.1038/embor.2009.147">https://doi.org/10.1038/embor.2009.147</a>.
  ieee: M. Capelson and M. Hetzer, “The role of nuclear pores in gene regulation,
    development and disease,” <i>EMBO reports</i>, vol. 10, no. 7. EMBO, pp. 697–705,
    2009.
  ista: Capelson M, Hetzer M. 2009. The role of nuclear pores in gene regulation,
    development and disease. EMBO reports. 10(7), 697–705.
  mla: Capelson, Maya, and Martin Hetzer. “The Role of Nuclear Pores in Gene Regulation,
    Development and Disease.” <i>EMBO Reports</i>, vol. 10, no. 7, EMBO, 2009, pp.
    697–705, doi:<a href="https://doi.org/10.1038/embor.2009.147">10.1038/embor.2009.147</a>.
  short: M. Capelson, M. Hetzer, EMBO Reports 10 (2009) 697–705.
date_created: 2022-04-07T07:54:06Z
date_published: 2009-07-01T00:00:00Z
date_updated: 2022-07-18T08:42:44Z
day: '01'
doi: 10.1038/embor.2009.147
extern: '1'
external_id:
  pmid:
  - '19543230'
intvolume: '        10'
issue: '7'
keyword:
- Genetics
- Molecular Biology
- Biochemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/embor.2009.147
month: '07'
oa: 1
oa_version: Published Version
page: 697-705
pmid: 1
publication: EMBO reports
publication_identifier:
  eissn:
  - 1469-3178
  issn:
  - 1469-221X
publication_status: published
publisher: EMBO
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/embor.2009.176
scopus_import: '1'
status: public
title: The role of nuclear pores in gene regulation, development and disease
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 10
year: '2009'
...
---
_id: '11106'
abstract:
- lang: eng
  text: Formation of the nuclear envelope (NE) around segregated chromosomes occurs
    by the reshaping of the endoplasmic reticulum (ER), a reservoir for disassembled
    nuclear membrane components during mitosis. In this study, we show that inner
    nuclear membrane proteins such as lamin B receptor (LBR), MAN1, Lap2β, and the
    trans-membrane nucleoporins Ndc1 and POM121 drive the spreading of ER membranes
    into the emerging NE via their capacity to bind chromatin in a collaborative manner.
    Despite their redundant functions, decreasing the levels of any of these trans-membrane
    proteins by RNAi-mediated knockdown delayed NE formation, whereas increasing the
    levels of any of them had the opposite effect. Furthermore, acceleration of NE
    formation interferes with chromosome separation during mitosis, indicating that
    the time frame over which chromatin becomes membrane enclosed is physiologically
    relevant and regulated. These data suggest that functionally distinct classes
    of chromatin-interacting membrane proteins, which are present at nonsaturating
    levels, collaborate to rapidly reestablish the nuclear compartment at the end
    of mitosis.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel J.
  full_name: Anderson, Daniel J.
  last_name: Anderson
- first_name: Jesse D.
  full_name: Vargas, Jesse D.
  last_name: Vargas
- first_name: Joshua P.
  full_name: Hsiao, Joshua P.
  last_name: Hsiao
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Anderson DJ, Vargas JD, Hsiao JP, Hetzer M. Recruitment of functionally distinct
    membrane proteins to chromatin mediates nuclear envelope formation in vivo. <i>Journal
    of Cell Biology</i>. 2009;186(2):183-191. doi:<a href="https://doi.org/10.1083/jcb.200901106">10.1083/jcb.200901106</a>
  apa: Anderson, D. J., Vargas, J. D., Hsiao, J. P., &#38; Hetzer, M. (2009). Recruitment
    of functionally distinct membrane proteins to chromatin mediates nuclear envelope
    formation in vivo. <i>Journal of Cell Biology</i>. Rockefeller University Press.
    <a href="https://doi.org/10.1083/jcb.200901106">https://doi.org/10.1083/jcb.200901106</a>
  chicago: Anderson, Daniel J., Jesse D. Vargas, Joshua P. Hsiao, and Martin Hetzer.
    “Recruitment of Functionally Distinct Membrane Proteins to Chromatin Mediates
    Nuclear Envelope Formation in Vivo.” <i>Journal of Cell Biology</i>. Rockefeller
    University Press, 2009. <a href="https://doi.org/10.1083/jcb.200901106">https://doi.org/10.1083/jcb.200901106</a>.
  ieee: D. J. Anderson, J. D. Vargas, J. P. Hsiao, and M. Hetzer, “Recruitment of
    functionally distinct membrane proteins to chromatin mediates nuclear envelope
    formation in vivo,” <i>Journal of Cell Biology</i>, vol. 186, no. 2. Rockefeller
    University Press, pp. 183–191, 2009.
  ista: Anderson DJ, Vargas JD, Hsiao JP, Hetzer M. 2009. Recruitment of functionally
    distinct membrane proteins to chromatin mediates nuclear envelope formation in
    vivo. Journal of Cell Biology. 186(2), 183–191.
  mla: Anderson, Daniel J., et al. “Recruitment of Functionally Distinct Membrane
    Proteins to Chromatin Mediates Nuclear Envelope Formation in Vivo.” <i>Journal
    of Cell Biology</i>, vol. 186, no. 2, Rockefeller University Press, 2009, pp.
    183–91, doi:<a href="https://doi.org/10.1083/jcb.200901106">10.1083/jcb.200901106</a>.
  short: D.J. Anderson, J.D. Vargas, J.P. Hsiao, M. Hetzer, Journal of Cell Biology
    186 (2009) 183–191.
date_created: 2022-04-07T07:54:18Z
date_published: 2009-07-20T00:00:00Z
date_updated: 2022-07-18T08:58:35Z
day: '20'
doi: 10.1083/jcb.200901106
extern: '1'
external_id:
  pmid:
  - '19620630'
intvolume: '       186'
issue: '2'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1083/jcb.200901106
month: '07'
oa: 1
oa_version: Published Version
page: 183-191
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1083/jcb.20090110620090903c
scopus_import: '1'
status: public
title: Recruitment of functionally distinct membrane proteins to chromatin mediates
  nuclear envelope formation in vivo
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 186
year: '2009'
...
---
_id: '11107'
abstract:
- lang: eng
  text: Nucleocytoplasmic transport occurs exclusively through nuclear pore complexes
    (NPCs) embedded in pores formed by inner and outer nuclear membrane fusion. The
    mechanism for de novo pore and NPC biogenesis remains unclear. Reticulons (RTNs)
    and Yop1/DP1 are conserved membrane protein families required to form and maintain
    the tubular endoplasmic reticulum (ER) and the postmitotic nuclear envelope. In
    this study, we report that members of the RTN and Yop1/DP1 families are required
    for nuclear pore formation. Analysis of Saccharomyces cerevisiae prp20-G282S and
    nup133Δ NPC assembly mutants revealed perturbations in Rtn1–green fluorescent
    protein (GFP) and Yop1-GFP ER distribution and colocalization to NPC clusters.
