---
_id: '2067'
acknowledgement: This work was funded by a Portuguese Foundation for Science and Technology
  scholarship to B.V., and B.C. was supported by the Royal Society
author:
- first_name: Beatriz
  full_name: Beatriz Vicoso
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Brian
  full_name: Charlesworth, Brian
  last_name: Charlesworth
citation:
  ama: Vicoso B, Charlesworth B. Recombination rates may affect the ratio of X to
    autosomal noncoding polymorphism in African populations of Drosophila melanogaster.
    <i>Genetics</i>. 2009;181(4):1699-1701. doi:<a href="https://doi.org/10.1534/genetics.108.098004">10.1534/genetics.108.098004</a>
  apa: Vicoso, B., &#38; Charlesworth, B. (2009). Recombination rates may affect the
    ratio of X to autosomal noncoding polymorphism in African populations of Drosophila
    melanogaster. <i>Genetics</i>. Genetics Society of America. <a href="https://doi.org/10.1534/genetics.108.098004">https://doi.org/10.1534/genetics.108.098004</a>
  chicago: Vicoso, Beatriz, and Brian Charlesworth. “Recombination Rates May Affect
    the Ratio of X to Autosomal Noncoding Polymorphism in African Populations of Drosophila
    Melanogaster.” <i>Genetics</i>. Genetics Society of America, 2009. <a href="https://doi.org/10.1534/genetics.108.098004">https://doi.org/10.1534/genetics.108.098004</a>.
  ieee: B. Vicoso and B. Charlesworth, “Recombination rates may affect the ratio of
    X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster,”
    <i>Genetics</i>, vol. 181, no. 4. Genetics Society of America, pp. 1699–1701,
    2009.
  ista: Vicoso B, Charlesworth B. 2009. Recombination rates may affect the ratio of
    X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster.
    Genetics. 181(4), 1699–1701.
  mla: Vicoso, Beatriz, and Brian Charlesworth. “Recombination Rates May Affect the
    Ratio of X to Autosomal Noncoding Polymorphism in African Populations of Drosophila
    Melanogaster.” <i>Genetics</i>, vol. 181, no. 4, Genetics Society of America,
    2009, pp. 1699–701, doi:<a href="https://doi.org/10.1534/genetics.108.098004">10.1534/genetics.108.098004</a>.
  short: B. Vicoso, B. Charlesworth, Genetics 181 (2009) 1699–1701.
date_created: 2018-12-11T11:55:31Z
date_published: 2009-04-01T00:00:00Z
date_updated: 2021-01-12T06:55:06Z
day: '01'
doi: 10.1534/genetics.108.098004
extern: 1
intvolume: '       181'
issue: '4'
month: '04'
page: 1699 - 1701
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '4971'
quality_controlled: 0
status: public
title: Recombination rates may affect the ratio of X to autosomal noncoding polymorphism
  in African populations of Drosophila melanogaster
type: journal_article
volume: 181
year: '2009'
...
---
_id: '2068'
abstract:
- lang: eng
  text: In Drosophila, there is a consistent deficit of male-biased genes on the X
    chromosome. It has been suggested that male-biased genes may evolve from initially
    unbiased genes as a result of increased expression levels in males. If transcription
    rates are limited, a large increase in expression in the testis may be harder
    to achieve for single-copy X-linked genes than for autosomal genes, because they
    are already hypertranscribed due to dosage compensation. This hypothesis predicts
    that the larger the increase in expression required to make a male-biased gene,
    the lower the chance of this being achievable if it is located on the X chromosome.
    Consequently, highly expressed male-biased genes should be located on the X chromosome
    less often than lowly expressed male-biased genes. This pattern is observed in
    our analysis of publicly available data, where microarray data or EST data are
    used to detect male-biased genes in D. melanogaster and to measure their expression
    levels. This is consistent with the idea that limitations in transcription rates
    may prevent male-biased genes from accumulating on the X chromosome.
acknowledgement: This work was funded by a Portuguese Foundation for Science and Technology
  scholarship to B.V., and B.C. was supported by the Royal Society
author:
- first_name: Beatriz
  full_name: Beatriz Vicoso
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Brian
  full_name: Charlesworth, Brian
  last_name: Charlesworth
citation:
  ama: 'Vicoso B, Charlesworth B. The deficit of male-biased genes on the D. melanogaster
    X chromosome is expression-dependent: A consequence of dosage compensation? <i>Journal
    of Molecular Evolution</i>. 2009;68(5):576-583. doi:<a href="https://doi.org/10.1007/s00239-009-9235-4">10.1007/s00239-009-9235-4</a>'
  apa: 'Vicoso, B., &#38; Charlesworth, B. (2009). The deficit of male-biased genes
    on the D. melanogaster X chromosome is expression-dependent: A consequence of
    dosage compensation? <i>Journal of Molecular Evolution</i>. Springer. <a href="https://doi.org/10.1007/s00239-009-9235-4">https://doi.org/10.1007/s00239-009-9235-4</a>'
  chicago: 'Vicoso, Beatriz, and Brian Charlesworth. “The Deficit of Male-Biased Genes
    on the D. Melanogaster X Chromosome Is Expression-Dependent: A Consequence of
    Dosage Compensation?” <i>Journal of Molecular Evolution</i>. Springer, 2009. <a
    href="https://doi.org/10.1007/s00239-009-9235-4">https://doi.org/10.1007/s00239-009-9235-4</a>.'
  ieee: 'B. Vicoso and B. Charlesworth, “The deficit of male-biased genes on the D.
    melanogaster X chromosome is expression-dependent: A consequence of dosage compensation?,”
    <i>Journal of Molecular Evolution</i>, vol. 68, no. 5. Springer, pp. 576–583,
    2009.'
  ista: 'Vicoso B, Charlesworth B. 2009. The deficit of male-biased genes on the D.
    melanogaster X chromosome is expression-dependent: A consequence of dosage compensation?
    Journal of Molecular Evolution. 68(5), 576–583.'
  mla: 'Vicoso, Beatriz, and Brian Charlesworth. “The Deficit of Male-Biased Genes
    on the D. Melanogaster X Chromosome Is Expression-Dependent: A Consequence of
    Dosage Compensation?” <i>Journal of Molecular Evolution</i>, vol. 68, no. 5, Springer,
    2009, pp. 576–83, doi:<a href="https://doi.org/10.1007/s00239-009-9235-4">10.1007/s00239-009-9235-4</a>.'
  short: B. Vicoso, B. Charlesworth, Journal of Molecular Evolution 68 (2009) 576–583.
date_created: 2018-12-11T11:55:31Z
date_published: 2009-05-01T00:00:00Z
date_updated: 2021-01-12T06:55:06Z
day: '01'
doi: 10.1007/s00239-009-9235-4
extern: 1
intvolume: '        68'
issue: '5'
month: '05'
page: 576 - 583
publication: Journal of Molecular Evolution
publication_status: published
publisher: Springer
publist_id: '4970'
quality_controlled: 0
status: public
title: 'The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent:
  A consequence of dosage compensation?'
type: journal_article
volume: 68
year: '2009'
...
---
_id: '2069'
abstract:
- lang: eng
  text: Current models of X-linked and autosomal evolutionary rates often assume that
    the effective population size of the X chromosome (NeX) is equal to three-quarters
    of the autosomal population size (NeA). However, polymorphism studies of Drosophila
    melanogaster and D. simulans suggest that there are often significant deviations
    from this value. We have computed fixation rates of beneficial and deleterious
    mutations at X-linked and autosomal sites when this occurs. We find that NeX/NeA
    is a crucial parameter for the rates of evolution of X-linked sites compared to
    autosomal sites. Faster-X evolution due to the fixation of beneficial mutations
    can occur under a much wider range of levels of dominance when NeX/N eA &gt; 3/4.
    We also examined various parameters that are known to influence the rates of evolution
    at X-linked and autosomal sites, such as different mutation rates in males and
    females and mutations that are sexually antagonistic, to determine which cases
    can lead to faster-X evolution. We show that, when the rate of nonsynonymous evolution
    is normalized by the rate of neutral evolution, a sex difference in mutation rate
    has no influence on the conditions for faster-X evolution.
acknowledgement: This work was funded by a Portuguese Foundation for Science and Technology
  scholarship to BV, and BC was supported by the Royal Society
author:
- first_name: Beatriz
  full_name: Beatriz Vicoso
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Brian
  full_name: Charlesworth, Brian
  last_name: Charlesworth
citation:
  ama: 'Vicoso B, Charlesworth B. Effective population size and the faster-X effect:
    An extended model. <i>Evolution</i>. 2009;63(9):2413-2426. doi:<a href="https://doi.org/10.1111/j.1558-5646.2009.00719.x">10.1111/j.1558-5646.2009.00719.x</a>'
  apa: 'Vicoso, B., &#38; Charlesworth, B. (2009). Effective population size and the
    faster-X effect: An extended model. <i>Evolution</i>. Wiley-Blackwell. <a href="https://doi.org/10.1111/j.1558-5646.2009.00719.x">https://doi.org/10.1111/j.1558-5646.2009.00719.x</a>'
  chicago: 'Vicoso, Beatriz, and Brian Charlesworth. “Effective Population Size and
    the Faster-X Effect: An Extended Model.” <i>Evolution</i>. Wiley-Blackwell, 2009.
