---
_id: '1768'
abstract:
- lang: eng
  text: Quantum state tomography is an important tool in quantum information science
    for complete characterization of multiqubit states and their correlations. Here
    we report a method to perform a joint simultaneous readout of two superconducting
    qubits dispersively coupled to the same mode of a microwave transmission line
    resonator. The nonlinear dependence of the resonator transmission on the qubit
    state dependent cavity frequency allows us to extract the full two-qubit correlations
    without the need for single-shot readout of individual qubits. We employ standard
    tomographic techniques to reconstruct the density matrix of two-qubit quantum
    states.
acknowledgement: This work was supported by Swiss National Science Foundation (SNF)
  and ETH Zurich. P. J. L. was supported by the EC with a MC-EIF, J. M. G. by CIFAR,
  MRI, MITACS, and NSERC, and A. B. by NSERC and CIFAR
author:
- first_name: Stefan
  full_name: Filipp, Stefan
  last_name: Filipp
- first_name: Patrick
  full_name: Maurer, Patrick
  last_name: Maurer
- first_name: Peter
  full_name: Leek, Peter J
  last_name: Leek
- first_name: Matthias
  full_name: Baur, Matthias P
  last_name: Baur
- first_name: R
  full_name: Bianchetti, R
  last_name: Bianchetti
- first_name: Johannes M
  full_name: Johannes Fink
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: M
  full_name: Göppl, M
  last_name: Göppl
- first_name: L.
  full_name: Steffen, L. Kraig
  last_name: Steffen
- first_name: Jay
  full_name: Gambetta, Jay M
  last_name: Gambetta
- first_name: Alexandre
  full_name: Blais, Alexandre
  last_name: Blais
- first_name: Andreas
  full_name: Wallraff, Andreas
  last_name: Wallraff
citation:
  ama: Filipp S, Maurer P, Leek P, et al. Two-qubit state tomography using a joint
    dispersive readout. <i>Physical Review Letters</i>. 2009;102(20). doi:<a href="https://doi.org/10.1103/PhysRevLett.102.200402">10.1103/PhysRevLett.102.200402</a>
  apa: Filipp, S., Maurer, P., Leek, P., Baur, M., Bianchetti, R., Fink, J. M., …
    Wallraff, A. (2009). Two-qubit state tomography using a joint dispersive readout.
    <i>Physical Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.102.200402">https://doi.org/10.1103/PhysRevLett.102.200402</a>
  chicago: Filipp, Stefan, Patrick Maurer, Peter Leek, Matthias Baur, R Bianchetti,
    Johannes M Fink, M Göppl, et al. “Two-Qubit State Tomography Using a Joint Dispersive
    Readout.” <i>Physical Review Letters</i>. American Physical Society, 2009. <a
    href="https://doi.org/10.1103/PhysRevLett.102.200402">https://doi.org/10.1103/PhysRevLett.102.200402</a>.
  ieee: S. Filipp <i>et al.</i>, “Two-qubit state tomography using a joint dispersive
    readout,” <i>Physical Review Letters</i>, vol. 102, no. 20. American Physical
    Society, 2009.
  ista: Filipp S, Maurer P, Leek P, Baur M, Bianchetti R, Fink JM, Göppl M, Steffen
    L, Gambetta J, Blais A, Wallraff A. 2009. Two-qubit state tomography using a joint
    dispersive readout. Physical Review Letters. 102(20).
  mla: Filipp, Stefan, et al. “Two-Qubit State Tomography Using a Joint Dispersive
    Readout.” <i>Physical Review Letters</i>, vol. 102, no. 20, American Physical
    Society, 2009, doi:<a href="https://doi.org/10.1103/PhysRevLett.102.200402">10.1103/PhysRevLett.102.200402</a>.
  short: S. Filipp, P. Maurer, P. Leek, M. Baur, R. Bianchetti, J.M. Fink, M. Göppl,
    L. Steffen, J. Gambetta, A. Blais, A. Wallraff, Physical Review Letters 102 (2009).
date_created: 2018-12-11T11:53:54Z
date_published: 2009-05-18T00:00:00Z
date_updated: 2021-01-12T06:53:04Z
day: '18'
doi: 10.1103/PhysRevLett.102.200402
extern: 1
intvolume: '       102'
issue: '20'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0812.2485
month: '05'
oa: 1
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '5353'
quality_controlled: 0
status: public
title: Two-qubit state tomography using a joint dispersive readout
type: journal_article
volume: 102
year: '2009'
...
---
_id: '1769'
abstract:
- lang: eng
  text: We present an ideal realization of the Tavis-Cummings model in the absence
    of atom number and coupling fluctuations by embedding a discrete number of fully
    controllable superconducting qubits at fixed positions into a transmission line
    resonator. Measuring the vacuum Rabi mode splitting with one, two, and three qubits
    strongly coupled to the cavity field, we explore both bright and dark dressed
    collective multiqubit states and observe the discrete N scaling of the collective
    dipole coupling strength. Our experiments demonstrate a novel approach to explore
    collective states, such as the W state, in a fully globally and locally controllable
    quantum system. Our scalable approach is interesting for solid-state quantum information
    processing and for fundamental multiatom quantum optics experiments with fixed
    atom numbers.
acknowledgement: This work was supported by SNF Grant No. 200021-111899 and ETHZ.
  P. J. L. was supported by the EU with a MC-EIF. A. B. was supported by NSERC, CIFAR,
  and the Alfred P. Sloan Foundation
author:
- first_name: Johannes M
  full_name: Johannes Fink
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: R
  full_name: Bianchetti, R
  last_name: Bianchetti
- first_name: Matthias
  full_name: Baur, Matthias P
  last_name: Baur
- first_name: M
  full_name: Göppl, M
  last_name: Göppl
- first_name: L.
  full_name: Steffen, L. Kraig
  last_name: Steffen
- first_name: Stefan
  full_name: Filipp, Stefan
  last_name: Filipp
- first_name: Peter
  full_name: Leek, Peter J
  last_name: Leek
- first_name: Alexandre
  full_name: Blais, Alexandre
  last_name: Blais
- first_name: Andreas
  full_name: Wallraff, Andreas
  last_name: Wallraff
citation:
  ama: Fink JM, Bianchetti R, Baur M, et al. Dressed collective qubit states and the
    Tavis-Cummings model in circuit QED. <i>Physical Review Letters</i>. 2009;103(8).
    doi:<a href="https://doi.org/10.1103/PhysRevLett.103.083601">10.1103/PhysRevLett.103.083601</a>
  apa: Fink, J. M., Bianchetti, R., Baur, M., Göppl, M., Steffen, L., Filipp, S.,
    … Wallraff, A. (2009). Dressed collective qubit states and the Tavis-Cummings
    model in circuit QED. <i>Physical Review Letters</i>. American Physical Society.