    Combined deletion of RTN1 and YOP1 resulted in NPC clustering, nuclear import
    defects, and synthetic lethality with the additional absence of Pom34, Pom152,
    and Nup84 subcomplex members. We tested for a direct role in NPC biogenesis using
    Xenopus laevis in vitro assays and found that anti-Rtn4a antibodies specifically
    inhibited de novo nuclear pore formation. We hypothesize that these ER membrane–bending
    proteins mediate early NPC assembly steps.
article_processing_charge: No
article_type: original
author:
- first_name: T. Renee
  full_name: Dawson, T. Renee
  last_name: Dawson
- first_name: Michelle D.
  full_name: Lazarus, Michelle D.
  last_name: Lazarus
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
- first_name: Susan R.
  full_name: Wente, Susan R.
  last_name: Wente
citation:
  ama: Dawson TR, Lazarus MD, Hetzer M, Wente SR. ER membrane–bending proteins are
    necessary for de novo nuclear pore formation. <i>Journal of Cell Biology</i>.
    2009;184(5):659-675. doi:<a href="https://doi.org/10.1083/jcb.200806174">10.1083/jcb.200806174</a>
  apa: Dawson, T. R., Lazarus, M. D., Hetzer, M., &#38; Wente, S. R. (2009). ER membrane–bending
    proteins are necessary for de novo nuclear pore formation. <i>Journal of Cell
    Biology</i>. Rockefeller University Press. <a href="https://doi.org/10.1083/jcb.200806174">https://doi.org/10.1083/jcb.200806174</a>
  chicago: Dawson, T. Renee, Michelle D. Lazarus, Martin Hetzer, and Susan R. Wente.
    “ER Membrane–Bending Proteins Are Necessary for de Novo Nuclear Pore Formation.”
    <i>Journal of Cell Biology</i>. Rockefeller University Press, 2009. <a href="https://doi.org/10.1083/jcb.200806174">https://doi.org/10.1083/jcb.200806174</a>.
  ieee: T. R. Dawson, M. D. Lazarus, M. Hetzer, and S. R. Wente, “ER membrane–bending
    proteins are necessary for de novo nuclear pore formation,” <i>Journal of Cell
    Biology</i>, vol. 184, no. 5. Rockefeller University Press, pp. 659–675, 2009.
  ista: Dawson TR, Lazarus MD, Hetzer M, Wente SR. 2009. ER membrane–bending proteins
    are necessary for de novo nuclear pore formation. Journal of Cell Biology. 184(5),
    659–675.
  mla: Dawson, T. Renee, et al. “ER Membrane–Bending Proteins Are Necessary for de
    Novo Nuclear Pore Formation.” <i>Journal of Cell Biology</i>, vol. 184, no. 5,
    Rockefeller University Press, 2009, pp. 659–75, doi:<a href="https://doi.org/10.1083/jcb.200806174">10.1083/jcb.200806174</a>.
  short: T.R. Dawson, M.D. Lazarus, M. Hetzer, S.R. Wente, Journal of Cell Biology
    184 (2009) 659–675.
date_created: 2022-04-07T07:54:44Z
date_published: 2009-03-09T00:00:00Z
date_updated: 2022-07-18T08:55:05Z
day: '09'
doi: 10.1083/jcb.200806174
extern: '1'
external_id:
  pmid:
  - '19273614'
intvolume: '       184'
issue: '5'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1083/jcb.200806174
month: '03'
oa: 1
oa_version: Published Version
page: 659-675
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: ER membrane–bending proteins are necessary for de novo nuclear pore formation
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 184
year: '2009'
...
---
_id: '11108'
abstract:
- lang: eng
  text: In dividing cells, nuclear pore complexes (NPCs) disassemble during mitosis
    and reassemble into the newly forming nuclei. However, the fate of nuclear pores
    in postmitotic cells is unknown. Here, we show that NPCs, unlike other nuclear
    structures, do not turn over in differentiated cells. While a subset of NPC components,
    like Nup153 and Nup50, are continuously exchanged, scaffold nucleoporins, like
    the Nup107/160 complex, are extremely long-lived and remain incorporated in the
    nuclear membrane during the entire cellular life span. Besides the lack of nucleoporin
    expression and NPC turnover, we discovered an age-related deterioration of NPCs,
    leading to an increase in nuclear permeability and the leaking of cytoplasmic
    proteins into the nucleus. Our finding that nuclear “leakiness” is dramatically
    accelerated during aging and that a subset of nucleoporins is oxidatively damaged
    in old cells suggests that the accumulation of damage at the NPC might be a crucial
    aging event.
article_processing_charge: No
article_type: original
author:
- first_name: Maximiliano A.
  full_name: D'Angelo, Maximiliano A.
  last_name: D'Angelo
- first_name: Marcela
  full_name: Raices, Marcela
  last_name: Raices
- first_name: Siler H.
  full_name: Panowski, Siler H.
  last_name: Panowski
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: D’Angelo MA, Raices M, Panowski SH, Hetzer M. Age-dependent deterioration of
    nuclear pore complexes causes a loss of nuclear integrity in postmitotic cells.
    <i>Cell</i>. 2009;136(2):284-295. doi:<a href="https://doi.org/10.1016/j.cell.2008.11.037">10.1016/j.cell.2008.11.037</a>
  apa: D’Angelo, M. A., Raices, M., Panowski, S. H., &#38; Hetzer, M. (2009). Age-dependent
    deterioration of nuclear pore complexes causes a loss of nuclear integrity in
    postmitotic cells. <i>Cell</i>. Elsevier. <a href="https://doi.org/10.1016/j.cell.2008.11.037">https://doi.org/10.1016/j.cell.2008.11.037</a>
  chicago: D’Angelo, Maximiliano A., Marcela Raices, Siler H. Panowski, and Martin
    Hetzer. “Age-Dependent Deterioration of Nuclear Pore Complexes Causes a Loss of
    Nuclear Integrity in Postmitotic Cells.” <i>Cell</i>. Elsevier, 2009. <a href="https://doi.org/10.1016/j.cell.2008.11.037">https://doi.org/10.1016/j.cell.2008.11.037</a>.
  ieee: M. A. D’Angelo, M. Raices, S. H. Panowski, and M. Hetzer, “Age-dependent deterioration
    of nuclear pore complexes causes a loss of nuclear integrity in postmitotic cells,”
    <i>Cell</i>, vol. 136, no. 2. Elsevier, pp. 284–295, 2009.
  ista: D’Angelo MA, Raices M, Panowski SH, Hetzer M. 2009. Age-dependent deterioration
    of nuclear pore complexes causes a loss of nuclear integrity in postmitotic cells.