    <a href="https://doi.org/10.1111/j.1558-5646.2009.00719.x">https://doi.org/10.1111/j.1558-5646.2009.00719.x</a>.'
  ieee: 'B. Vicoso and B. Charlesworth, “Effective population size and the faster-X
    effect: An extended model,” <i>Evolution</i>, vol. 63, no. 9. Wiley-Blackwell,
    pp. 2413–2426, 2009.'
  ista: 'Vicoso B, Charlesworth B. 2009. Effective population size and the faster-X
    effect: An extended model. Evolution. 63(9), 2413–2426.'
  mla: 'Vicoso, Beatriz, and Brian Charlesworth. “Effective Population Size and the
    Faster-X Effect: An Extended Model.” <i>Evolution</i>, vol. 63, no. 9, Wiley-Blackwell,
    2009, pp. 2413–26, doi:<a href="https://doi.org/10.1111/j.1558-5646.2009.00719.x">10.1111/j.1558-5646.2009.00719.x</a>.'
  short: B. Vicoso, B. Charlesworth, Evolution 63 (2009) 2413–2426.
date_created: 2018-12-11T11:55:32Z
date_published: 2009-09-01T00:00:00Z
date_updated: 2021-01-12T06:55:06Z
day: '01'
doi: 10.1111/j.1558-5646.2009.00719.x
extern: 1
intvolume: '        63'
issue: '9'
month: '09'
page: 2413 - 2426
publication: Evolution
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4968'
quality_controlled: 0
status: public
title: 'Effective population size and the faster-X effect: An extended model'
type: journal_article
volume: 63
year: '2009'
...
---
_id: '13414'
abstract:
- lang: eng
  text: Supraspherical aggregates of crosslinked metal nanoparticles are transformed
    into pancakes and nanorods by mechanical stresses and shears imparted by macroscopic
    objects (see image). The dimensions of both types of nanostructures can be controlled
    by the pressures applied.
article_processing_charge: No
article_type: original
author:
- first_name: Kevin P.
  full_name: Browne, Kevin P.
  last_name: Browne
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: JulieAnn
  full_name: Villa, JulieAnn
  last_name: Villa
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Browne KP, Klajn R, Villa J, Grzybowski BA. Mechanofabrication of pancake and
    rodlike nanostructures from deformable nanoparticle aggregates. <i>Small</i>.
    2009;5(23):2656-2658. doi:<a href="https://doi.org/10.1002/smll.200900902">10.1002/smll.200900902</a>
  apa: Browne, K. P., Klajn, R., Villa, J., &#38; Grzybowski, B. A. (2009). Mechanofabrication
    of pancake and rodlike nanostructures from deformable nanoparticle aggregates.
    <i>Small</i>. Wiley. <a href="https://doi.org/10.1002/smll.200900902">https://doi.org/10.1002/smll.200900902</a>
  chicago: Browne, Kevin P., Rafal Klajn, JulieAnn Villa, and Bartosz A. Grzybowski.
    “Mechanofabrication of Pancake and Rodlike Nanostructures from Deformable Nanoparticle
    Aggregates.” <i>Small</i>. Wiley, 2009. <a href="https://doi.org/10.1002/smll.200900902">https://doi.org/10.1002/smll.200900902</a>.
  ieee: K. P. Browne, R. Klajn, J. Villa, and B. A. Grzybowski, “Mechanofabrication
    of pancake and rodlike nanostructures from deformable nanoparticle aggregates,”
    <i>Small</i>, vol. 5, no. 23. Wiley, pp. 2656–2658, 2009.
  ista: Browne KP, Klajn R, Villa J, Grzybowski BA. 2009. Mechanofabrication of pancake
    and rodlike nanostructures from deformable nanoparticle aggregates. Small. 5(23),
    2656–2658.
  mla: Browne, Kevin P., et al. “Mechanofabrication of Pancake and Rodlike Nanostructures
    from Deformable Nanoparticle Aggregates.” <i>Small</i>, vol. 5, no. 23, Wiley,
    2009, pp. 2656–58, doi:<a href="https://doi.org/10.1002/smll.200900902">10.1002/smll.200900902</a>.
  short: K.P. Browne, R. Klajn, J. Villa, B.A. Grzybowski, Small 5 (2009) 2656–2658.
date_created: 2023-08-01T09:50:12Z
date_published: 2009-12-01T00:00:00Z
date_updated: 2023-08-08T08:49:22Z
day: '01'
doi: 10.1002/smll.200900902
extern: '1'
external_id:
  pmid:
  - '19771567'
intvolume: '         5'
issue: '23'
keyword:
- Biomaterials
- Biotechnology
- General Materials Science
- General Chemistry
language:
- iso: eng
month: '12'
oa_version: None
page: 2656-2658
pmid: 1
publication: Small
publication_identifier:
  eissn:
  - 1613-6829
  issn:
  - 1613-6810
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mechanofabrication of pancake and rodlike nanostructures from deformable nanoparticle
  aggregates
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2009'
...
---
_id: '13415'
abstract:
- lang: eng
  text: Systems in which nanoscale components of different types can be captured and/or
    released from organic scaffolds provide a fertile basis for the construction of
    dynamic, exchangeable functional materials. In such heterogeneous systems, the
    components interact with one another by means of programmable, noncovalent bonding
    interactions. Herein, we describe polymers that capture and release functionalized
    nanoparticles selectively during redox-controlled aggregation and disaggregation,
    respectively. The interactions between the polymer and the NPs are mediated by
    the reversible formation of polypseudorotaxanes, and give rise to architectures
    ranging from short chains composed of few nanoparticles to extended networks of
    nanoparticles crosslinked by the polymer. In the latter case, the polymer/nanoparticle
    aggregates precipitate from solution such that the polymer acts as a selective
    ‘sponge’ for the capture/release of the nanoparticles of different types.
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Mark A.
  full_name: Olson, Mark A.
  last_name: Olson
- first_name: Paul J.
  full_name: Wesson, Paul J.
  last_name: Wesson
- first_name: Lei
  full_name: Fang, Lei
  last_name: Fang
- first_name: Ali
  full_name: Coskun, Ali
  last_name: Coskun
- first_name: Ali
  full_name: Trabolsi, Ali
  last_name: Trabolsi
- first_name: Siowling
  full_name: Soh, Siowling
  last_name: Soh
- first_name: J. Fraser
  full_name: Stoddart, J. Fraser
  last_name: Stoddart
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Klajn R, Olson MA, Wesson PJ, et al. Dynamic hook-and-eye nanoparticle sponges.
    <i>Nature Chemistry</i>. 2009;1:733-738. doi:<a href="https://doi.org/10.1038/nchem.432">10.1038/nchem.432</a>
  apa: Klajn, R., Olson, M. A., Wesson, P. J., Fang, L., Coskun, A., Trabolsi, A.,
    … Grzybowski, B. A. (2009). Dynamic hook-and-eye nanoparticle sponges. <i>Nature
    Chemistry</i>. Springer Nature. <a href="https://doi.org/10.1038/nchem.432">https://doi.org/10.1038/nchem.432</a>
  chicago: Klajn, Rafal, Mark A. Olson, Paul J. Wesson, Lei Fang, Ali Coskun, Ali
    Trabolsi, Siowling Soh, J. Fraser Stoddart, and Bartosz A. Grzybowski. “Dynamic
    Hook-and-Eye Nanoparticle Sponges.” <i>Nature Chemistry</i>. Springer Nature,
    2009. <a href="https://doi.org/10.1038/nchem.432">https://doi.org/10.1038/nchem.432</a>.
  ieee: R. Klajn <i>et al.</i>, “Dynamic hook-and-eye nanoparticle sponges,” <i>Nature
    Chemistry</i>, vol. 1. Springer Nature, pp. 733–738, 2009.
  ista: Klajn R, Olson MA, Wesson PJ, Fang L, Coskun A, Trabolsi A, Soh S, Stoddart
    JF, Grzybowski BA. 2009. Dynamic hook-and-eye nanoparticle sponges. Nature Chemistry.
    1, 733–738.
  mla: Klajn, Rafal, et al. “Dynamic Hook-and-Eye Nanoparticle Sponges.” <i>Nature
    Chemistry</i>, vol. 1, Springer Nature, 2009, pp. 733–38, doi:<a href="https://doi.org/10.1038/nchem.432">10.1038/nchem.432</a>.
  short: R. Klajn, M.A. Olson, P.J. Wesson, L. Fang, A. Coskun, A. Trabolsi, S. Soh,
    J.F. Stoddart, B.A. Grzybowski, Nature Chemistry 1 (2009) 733–738.
date_created: 2023-08-01T09:50:23Z
date_published: 2009-12-01T00:00:00Z
date_updated: 2023-08-08T08:55:36Z
day: '01'
doi: 10.1038/nchem.432
extern: '1'
external_id:
  pmid:
  - '21124361'
intvolume: '         1'
keyword:
- General Chemical Engineering
- General Chemistry
language:
- iso: eng
month: '12'
oa_version: None
page: 733-738
pmid: 1
publication: Nature Chemistry
publication_identifier:
  eissn:
  - 1755-4349
  issn:
  - 1755-4330
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dynamic hook-and-eye nanoparticle sponges
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2009'
...
---
_id: '13416'
abstract:
- lang: eng
  text: The reversible molecular template-directed self-assembly of gold nanoparticles
    (AuNPs), a process which relies solely on noncovalent bonding interactions, has
    been demonstrated by high-resolution transmission electron microscopy (HR-TEM).
    By employing a well-known host−guest binding motif, the AuNPs have been systemized
    into discrete dimers, trimers, and tetramers. These nanoparticulate twins, triplets,
    and quadruplets, which can be disassembled and reassembled either chemically or
    electrochemically, can be coalesced into larger, permanent polygonal structures
    by thermal treatment using a focused HR-TEM electron beam.
article_processing_charge: No
article_type: original
author:
- first_name: Mark A.
  full_name: Olson, Mark A.
  last_name: Olson
- first_name: Ali
  full_name: Coskun, Ali
  last_name: Coskun
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Lei
  full_name: Fang, Lei
  last_name: Fang
- first_name: Sanjeev K.
  full_name: Dey, Sanjeev K.
  last_name: Dey
- first_name: Kevin P.
  full_name: Browne, Kevin P.
  last_name: Browne
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
- first_name: J. Fraser
  full_name: Stoddart, J. Fraser
  last_name: Stoddart
citation:
  ama: Olson MA, Coskun A, Klajn R, et al. Assembly of polygonal nanoparticle clusters
    directed by reversible noncovalent bonding interactions. <i>Nano Letters</i>.