    <a href="https://doi.org/10.1103/PhysRevLett.103.083601">https://doi.org/10.1103/PhysRevLett.103.083601</a>
  chicago: Fink, Johannes M, R Bianchetti, Matthias Baur, M Göppl, L. Steffen, Stefan
    Filipp, Peter Leek, Alexandre Blais, and Andreas Wallraff. “Dressed Collective
    Qubit States and the Tavis-Cummings Model in Circuit QED.” <i>Physical Review
    Letters</i>. American Physical Society, 2009. <a href="https://doi.org/10.1103/PhysRevLett.103.083601">https://doi.org/10.1103/PhysRevLett.103.083601</a>.
  ieee: J. M. Fink <i>et al.</i>, “Dressed collective qubit states and the Tavis-Cummings
    model in circuit QED,” <i>Physical Review Letters</i>, vol. 103, no. 8. American
    Physical Society, 2009.
  ista: Fink JM, Bianchetti R, Baur M, Göppl M, Steffen L, Filipp S, Leek P, Blais
    A, Wallraff A. 2009. Dressed collective qubit states and the Tavis-Cummings model
    in circuit QED. Physical Review Letters. 103(8).
  mla: Fink, Johannes M., et al. “Dressed Collective Qubit States and the Tavis-Cummings
    Model in Circuit QED.” <i>Physical Review Letters</i>, vol. 103, no. 8, American
    Physical Society, 2009, doi:<a href="https://doi.org/10.1103/PhysRevLett.103.083601">10.1103/PhysRevLett.103.083601</a>.
  short: J.M. Fink, R. Bianchetti, M. Baur, M. Göppl, L. Steffen, S. Filipp, P. Leek,
    A. Blais, A. Wallraff, Physical Review Letters 103 (2009).
date_created: 2018-12-11T11:53:55Z
date_published: 2009-08-17T00:00:00Z
date_updated: 2021-01-12T06:53:05Z
day: '17'
doi: 10.1103/PhysRevLett.103.083601
extern: 1
intvolume: '       103'
issue: '8'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0812.2651
month: '08'
oa: 1
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '5350'
quality_controlled: 0
status: public
title: Dressed collective qubit states and the Tavis-Cummings model in circuit QED
type: journal_article
volume: 103
year: '2009'
...
---
_id: '1770'
abstract:
- lang: eng
  text: The quantum state of a superconducting qubit nonresonantly coupled to a transmission
    line resonator can be determined by measuring the quadrature amplitudes of an
    electromagnetic field transmitted through the resonator. We present experiments
    in which we analyze in detail the dynamics of the transmitted field as a function
    of the measurement frequency for both weak continuous and pulsed measurements.
    We find excellent agreement between our data and calculations based on a set of
    Bloch-type differential equations for the cavity field derived from the dispersive
    Jaynes-Cummings Hamiltonian including dissipation. We show that the measured system
    response can be used to construct a measurement operator from which the qubit
    population can be inferred accurately. Such a measurement operator can be used
    in tomographic methods to reconstruct single and multiqubit states in ensemble-averaged
    measurements.
acknowledgement: This work was supported by the SNF Project No. 111899 and ETH Zurich.
  A.B. was supported by NSERC, CIFAR, and the Alfred P. Sloan Foundation
author:
- first_name: R
  full_name: Bianchetti, R
  last_name: Bianchetti
- first_name: Stefan
  full_name: Filipp, Stefan
  last_name: Filipp
- first_name: Matthias
  full_name: Baur, Matthias P
  last_name: Baur
- first_name: Johannes M
  full_name: Johannes Fink
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: M
  full_name: Göppl, M
  last_name: Göppl
- first_name: Peter
  full_name: Leek, Peter J
  last_name: Leek
- first_name: L.
  full_name: Steffen, L. Kraig
  last_name: Steffen
- first_name: Alexandre
  full_name: Blais, Alexandre
  last_name: Blais
- first_name: Andreas
  full_name: Wallraff, Andreas
  last_name: Wallraff
citation:
  ama: Bianchetti R, Filipp S, Baur M, et al. Dynamics of dispersive single-qubit
    readout in circuit quantum electrodynamics. <i>Physical Review A - Atomic, Molecular,
    and Optical Physics</i>. 2009;80(4). doi:<a href="https://doi.org/10.1103/PhysRevA.80.043840">10.1103/PhysRevA.80.043840</a>
  apa: Bianchetti, R., Filipp, S., Baur, M., Fink, J. M., Göppl, M., Leek, P., … Wallraff,
    A. (2009). Dynamics of dispersive single-qubit readout in circuit quantum electrodynamics.
    <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical
    Society. <a href="https://doi.org/10.1103/PhysRevA.80.043840">https://doi.org/10.1103/PhysRevA.80.043840</a>
  chicago: Bianchetti, R, Stefan Filipp, Matthias Baur, Johannes M Fink, M Göppl,
    Peter Leek, L. Steffen, Alexandre Blais, and Andreas Wallraff. “Dynamics of Dispersive
    Single-Qubit Readout in Circuit Quantum Electrodynamics.” <i>Physical Review A
    - Atomic, Molecular, and Optical Physics</i>. American Physical Society, 2009.
    <a href="https://doi.org/10.1103/PhysRevA.80.043840">https://doi.org/10.1103/PhysRevA.80.043840</a>.
  ieee: R. Bianchetti <i>et al.</i>, “Dynamics of dispersive single-qubit readout
    in circuit quantum electrodynamics,” <i>Physical Review A - Atomic, Molecular,
    and Optical Physics</i>, vol. 80, no. 4. American Physical Society, 2009.
  ista: Bianchetti R, Filipp S, Baur M, Fink JM, Göppl M, Leek P, Steffen L, Blais
    A, Wallraff A. 2009. Dynamics of dispersive single-qubit readout in circuit quantum
    electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. 80(4).
  mla: Bianchetti, R., et al. “Dynamics of Dispersive Single-Qubit Readout in Circuit
    Quantum Electrodynamics.” <i>Physical Review A - Atomic, Molecular, and Optical
    Physics</i>, vol. 80, no. 4, American Physical Society, 2009, doi:<a href="https://doi.org/10.1103/PhysRevA.80.043840">10.1103/PhysRevA.80.043840</a>.
  short: R. Bianchetti, S. Filipp, M. Baur, J.M. Fink, M. Göppl, P. Leek, L. Steffen,
    A. Blais, A. Wallraff, Physical Review A - Atomic, Molecular, and Optical Physics
    80 (2009).
date_created: 2018-12-11T11:53:55Z
date_published: 2009-10-30T00:00:00Z
date_updated: 2021-01-12T06:53:05Z
day: '30'
doi: 10.1103/PhysRevA.80.043840
extern: 1
intvolume: '        80'
issue: '4'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0907.2549
month: '10'
oa: 1
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '5349'
quality_controlled: 0
status: public
title: Dynamics of dispersive single-qubit readout in circuit quantum electrodynamics
type: journal_article
volume: 80
year: '2009'
...