    Cell. 136(2), 284–295.
  mla: D’Angelo, Maximiliano A., et al. “Age-Dependent Deterioration of Nuclear Pore
    Complexes Causes a Loss of Nuclear Integrity in Postmitotic Cells.” <i>Cell</i>,
    vol. 136, no. 2, Elsevier, 2009, pp. 284–95, doi:<a href="https://doi.org/10.1016/j.cell.2008.11.037">10.1016/j.cell.2008.11.037</a>.
  short: M.A. D’Angelo, M. Raices, S.H. Panowski, M. Hetzer, Cell 136 (2009) 284–295.
date_created: 2022-04-07T07:54:52Z
date_published: 2009-01-23T00:00:00Z
date_updated: 2022-07-18T08:55:29Z
day: '23'
doi: 10.1016/j.cell.2008.11.037
extern: '1'
external_id:
  pmid:
  - '19167330'
intvolume: '       136'
issue: '2'
keyword:
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.cell.2008.11.037
month: '01'
oa: 1
oa_version: Published Version
page: 284-295
pmid: 1
publication: Cell
publication_identifier:
  issn:
  - 0092-8674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Age-dependent deterioration of nuclear pore complexes causes a loss of nuclear
  integrity in postmitotic cells
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 136
year: '2009'
...
---
_id: '11752'
abstract:
- lang: eng
  text: We propose a model which suggests that structural martensitic transitions
    are related to significant changes in the electronic structure, and are effected
    by high-magnetic fields. The magnetic field dependence is considered unusual as
    many influential investigations of martensitic transitions have emphasized that
    the structural transitions are primarily lattice dynamical and are driven by the
    entropy due to the phonons. We provide a theoretical framework which can be used
    to describe the effect of high magnetic field on the transition and lattice dynamics
    in which the field dependence originates from the dielectric constant. The model
    is compared with some recent experimental results.
alternative_title:
- JPCS
article_number: '032062'
article_processing_charge: No
author:
- first_name: Xiaodong
  full_name: Yang, Xiaodong
  last_name: Yang
- first_name: Peter S
  full_name: Riseborough, Peter S
  last_name: Riseborough
- first_name: Kimberly A
  full_name: Modic, Kimberly A
  id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
  last_name: Modic
  orcid: 0000-0001-9760-3147
- first_name: R A
  full_name: Fisher, R A
  last_name: Fisher
- first_name: C P
  full_name: Oppeil, C P
  last_name: Oppeil
- first_name: T R
  full_name: Finlayson, T R
  last_name: Finlayson
- first_name: J C
  full_name: Cooley, J C
  last_name: Cooley
- first_name: J L
  full_name: Smith, J L
  last_name: Smith
- first_name: P A
  full_name: Goddard, P A
  last_name: Goddard
- first_name: A V
  full_name: Silhanek, A V
  last_name: Silhanek
- first_name: J C
  full_name: Lashley, J C
  last_name: Lashley
citation:
  ama: 'Yang X, Riseborough PS, Modic KA, et al. Influence of magnetic fields on structural
    martensitic transitions. In: <i>Journal of Physics: Conference Series</i>. Vol
    200. IOP Publishing; 2009. doi:<a href="https://doi.org/10.1088/1742-6596/200/3/032062">10.1088/1742-6596/200/3/032062</a>'
  apa: 'Yang, X., Riseborough, P. S., Modic, K. A., Fisher, R. A., Oppeil, C. P.,
    Finlayson, T. R., … Lashley, J. C. (2009). Influence of magnetic fields on structural
    martensitic transitions. In <i>Journal of Physics: Conference Series</i> (Vol.
    200). Karlsruhe, Germany: IOP Publishing. <a href="https://doi.org/10.1088/1742-6596/200/3/032062">https://doi.org/10.1088/1742-6596/200/3/032062</a>'
  chicago: 'Yang, Xiaodong, Peter S Riseborough, Kimberly A Modic, R A Fisher, C P
    Oppeil, T R Finlayson, J C Cooley, et al. “Influence of Magnetic Fields on Structural
    Martensitic Transitions.” In <i>Journal of Physics: Conference Series</i>, Vol.
    200. IOP Publishing, 2009. <a href="https://doi.org/10.1088/1742-6596/200/3/032062">https://doi.org/10.1088/1742-6596/200/3/032062</a>.'
  ieee: 'X. Yang <i>et al.</i>, “Influence of magnetic fields on structural martensitic
    transitions,” in <i>Journal of Physics: Conference Series</i>, Karlsruhe, Germany,
    2009, vol. 200, no. 3.'
  ista: 'Yang X, Riseborough PS, Modic KA, Fisher RA, Oppeil CP, Finlayson TR, Cooley
    JC, Smith JL, Goddard PA, Silhanek AV, Lashley JC. 2009. Influence of magnetic
    fields on structural martensitic transitions. Journal of Physics: Conference Series.
    ICM: International Conference on Magnetism, JPCS, vol. 200, 032062.'
  mla: 'Yang, Xiaodong, et al. “Influence of Magnetic Fields on Structural Martensitic
    Transitions.” <i>Journal of Physics: Conference Series</i>, vol. 200, no. 3, 032062,
    IOP Publishing, 2009, doi:<a href="https://doi.org/10.1088/1742-6596/200/3/032062">10.1088/1742-6596/200/3/032062</a>.'
  short: 'X. Yang, P.S. Riseborough, K.A. Modic, R.A. Fisher, C.P. Oppeil, T.R. Finlayson,
    J.C. Cooley, J.L. Smith, P.A. Goddard, A.V. Silhanek, J.C. Lashley, in:, Journal
    of Physics: Conference Series, IOP Publishing, 2009.'
conference:
  end_date: 2009-07-31
  location: Karlsruhe, Germany
  name: 'ICM: International Conference on Magnetism'
  start_date: 2009-07-26
date_created: 2022-08-08T08:43:04Z
date_published: 2009-07-01T00:00:00Z
date_updated: 2023-02-23T12:58:33Z
day: '01'
doi: 10.1088/1742-6596/200/3/032062
extern: '1'
intvolume: '       200'
issue: '3'
language:
- iso: eng
month: '07'
oa_version: None
publication: 'Journal of Physics: Conference Series'
publication_identifier:
  eissn:
  - 1742-6596
  issn:
  - 1742-6588
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
related_material:
  record:
  - id: '7080'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: Influence of magnetic fields on structural martensitic transitions
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 200
year: '2009'
...
---
_id: '11799'
abstract:
- lang: eng
  text: We study the problem of matching bidders to items where each bidder i has
    general, strictly monotonic utility functions u i,j (p j ) expressing her utility
    of being matched to item j at price p j . For this setting we prove that a bidder
    optimal outcome always exists, even when the utility functions are non-linear
    and non-continuous. Furthermore, we give an algorithm to find such a solution.