    2009;9(9):3185-3190. doi:<a href="https://doi.org/10.1021/nl901385c">10.1021/nl901385c</a>
  apa: Olson, M. A., Coskun, A., Klajn, R., Fang, L., Dey, S. K., Browne, K. P., …
    Stoddart, J. F. (2009). Assembly of polygonal nanoparticle clusters directed by
    reversible noncovalent bonding interactions. <i>Nano Letters</i>. American Chemical
    Society. <a href="https://doi.org/10.1021/nl901385c">https://doi.org/10.1021/nl901385c</a>
  chicago: Olson, Mark A., Ali Coskun, Rafal Klajn, Lei Fang, Sanjeev K. Dey, Kevin
    P. Browne, Bartosz A. Grzybowski, and J. Fraser Stoddart. “Assembly of Polygonal
    Nanoparticle Clusters Directed by Reversible Noncovalent Bonding Interactions.”
    <i>Nano Letters</i>. American Chemical Society, 2009. <a href="https://doi.org/10.1021/nl901385c">https://doi.org/10.1021/nl901385c</a>.
  ieee: M. A. Olson <i>et al.</i>, “Assembly of polygonal nanoparticle clusters directed
    by reversible noncovalent bonding interactions,” <i>Nano Letters</i>, vol. 9,
    no. 9. American Chemical Society, pp. 3185–3190, 2009.
  ista: Olson MA, Coskun A, Klajn R, Fang L, Dey SK, Browne KP, Grzybowski BA, Stoddart
    JF. 2009. Assembly of polygonal nanoparticle clusters directed by reversible noncovalent
    bonding interactions. Nano Letters. 9(9), 3185–3190.
  mla: Olson, Mark A., et al. “Assembly of Polygonal Nanoparticle Clusters Directed
    by Reversible Noncovalent Bonding Interactions.” <i>Nano Letters</i>, vol. 9,
    no. 9, American Chemical Society, 2009, pp. 3185–90, doi:<a href="https://doi.org/10.1021/nl901385c">10.1021/nl901385c</a>.
  short: M.A. Olson, A. Coskun, R. Klajn, L. Fang, S.K. Dey, K.P. Browne, B.A. Grzybowski,
    J.F. Stoddart, Nano Letters 9 (2009) 3185–3190.
date_created: 2023-08-01T10:29:27Z
date_published: 2009-09-09T00:00:00Z
date_updated: 2023-08-08T08:57:34Z
day: '09'
doi: 10.1021/nl901385c
extern: '1'
external_id:
  pmid:
  - '19694461'
intvolume: '         9'
issue: '9'
keyword:
- Mechanical Engineering
- Condensed Matter Physics
- General Materials Science
- General Chemistry
- Bioengineering
language:
- iso: eng
month: '09'
oa_version: None
page: 3185-3190
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
  issn:
  - 1530-6984
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Assembly of polygonal nanoparticle clusters directed by reversible noncovalent
  bonding interactions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2009'
...
---
_id: '13417'
abstract:
- lang: eng
  text: 'Mission Impossible: Metal nanoparticles (NPs) coated with photoresponsive
    ligands are used as “inks” for self-erasing “paper” whereby light-induced self-assembly
    of the NPs is transduced into local color changes (see picture). Depending on
    the degree of self-assembly, multicolor images can be written using only one type
    of NP ink. Duration of image erasure is regulated by the surface concentration
    of photoactive groups and can range from seconds to days.'
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Paul J.
  full_name: Wesson, Paul J.
  last_name: Wesson
- first_name: Kyle J. M.
  full_name: Bishop, Kyle J. M.
  last_name: Bishop
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Klajn R, Wesson PJ, Bishop KJM, Grzybowski BA. Writing self-erasing images
    using metastable nanoparticle “inks.” <i>Angewandte Chemie International Edition</i>.
    2009;48(38):7035-7039. doi:<a href="https://doi.org/10.1002/anie.200901119">10.1002/anie.200901119</a>
  apa: Klajn, R., Wesson, P. J., Bishop, K. J. M., &#38; Grzybowski, B. A. (2009).
    Writing self-erasing images using metastable nanoparticle “inks.” <i>Angewandte
    Chemie International Edition</i>. Wiley. <a href="https://doi.org/10.1002/anie.200901119">https://doi.org/10.1002/anie.200901119</a>
  chicago: Klajn, Rafal, Paul J. Wesson, Kyle J. M. Bishop, and Bartosz A. Grzybowski.
    “Writing Self-Erasing Images Using Metastable Nanoparticle ‘Inks.’” <i>Angewandte
    Chemie International Edition</i>. Wiley, 2009. <a href="https://doi.org/10.1002/anie.200901119">https://doi.org/10.1002/anie.200901119</a>.
  ieee: R. Klajn, P. J. Wesson, K. J. M. Bishop, and B. A. Grzybowski, “Writing self-erasing
    images using metastable nanoparticle ‘inks,’” <i>Angewandte Chemie International
    Edition</i>, vol. 48, no. 38. Wiley, pp. 7035–7039, 2009.
  ista: Klajn R, Wesson PJ, Bishop KJM, Grzybowski BA. 2009. Writing self-erasing
    images using metastable nanoparticle “inks”. Angewandte Chemie International Edition.
    48(38), 7035–7039.
  mla: Klajn, Rafal, et al. “Writing Self-Erasing Images Using Metastable Nanoparticle
    ‘Inks.’” <i>Angewandte Chemie International Edition</i>, vol. 48, no. 38, Wiley,
    2009, pp. 7035–39, doi:<a href="https://doi.org/10.1002/anie.200901119">10.1002/anie.200901119</a>.
  short: R. Klajn, P.J. Wesson, K.J.M. Bishop, B.A. Grzybowski, Angewandte Chemie
    International Edition 48 (2009) 7035–7039.
date_created: 2023-08-01T10:29:38Z
date_published: 2009-09-01T00:00:00Z
date_updated: 2023-08-08T08:59:15Z
day: '01'
doi: 10.1002/anie.200901119
extern: '1'
external_id:
  pmid:
  - '19533698'
intvolume: '        48'
issue: '38'
keyword:
- General Chemistry
- Catalysis
language:
- iso: eng
month: '09'
oa_version: None
page: 7035-7039
pmid: 1
publication: Angewandte Chemie International Edition
publication_identifier:
  eissn:
  - 1521-3773
  issn:
  - 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Writing self-erasing images using metastable nanoparticle “inks”
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 48
year: '2009'
...
---
_id: '13418'
abstract:
- lang: eng
  text: In traditional photoconductors1,2,3, the impinging light generates mobile
    charge carriers in the valence and/or conduction bands, causing the material’s
    conductivity to increase4. Such positive photoconductance is observed in both
    bulk and nanostructured5,6 photoconductors. Here we describe a class of nanoparticle-based
    materials whose conductivity can either increase or decrease on irradiation with
    visible light of wavelengths close to the particles’ surface plasmon resonance.
    The remarkable feature of these plasmonic materials is that the sign of the conductivity
    change and the nature of the electron transport between the nanoparticles depend
    on the molecules comprising the self-assembled monolayers (SAMs)7,8 stabilizing
    the nanoparticles. For SAMs made of electrically neutral (polar and non-polar)
    molecules, conductivity increases on irradiation. If, however, the SAMs contain
    electrically charged (either negatively or positively) groups, conductivity decreases.
    The optical and electrical characteristics of these previously undescribed inverse
    photoconductors can be engineered flexibly by adjusting the material properties
    of the nanoparticles and of the coating SAMs. In particular, in films comprising
    mixtures of different nanoparticles or nanoparticles coated with mixed SAMs, the
    overall photoconductance is a weighted average of the changes induced by the individual
    components. These and other observations can be rationalized in terms of light-induced
    creation of mobile charge carriers whose transport through the charged SAMs is
    inhibited by carrier trapping in transient polaron-like states9,10. The nanoparticle-based
    photoconductors we describe could have uses in chemical sensors and/or in conjunction
    with flexible substrates.
article_processing_charge: No
article_type: original
author:
- first_name: Hideyuki
  full_name: Nakanishi, Hideyuki
  last_name: Nakanishi
- first_name: Kyle J. M.
  full_name: Bishop, Kyle J. M.
  last_name: Bishop
- first_name: Bartlomiej
  full_name: Kowalczyk, Bartlomiej
  last_name: Kowalczyk
- first_name: Abraham
  full_name: Nitzan, Abraham
  last_name: Nitzan
- first_name: Emily A.
  full_name: Weiss, Emily A.
  last_name: Weiss
- first_name: Konstantin V.
  full_name: Tretiakov, Konstantin V.
  last_name: Tretiakov
- first_name: Mario M.
  full_name: Apodaca, Mario M.
  last_name: Apodaca
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: J. Fraser
  full_name: Stoddart, J. Fraser
  last_name: Stoddart
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Nakanishi H, Bishop KJM, Kowalczyk B, et al. Photoconductance and inverse photoconductance
    in films of functionalized metal nanoparticles. <i>Nature</i>. 2009;460(7253):371-375.
    doi:<a href="https://doi.org/10.1038/nature08131">10.1038/nature08131</a>
  apa: Nakanishi, H., Bishop, K. J. M., Kowalczyk, B., Nitzan, A., Weiss, E. A., Tretiakov,
    K. V., … Grzybowski, B. A. (2009). Photoconductance and inverse photoconductance
    in films of functionalized metal nanoparticles. <i>Nature</i>. Springer Nature.