---
_id: '1771'
abstract:
- lang: eng
  text: The exceptionally strong coupling realizable between superconducting qubits
    and photons stored in an on-chip microwave resonator allows for the detailed study
    of matter-light interactions in the realm of circuit quantum electrodynamics (QED).
    Here we investigate the resonant interaction between a single transmon-type multilevel
    artificial atom and weak thermal and coherent fields. We explore up to three photon
    dressed states of the coupled system in a linear response heterodyne transmission
    measurement. The results are in good quantitative agreement with a generalized
    Jaynes-Cummings model. Our data indicate that the role of thermal fields in resonant
    cavity QED can be studied in detail using superconducting circuits.
acknowledgement: Nobel Foundation
author:
- first_name: Johannes M
  full_name: Johannes Fink
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: Matthias
  full_name: Baur, Matthias P
  last_name: Baur
- first_name: R
  full_name: Bianchetti, R
  last_name: Bianchetti
- first_name: Stefan
  full_name: Filipp, Stefan
  last_name: Filipp
- first_name: M
  full_name: Göppl, M
  last_name: Göppl
- first_name: Peter
  full_name: Leek, Peter J
  last_name: Leek
- first_name: L.
  full_name: Steffen, L. Kraig
  last_name: Steffen
- first_name: Alexandre
  full_name: Blais, Alexandre
  last_name: Blais
- first_name: Andreas
  full_name: Wallraff, Andreas
  last_name: Wallraff
citation:
  ama: Fink JM, Baur M, Bianchetti R, et al. Thermal excitation of multi-photon dressed
    states in circuit quantum electrodynamics. <i>Physica Scripta T</i>. 2009;T137.
    doi:<a href="https://doi.org/10.1088/0031-8949/2009/T137/014013">10.1088/0031-8949/2009/T137/014013</a>
  apa: Fink, J. M., Baur, M., Bianchetti, R., Filipp, S., Göppl, M., Leek, P., … Wallraff,
    A. (2009). Thermal excitation of multi-photon dressed states in circuit quantum
    electrodynamics. <i>Physica Scripta T</i>. IOP Publishing Ltd. <a href="https://doi.org/10.1088/0031-8949/2009/T137/014013">https://doi.org/10.1088/0031-8949/2009/T137/014013</a>
  chicago: Fink, Johannes M, Matthias Baur, R Bianchetti, Stefan Filipp, M Göppl,
    Peter Leek, L. Steffen, Alexandre Blais, and Andreas Wallraff. “Thermal Excitation
    of Multi-Photon Dressed States in Circuit Quantum Electrodynamics.” <i>Physica
    Scripta T</i>. IOP Publishing Ltd., 2009. <a href="https://doi.org/10.1088/0031-8949/2009/T137/014013">https://doi.org/10.1088/0031-8949/2009/T137/014013</a>.
  ieee: J. M. Fink <i>et al.</i>, “Thermal excitation of multi-photon dressed states
    in circuit quantum electrodynamics,” <i>Physica Scripta T</i>, vol. T137. IOP
    Publishing Ltd., 2009.
  ista: Fink JM, Baur M, Bianchetti R, Filipp S, Göppl M, Leek P, Steffen L, Blais
    A, Wallraff A. 2009. Thermal excitation of multi-photon dressed states in circuit
    quantum electrodynamics. Physica Scripta T. T137.
  mla: Fink, Johannes M., et al. “Thermal Excitation of Multi-Photon Dressed States
    in Circuit Quantum Electrodynamics.” <i>Physica Scripta T</i>, vol. T137, IOP
    Publishing Ltd., 2009, doi:<a href="https://doi.org/10.1088/0031-8949/2009/T137/014013">10.1088/0031-8949/2009/T137/014013</a>.
  short: J.M. Fink, M. Baur, R. Bianchetti, S. Filipp, M. Göppl, P. Leek, L. Steffen,
    A. Blais, A. Wallraff, Physica Scripta T T137 (2009).
date_created: 2018-12-11T11:53:55Z
date_published: 2009-01-01T00:00:00Z
date_updated: 2021-01-12T06:53:06Z
day: '01'
doi: 10.1088/0031-8949/2009/T137/014013
extern: 1
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0911.3797
month: '01'
oa: 1
publication: Physica Scripta T
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '5348'
quality_controlled: 0
status: public
title: Thermal excitation of multi-photon dressed states in circuit quantum electrodynamics
type: journal_article
volume: T137
year: '2009'
...
---
_id: '1798'
abstract:
- lang: eng
  text: The mammalian brain is assembled from thousands of neuronal cell types that
    are organized in distinct circuits to perform behaviorally relevant computations.