    Although the running time of this algorithm is exponential in the number of items,
    it is polynomial in the number of bidders.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Paul
  full_name: Dütting, Paul
  last_name: Dütting
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Ingmar
  full_name: Weber, Ingmar
  last_name: Weber
citation:
  ama: 'Dütting P, Henzinger MH, Weber I. Bidder optimal assignments for general utilities.
    In: <i>5th International Workshop on Internet and Network Economics</i>. Vol 5929.
    Springer Nature; 2009:575-582. doi:<a href="https://doi.org/10.1007/978-3-642-10841-9_58">10.1007/978-3-642-10841-9_58</a>'
  apa: 'Dütting, P., Henzinger, M. H., &#38; Weber, I. (2009). Bidder optimal assignments
    for general utilities. In <i>5th International Workshop on Internet and Network
    Economics</i> (Vol. 5929, pp. 575–582). Rome, Italy: Springer Nature. <a href="https://doi.org/10.1007/978-3-642-10841-9_58">https://doi.org/10.1007/978-3-642-10841-9_58</a>'
  chicago: Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “Bidder Optimal Assignments
    for General Utilities.” In <i>5th International Workshop on Internet and Network
    Economics</i>, 5929:575–82. Springer Nature, 2009. <a href="https://doi.org/10.1007/978-3-642-10841-9_58">https://doi.org/10.1007/978-3-642-10841-9_58</a>.
  ieee: P. Dütting, M. H. Henzinger, and I. Weber, “Bidder optimal assignments for
    general utilities,” in <i>5th International Workshop on Internet and Network Economics</i>,
    Rome, Italy, 2009, vol. 5929, pp. 575–582.
  ista: 'Dütting P, Henzinger MH, Weber I. 2009. Bidder optimal assignments for general
    utilities. 5th International Workshop on Internet and Network Economics. WINE:
    International Conference on Web and Internet Economics, LNCS, vol. 5929, 575–582.'
  mla: Dütting, Paul, et al. “Bidder Optimal Assignments for General Utilities.” <i>5th
    International Workshop on Internet and Network Economics</i>, vol. 5929, Springer
    Nature, 2009, pp. 575–82, doi:<a href="https://doi.org/10.1007/978-3-642-10841-9_58">10.1007/978-3-642-10841-9_58</a>.
  short: P. Dütting, M.H. Henzinger, I. Weber, in:, 5th International Workshop on
    Internet and Network Economics, Springer Nature, 2009, pp. 575–582.
conference:
  end_date: 2009-12-18
  location: Rome, Italy
  name: 'WINE: International Conference on Web and Internet Economics'
  start_date: 2009-12-14
date_created: 2022-08-11T12:33:38Z
date_published: 2009-12-01T00:00:00Z
date_updated: 2023-02-21T16:32:35Z
day: '01'
doi: 10.1007/978-3-642-10841-9_58
extern: '1'
intvolume: '      5929'
language:
- iso: eng
month: '12'
oa_version: None
page: 575-582
publication: 5th International Workshop on Internet and Network Economics
publication_identifier:
  isbn:
  - '9783642108402'
  issn:
  - 1611-3349
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '11902'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: Bidder optimal assignments for general utilities
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5929
year: '2009'
...
---
_id: '11905'
abstract:
- lang: eng
  text: Given only the URL of a web page, can we identify its topic? This is the question
    that we examine in this paper. Usually, web pages are classified using their content,
    but a URL-only classifier is preferable, (i) when speed is crucial, (ii) to enable
    content filtering before an (objection-able) web page is downloaded, (iii) when
    a page's content is hidden in images, (iv) to annotate hyperlinks in a personalized
    web browser, without fetching the target page, and (v) when a focused crawler
    wants to infer the topic of a target page before devoting bandwidth to download
    it. We apply a machine learning approach to the topic identification task and
    evaluate its performance in extensive experiments on categorized web pages from
    the Open Directory Project (ODP). When training separate binary classifiers for
    each topic, we achieve typical F-measure values between 80 and 85, and a typical
    precision of around 85. We also ran experiments on a small data set of university
    web pages. For the task of classifying these pages into faculty, student, course
    and project pages, our methods improve over previous approaches by 13.8 points
    of F-measure.
article_processing_charge: No
author:
- first_name: Eda
  full_name: Baykan, Eda
  last_name: Baykan
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Ludmila
  full_name: Marian, Ludmila
  last_name: Marian
- first_name: Ingmar
  full_name: Weber, Ingmar
  last_name: Weber
citation:
  ama: 'Baykan E, Henzinger MH, Marian L, Weber I. Purely URL-based topic classification.
    In: <i>18th International World Wide Web Conference</i>. Association for Computing
    Machinery; 2009:1109-1110. doi:<a href="https://doi.org/10.1145/1526709.1526880">10.1145/1526709.1526880</a>'
  apa: 'Baykan, E., Henzinger, M. H., Marian, L., &#38; Weber, I. (2009). Purely URL-based
    topic classification. In <i>18th International World Wide Web Conference</i> (pp.
    1109–1110). New York, NY, United States: Association for Computing Machinery.
    <a href="https://doi.org/10.1145/1526709.1526880">https://doi.org/10.1145/1526709.1526880</a>'
  chicago: Baykan, Eda, Monika H Henzinger, Ludmila Marian, and Ingmar Weber. “Purely
    URL-Based Topic Classification.” In <i>18th International World Wide Web Conference</i>,
    1109–10. Association for Computing Machinery, 2009. <a href="https://doi.org/10.1145/1526709.1526880">https://doi.org/10.1145/1526709.1526880</a>.
  ieee: E. Baykan, M. H. Henzinger, L. Marian, and I. Weber, “Purely URL-based topic
    classification,” in <i>18th International World Wide Web Conference</i>, New York,
    NY, United States, 2009, pp. 1109–1110.
  ista: 'Baykan E, Henzinger MH, Marian L, Weber I. 2009. Purely URL-based topic classification.
    18th International World Wide Web Conference. WWW: Conference on World Wide Web,
    1109–1110.'
  mla: Baykan, Eda, et al. “Purely URL-Based Topic Classification.” <i>18th International
    World Wide Web Conference</i>, Association for Computing Machinery, 2009, pp.
    1109–10, doi:<a href="https://doi.org/10.1145/1526709.1526880">10.1145/1526709.1526880</a>.
  short: E. Baykan, M.H. Henzinger, L. Marian, I. Weber, in:, 18th International World
    Wide Web Conference, Association for Computing Machinery, 2009, pp. 1109–1110.
conference:
  end_date: 2009-04-24
  location: New York, NY, United States
  name: 'WWW: Conference on World Wide Web'
  start_date: 2009-04-20
date_created: 2022-08-17T11:49:53Z
date_published: 2009-04-01T00:00:00Z
date_updated: 2023-02-17T14:54:56Z
day: '01'
doi: 10.1145/1526709.1526880
extern: '1'
language:
- iso: eng
month: '04'
oa_version: None
page: 1109-1110
publication: 18th International World Wide Web Conference
publication_identifier:
  isbn:
  - 978-1-60558-487-4
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Purely URL-based topic classification
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2009'
...