    <a href="https://doi.org/10.1038/nature08131">https://doi.org/10.1038/nature08131</a>
  chicago: Nakanishi, Hideyuki, Kyle J. M. Bishop, Bartlomiej Kowalczyk, Abraham Nitzan,
    Emily A. Weiss, Konstantin V. Tretiakov, Mario M. Apodaca, Rafal Klajn, J. Fraser
    Stoddart, and Bartosz A. Grzybowski. “Photoconductance and Inverse Photoconductance
    in Films of Functionalized Metal Nanoparticles.” <i>Nature</i>. Springer Nature,
    2009. <a href="https://doi.org/10.1038/nature08131">https://doi.org/10.1038/nature08131</a>.
  ieee: H. Nakanishi <i>et al.</i>, “Photoconductance and inverse photoconductance
    in films of functionalized metal nanoparticles,” <i>Nature</i>, vol. 460, no.
    7253. Springer Nature, pp. 371–375, 2009.
  ista: Nakanishi H, Bishop KJM, Kowalczyk B, Nitzan A, Weiss EA, Tretiakov KV, Apodaca
    MM, Klajn R, Stoddart JF, Grzybowski BA. 2009. Photoconductance and inverse photoconductance
    in films of functionalized metal nanoparticles. Nature. 460(7253), 371–375.
  mla: Nakanishi, Hideyuki, et al. “Photoconductance and Inverse Photoconductance
    in Films of Functionalized Metal Nanoparticles.” <i>Nature</i>, vol. 460, no.
    7253, Springer Nature, 2009, pp. 371–75, doi:<a href="https://doi.org/10.1038/nature08131">10.1038/nature08131</a>.
  short: H. Nakanishi, K.J.M. Bishop, B. Kowalczyk, A. Nitzan, E.A. Weiss, K.V. Tretiakov,
    M.M. Apodaca, R. Klajn, J.F. Stoddart, B.A. Grzybowski, Nature 460 (2009) 371–375.
date_created: 2023-08-01T10:29:50Z
date_published: 2009-07-16T00:00:00Z
date_updated: 2023-08-08T09:00:59Z
day: '16'
doi: 10.1038/nature08131
extern: '1'
external_id:
  pmid:
  - '19606145'
intvolume: '       460'
issue: '7253'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '07'
oa_version: None
page: 371-375
pmid: 1
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Photoconductance and inverse photoconductance in films of functionalized metal
  nanoparticles
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 460
year: '2009'
...
---
_id: '13419'
abstract:
- lang: eng
  text: Reaction-diffusion (RD) processes initiated from the surfaces of mesoscopic
    particles can fabricate complex core-and-shell structures. The propagation of
    a sharp RD front selectively removes metal colloids or nanoparticles from the
    supporting gel or polymer matrix. Once fabricated, the core structures can be
    processed “remotely” via galvanic replacement reactions, and the composite particles
    can be assembled into open-lattice crystals.
article_processing_charge: No
article_type: original
author:
- first_name: Paul J.
  full_name: Wesson, Paul J.
  last_name: Wesson
- first_name: Siowling
  full_name: Soh, Siowling
  last_name: Soh
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Kyle J. M.
  full_name: Bishop, Kyle J. M.
  last_name: Bishop
- first_name: Timothy P.
  full_name: Gray, Timothy P.
  last_name: Gray
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: 'Wesson PJ, Soh S, Klajn R, Bishop KJM, Gray TP, Grzybowski BA. “Remote” fabrication
    via three-dimensional reaction-diffusion: Making complex core-and-shell particles
    and assembling them into open-lattice crystals. <i>Advanced Materials</i>. 2009;21(19):1911-1915.
    doi:<a href="https://doi.org/10.1002/adma.200802964">10.1002/adma.200802964</a>'
  apa: 'Wesson, P. J., Soh, S., Klajn, R., Bishop, K. J. M., Gray, T. P., &#38; Grzybowski,
    B. A. (2009). “Remote” fabrication via three-dimensional reaction-diffusion: Making
    complex core-and-shell particles and assembling them into open-lattice crystals.
    <i>Advanced Materials</i>. Wiley. <a href="https://doi.org/10.1002/adma.200802964">https://doi.org/10.1002/adma.200802964</a>'
  chicago: 'Wesson, Paul J., Siowling Soh, Rafal Klajn, Kyle J. M. Bishop, Timothy
    P. Gray, and Bartosz A. Grzybowski. “‘Remote’ Fabrication via Three-Dimensional
    Reaction-Diffusion: Making Complex Core-and-Shell Particles and Assembling Them
    into Open-Lattice Crystals.” <i>Advanced Materials</i>. Wiley, 2009. <a href="https://doi.org/10.1002/adma.200802964">https://doi.org/10.1002/adma.200802964</a>.'
  ieee: 'P. J. Wesson, S. Soh, R. Klajn, K. J. M. Bishop, T. P. Gray, and B. A. Grzybowski,
    “‘Remote’ fabrication via three-dimensional reaction-diffusion: Making complex
    core-and-shell particles and assembling them into open-lattice crystals,” <i>Advanced
    Materials</i>, vol. 21, no. 19. Wiley, pp. 1911–1915, 2009.'
  ista: 'Wesson PJ, Soh S, Klajn R, Bishop KJM, Gray TP, Grzybowski BA. 2009. “Remote”
    fabrication via three-dimensional reaction-diffusion: Making complex core-and-shell
    particles and assembling them into open-lattice crystals. Advanced Materials.
    21(19), 1911–1915.'
  mla: 'Wesson, Paul J., et al. “‘Remote’ Fabrication via Three-Dimensional Reaction-Diffusion:
    Making Complex Core-and-Shell Particles and Assembling Them into Open-Lattice
    Crystals.” <i>Advanced Materials</i>, vol. 21, no. 19, Wiley, 2009, pp. 1911–15,
    doi:<a href="https://doi.org/10.1002/adma.200802964">10.1002/adma.200802964</a>.'
  short: P.J. Wesson, S. Soh, R. Klajn, K.J.M. Bishop, T.P. Gray, B.A. Grzybowski,
    Advanced Materials 21 (2009) 1911–1915.
date_created: 2023-08-01T10:30:04Z
date_published: 2009-05-18T00:00:00Z
date_updated: 2023-08-08T09:04:07Z
day: '18'
doi: 10.1002/adma.200802964
extern: '1'
intvolume: '        21'
issue: '19'
keyword:
- Mechanical Engineering
- Mechanics of Materials
- General Materials Science
language:
- iso: eng
month: '05'
oa_version: None
page: 1911-1915
publication: Advanced Materials
publication_identifier:
  eissn:
  - 1521-4095
  issn:
  - 0935-9648
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: '“Remote” fabrication via three-dimensional reaction-diffusion: Making complex
  core-and-shell particles and assembling them into open-lattice crystals'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2009'
...
---
_id: '13420'
abstract:
- lang: eng
  text: Weakly protected metal nanoparticles (MNPs) are used as precursors for the
    preparation of catenane- and pseudorotaxane-decorated NPs of various compositions
    (gold, palladium, platinum). When attached to the surface of MNPs, the molecular
    switches retain their switching abilities. The redox potentials of these switches
    depend on and can be regulated by the composition of the mixed self-assembled
    monolayers covering the MNPs.
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Lei
  full_name: Fang, Lei
  last_name: Fang
- first_name: Ali
  full_name: Coskun, Ali
  last_name: Coskun
- first_name: Mark A.
  full_name: Olson, Mark A.
  last_name: Olson
- first_name: Paul J.
  full_name: Wesson, Paul J.
  last_name: Wesson
- first_name: J. Fraser
  full_name: Stoddart, J. Fraser
  last_name: Stoddart
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Klajn R, Fang L, Coskun A, et al. Metal nanoparticles functionalized with molecular
    and supramolecular switches. <i>Journal of the American Chemical Society</i>.
    2009;131(12):4233-4235. doi:<a href="https://doi.org/10.1021/ja9001585">10.1021/ja9001585</a>
  apa: Klajn, R., Fang, L., Coskun, A., Olson, M. A., Wesson, P. J., Stoddart, J.
    F., &#38; Grzybowski, B. A. (2009). Metal nanoparticles functionalized with molecular
    and supramolecular switches. <i>Journal of the American Chemical Society</i>.
    American Chemical Society. <a href="https://doi.org/10.1021/ja9001585">https://doi.org/10.1021/ja9001585</a>
  chicago: Klajn, Rafal, Lei Fang, Ali Coskun, Mark A. Olson, Paul J. Wesson, J. Fraser
    Stoddart, and Bartosz A. Grzybowski. “Metal Nanoparticles Functionalized with
    Molecular and Supramolecular Switches.” <i>Journal of the American Chemical Society</i>.
    American Chemical Society, 2009. <a href="https://doi.org/10.1021/ja9001585">https://doi.org/10.1021/ja9001585</a>.
  ieee: R. Klajn <i>et al.</i>, “Metal nanoparticles functionalized with molecular
    and supramolecular switches,” <i>Journal of the American Chemical Society</i>,
    vol. 131, no. 12. American Chemical Society, pp. 4233–4235, 2009.
  ista: Klajn R, Fang L, Coskun A, Olson MA, Wesson PJ, Stoddart JF, Grzybowski BA.
    2009. Metal nanoparticles functionalized with molecular and supramolecular switches.
    Journal of the American Chemical Society. 131(12), 4233–4235.
  mla: Klajn, Rafal, et al. “Metal Nanoparticles Functionalized with Molecular and
    Supramolecular Switches.” <i>Journal of the American Chemical Society</i>, vol.
    131, no. 12, American Chemical Society, 2009, pp. 4233–35, doi:<a href="https://doi.org/10.1021/ja9001585">10.1021/ja9001585</a>.
  short: R. Klajn, L. Fang, A. Coskun, M.A. Olson, P.J. Wesson, J.F. Stoddart, B.A.