    Transgenic mouse lines with selectively marked cell types would facilitate our
    ability to dissect functional components of complex circuits. We carried out a
    screen for cell type-specific green fluorescent protein expression in the retina
    using BAC transgenic mice from the GENSAT project. Among others, we identified
    mouse lines in which the inhibitory cell types of the night vision and directional
    selective circuit were selectively labeled. We quantified the stratification patterns
    to predict potential synaptic connectivity between marked cells of different lines
    and found that some of the lines enabled targeted recordings and imaging of cell
    types from developing or mature retinal circuits. Our results suggest the potential
    use of a stratification-based screening approach for characterizing neuronal circuitry
    in other layered brain structures, such as the neocortex.
acknowledgement: This study was supported by Friedrich Miescher Institute funds, a
  US Office of Naval Research Naval International Cooperative Opportunities in Science
  and Technology Program grant, a Marie Curie Excellence grant, a National Center
  for Competence in Research in Genetics grant and a European Union HEALTH-F2-223156
  grant to B.R., and by National Institute of Neurological Disorders and Stroke contracts
  N01NS02331 and HHSN271200723701C to N.H.
author:
- first_name: Sandra
  full_name: Sandra Siegert
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
- first_name: Brigitte
  full_name: Scherf, Brigitte G
  last_name: Scherf
- first_name: Karina
  full_name: Del Punta, Karina
  last_name: Del Punta
- first_name: Nick
  full_name: Didkovsky, Nick
  last_name: Didkovsky
- first_name: Nathaniel
  full_name: Heintz, Nathaniel M
  last_name: Heintz
- first_name: Botond
  full_name: Roska, Botond M
  last_name: Roska
citation:
  ama: Siegert S, Scherf B, Del Punta K, Didkovsky N, Heintz N, Roska B. Genetic address
    book for retinal cell types. <i>Nature Neuroscience</i>. 2009;12(9):1197-1204.
    doi:<a href="https://doi.org/10.1038/nn.2370">10.1038/nn.2370</a>
  apa: Siegert, S., Scherf, B., Del Punta, K., Didkovsky, N., Heintz, N., &#38; Roska,
    B. (2009). Genetic address book for retinal cell types. <i>Nature Neuroscience</i>.
    Nature Publishing Group. <a href="https://doi.org/10.1038/nn.2370">https://doi.org/10.1038/nn.2370</a>
  chicago: Siegert, Sandra, Brigitte Scherf, Karina Del Punta, Nick Didkovsky, Nathaniel
    Heintz, and Botond Roska. “Genetic Address Book for Retinal Cell Types.” <i>Nature
    Neuroscience</i>. Nature Publishing Group, 2009. <a href="https://doi.org/10.1038/nn.2370">https://doi.org/10.1038/nn.2370</a>.
  ieee: S. Siegert, B. Scherf, K. Del Punta, N. Didkovsky, N. Heintz, and B. Roska,
    “Genetic address book for retinal cell types,” <i>Nature Neuroscience</i>, vol.
    12, no. 9. Nature Publishing Group, pp. 1197–1204, 2009.
  ista: Siegert S, Scherf B, Del Punta K, Didkovsky N, Heintz N, Roska B. 2009. Genetic
    address book for retinal cell types. Nature Neuroscience. 12(9), 1197–1204.
  mla: Siegert, Sandra, et al. “Genetic Address Book for Retinal Cell Types.” <i>Nature
    Neuroscience</i>, vol. 12, no. 9, Nature Publishing Group, 2009, pp. 1197–204,
    doi:<a href="https://doi.org/10.1038/nn.2370">10.1038/nn.2370</a>.
  short: S. Siegert, B. Scherf, K. Del Punta, N. Didkovsky, N. Heintz, B. Roska, Nature
    Neuroscience 12 (2009) 1197–1204.
date_created: 2018-12-11T11:54:04Z
date_published: 2009-09-01T00:00:00Z
date_updated: 2021-01-12T06:53:16Z
day: '01'
doi: 10.1038/nn.2370
extern: 1
intvolume: '        12'
issue: '9'
month: '09'
page: 1197 - 1204
publication: Nature Neuroscience
publication_status: published
publisher: Nature Publishing Group
publist_id: '5312'
quality_controlled: 0
status: public
title: Genetic address book for retinal cell types
type: journal_article
volume: 12
year: '2009'
...
---
_id: '1799'
abstract:
- lang: eng
  text: 'The detection of approaching objects, such as looming predators, is necessary
    for survival. Which neurons and circuits mediate this function? We combined genetic
    labeling of cell types, two-photon microscopy, electrophysiology and theoretical
    modeling to address this question. We identify an approach-sensitive ganglion
    cell type in the mouse retina, resolve elements of its afferent neural circuit,
    and describe how these confer approach sensitivity on the ganglion cell. The circuit''s
    essential building block is a rapid inhibitory pathway: it selectively suppresses
    responses to non-approaching objects. This rapid inhibitory pathway, which includes
    AII amacrine cells connected to bipolar cells through electrical synapses, was
    previously described in the context of night-time vision. In the daytime conditions
    of our experiments, the same pathway conveys signals in the reverse direction.
    The dual use of a neural pathway in different physiological conditions illustrates
    the efficiency with which several functions can be accommodated in a single circuit.'
acknowledgement: The study was supported by Friedrich Miescher Institute funds, a
  US Office of Naval Research Naval International Cooperative Opportunities in Science
  and Technology program grant, a Marie Curie Excellence Grant, a Human Frontier Science
  Program Young Investigator grant, a National Centers of Competence in Research in
  Genetics grant and a European Union HEALTH-F2-223156 grant to B.R., a Marie Curie
  Postdoctoral Fellowship to T.A.M., the Centre National de la Recherche Scientifique
  through the Unité Mixte de Recherche 8550 to R.A.d.S.
author:
- first_name: Thomas
  full_name: Münch, Thomas A
  last_name: Münch
- first_name: Ravá
  full_name: Da Silveira, Ravá A
  last_name: Da Silveira
- first_name: Sandra
  full_name: Sandra Siegert
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
- first_name: Tim
  full_name: Viney, Tim J
  last_name: Viney
- first_name: Gautam
  full_name: Awatramani, Gautam B
  last_name: Awatramani
- first_name: Botond
  full_name: Roska, Botond M
  last_name: Roska
citation:
  ama: Münch T, Da Silveira R, Siegert S, Viney T, Awatramani G, Roska B. Approach
    sensitivity in the retina processed by a multifunctional neural circuit. <i>Nature
    Neuroscience</i>. 2009;12(10):1308-1316. doi:<a href="https://doi.org/10.1038/nn.2389">10.1038/nn.2389</a>
  apa: Münch, T., Da Silveira, R., Siegert, S., Viney, T., Awatramani, G., &#38; Roska,
    B. (2009). Approach sensitivity in the retina processed by a multifunctional neural
    circuit. <i>Nature Neuroscience</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/nn.2389">https://doi.org/10.1038/nn.2389</a>
  chicago: Münch, Thomas, Ravá Da Silveira, Sandra Siegert, Tim Viney, Gautam Awatramani,
    and Botond Roska. “Approach Sensitivity in the Retina Processed by a Multifunctional
    Neural Circuit.” <i>Nature Neuroscience</i>. Nature Publishing Group, 2009. <a
    href="https://doi.org/10.1038/nn.2389">https://doi.org/10.1038/nn.2389</a>.