---
_id: '11906'
abstract:
- lang: eng
  text: In the origin detection problem an algorithm is given a set S of documents,
    ordered by creation time, and a query document D. It needs to output for every
    consecutive sequence of k alphanumeric terms in D the earliest document in $S$
    in which the sequence appeared (if such a document exists). Algorithms for the
    origin detection problem can, for example, be used to detect the "origin" of text
    segments in D and thus to detect novel content in D. They can also find the document
    from which the author of D has copied the most (or show that D is mostly original.)
    We concentrate on solutions that use only a fixed amount of memory. We propose
    novel algorithms for this problem and evaluate them together with a large number
    of previously published algorithms. Our results show that (1) detecting the origin
    of text segments efficiently can be done with very high accuracy even when the
    space used is less than 1% of the size of the documents in $S$, (2) the precision
    degrades smoothly with the amount of available space, (3) various estimation techniques
    can be used to increase the performance of the algorithms.
article_processing_charge: No
author:
- first_name: Ossama
  full_name: Abdel Hamid, Ossama
  last_name: Abdel Hamid
- first_name: Behshad
  full_name: Behzadi, Behshad
  last_name: Behzadi
- first_name: Stefan
  full_name: Christoph, Stefan
  last_name: Christoph
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
citation:
  ama: 'Abdel Hamid O, Behzadi B, Christoph S, Henzinger MH. Detecting the origin
    of text segments efficiently. In: <i>18th International World Wide Web Conference</i>.
    Association for Computing Machinery; 2009:61-70. doi:<a href="https://doi.org/10.1145/1526709.1526719">10.1145/1526709.1526719</a>'
  apa: 'Abdel Hamid, O., Behzadi, B., Christoph, S., &#38; Henzinger, M. H. (2009).
    Detecting the origin of text segments efficiently. In <i>18th International World
    Wide Web Conference</i> (pp. 61–70). Madrid, Spain: Association for Computing
    Machinery. <a href="https://doi.org/10.1145/1526709.1526719">https://doi.org/10.1145/1526709.1526719</a>'
  chicago: Abdel Hamid, Ossama, Behshad Behzadi, Stefan Christoph, and Monika H Henzinger.
    “Detecting the Origin of Text Segments Efficiently.” In <i>18th International
    World Wide Web Conference</i>, 61–70. Association for Computing Machinery, 2009.
    <a href="https://doi.org/10.1145/1526709.1526719">https://doi.org/10.1145/1526709.1526719</a>.
  ieee: O. Abdel Hamid, B. Behzadi, S. Christoph, and M. H. Henzinger, “Detecting
    the origin of text segments efficiently,” in <i>18th International World Wide
    Web Conference</i>, Madrid, Spain, 2009, pp. 61–70.
  ista: 'Abdel Hamid O, Behzadi B, Christoph S, Henzinger MH. 2009. Detecting the
    origin of text segments efficiently. 18th International World Wide Web Conference.
    WWW: International Conference on World Wide Web, 61–70.'
  mla: Abdel Hamid, Ossama, et al. “Detecting the Origin of Text Segments Efficiently.”
    <i>18th International World Wide Web Conference</i>, Association for Computing
    Machinery, 2009, pp. 61–70, doi:<a href="https://doi.org/10.1145/1526709.1526719">10.1145/1526709.1526719</a>.
  short: O. Abdel Hamid, B. Behzadi, S. Christoph, M.H. Henzinger, in:, 18th International
    World Wide Web Conference, Association for Computing Machinery, 2009, pp. 61–70.
conference:
  end_date: 2009-04-24
  location: Madrid, Spain
  name: 'WWW: International Conference on World Wide Web'
  start_date: 2009-04-20
date_created: 2022-08-17T11:54:30Z
date_published: 2009-04-01T00:00:00Z
date_updated: 2023-02-17T14:56:47Z
day: '01'
doi: 10.1145/1526709.1526719
extern: '1'
language:
- iso: eng
month: '04'
oa_version: None
page: 61-70
publication: 18th International World Wide Web Conference
publication_identifier:
  isbn:
  - 978-160558487-4
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Detecting the origin of text segments efficiently
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2009'
...
---
_id: '11912'
abstract:
- lang: eng
  text: As the World Wide Web is growing rapidly, it is getting increasingly challenging
    to gather representative information about it. Instead of crawling the web exhaustively
    one has to resort to other techniques like sampling to determine the properties
    of the web. A uniform random sample of the web would be useful to determine the
    percentage of web pages in a specific language, on a topic or in a top level domain.
    Unfortunately, no approach has been shown to sample the web pages in an unbiased
    way. Three promising web sampling algorithms are based on random walks. They each
    have been evaluated individually, but making a comparison on different data sets
    is not possible. We directly compare these algorithms in this paper. We performed
    three random walks on the web under the same conditions and analyzed their outcomes
    in detail. We discuss the strengths and the weaknesses of each algorithm and propose
    improvements based on experimental results.
alternative_title:
- LIPIcs
article_processing_charge: No
arxiv: 1
author:
- first_name: ' Eda'
  full_name: Baykan,  Eda
  last_name: Baykan
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Stefan F.
  full_name: Keller, Stefan F.
  last_name: Keller
- first_name: Sebastian
  full_name: de Castelberg, Sebastian
  last_name: de Castelberg
- first_name: Markus
  full_name: Kinzler, Markus
  last_name: Kinzler
citation:
  ama: 'Baykan  Eda, Henzinger MH, Keller SF, de Castelberg S, Kinzler M. A comparison
    of techniques for sampling web pages. In: <i>26th International Symposium on Theoretical
    Aspects of Computer Science</i>. Vol 3. Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik; 2009:13-30. doi:<a href="https://doi.org/10.4230/LIPICS.STACS.2009.1809">10.4230/LIPICS.STACS.2009.1809</a>'
  apa: 'Baykan,  Eda, Henzinger, M. H., Keller, S. F., de Castelberg, S., &#38; Kinzler,
    M. (2009). A comparison of techniques for sampling web pages. In <i>26th International
    Symposium on Theoretical Aspects of Computer Science</i> (Vol. 3, pp. 13–30).
    Freiburg, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPICS.STACS.2009.1809">https://doi.org/10.4230/LIPICS.STACS.2009.1809</a>'
  chicago: Baykan,  Eda, Monika H Henzinger, Stefan F. Keller, Sebastian de Castelberg,
    and Markus Kinzler. “A Comparison of Techniques for Sampling Web Pages.” In <i>26th
    International Symposium on Theoretical Aspects of Computer Science</i>, 3:13–30.