    Grzybowski, Journal of the American Chemical Society 131 (2009) 4233–4235.
date_created: 2023-08-01T10:30:17Z
date_published: 2009-04-01T00:00:00Z
date_updated: 2023-08-08T09:06:00Z
day: '01'
doi: 10.1021/ja9001585
extern: '1'
external_id:
  pmid:
  - '19265400'
intvolume: '       131'
issue: '12'
keyword:
- Colloid and Surface Chemistry
- Biochemistry
- General Chemistry
- Catalysis
language:
- iso: eng
month: '04'
oa_version: None
page: 4233-4235
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
  eissn:
  - 1520-5126
  issn:
  - 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Metal nanoparticles functionalized with molecular and supramolecular switches
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 131
year: '2009'
...
---
_id: '13421'
abstract:
- lang: eng
  text: Side-chain poly[2]catenanes at the click of a switch! A bistable side-chain
    poly[2]catenane has been synthesized and found to form hierarchical self-assembled
    hollow superstructures of nanoscale dimensions in solution. Molecular electromechanical
    switching (see picture) of the material is demonstrated, and the ground-state
    equilibrium thermodynamics and switching kinetics are examined as the initial
    steps towards processible molecular-based electronic devices and nanoelectromechanical
    systems.
article_processing_charge: No
article_type: original
author:
- first_name: Mark A.
  full_name: Olson, Mark A.
  last_name: Olson
- first_name: Adam B.
  full_name: Braunschweig, Adam B.
  last_name: Braunschweig
- first_name: Lei
  full_name: Fang, Lei
  last_name: Fang
- first_name: Taichi
  full_name: Ikeda, Taichi
  last_name: Ikeda
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Ali
  full_name: Trabolsi, Ali
  last_name: Trabolsi
- first_name: Paul J.
  full_name: Wesson, Paul J.
  last_name: Wesson
- first_name: Diego
  full_name: Benítez, Diego
  last_name: Benítez
- first_name: Chad A.
  full_name: Mirkin, Chad A.
  last_name: Mirkin
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
- first_name: J. Fraser
  full_name: Stoddart, J. Fraser
  last_name: Stoddart
citation:
  ama: Olson MA, Braunschweig AB, Fang L, et al. A bistable poly[2]catenane forms
    nanosuperstructures. <i>Angewandte Chemie International Edition</i>. 2009;48(10):1792-1797.
    doi:<a href="https://doi.org/10.1002/anie.200804558">10.1002/anie.200804558</a>
  apa: Olson, M. A., Braunschweig, A. B., Fang, L., Ikeda, T., Klajn, R., Trabolsi,
    A., … Stoddart, J. F. (2009). A bistable poly[2]catenane forms nanosuperstructures.
    <i>Angewandte Chemie International Edition</i>. Wiley. <a href="https://doi.org/10.1002/anie.200804558">https://doi.org/10.1002/anie.200804558</a>
  chicago: Olson, Mark A., Adam B. Braunschweig, Lei Fang, Taichi Ikeda, Rafal Klajn,
    Ali Trabolsi, Paul J. Wesson, et al. “A Bistable Poly[2]Catenane Forms Nanosuperstructures.”
    <i>Angewandte Chemie International Edition</i>. Wiley, 2009. <a href="https://doi.org/10.1002/anie.200804558">https://doi.org/10.1002/anie.200804558</a>.
  ieee: M. A. Olson <i>et al.</i>, “A bistable poly[2]catenane forms nanosuperstructures,”
    <i>Angewandte Chemie International Edition</i>, vol. 48, no. 10. Wiley, pp. 1792–1797,
    2009.
  ista: Olson MA, Braunschweig AB, Fang L, Ikeda T, Klajn R, Trabolsi A, Wesson PJ,
    Benítez D, Mirkin CA, Grzybowski BA, Stoddart JF. 2009. A bistable poly[2]catenane
    forms nanosuperstructures. Angewandte Chemie International Edition. 48(10), 1792–1797.
  mla: Olson, Mark A., et al. “A Bistable Poly[2]Catenane Forms Nanosuperstructures.”
    <i>Angewandte Chemie International Edition</i>, vol. 48, no. 10, Wiley, 2009,
    pp. 1792–97, doi:<a href="https://doi.org/10.1002/anie.200804558">10.1002/anie.200804558</a>.
  short: M.A. Olson, A.B. Braunschweig, L. Fang, T. Ikeda, R. Klajn, A. Trabolsi,
    P.J. Wesson, D. Benítez, C.A. Mirkin, B.A. Grzybowski, J.F. Stoddart, Angewandte
    Chemie International Edition 48 (2009) 1792–1797.
date_created: 2023-08-01T10:30:30Z
date_published: 2009-02-23T00:00:00Z
date_updated: 2023-08-08T11:12:29Z
day: '23'
doi: 10.1002/anie.200804558
extern: '1'
external_id:
  pmid:
  - '19180620'
intvolume: '        48'
issue: '10'
keyword:
- General Chemistry
- Catalysis
language:
- iso: eng
month: '02'
oa_version: None
page: 1792-1797
pmid: 1
publication: Angewandte Chemie International Edition
publication_identifier:
  eissn:
  - 1521-3773
  issn:
  - 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: A bistable poly[2]catenane forms nanosuperstructures
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 48
year: '2009'
...
---
_id: '5392'
abstract:
- lang: eng
  text: We consider probabilistic automata on infinite words with acceptance defined
    by safety, reachability, Büchi, coBüchi and limit-average conditions. We consider
    quantitative and qualitative decision problems. We present extensions and adaptations
    of proofs of [GO09] and present a precise characterization of the decidability
    and undecidability frontier of the quantitative and qualitative decision problems.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
citation:
  ama: 'Chatterjee K. <i>Probabilistic Automata on Infinite Words: Decidability and
    Undecidability Results</i>. IST Austria; 2009. doi:<a href="https://doi.org/10.15479/AT:IST-2009-0004">10.15479/AT:IST-2009-0004</a>'
  apa: 'Chatterjee, K. (2009). <i>Probabilistic automata on infinite words: Decidability
    and undecidability results</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2009-0004">https://doi.org/10.15479/AT:IST-2009-0004</a>'
  chicago: 'Chatterjee, Krishnendu. <i>Probabilistic Automata on Infinite Words: Decidability
    and Undecidability Results</i>. IST Austria, 2009. <a href="https://doi.org/10.15479/AT:IST-2009-0004">https://doi.org/10.15479/AT:IST-2009-0004</a>.'
  ieee: 'K. Chatterjee, <i>Probabilistic automata on infinite words: Decidability
    and undecidability results</i>. IST Austria, 2009.'
  ista: 'Chatterjee K. 2009. Probabilistic automata on infinite words: Decidability
    and undecidability results, IST Austria, 17p.'
  mla: 'Chatterjee, Krishnendu. <i>Probabilistic Automata on Infinite Words: Decidability
    and Undecidability Results</i>. IST Austria, 2009, doi:<a href="https://doi.org/10.15479/AT:IST-2009-0004">10.15479/AT:IST-2009-0004</a>.'
  short: 'K. Chatterjee, Probabilistic Automata on Infinite Words: Decidability and
    Undecidability Results, IST Austria, 2009.'
date_created: 2018-12-12T11:39:04Z
date_published: 2009-11-02T00:00:00Z
date_updated: 2023-02-23T11:45:44Z
day: '02'
ddc:
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2009-0004
file:
- access_level: open_access
  checksum: fb7563150231325b00b1718d956f687b
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:08Z
  date_updated: 2020-07-14T12:46:43Z
  file_id: '5530'
  file_name: IST-2009-0004_IST-2009-0004.pdf
  file_size: 311065
  relation: main_file
file_date_updated: 2020-07-14T12:46:43Z
has_accepted_license: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: '17'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '28'
related_material:
  record:
  - id: '3857'
    relation: later_version
    status: public
status: public
title: 'Probabilistic automata on infinite words: Decidability and undecidability
  results'
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2009'
...
---
_id: '5393'
abstract:
- lang: eng
  text: Gist is a tool that (a) solves the qualitative analysis problem of turn-based
    probabilistic games with ω-regular objectives; and (b) synthesizes reasonable
    environment assumptions for synthesis of unrealizable specifications. Our tool
    provides efficient implementations of several reduction based techniques to solve
    turn-based probabilistic games, and uses the analysis of turn-based probabilistic
    games for synthesizing environment assumptions for unrealizable specifications.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Barbara
  full_name: Jobstmann, Barbara
  last_name: Jobstmann
- first_name: Arjun
  full_name: Radhakrishna, Arjun
  id: 3B51CAC4-F248-11E8-B48F-1D18A9856A87
  last_name: Radhakrishna
citation:
  ama: 'Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. <i>Gist: A Solver
    for Probabilistic Games</i>. IST Austria; 2009. doi:<a href="https://doi.org/10.15479/AT:IST-2009-0003">10.15479/AT:IST-2009-0003</a>'
  apa: 'Chatterjee, K., Henzinger, T. A., Jobstmann, B., &#38; Radhakrishna, A. (2009).
    <i>Gist: A solver for probabilistic games</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2009-0003">https://doi.org/10.15479/AT:IST-2009-0003</a>'
  chicago: 'Chatterjee, Krishnendu, Thomas A Henzinger, Barbara Jobstmann, and Arjun
    Radhakrishna. <i>Gist: A Solver for Probabilistic Games</i>. IST Austria, 2009.
    <a href="https://doi.org/10.15479/AT:IST-2009-0003">https://doi.org/10.15479/AT:IST-2009-0003</a>.'
  ieee: 'K. Chatterjee, T. A. Henzinger, B. Jobstmann, and A. Radhakrishna, <i>Gist:
    A solver for probabilistic games</i>. IST Austria, 2009.'
  ista: 'Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. 2009. Gist: A solver
    for probabilistic games, IST Austria, 12p.'
  mla: 'Chatterjee, Krishnendu, et al. <i>Gist: A Solver for Probabilistic Games</i>.