  ieee: T. Münch, R. Da Silveira, S. Siegert, T. Viney, G. Awatramani, and B. Roska,
    “Approach sensitivity in the retina processed by a multifunctional neural circuit,”
    <i>Nature Neuroscience</i>, vol. 12, no. 10. Nature Publishing Group, pp. 1308–1316,
    2009.
  ista: Münch T, Da Silveira R, Siegert S, Viney T, Awatramani G, Roska B. 2009. Approach
    sensitivity in the retina processed by a multifunctional neural circuit. Nature
    Neuroscience. 12(10), 1308–1316.
  mla: Münch, Thomas, et al. “Approach Sensitivity in the Retina Processed by a Multifunctional
    Neural Circuit.” <i>Nature Neuroscience</i>, vol. 12, no. 10, Nature Publishing
    Group, 2009, pp. 1308–16, doi:<a href="https://doi.org/10.1038/nn.2389">10.1038/nn.2389</a>.
  short: T. Münch, R. Da Silveira, S. Siegert, T. Viney, G. Awatramani, B. Roska,
    Nature Neuroscience 12 (2009) 1308–1316.
date_created: 2018-12-11T11:54:04Z
date_published: 2009-10-01T00:00:00Z
date_updated: 2021-01-12T06:53:16Z
day: '01'
doi: 10.1038/nn.2389
extern: 1
intvolume: '        12'
issue: '10'
month: '10'
page: 1308 - 1316
publication: Nature Neuroscience
publication_status: published
publisher: Nature Publishing Group
publist_id: '5311'
quality_controlled: 0
status: public
title: Approach sensitivity in the retina processed by a multifunctional neural circuit
type: journal_article
volume: 12
year: '2009'
...
---
_id: '1825'
abstract:
- lang: eng
  text: 'Many membrane channels and receptors exhibit adaptive, or desensitized, response
    to a strong sustained input stimulus. A key mechanism that underlies this response
    is the slow, activity-dependent removal of responding molecules to a pool which
    is unavailable to respond immediately to the input. This mechanism is implemented
    in different ways in various biological systems and has traditionally been studied
    separately for each. Here we highlight the common aspects of this principle, shared
    by many biological systems, and suggest a unifying theoretical framework. We study
    theoretically a class of models which describes the general mechanism and allows
    us to distinguish its universal from system-specific features. We show that under
    general conditions, regardless of the details of kinetics, molecule availability
    encodes an averaging over past activity and feeds back multiplicatively on the
    system output. The kinetics of recovery from unavailability determines the effective
    memory kernel inside the feedback branch, giving rise to a variety of system-specific
    forms of adaptive response—precise or input-dependent, exponential or power-law—as
    special cases of the same model. '
author:
- first_name: Tamar
  full_name: Tamar Friedlander
  id: 36A5845C-F248-11E8-B48F-1D18A9856A87
  last_name: Friedlander
- first_name: Naama
  full_name: Brenner, Naama
  last_name: Brenner
citation:
  ama: Friedlander T, Brenner N. Adaptive response by state-dependent inactivation.
    <i>PNAS</i>. 2009;106(52):22558-22563. doi:<a href="https://doi.org/10.1073/pnas.0902146106
    ">10.1073/pnas.0902146106 </a>
  apa: Friedlander, T., &#38; Brenner, N. (2009). Adaptive response by state-dependent
    inactivation. <i>PNAS</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.0902146106
    ">https://doi.org/10.1073/pnas.0902146106 </a>
  chicago: Friedlander, Tamar, and Naama Brenner. “Adaptive Response by State-Dependent
    Inactivation.” <i>PNAS</i>. National Academy of Sciences, 2009. <a href="https://doi.org/10.1073/pnas.0902146106
    ">https://doi.org/10.1073/pnas.0902146106 </a>.
  ieee: T. Friedlander and N. Brenner, “Adaptive response by state-dependent inactivation,”
    <i>PNAS</i>, vol. 106, no. 52. National Academy of Sciences, pp. 22558–22563,
    2009.
  ista: Friedlander T, Brenner N. 2009. Adaptive response by state-dependent inactivation.
    PNAS. 106(52), 22558–22563.
  mla: Friedlander, Tamar, and Naama Brenner. “Adaptive Response by State-Dependent
    Inactivation.” <i>PNAS</i>, vol. 106, no. 52, National Academy of Sciences, 2009,
    pp. 22558–63, doi:<a href="https://doi.org/10.1073/pnas.0902146106 ">10.1073/pnas.0902146106
    </a>.
  short: T. Friedlander, N. Brenner, PNAS 106 (2009) 22558–22563.
date_created: 2018-12-11T11:54:13Z
date_published: 2009-12-01T00:00:00Z
date_updated: 2021-01-12T06:53:26Z
day: '01'
doi: '10.1073/pnas.0902146106 '
extern: 1
intvolume: '       106'
issue: '52'
main_file_link:
- open_access: '1'
  url: http://www.pnas.org/content/106/52/22558.full.pdf
month: '12'
oa: 1
page: 22558 - 22563
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '5281'
quality_controlled: 0
status: public
title: Adaptive response by state-dependent inactivation
type: journal_article
volume: 106
year: '2009'
...
---
_id: '1971'
abstract:
- lang: eng
  text: Complex I plays a central role in cellular energy production, coupling electron
    transfer between NADH and quinone to proton translocation. The mechanism of this
    highly efficient enzyme is currently unknown. Mitochondrial complex I is a major
    source of reactive oxygen species, which may be one of the causes of aging. Dysfunction
    of complex I is implicated in many human neurodegenerative diseases. We have determined
    several x-ray structures of the oxidized and reduced hydrophilic domain of complex
    I from Thermus thermophilus at up to 3.1 Å resolution. The structures reveal the
    mode of interaction of complex I with NADH, explaining known kinetic data and
    providing implications for the mechanism of reactive oxygen species production
    at the flavin site of complex I. Bound metals were identified in the channel at
    the interface with the frataxin-like subunit Nqo15, indicating possible iron-binding
    sites. Conformational changes upon reduction of the complex involve adjustments
    in the nucleotide-binding pocket, as well as small but significant shifts of several
    α-helices at the interface with the membrane domain. These shifts are likely to
    be driven by the reduction of nearby iron-sulfur clusters N2 and N6a/b. Cluster
    N2 is the electron donor to quinone and is coordinated by unique motif involving
    two consecutive (tandem) cysteines. An unprecedented &quot;on/off switch&quot;
    (disconnection) of coordinating bonds between the tandem cysteines and this cluster
    was observed upon reduction. Comparison of the structures suggests a novel mechanism
    of coupling between electron transfer and proton translocation, combining conformational
    changes and protonation/deprotonation of tandem cysteines.