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2009. <a href="https://doi.org/10.4230/LIPICS.STACS.2009.1809">https://doi.org/10.4230/LIPICS.STACS.2009.1809</a>.
  ieee: Eda Baykan, M. H. Henzinger, S. F. Keller, S. de Castelberg, and M. Kinzler,
    “A comparison of techniques for sampling web pages,” in <i>26th International
    Symposium on Theoretical Aspects of Computer Science</i>, Freiburg, Germany, 2009,
    vol. 3, pp. 13–30.
  ista: 'Baykan  Eda, Henzinger MH, Keller SF, de Castelberg S, Kinzler M. 2009. A
    comparison of techniques for sampling web pages. 26th International Symposium
    on Theoretical Aspects of Computer Science. STACS: Symposium on Theoretical Aspects
    of Computer Science, LIPIcs, vol. 3, 13–30.'
  mla: Baykan,  Eda, et al. “A Comparison of Techniques for Sampling Web Pages.” <i>26th
    International Symposium on Theoretical Aspects of Computer Science</i>, vol. 3,
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2009, pp. 13–30, doi:<a href="https://doi.org/10.4230/LIPICS.STACS.2009.1809">10.4230/LIPICS.STACS.2009.1809</a>.
  short: Eda Baykan, M.H. Henzinger, S.F. Keller, S. de Castelberg, M. Kinzler, in:,
    26th International Symposium on Theoretical Aspects of Computer Science, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2009, pp. 13–30.
conference:
  end_date: 2009-02-28
  location: Freiburg, Germany
  name: 'STACS: Symposium on Theoretical Aspects of Computer Science'
  start_date: 2009-02-26
date_created: 2022-08-18T06:57:25Z
date_published: 2009-02-01T00:00:00Z
date_updated: 2023-02-17T08:57:16Z
day: '01'
doi: 10.4230/LIPICS.STACS.2009.1809
extern: '1'
external_id:
  arxiv:
  - '0902.1604'
intvolume: '         3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.4230/LIPIcs.STACS.2009.1809
month: '02'
oa: 1
oa_version: Published Version
page: 13-30
publication: 26th International Symposium on Theoretical Aspects of Computer Science
publication_identifier:
  isbn:
  - 978-3-939897-09-5
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: A comparison of techniques for sampling web pages
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2009'
...
---
_id: '2070'
abstract:
- lang: eng
  text: In many eukaryotic organisms, gender is determined by a pair of heteromorphic
    sex chromosomes. Degeneration of the non-recombining Y chromosome is a general
    facet of sex chromosome evolution. Selective pressure to restore expression levels
    of X-linked genes relative to autosomes accompanies Y-chromosome degeneration,
    thus driving the evolution of dosage compensation mechanisms. This review focuses
    on evolutionary aspects of dosage compensation, in light of recent advances in
    comparative and functional genomics that have substantially increased our understanding
    of the molecular mechanisms of dosage compensation and how it evolved. We review
    processes involved in sex chromosome evolution, and discuss the dynamic interaction
    between Y degeneration and the acquisition of dosage compensation. We compare
    mechanisms of dosage compensation and the origin of dosage compensation genes
    between different taxa and comment on sex chromosomes that apparently lack compensation
    mechanisms. Finally, we discuss how dosage compensation systems can also influence
    the evolution of well-established sex chromosomes.
acknowledgement: This research is funded by NIH Grant GM076007 and a Sloan Research
  Fellowship and a David and Lucile Packard Fellowship to D.B.
author:
- first_name: Beatriz
  full_name: Beatriz Vicoso
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Doris
  full_name: Bachtrog, Doris
  last_name: Bachtrog
citation:
  ama: Vicoso B, Bachtrog D. Progress and prospects toward our understanding of the
    evolution of dosage compensation. <i>Chromosome Research</i>. 2009;17(5):585-602.
    doi:<a href="https://doi.org/10.1007/s10577-009-9053-y">10.1007/s10577-009-9053-y</a>
  apa: Vicoso, B., &#38; Bachtrog, D. (2009). Progress and prospects toward our understanding
    of the evolution of dosage compensation. <i>Chromosome Research</i>. Springer.
    <a href="https://doi.org/10.1007/s10577-009-9053-y">https://doi.org/10.1007/s10577-009-9053-y</a>
  chicago: Vicoso, Beatriz, and Doris Bachtrog. “Progress and Prospects toward Our
    Understanding of the Evolution of Dosage Compensation.” <i>Chromosome Research</i>.
    Springer, 2009. <a href="https://doi.org/10.1007/s10577-009-9053-y">https://doi.org/10.1007/s10577-009-9053-y</a>.
  ieee: B. Vicoso and D. Bachtrog, “Progress and prospects toward our understanding
    of the evolution of dosage compensation,” <i>Chromosome Research</i>, vol. 17,
    no. 5. Springer, pp. 585–602, 2009.
  ista: Vicoso B, Bachtrog D. 2009. Progress and prospects toward our understanding
    of the evolution of dosage compensation. Chromosome Research. 17(5), 585–602.
  mla: Vicoso, Beatriz, and Doris Bachtrog. “Progress and Prospects toward Our Understanding
    of the Evolution of Dosage Compensation.” <i>Chromosome Research</i>, vol. 17,
    no. 5, Springer, 2009, pp. 585–602, doi:<a href="https://doi.org/10.1007/s10577-009-9053-y">10.1007/s10577-009-9053-y</a>.
  short: B. Vicoso, D. Bachtrog, Chromosome Research 17 (2009) 585–602.
date_created: 2018-12-11T11:55:32Z
date_published: 2009-07-01T00:00:00Z
date_updated: 2021-01-12T06:55:07Z
day: '01'
doi: 10.1007/s10577-009-9053-y
extern: 1
intvolume: '        17'
issue: '5'
month: '07'
page: 585 - 602
publication: Chromosome Research
publication_status: published
publisher: Springer
publist_id: '4969'
quality_controlled: 0
status: public
title: Progress and prospects toward our understanding of the evolution of dosage
  compensation
type: journal_article
volume: 17
year: '2009'
...
---
_id: '2094'
abstract:
- lang: eng
  text: 'This paper introduces a data-driven representation and modeling technique
    for simulating non-linear heterogeneous soft tissue. It simplifies the construction
    of convincing deformable models by avoiding complex selection and tuning of physical
    material parameters, yet retaining the richness of non-linear heterogeneous behavior.