    IST Austria, 2009, doi:<a href="https://doi.org/10.15479/AT:IST-2009-0003">10.15479/AT:IST-2009-0003</a>.'
  short: 'K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, Gist: A Solver
    for Probabilistic Games, IST Austria, 2009.'
date_created: 2018-12-12T11:39:05Z
date_published: 2009-10-09T00:00:00Z
date_updated: 2023-02-23T12:09:01Z
day: '09'
ddc:
- '000'
- '005'
department:
- _id: KrCh
- _id: ToHe
doi: 10.15479/AT:IST-2009-0003
file:
- access_level: open_access
  checksum: 49551ac552915b17593a14c993845274
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:52:58Z
  date_updated: 2020-07-14T12:46:43Z
  file_id: '5459'
  file_name: IST-2009-0003_IST-2009-0003.pdf
  file_size: 386866
  relation: main_file
file_date_updated: 2020-07-14T12:46:43Z
has_accepted_license: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: '12'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '29'
related_material:
  record:
  - id: '4388'
    relation: later_version
    status: public
status: public
title: 'Gist: A solver for probabilistic games'
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2009'
...
---
_id: '5394'
abstract:
- lang: eng
  text: We consider two-player games played on graphs with request-response and finitary
    Streett objectives. We show these games are PSPACE-hard, improving the previous
    known NP-hardness. We also improve the lower bounds on memory required by the
    winning strategies for the players.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Florian
  full_name: Horn, Florian
  id: 37327ACE-F248-11E8-B48F-1D18A9856A87
  last_name: Horn
citation:
  ama: Chatterjee K, Henzinger TA, Horn F. <i>Improved Lower Bounds for Request-Response
    and Finitary Streett Games</i>. IST Austria; 2009. doi:<a href="https://doi.org/10.15479/AT:IST-2009-0002">10.15479/AT:IST-2009-0002</a>
  apa: Chatterjee, K., Henzinger, T. A., &#38; Horn, F. (2009). <i>Improved lower
    bounds for request-response and finitary Streett games</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2009-0002">https://doi.org/10.15479/AT:IST-2009-0002</a>
  chicago: Chatterjee, Krishnendu, Thomas A Henzinger, and Florian Horn. <i>Improved
    Lower Bounds for Request-Response and Finitary Streett Games</i>. IST Austria,
    2009. <a href="https://doi.org/10.15479/AT:IST-2009-0002">https://doi.org/10.15479/AT:IST-2009-0002</a>.
  ieee: K. Chatterjee, T. A. Henzinger, and F. Horn, <i>Improved lower bounds for
    request-response and finitary Streett games</i>. IST Austria, 2009.
  ista: Chatterjee K, Henzinger TA, Horn F. 2009. Improved lower bounds for request-response
    and finitary Streett games, IST Austria, 11p.
  mla: Chatterjee, Krishnendu, et al. <i>Improved Lower Bounds for Request-Response
    and Finitary Streett Games</i>. IST Austria, 2009, doi:<a href="https://doi.org/10.15479/AT:IST-2009-0002">10.15479/AT:IST-2009-0002</a>.
  short: K. Chatterjee, T.A. Henzinger, F. Horn, Improved Lower Bounds for Request-Response
    and Finitary Streett Games, IST Austria, 2009.
date_created: 2018-12-12T11:39:05Z
date_published: 2009-09-09T00:00:00Z
date_updated: 2020-07-14T23:07:47Z
day: '09'
ddc:
- '004'
department:
- _id: KrCh
- _id: ToHe
doi: 10.15479/AT:IST-2009-0002
file:
- access_level: open_access
  checksum: 1c50a9723fbae1b2c46d18138968efb3
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:50Z
  date_updated: 2020-07-14T12:46:43Z
  file_id: '5511'
  file_name: IST-2009-0002_IST-2009-0002.pdf
  file_size: 238091
  relation: main_file
file_date_updated: 2020-07-14T12:46:43Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '11'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '30'
status: public
title: Improved lower bounds for request-response and finitary Streett games
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2009'
...
---
_id: '5395'
abstract:
- lang: eng
  text: 'We study observation-based strategies for partially-observable Markov decision
    processes (POMDPs) with omega-regular objectives. An observation-based strategy
    relies on partial information about the history of a play, namely, on the past
    sequence of observa- tions. We consider the qualitative analysis problem: given
    a POMDP with an omega-regular objective, whether there is an observation-based
    strategy to achieve the objective with probability 1 (almost-sure winning), or
    with positive probability (positive winning). Our main results are twofold. First,
    we present a complete picture of the computational complexity of the qualitative
    analysis of POMDPs with parity objectives (a canonical form to express omega-regular
    objectives) and its subclasses. Our contribution consists in establishing several
    upper and lower bounds that were not known in literature. Second, we present optimal
    bounds (matching upper and lower bounds) on the memory required by pure and randomized
    observation-based strategies for the qualitative analysis of POMDPs with parity
    objectives and its subclasses.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
citation:
  ama: Chatterjee K, Doyen L, Henzinger TA. <i>Qualitative Analysis of Partially-Observable
    Markov Decision Processes</i>. IST Austria; 2009. doi:<a href="https://doi.org/10.15479/AT:IST-2009-0001">10.15479/AT:IST-2009-0001</a>
  apa: Chatterjee, K., Doyen, L., &#38; Henzinger, T. A. (2009). <i>Qualitative analysis
    of partially-observable Markov decision processes</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2009-0001">https://doi.org/10.15479/AT:IST-2009-0001</a>
  chicago: Chatterjee, Krishnendu, Laurent Doyen, and Thomas A Henzinger. <i>Qualitative
    Analysis of Partially-Observable Markov Decision Processes</i>. IST Austria, 2009.
    <a href="https://doi.org/10.15479/AT:IST-2009-0001">https://doi.org/10.15479/AT:IST-2009-0001</a>.
  ieee: K. Chatterjee, L. Doyen, and T. A. Henzinger, <i>Qualitative analysis of partially-observable
    Markov decision processes</i>. IST Austria, 2009.
  ista: Chatterjee K, Doyen L, Henzinger TA. 2009. Qualitative analysis of partially-observable
    Markov decision processes, IST Austria, 20p.
  mla: Chatterjee, Krishnendu, et al. <i>Qualitative Analysis of Partially-Observable
    Markov Decision Processes</i>. IST Austria, 2009, doi:<a href="https://doi.org/10.15479/AT:IST-2009-0001">10.15479/AT:IST-2009-0001</a>.
  short: K. Chatterjee, L. Doyen, T.A. Henzinger, Qualitative Analysis of Partially-Observable
    Markov Decision Processes, IST Austria, 2009.
date_created: 2018-12-12T11:39:05Z
date_published: 2009-09-09T00:00:00Z
date_updated: 2023-02-23T11:45:39Z
day: '09'
ddc:
- '005'
department:
- _id: KrCh
- _id: ToHe
doi: 10.15479/AT:IST-2009-0001
file:
- access_level: open_access
  checksum: 04d9cc065cc19598a4e8631c47f1a562
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:25Z
  date_updated: 2020-07-14T12:46:43Z
  file_id: '5486'
  file_name: IST-2009-0001_IST-2009-0001.pdf
  file_size: 342088
  relation: main_file
file_date_updated: 2020-07-14T12:46:43Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '20'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '31'
related_material:
  record:
  - id: '3855'
    relation: later_version
    status: public
status: public
title: Qualitative analysis of partially-observable Markov decision processes
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2009'
...
---
_id: '599'
abstract:
- lang: eng
  text: The human CDK8 subcomplex (CDK8, cyclin C, Med12, and Med13) negatively regulates
    transcription in ways not completely defined; past studies suggested CDK8 kinase
    activity was required for its repressive function. Using a reconstituted transcription
    system together with recombinant or endogenous CDK8 subcomplexes, we demonstrate
    that, in fact, Med12 and Med13 are critical for subcomplex-dependent repression,
    whereas CDK8 kinase activity is not. A hallmark of activated transcription is
    efficient reinitiation from promoter-bound scaffold complexes that recruit a series
    of pol II enzymes to the gene. Notably, the CDK8 submodule strongly represses
    even reinitiation events, suggesting a means to fine tune transcript levels. Structural
    and biochemical studies confirm the CDK8 submodule binds the Mediator leg/tail
    domain via the Med13 subunit, and this submodule-Mediator association precludes
    pol II recruitment. Collectively, these results reveal the CDK8 subcomplex functions
    as a simple switch that controls the Mediator-pol II interaction to help regulate
    transcription initiation and reinitiation events. As Mediator is generally required
    for expression of protein-coding genes, this may reflect a common mechanism by
    which activated transcription is shut down in human cells.
article_processing_charge: No
author:
- first_name: Matthew
  full_name: Knuesel, Matthew
  last_name: Knuesel
- first_name: Krista
  full_name: Meyer, Krista
  last_name: Meyer
- first_name: Carrie A
  full_name: Bernecky, Carrie A
  id: 2CB9DFE2-F248-11E8-B48F-1D18A9856A87
  last_name: Bernecky
  orcid: 0000-0003-0893-7036
- first_name: Dylan
  full_name: Taatjes, Dylan
  last_name: Taatjes
citation:
  ama: Knuesel M, Meyer K, Bernecky C, Taatjes D. The human CDK8 subcomplex is a molecular
    switch that controls Mediator coactivator function. <i>Genes and Development</i>.
    2009;23(4):439-451. doi:<a href="https://doi.org/10.1101/gad.1767009">10.1101/gad.1767009</a>
  apa: Knuesel, M., Meyer, K., Bernecky, C., &#38; Taatjes, D. (2009). The human CDK8
    subcomplex is a molecular switch that controls Mediator coactivator function.