acknowledgement: 'This work was supported by the Medical Research Council. '
author:
- first_name: John
  full_name: Berrisford, John M
  last_name: Berrisford
- first_name: Leonid A
  full_name: Leonid Sazanov
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: Berrisford J, Sazanov LA. Structural basis for the mechanism of respiratory
    complex I. <i>Journal of Biological Chemistry</i>. 2009;284(43):29773-29783. doi:<a
    href="https://doi.org/10.1074/jbc.M109.032144">10.1074/jbc.M109.032144</a>
  apa: Berrisford, J., &#38; Sazanov, L. A. (2009). Structural basis for the mechanism
    of respiratory complex I. <i>Journal of Biological Chemistry</i>. American Society
    for Biochemistry and Molecular Biology. <a href="https://doi.org/10.1074/jbc.M109.032144">https://doi.org/10.1074/jbc.M109.032144</a>
  chicago: Berrisford, John, and Leonid A Sazanov. “Structural Basis for the Mechanism
    of Respiratory Complex I.” <i>Journal of Biological Chemistry</i>. American Society
    for Biochemistry and Molecular Biology, 2009. <a href="https://doi.org/10.1074/jbc.M109.032144">https://doi.org/10.1074/jbc.M109.032144</a>.
  ieee: J. Berrisford and L. A. Sazanov, “Structural basis for the mechanism of respiratory
    complex I,” <i>Journal of Biological Chemistry</i>, vol. 284, no. 43. American
    Society for Biochemistry and Molecular Biology, pp. 29773–29783, 2009.
  ista: Berrisford J, Sazanov LA. 2009. Structural basis for the mechanism of respiratory
    complex I. Journal of Biological Chemistry. 284(43), 29773–29783.
  mla: Berrisford, John, and Leonid A. Sazanov. “Structural Basis for the Mechanism
    of Respiratory Complex I.” <i>Journal of Biological Chemistry</i>, vol. 284, no.
    43, American Society for Biochemistry and Molecular Biology, 2009, pp. 29773–83,
    doi:<a href="https://doi.org/10.1074/jbc.M109.032144">10.1074/jbc.M109.032144</a>.
  short: J. Berrisford, L.A. Sazanov, Journal of Biological Chemistry 284 (2009) 29773–29783.
date_created: 2018-12-11T11:54:59Z
date_published: 2009-10-23T00:00:00Z
date_updated: 2021-01-12T06:54:26Z
day: '23'
doi: 10.1074/jbc.M109.032144
extern: 1
intvolume: '       284'
issue: '43'
month: '10'
page: 29773 - 29783
publication: Journal of Biological Chemistry
publication_status: published
publisher: American Society for Biochemistry and Molecular Biology
publist_id: '5114'
quality_controlled: 0
status: public
title: Structural basis for the mechanism of respiratory complex I
type: journal_article
volume: 284
year: '2009'
...
---
_id: '1983'
abstract:
- lang: eng
  text: 'During many cellular processes such as cell division, polarization and motility,
    the plasma membrane does not only represent a passive physical barrier, but also
    provides a highly dynamic platform for the interplay between lipids, membrane
    binding proteins and cytoskeletal elements. Even though many regulators of these
    interactions are known, their mutual interdependence appears to be highly complex
    and difficult to study in a living cell. Over the past few years, in vitro studies
    on membrane-cytoskeleton interactions using biomimetic membranes turned out to
    be extremely helpful to get better mechanistic insight into the dynamics of these
    processes. In this review, we discuss some of the recent developments using in
    vitro assays to dissect the role of the players involved: lipids in the membrane,
    proteins binding to membranes and proteins binding to membrane proteins. We also
    summarize advantages and disadvantages of supported lipid bilayers as model membrane.'
author:
- first_name: Martin
  full_name: Martin Loose
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
- first_name: Petra
  full_name: 'Schwille, Petra '
  last_name: Schwille
citation:
  ama: Loose M, Schwille P. Biomimetic membrane systems to study cellular organization.
    <i>Journal of Structural Biology</i>. 2009;168(1):143-151. doi:<a href="https://doi.org/10.1016/j.jsb.2009.03.016">10.1016/j.jsb.2009.03.016</a>
  apa: Loose, M., &#38; Schwille, P. (2009). Biomimetic membrane systems to study
    cellular organization. <i>Journal of Structural Biology</i>. Academic Press. <a
    href="https://doi.org/10.1016/j.jsb.2009.03.016">https://doi.org/10.1016/j.jsb.2009.03.016</a>
  chicago: Loose, Martin, and Petra Schwille. “Biomimetic Membrane Systems to Study
    Cellular Organization.” <i>Journal of Structural Biology</i>. Academic Press,
    2009. <a href="https://doi.org/10.1016/j.jsb.2009.03.016">https://doi.org/10.1016/j.jsb.2009.03.016</a>.
  ieee: M. Loose and P. Schwille, “Biomimetic membrane systems to study cellular organization,”
    <i>Journal of Structural Biology</i>, vol. 168, no. 1. Academic Press, pp. 143–151,
    2009.
  ista: Loose M, Schwille P. 2009. Biomimetic membrane systems to study cellular organization.
    Journal of Structural Biology. 168(1), 143–151.
  mla: Loose, Martin, and Petra Schwille. “Biomimetic Membrane Systems to Study Cellular
    Organization.” <i>Journal of Structural Biology</i>, vol. 168, no. 1, Academic
    Press, 2009, pp. 143–51, doi:<a href="https://doi.org/10.1016/j.jsb.2009.03.016">10.1016/j.jsb.2009.03.016</a>.
  short: M. Loose, P. Schwille, Journal of Structural Biology 168 (2009) 143–151.
date_created: 2018-12-11T11:55:03Z
date_published: 2009-10-01T00:00:00Z
date_updated: 2021-01-12T06:54:30Z
day: '01'
doi: 10.1016/j.jsb.2009.03.016
extern: 1
intvolume: '       168'
issue: '1'
month: '10'
page: 143 - 151
publication: Journal of Structural Biology
publication_status: published
publisher: Academic Press
publist_id: '5099'
quality_controlled: 0
status: public
title: Biomimetic membrane systems to study cellular organization
type: journal_article
volume: 168
year: '2009'
...