    We acquire a set of example deformations of a real object, and represent each
    of them as a spatially varying stress-strain relationship in a finite-element
    model. We then model the material by non-linear interpolation of these stress-strain
    relationships in strain-space. Our method relies on a simple-to-build capture
    system and an efficient run-time simulation algorithm based on incremental loading,
    making it suitable for interactive computer graphics applications. We present
    the results of our approach for several non-linear materials and biological soft
    tissue, with accurate agreement of our model to the measured data. '
acknowledgement: 'This research was supported by the NCCR Co-Me grant of the Swiss
  National Science Foundation. Moritz Bacher was partially supported by the Initiative
  in Innovative Computing (IIC) and the School of Engineering and Applied Sciences
  (SEAS) at Harvard. '
author:
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Moritz
  full_name: Bac̈her, Moritz
  last_name: Bac̈Her
- first_name: Miguel
  full_name: Otaduy, Miguel A
  last_name: Otaduy
- first_name: Wojciech
  full_name: Matusik, Wojciech
  last_name: Matusik
- first_name: Hanspeter
  full_name: Pfister, Hanspeter
  last_name: Pfister
- first_name: Markus
  full_name: Groß, Markus S
  last_name: Groß
citation:
  ama: 'Bickel B, Bac̈Her M, Otaduy M, Matusik W, Pfister H, Groß M. Capture and modeling
    of non-linear heterogeneous soft tissue. In: Vol 28. ACM; 2009. doi:<a href="https://doi.org/10.1145/1576246.1531395
    ">10.1145/1576246.1531395 </a>'
  apa: Bickel, B., Bac̈Her, M., Otaduy, M., Matusik, W., Pfister, H., &#38; Groß,
    M. (2009). Capture and modeling of non-linear heterogeneous soft tissue (Vol.
    28). Presented at the ACM SIGGRAPH, ACM. <a href="https://doi.org/10.1145/1576246.1531395
    ">https://doi.org/10.1145/1576246.1531395 </a>
  chicago: Bickel, Bernd, Moritz Bac̈Her, Miguel Otaduy, Wojciech Matusik, Hanspeter
    Pfister, and Markus Groß. “Capture and Modeling of Non-Linear Heterogeneous Soft
    Tissue,” Vol. 28. ACM, 2009. <a href="https://doi.org/10.1145/1576246.1531395
    ">https://doi.org/10.1145/1576246.1531395 </a>.
  ieee: B. Bickel, M. Bac̈Her, M. Otaduy, W. Matusik, H. Pfister, and M. Groß, “Capture
    and modeling of non-linear heterogeneous soft tissue,” presented at the ACM SIGGRAPH,
    2009, vol. 28, no. 3.
  ista: Bickel B, Bac̈Her M, Otaduy M, Matusik W, Pfister H, Groß M. 2009. Capture
    and modeling of non-linear heterogeneous soft tissue. ACM SIGGRAPH vol. 28.
  mla: Bickel, Bernd, et al. <i>Capture and Modeling of Non-Linear Heterogeneous Soft
    Tissue</i>. Vol. 28, no. 3, ACM, 2009, doi:<a href="https://doi.org/10.1145/1576246.1531395
    ">10.1145/1576246.1531395 </a>.
  short: B. Bickel, M. Bac̈Her, M. Otaduy, W. Matusik, H. Pfister, M. Groß, in:, ACM,
    2009.
conference:
  name: ACM SIGGRAPH
date_created: 2018-12-11T11:55:40Z
date_published: 2009-07-27T00:00:00Z
date_updated: 2019-04-26T07:22:08Z
day: '27'
doi: '10.1145/1576246.1531395 '
extern: 1
intvolume: '        28'
issue: '3'
month: '07'
publication_status: published
publisher: ACM
publist_id: '4940'
quality_controlled: 0
status: public
title: Capture and modeling of non-linear heterogeneous soft tissue
type: conference
volume: 28
year: '2009'
...
---
_id: '2119'
abstract:
- lang: eng
  text: 'Let (E, H, μ) be an abstract Wiener space and let DV : = V D, where D denotes
    the Malliavin derivative and V is a closed and densely defined operator from H
    into another Hilbert space under(H, {combining low line}). Given a bounded operator
    B on under(H, {combining low line}), coercive on the range over(R (V), -), we
    consider the operators A : = V* B V in H and under(A, {combining low line}) :
    = V V* B in under(H, {combining low line}), as well as the realisations of the
    operators L : = DV* B DV and under(L, {combining low line}) : = DV DV* B in Lp
    (E, μ) and Lp (E, μ ; under(H, {combining low line})) respectively, where 1 &lt;
    p &lt; ∞. Our main result asserts that the following four assertions are equivalent:
    (1)D (sqrt(L)) = D (DV) with {norm of matrix} sqrt(L) f {norm of matrix}p {minus
    tilde} {norm of matrix} DV f {norm of matrix}p for f ∈ D (sqrt(L));(2)under(L,
    {combining low line}) admits a bounded H∞-functional calculus on over(R (DV),
    -);(3)D (sqrt(A)) = D (V) with {norm of matrix} sqrt(A) h {norm of matrix} {minus
    tilde} {norm of matrix} V h {norm of matrix} for h ∈ D (sqrt(A));(4)under(A, {combining
    low line}) admits a bounded H∞-functional calculus on over(R (V), -). Moreover,
    if these conditions are satisfied, then D (L) = D (DV2) ∩ D (DA). The equivalence
    (1)-(4) is a non-symmetric generalisation of the classical Meyer inequalities
    of Malliavin calculus (where under(H, {combining low line}) = H, V = I, B = frac(1,
    2) I). A one-sided version of (1)-(4), giving Lp-boundedness of the Riesz transform
    DV / sqrt(L) in terms of a square function estimate, is also obtained. As an application
    let -A generate an analytic C0-contraction semigroup on a Hilbert space H and
    let -L be the Lp-realisation of the generator of its second quantisation. Our
    results imply that two-sided bounds for the Riesz transform of L are equivalent
    with the Kato square root property for A. The boundedness of the Riesz transform
    is used to obtain an Lp-domain characterisation for the operator L.'
author:
- first_name: Jan
  full_name: Jan Maas
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
- first_name: Jan
  full_name: van Neerven, Jan M
  last_name: Van Neerven
citation:
  ama: Maas J, Van Neerven J. Boundedness of Riesz transforms for elliptic operators
    on abstract Wiener spaces. <i>Journal of Functional Analysis</i>. 2009;257(8):2410-2475.
    doi:<a href="https://doi.org/10.1016/j.jfa.2009.07.001">10.1016/j.jfa.2009.07.001</a>
  apa: Maas, J., &#38; Van Neerven, J. (2009). Boundedness of Riesz transforms for
    elliptic operators on abstract Wiener spaces. <i>Journal of Functional Analysis</i>.