    <i>Genes and Development</i>. Cold Spring Harbor Laboratory Press. <a href="https://doi.org/10.1101/gad.1767009">https://doi.org/10.1101/gad.1767009</a>
  chicago: Knuesel, Matthew, Krista Meyer, Carrie Bernecky, and Dylan Taatjes. “The
    Human CDK8 Subcomplex Is a Molecular Switch That Controls Mediator Coactivator
    Function.” <i>Genes and Development</i>. Cold Spring Harbor Laboratory Press,
    2009. <a href="https://doi.org/10.1101/gad.1767009">https://doi.org/10.1101/gad.1767009</a>.
  ieee: M. Knuesel, K. Meyer, C. Bernecky, and D. Taatjes, “The human CDK8 subcomplex
    is a molecular switch that controls Mediator coactivator function,” <i>Genes and
    Development</i>, vol. 23, no. 4. Cold Spring Harbor Laboratory Press, pp. 439–451,
    2009.
  ista: Knuesel M, Meyer K, Bernecky C, Taatjes D. 2009. The human CDK8 subcomplex
    is a molecular switch that controls Mediator coactivator function. Genes and Development.
    23(4), 439–451.
  mla: Knuesel, Matthew, et al. “The Human CDK8 Subcomplex Is a Molecular Switch That
    Controls Mediator Coactivator Function.” <i>Genes and Development</i>, vol. 23,
    no. 4, Cold Spring Harbor Laboratory Press, 2009, pp. 439–51, doi:<a href="https://doi.org/10.1101/gad.1767009">10.1101/gad.1767009</a>.
  short: M. Knuesel, K. Meyer, C. Bernecky, D. Taatjes, Genes and Development 23 (2009)
    439–451.
date_created: 2018-12-11T11:47:25Z
date_published: 2009-02-15T00:00:00Z
date_updated: 2021-01-12T08:05:32Z
day: '15'
doi: 10.1101/gad.1767009
extern: '1'
intvolume: '        23'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2648653/
month: '02'
oa: 1
oa_version: None
page: 439 - 451
publication: Genes and Development
publication_status: published
publisher: Cold Spring Harbor Laboratory Press
publist_id: '7211'
status: public
title: The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator
  function
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2009'
...
---
_id: '6144'
abstract:
- lang: eng
  text: Behaviours evolve by iterations of natural selection, but we have few insights
    into the molecular and neural mechanisms involved. Here we show that some Caenorhabditis
    elegans wild strains switch between two foraging behaviours in response to subtle
    changes in ambient oxygen. This finely tuned switch is conferred by a naturally
    variable hexacoordinated globin, GLB-5. GLB-5 acts with the atypical soluble guanylate
    cyclases1,2,3, which are a different type of oxygen binding protein, to tune the
    dynamic range of oxygen-sensing neurons close to atmospheric (21%) concentrations.
    Calcium imaging indicates that one group of these neurons is activated when oxygen
    rises towards 21%, and is inhibited as oxygen drops below 21%. The soluble guanylate
    cyclase GCY-35 is required for high oxygen to activate the neurons; GLB-5 provides
    inhibitory input when oxygen decreases below 21%. Together, these oxygen binding
    proteins tune neuronal and behavioural responses to a narrow oxygen concentration
    range close to atmospheric levels. The effect of the glb-5 gene on oxygen sensing
    and foraging is modified by the naturally variable neuropeptide receptor npr-1
    (refs 4, 5), providing insights into how polygenic variation reshapes neural circuit
    function.
author:
- first_name: Annelie
  full_name: Persson, Annelie
  last_name: Persson
- first_name: Einav
  full_name: Gross, Einav
  last_name: Gross
- first_name: Patrick
  full_name: Laurent, Patrick
  last_name: Laurent
- first_name: Karl Emanuel
  full_name: Busch, Karl Emanuel
  last_name: Busch
- first_name: Hugo
  full_name: Bretes, Hugo
  last_name: Bretes
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Persson A, Gross E, Laurent P, Busch KE, Bretes H, de Bono M. Natural variation
    in a neural globin tunes oxygen sensing in wild Caenorhabditis elegans. <i>Nature</i>.
    2009;458(7241):1030-1033. doi:<a href="https://doi.org/10.1038/nature07820">10.1038/nature07820</a>
  apa: Persson, A., Gross, E., Laurent, P., Busch, K. E., Bretes, H., &#38; de Bono,
    M. (2009). Natural variation in a neural globin tunes oxygen sensing in wild Caenorhabditis
    elegans. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/nature07820">https://doi.org/10.1038/nature07820</a>
  chicago: Persson, Annelie, Einav Gross, Patrick Laurent, Karl Emanuel Busch, Hugo
    Bretes, and Mario de Bono. “Natural Variation in a Neural Globin Tunes Oxygen
    Sensing in Wild Caenorhabditis Elegans.” <i>Nature</i>. Springer Nature, 2009.
    <a href="https://doi.org/10.1038/nature07820">https://doi.org/10.1038/nature07820</a>.
  ieee: A. Persson, E. Gross, P. Laurent, K. E. Busch, H. Bretes, and M. de Bono,
    “Natural variation in a neural globin tunes oxygen sensing in wild Caenorhabditis
    elegans,” <i>Nature</i>, vol. 458, no. 7241. Springer Nature, pp. 1030–1033, 2009.
  ista: Persson A, Gross E, Laurent P, Busch KE, Bretes H, de Bono M. 2009. Natural
    variation in a neural globin tunes oxygen sensing in wild Caenorhabditis elegans.
    Nature. 458(7241), 1030–1033.
  mla: Persson, Annelie, et al. “Natural Variation in a Neural Globin Tunes Oxygen
    Sensing in Wild Caenorhabditis Elegans.” <i>Nature</i>, vol. 458, no. 7241, Springer
    Nature, 2009, pp. 1030–33, doi:<a href="https://doi.org/10.1038/nature07820">10.1038/nature07820</a>.
  short: A. Persson, E. Gross, P. Laurent, K.E. Busch, H. Bretes, M. de Bono, Nature
    458 (2009) 1030–1033.
date_created: 2019-03-21T07:48:44Z
date_published: 2009-04-23T00:00:00Z
date_updated: 2021-01-12T08:06:20Z
day: '23'
doi: 10.1038/nature07820
extern: '1'
external_id:
  pmid:
  - '19262507'
intvolume: '       458'
issue: '7241'
language:
- iso: eng
month: '04'
oa_version: None
page: 1030-1033
pmid: 1
publication: Nature
publication_identifier:
  issn:
  - 0028-0836
  - 1476-4687
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Natural variation in a neural globin tunes oxygen sensing in wild Caenorhabditis
  elegans
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 458
year: '2009'
...
---
_id: '6145'
author:
- first_name: Merav
  full_name: Cohen, Merav
  last_name: Cohen
- first_name: Vincenzina
  full_name: Reale, Vincenzina
  last_name: Reale
- first_name: Birgitta
  full_name: Olofsson, Birgitta
  last_name: Olofsson
- first_name: Andrew
  full_name: Knights, Andrew
  last_name: Knights
- first_name: Peter
  full_name: Evans, Peter
  last_name: Evans
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Cohen M, Reale V, Olofsson B, Knights A, Evans P, de Bono M. Coordinated regulation
    of foraging and metabolism in C. elegans by RFamide neuropeptide signaling. <i>Cell
    Metabolism</i>. 2009;9(4):375-385. doi:<a href="https://doi.org/10.1016/j.cmet.2009.02.003">10.1016/j.cmet.2009.02.003</a>
  apa: Cohen, M., Reale, V., Olofsson, B., Knights, A., Evans, P., &#38; de Bono,
    M. (2009). Coordinated regulation of foraging and metabolism in C. elegans by
    RFamide neuropeptide signaling. <i>Cell Metabolism</i>. Elsevier. <a href="https://doi.org/10.1016/j.cmet.2009.02.003">https://doi.org/10.1016/j.cmet.2009.02.003</a>
  chicago: Cohen, Merav, Vincenzina Reale, Birgitta Olofsson, Andrew Knights, Peter
    Evans, and Mario de Bono. “Coordinated Regulation of Foraging and Metabolism in
    C. Elegans by RFamide Neuropeptide Signaling.” <i>Cell Metabolism</i>. Elsevier,
    2009. <a href="https://doi.org/10.1016/j.cmet.2009.02.003">https://doi.org/10.1016/j.cmet.2009.02.003</a>.
  ieee: M. Cohen, V. Reale, B. Olofsson, A. Knights, P. Evans, and M. de Bono, “Coordinated
    regulation of foraging and metabolism in C. elegans by RFamide neuropeptide signaling,”
    <i>Cell Metabolism</i>, vol. 9, no. 4. Elsevier, pp. 375–385, 2009.
  ista: Cohen M, Reale V, Olofsson B, Knights A, Evans P, de Bono M. 2009. Coordinated
    regulation of foraging and metabolism in C. elegans by RFamide neuropeptide signaling.
    Cell Metabolism. 9(4), 375–385.
  mla: Cohen, Merav, et al. “Coordinated Regulation of Foraging and Metabolism in
    C. Elegans by RFamide Neuropeptide Signaling.” <i>Cell Metabolism</i>, vol. 9,
    no. 4, Elsevier, 2009, pp. 375–85, doi:<a href="https://doi.org/10.1016/j.cmet.2009.02.003">10.1016/j.cmet.2009.02.003</a>.
  short: M. Cohen, V. Reale, B. Olofsson, A. Knights, P. Evans, M. de Bono, Cell Metabolism
    9 (2009) 375–385.
date_created: 2019-03-21T07:57:52Z
date_published: 2009-04-08T00:00:00Z
date_updated: 2021-01-12T08:06:20Z
day: '08'
doi: 10.1016/j.cmet.2009.02.003
extern: '1'
external_id:
  pmid:
  - '19356718'
intvolume: '         9'
issue: '4'
language:
- iso: eng
month: '04'
oa_version: None
page: 375-385
pmid: 1
publication: Cell Metabolism
publication_identifier:
  issn:
  - 1550-4131
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Coordinated regulation of foraging and metabolism in C. elegans by RFamide
  neuropeptide signaling
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2009'
...