---
_id: '1984'
abstract:
- lang: eng
  text: In animal and plant cells, mitotic chromatin locally generates microtubules
    that self-organize into a mitotic spindle, and its dimensions and bipolar symmetry
    are essential for accurate chromosome segregation. By immobilizing microscopic
    chromatin-coated beads on slide surfaces using a microprinting technique, we have
    examined the effect of chromatin on the dimensions and symmetry of spindles in
    Xenopus laevis cytoplasmic extracts. While circular spots with diameters around
    14-18 μm trigger bipolar spindle formation, larger spots generate an incorrect
    number of poles. We also examined lines of chromatin with various dimensions.
    Their length determined the number of poles that formed, with a 6 × 18 μm rectangular
    patch generating normal spindle morphology. Around longer lines, multiple poles
    formed and the structures were disorganized. While lines thinner than 10 μm generated
    symmetric structures, thicker lines induced the formation of asymmetric structures
    where all microtubules are on the same side of the line. Our results show that
    chromatin defines spindle shape and orientation. For a video summary of this article,
    see the PaperFlick file available with the online Supplemental Data.
acknowledgement: This work was supported by EU contract LSHG-CT-2004-503568 ComBio,
  the Spanish ministry of education (M.M.C.), and EU-STREP active BioMics (A.D.).
  Research in the Nedelec lab is funded by the Center for Modeling and Simulation
  in the Biosciences (http://www.bioms.de), the Volkswagenstiftung, and Human Frontier
  Science Program grant RGY84.
author:
- first_name: Ana
  full_name: Dinarina, Ana
  last_name: Dinarina
- first_name: Céline
  full_name: Pugieux, Céline
  last_name: Pugieux
- first_name: Maria
  full_name: Corral, Maria M
  last_name: Corral
- first_name: Martin
  full_name: Martin Loose
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
- first_name: Joachim
  full_name: Spatz, Joachim P
  last_name: Spatz
- first_name: Éric
  full_name: Karsenti, Éric
  last_name: Karsenti
- first_name: François
  full_name: Nédélec, François J
  last_name: Nédélec
citation:
  ama: Dinarina A, Pugieux C, Corral M, et al. Chromatin shapes the mitotic spindle.
    <i>Cell</i>. 2009;138(3):502-513. doi:<a href="https://doi.org/10.1016/j.cell.2009.05.027">10.1016/j.cell.2009.05.027</a>
  apa: Dinarina, A., Pugieux, C., Corral, M., Loose, M., Spatz, J., Karsenti, É.,
    &#38; Nédélec, F. (2009). Chromatin shapes the mitotic spindle. <i>Cell</i>. Cell
    Press. <a href="https://doi.org/10.1016/j.cell.2009.05.027">https://doi.org/10.1016/j.cell.2009.05.027</a>
  chicago: Dinarina, Ana, Céline Pugieux, Maria Corral, Martin Loose, Joachim Spatz,
    Éric Karsenti, and François Nédélec. “Chromatin Shapes the Mitotic Spindle.” <i>Cell</i>.
    Cell Press, 2009. <a href="https://doi.org/10.1016/j.cell.2009.05.027">https://doi.org/10.1016/j.cell.2009.05.027</a>.
  ieee: A. Dinarina <i>et al.</i>, “Chromatin shapes the mitotic spindle,” <i>Cell</i>,
    vol. 138, no. 3. Cell Press, pp. 502–513, 2009.
  ista: Dinarina A, Pugieux C, Corral M, Loose M, Spatz J, Karsenti É, Nédélec F.
    2009. Chromatin shapes the mitotic spindle. Cell. 138(3), 502–513.
  mla: Dinarina, Ana, et al. “Chromatin Shapes the Mitotic Spindle.” <i>Cell</i>,
    vol. 138, no. 3, Cell Press, 2009, pp. 502–13, doi:<a href="https://doi.org/10.1016/j.cell.2009.05.027">10.1016/j.cell.2009.05.027</a>.
  short: A. Dinarina, C. Pugieux, M. Corral, M. Loose, J. Spatz, É. Karsenti, F. Nédélec,
    Cell 138 (2009) 502–513.
date_created: 2018-12-11T11:55:03Z
date_published: 2009-08-07T00:00:00Z
date_updated: 2021-01-12T06:54:30Z
day: '07'
doi: 10.1016/j.cell.2009.05.027
extern: 1
intvolume: '       138'
issue: '3'
month: '08'
page: 502 - 513
publication: Cell
publication_status: published
publisher: Cell Press
publist_id: '5100'
quality_controlled: 0
status: public
title: Chromatin shapes the mitotic spindle
type: journal_article
volume: 138
year: '2009'
...
---
_id: '2067'
acknowledgement: This work was funded by a Portuguese Foundation for Science and Technology
  scholarship to B.V., and B.C. was supported by the Royal Society
author:
- first_name: Beatriz
  full_name: Beatriz Vicoso
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Brian
  full_name: Charlesworth, Brian
  last_name: Charlesworth
citation:
  ama: Vicoso B, Charlesworth B. Recombination rates may affect the ratio of X to
    autosomal noncoding polymorphism in African populations of Drosophila melanogaster.
    <i>Genetics</i>. 2009;181(4):1699-1701. doi:<a href="https://doi.org/10.1534/genetics.108.098004">10.1534/genetics.108.098004</a>
  apa: Vicoso, B., &#38; Charlesworth, B. (2009). Recombination rates may affect the
    ratio of X to autosomal noncoding polymorphism in African populations of Drosophila
    melanogaster. <i>Genetics</i>. Genetics Society of America. <a href="https://doi.org/10.1534/genetics.108.098004">https://doi.org/10.1534/genetics.108.098004</a>
  chicago: Vicoso, Beatriz, and Brian Charlesworth. “Recombination Rates May Affect
    the Ratio of X to Autosomal Noncoding Polymorphism in African Populations of Drosophila
    Melanogaster.” <i>Genetics</i>. Genetics Society of America, 2009. <a href="https://doi.org/10.1534/genetics.108.098004">https://doi.org/10.1534/genetics.108.098004</a>.
  ieee: B. Vicoso and B. Charlesworth, “Recombination rates may affect the ratio of
    X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster,”
    <i>Genetics</i>, vol. 181, no. 4. Genetics Society of America, pp. 1699–1701,
    2009.
  ista: Vicoso B, Charlesworth B. 2009. Recombination rates may affect the ratio of
    X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster.