    Academic Press. <a href="https://doi.org/10.1016/j.jfa.2009.07.001">https://doi.org/10.1016/j.jfa.2009.07.001</a>
  chicago: Maas, Jan, and Jan Van Neerven. “Boundedness of Riesz Transforms for Elliptic
    Operators on Abstract Wiener Spaces.” <i>Journal of Functional Analysis</i>. Academic
    Press, 2009. <a href="https://doi.org/10.1016/j.jfa.2009.07.001">https://doi.org/10.1016/j.jfa.2009.07.001</a>.
  ieee: J. Maas and J. Van Neerven, “Boundedness of Riesz transforms for elliptic
    operators on abstract Wiener spaces,” <i>Journal of Functional Analysis</i>, vol.
    257, no. 8. Academic Press, pp. 2410–2475, 2009.
  ista: Maas J, Van Neerven J. 2009. Boundedness of Riesz transforms for elliptic
    operators on abstract Wiener spaces. Journal of Functional Analysis. 257(8), 2410–2475.
  mla: Maas, Jan, and Jan Van Neerven. “Boundedness of Riesz Transforms for Elliptic
    Operators on Abstract Wiener Spaces.” <i>Journal of Functional Analysis</i>, vol.
    257, no. 8, Academic Press, 2009, pp. 2410–75, doi:<a href="https://doi.org/10.1016/j.jfa.2009.07.001">10.1016/j.jfa.2009.07.001</a>.
  short: J. Maas, J. Van Neerven, Journal of Functional Analysis 257 (2009) 2410–2475.
date_created: 2018-12-11T11:55:49Z
date_published: 2009-10-15T00:00:00Z
date_updated: 2021-01-12T06:55:25Z
day: '15'
doi: 10.1016/j.jfa.2009.07.001
extern: 1
intvolume: '       257'
issue: '8'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0804.1432
month: '10'
oa: 1
page: 2410 - 2475
publication: Journal of Functional Analysis
publication_status: published
publisher: Academic Press
publist_id: '4913'
quality_controlled: 0
status: public
title: Boundedness of Riesz transforms for elliptic operators on abstract Wiener spaces
type: journal_article
volume: 257
year: '2009'
...
---
_id: '2136'
abstract:
- lang: eng
  text: The local atomic structure of PbTiO3, BaTiO3, and KNbO3 perovskite-type crystals
    and K x Na1 − x NbO3 solid solutions in different phases is investigated using
    the angular dependence of the pre-edge structure of the Ti and Nb K X-ray absorption
    spectra and the EXAFS data. In noncubic phases, a considerable deviation of the
    local structure from the structure determined from diffraction data is observed
    only for the tetragonal phase of the BaTiO3 crystal. It is revealed that, in the
    cubic phase of niobates, the niobium atoms are characterized by significant displacements
    from the centrosymmetric positions along the threefold axes, so that they are
    close in the magnitude and the direction to the displacements in the low-temperatures
    rhombohedral phases.
acknowledgement: This study was supported by the Russian Founda*tion for Basic Research
  (project no. 07*02*00796a).
author:
- first_name: Rostislav
  full_name: Vedrinskiǐ, Rostislav V
  last_name: Vedrinskiǐ
- first_name: V.
  full_name: Kraǐzman, V. L
  last_name: Kraǐzman
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Elena
  full_name: Nazarenko, Elena S
  last_name: Nazarenko
- first_name: Alexander
  full_name: Novakovich, Alexander A
  last_name: Novakovich
- first_name: Larisa
  full_name: Reznichenko, Larisa A
  last_name: Reznichenko
- first_name: Vladimir
  full_name: Fokin, Vladimir N
  last_name: Fokin
- first_name: Victoria
  full_name: Shuvaeva, Victoria A
  last_name: Shuvaeva
citation:
  ama: 'Vedrinskiǐ R, Kraǐzman V, Lemeshko M, et al. Local atomic structure of niobates
    and titanates from X-ray absorption spectroscopic data. In: Vol 51. Springer;
    2009:1394-1398. doi:<a href="https://doi.org/10.1134/S106378340907018X">10.1134/S106378340907018X</a>'
  apa: 'Vedrinskiǐ, R., Kraǐzman, V., Lemeshko, M., Nazarenko, E., Novakovich, A.,
    Reznichenko, L., … Shuvaeva, V. (2009). Local atomic structure of niobates and
    titanates from X-ray absorption spectroscopic data (Vol. 51, pp. 1394–1398). Presented
    at the CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII),
    Springer. <a href="https://doi.org/10.1134/S106378340907018X">https://doi.org/10.1134/S106378340907018X</a>'
  chicago: Vedrinskiǐ, Rostislav, V. Kraǐzman, Mikhail Lemeshko, Elena Nazarenko,
    Alexander Novakovich, Larisa Reznichenko, Vladimir Fokin, and Victoria Shuvaeva.
    “Local Atomic Structure of Niobates and Titanates from X-Ray Absorption Spectroscopic
    Data,” 51:1394–98. Springer, 2009. <a href="https://doi.org/10.1134/S106378340907018X">https://doi.org/10.1134/S106378340907018X</a>.
  ieee: 'R. Vedrinskiǐ <i>et al.</i>, “Local atomic structure of niobates and titanates
    from X-ray absorption spectroscopic data,” presented at the CoPoF: 18th All-Russia
    Conference on Physics of Ferroelectrics (VKS-XVIII), 2009, vol. 51, no. 7, pp.
    1394–1398.'
  ista: 'Vedrinskiǐ R, Kraǐzman V, Lemeshko M, Nazarenko E, Novakovich A, Reznichenko
    L, Fokin V, Shuvaeva V. 2009. Local atomic structure of niobates and titanates
    from X-ray absorption spectroscopic data. CoPoF: 18th All-Russia Conference on
    Physics of Ferroelectrics (VKS-XVIII) vol. 51, 1394–1398.'
  mla: Vedrinskiǐ, Rostislav, et al. <i>Local Atomic Structure of Niobates and Titanates
    from X-Ray Absorption Spectroscopic Data</i>. Vol. 51, no. 7, Springer, 2009,
    pp. 1394–98, doi:<a href="https://doi.org/10.1134/S106378340907018X">10.1134/S106378340907018X</a>.
  short: R. Vedrinskiǐ, V. Kraǐzman, M. Lemeshko, E. Nazarenko, A. Novakovich, L.
    Reznichenko, V. Fokin, V. Shuvaeva, in:, Springer, 2009, pp. 1394–1398.
conference:
  name: 'CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII)'
date_created: 2018-12-11T11:55:55Z
date_published: 2009-07-12T00:00:00Z
date_updated: 2021-01-12T06:55:31Z
day: '12'
doi: 10.1134/S106378340907018X
extern: 1
intvolume: '        51'
issue: '7'
month: '07'
page: 1394 - 1398
publication_status: published
publisher: Springer
publist_id: '4898'
quality_controlled: 0
status: public
title: Local atomic structure of niobates and titanates from X-ray absorption spectroscopic
  data
type: conference
volume: 51
year: '2009'
...