---
_id: '1038'
abstract:
- lang: eng
  text: One possible way to produce ultra-cold, high-phase-space-density quantum gases
    of molecules in the rovibronic ground state is given by molecule association from
    quantum-degenerate atomic gases on a Feshbach resonance and subsequent coherent
    optical multi-photon transfer into the rovibronic ground state. In ultra-cold
    samples of Cs2 molecules, we observe two-photon dark resonances that connect the
    intermediate rovibrational level |v=73,J=2 with the rovibrational ground state
    |v=0,J=0 of the singlet X 1 ∑ g + ground-state potential. For precise dark resonance
    spectroscopy we exploit the fact that it is possible to efficiently populate the
    level |v=73,J=2 by two-photon transfer from the dissociation threshold with the
    stimulated Raman adiabatic passage (STIRAP) technique. We find that at least one
    of the two-photon resonances is sufficiently strong to allow future implementation
    of coherent STIRAP transfer of a molecular quantum gas to the rovibrational ground
    state |v=0,J=0.
acknowledgement: "We are indebted to R. Grimm for generous support and we thank E.
  Tiemann for valuable discussions and C. Amiot for providing the FTS data of LAC
  on Cs2. We gratefully acknowledge funding by the Austrian Ministry of Science and
  Research (BMWF)\r\nand the Austrian Science Fund (FWF) in the form of a START prize
  grant and by the European Science Foundation (ESF) in the framework of the EuroQUAM
  collective research project QuDipMol. R.H. acknowledges support by the European
  Union in the form of a Marie Curie International Incoming Fellowship (IIF). The
  work at Stony Brook was supported by the US NSF, under grant PHY0652459."
article_processing_charge: No
arxiv: 1
author:
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Mattias
  full_name: Gustavsson, Mattias
  last_name: Gustavsson
- first_name: Nadia
  full_name: Bouloufa, Nadia
  last_name: Bouloufa
- first_name: Olivier
  full_name: Dulieu, Olivier
  last_name: Dulieu
- first_name: Houssam
  full_name: Salami, Houssam
  last_name: Salami
- first_name: Thomas
  full_name: Bergeman, Thomas
  last_name: Bergeman
- first_name: Helmut
  full_name: Ritsch, Helmut
  last_name: Ritsch
- first_name: Russell
  full_name: Hart, Russell
  last_name: Hart
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
citation:
  ama: 'Mark M, Danzl JG, Haller E, et al. Dark resonances for ground-state transfer
    of molecular quantum gases. <i>Applied Physics B: Lasers and Optics</i>. 2009;95(2):219-225.
    doi:<a href="https://doi.org/10.1007/s00340-009-3407-1">10.1007/s00340-009-3407-1</a>'
  apa: 'Mark, M., Danzl, J. G., Haller, E., Gustavsson, M., Bouloufa, N., Dulieu,
    O., … Nägerl, H. (2009). Dark resonances for ground-state transfer of molecular
    quantum gases. <i>Applied Physics B: Lasers and Optics</i>. Springer. <a href="https://doi.org/10.1007/s00340-009-3407-1">https://doi.org/10.1007/s00340-009-3407-1</a>'
  chicago: 'Mark, Manfred, Johann G Danzl, Elmar Haller, Mattias Gustavsson, Nadia
    Bouloufa, Olivier Dulieu, Houssam Salami, et al. “Dark Resonances for Ground-State
    Transfer of Molecular Quantum Gases.” <i>Applied Physics B: Lasers and Optics</i>.
    Springer, 2009. <a href="https://doi.org/10.1007/s00340-009-3407-1">https://doi.org/10.1007/s00340-009-3407-1</a>.'
  ieee: 'M. Mark <i>et al.</i>, “Dark resonances for ground-state transfer of molecular
    quantum gases,” <i>Applied Physics B: Lasers and Optics</i>, vol. 95, no. 2. Springer,
    pp. 219–225, 2009.'
  ista: 'Mark M, Danzl JG, Haller E, Gustavsson M, Bouloufa N, Dulieu O, Salami H,
    Bergeman T, Ritsch H, Hart R, Nägerl H. 2009. Dark resonances for ground-state
    transfer of molecular quantum gases. Applied Physics B: Lasers and Optics. 95(2),
    219–225.'
  mla: 'Mark, Manfred, et al. “Dark Resonances for Ground-State Transfer of Molecular
    Quantum Gases.” <i>Applied Physics B: Lasers and Optics</i>, vol. 95, no. 2, Springer,
    2009, pp. 219–25, doi:<a href="https://doi.org/10.1007/s00340-009-3407-1">10.1007/s00340-009-3407-1</a>.'
  short: 'M. Mark, J.G. Danzl, E. Haller, M. Gustavsson, N. Bouloufa, O. Dulieu, H.
    Salami, T. Bergeman, H. Ritsch, R. Hart, H. Nägerl, Applied Physics B: Lasers
    and Optics 95 (2009) 219–225.'
date_created: 2018-12-11T11:49:49Z
date_published: 2009-05-01T00:00:00Z
date_updated: 2021-01-12T06:47:50Z
day: '01'
doi: 10.1007/s00340-009-3407-1
extern: '1'
external_id:
  arxiv:
  - '0811.0695'
intvolume: '        95'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/0811.0695
month: '05'
oa: 1
oa_version: None
page: 219 - 225
publication: 'Applied Physics B: Lasers and Optics'
publication_status: published
publisher: Springer
publist_id: '6350'
status: public
title: Dark resonances for ground-state transfer of molecular quantum gases
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 95
year: '2009'
...
---
_id: '1040'
abstract:
- lang: eng
  text: Ultracold atomic physics offers myriad possibilities to study strongly correlated
    many-body systems in lower dimensions. Typically, only ground-state phases are
    accessible. Using a tunable quantum gas of bosonic cesium atoms, we realized and
    controlled in one-dimensional geometry a highly excited quantum phase that is
    stabilized in the presence of attractive interactions by maintaining and strengthening
    quantum correlations across a confinement-induced resonance. We diagnosed the
    crossover from repulsive to attractive interactions in terms of the stiffness
    and energy of the system. Our results open up the experimental study of metastable,
    excited, many-body phases with strong correlations and their dynamical properties.
acknowledgement: We thank S. Giorgini and C. Menotti for helpful discussions and for
  providing the theory curves shown in Fig. 3A. We are indebted to R. Grimm for generous
  support and to H. Häffner and his group for the loan of a charge-coupled device
  camera. We gratefully acknowledge funding by the Austrian Ministry of Science and
  Research (Bundesministerium für Wissenschaft und Forschung) and the Austrian Science
  Fund (Fonds zur Förderung der wissenschaftlichen Forschung) in the form of a START
  prize grant and by the European Union through the Specific Targeted Research Project
  FP7-ICT-2007-C project NAME-QUAM (Nanodesigning of Atomic and Molecular Quantum
  Matter) and within the framework of the EuroQUASAR collective research project Quantum-Degenerate
  Gases for Precision Measurements. R.H. is supported by a Marie Curie International
  Incoming Fellowship within the 7th European Community Framework Programme.
article_processing_charge: No
arxiv: 1
author:
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Mattias
  full_name: Gustavsson, Mattias
  last_name: Gustavsson
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Russell
  full_name: Hart, Russell
  last_name: Hart
- first_name: Guido
  full_name: Pupillo, Guido
  last_name: Pupillo
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
citation:
  ama: Haller E, Gustavsson M, Mark M, et al. Realization of an excited, strongly
    correlated quantum gas Phase. <i>Science</i>. 2009;325(5945):1224-1227. doi:<a
    href="https://doi.org/10.1126/science.1175850">10.1126/science.1175850</a>
  apa: Haller, E., Gustavsson, M., Mark, M., Danzl, J. G., Hart, R., Pupillo, G.,
    &#38; Nägerl, H. (2009). Realization of an excited, strongly correlated quantum
    gas Phase. <i>Science</i>. American Association for the Advancement of Science.
    <a href="https://doi.org/10.1126/science.1175850">https://doi.org/10.1126/science.1175850</a>
  chicago: Haller, Elmar, Mattias Gustavsson, Manfred Mark, Johann G Danzl, Russell
    Hart, Guido Pupillo, and Hanns Nägerl. “Realization of an Excited, Strongly Correlated
    Quantum Gas Phase.” <i>Science</i>. American Association for the Advancement of
    Science, 2009. <a href="https://doi.org/10.1126/science.1175850">https://doi.org/10.1126/science.1175850</a>.
  ieee: E. Haller <i>et al.</i>, “Realization of an excited, strongly correlated quantum
    gas Phase,” <i>Science</i>, vol. 325, no. 5945. American Association for the Advancement
    of Science, pp. 1224–1227, 2009.
  ista: Haller E, Gustavsson M, Mark M, Danzl JG, Hart R, Pupillo G, Nägerl H. 2009.
    Realization of an excited, strongly correlated quantum gas Phase. Science. 325(5945),
    1224–1227.
  mla: Haller, Elmar, et al. “Realization of an Excited, Strongly Correlated Quantum
    Gas Phase.” <i>Science</i>, vol. 325, no. 5945, American Association for the Advancement
    of Science, 2009, pp. 1224–27, doi:<a href="https://doi.org/10.1126/science.1175850">10.1126/science.1175850</a>.
  short: E. Haller, M. Gustavsson, M. Mark, J.G. Danzl, R. Hart, G. Pupillo, H. Nägerl,
    Science 325 (2009) 1224–1227.
date_created: 2018-12-11T11:49:50Z
date_published: 2009-01-01T00:00:00Z
date_updated: 2021-01-12T06:47:51Z
day: '01'
doi: 10.1126/science.1175850
extern: '1'
external_id:
  arxiv:
  - '1006.0739'
intvolume: '       325'
issue: '5945'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1006.0739
month: '01'
oa: 1
oa_version: None
page: 1224 - 1227
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '6348'
status: public
title: Realization of an excited, strongly correlated quantum gas Phase
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 325
year: '2009'
...