    Genetics. 181(4), 1699–1701.
  mla: Vicoso, Beatriz, and Brian Charlesworth. “Recombination Rates May Affect the
    Ratio of X to Autosomal Noncoding Polymorphism in African Populations of Drosophila
    Melanogaster.” <i>Genetics</i>, vol. 181, no. 4, Genetics Society of America,
    2009, pp. 1699–701, doi:<a href="https://doi.org/10.1534/genetics.108.098004">10.1534/genetics.108.098004</a>.
  short: B. Vicoso, B. Charlesworth, Genetics 181 (2009) 1699–1701.
date_created: 2018-12-11T11:55:31Z
date_published: 2009-04-01T00:00:00Z
date_updated: 2021-01-12T06:55:06Z
day: '01'
doi: 10.1534/genetics.108.098004
extern: 1
intvolume: '       181'
issue: '4'
month: '04'
page: 1699 - 1701
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '4971'
quality_controlled: 0
status: public
title: Recombination rates may affect the ratio of X to autosomal noncoding polymorphism
  in African populations of Drosophila melanogaster
type: journal_article
volume: 181
year: '2009'
...
---
_id: '2068'
abstract:
- lang: eng
  text: In Drosophila, there is a consistent deficit of male-biased genes on the X
    chromosome. It has been suggested that male-biased genes may evolve from initially
    unbiased genes as a result of increased expression levels in males. If transcription
    rates are limited, a large increase in expression in the testis may be harder
    to achieve for single-copy X-linked genes than for autosomal genes, because they
    are already hypertranscribed due to dosage compensation. This hypothesis predicts
    that the larger the increase in expression required to make a male-biased gene,
    the lower the chance of this being achievable if it is located on the X chromosome.
    Consequently, highly expressed male-biased genes should be located on the X chromosome
    less often than lowly expressed male-biased genes. This pattern is observed in
    our analysis of publicly available data, where microarray data or EST data are
    used to detect male-biased genes in D. melanogaster and to measure their expression
    levels. This is consistent with the idea that limitations in transcription rates
    may prevent male-biased genes from accumulating on the X chromosome.
acknowledgement: This work was funded by a Portuguese Foundation for Science and Technology
  scholarship to B.V., and B.C. was supported by the Royal Society
author:
- first_name: Beatriz
  full_name: Beatriz Vicoso
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Brian
  full_name: Charlesworth, Brian
  last_name: Charlesworth
citation:
  ama: 'Vicoso B, Charlesworth B. The deficit of male-biased genes on the D. melanogaster
    X chromosome is expression-dependent: A consequence of dosage compensation? <i>Journal
    of Molecular Evolution</i>. 2009;68(5):576-583. doi:<a href="https://doi.org/10.1007/s00239-009-9235-4">10.1007/s00239-009-9235-4</a>'
  apa: 'Vicoso, B., &#38; Charlesworth, B. (2009). The deficit of male-biased genes
    on the D. melanogaster X chromosome is expression-dependent: A consequence of
    dosage compensation? <i>Journal of Molecular Evolution</i>. Springer. <a href="https://doi.org/10.1007/s00239-009-9235-4">https://doi.org/10.1007/s00239-009-9235-4</a>'
  chicago: 'Vicoso, Beatriz, and Brian Charlesworth. “The Deficit of Male-Biased Genes
    on the D. Melanogaster X Chromosome Is Expression-Dependent: A Consequence of
    Dosage Compensation?” <i>Journal of Molecular Evolution</i>. Springer, 2009. <a
    href="https://doi.org/10.1007/s00239-009-9235-4">https://doi.org/10.1007/s00239-009-9235-4</a>.'
  ieee: 'B. Vicoso and B. Charlesworth, “The deficit of male-biased genes on the D.
    melanogaster X chromosome is expression-dependent: A consequence of dosage compensation?,”
    <i>Journal of Molecular Evolution</i>, vol. 68, no. 5. Springer, pp. 576–583,
    2009.'
  ista: 'Vicoso B, Charlesworth B. 2009. The deficit of male-biased genes on the D.
    melanogaster X chromosome is expression-dependent: A consequence of dosage compensation?
    Journal of Molecular Evolution. 68(5), 576–583.'
  mla: 'Vicoso, Beatriz, and Brian Charlesworth. “The Deficit of Male-Biased Genes
    on the D. Melanogaster X Chromosome Is Expression-Dependent: A Consequence of
    Dosage Compensation?” <i>Journal of Molecular Evolution</i>, vol. 68, no. 5, Springer,
    2009, pp. 576–83, doi:<a href="https://doi.org/10.1007/s00239-009-9235-4">10.1007/s00239-009-9235-4</a>.'
  short: B. Vicoso, B. Charlesworth, Journal of Molecular Evolution 68 (2009) 576–583.
date_created: 2018-12-11T11:55:31Z
date_published: 2009-05-01T00:00:00Z
date_updated: 2021-01-12T06:55:06Z
day: '01'
doi: 10.1007/s00239-009-9235-4
extern: 1
intvolume: '        68'
issue: '5'
month: '05'
page: 576 - 583
publication: Journal of Molecular Evolution
publication_status: published
publisher: Springer
publist_id: '4970'
quality_controlled: 0
status: public
title: 'The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent:
  A consequence of dosage compensation?'
type: journal_article
volume: 68
year: '2009'
...
---
_id: '2069'
abstract:
- lang: eng
  text: Current models of X-linked and autosomal evolutionary rates often assume that
    the effective population size of the X chromosome (NeX) is equal to three-quarters
    of the autosomal population size (NeA). However, polymorphism studies of Drosophila
    melanogaster and D. simulans suggest that there are often significant deviations
    from this value. We have computed fixation rates of beneficial and deleterious
    mutations at X-linked and autosomal sites when this occurs. We find that NeX/NeA
    is a crucial parameter for the rates of evolution of X-linked sites compared to
    autosomal sites. Faster-X evolution due to the fixation of beneficial mutations
    can occur under a much wider range of levels of dominance when NeX/N eA &gt; 3/4.
    We also examined various parameters that are known to influence the rates of evolution
    at X-linked and autosomal sites, such as different mutation rates in males and
    females and mutations that are sexually antagonistic, to determine which cases
    can lead to faster-X evolution. We show that, when the rate of nonsynonymous evolution
    is normalized by the rate of neutral evolution, a sex difference in mutation rate
    has no influence on the conditions for faster-X evolution.
acknowledgement: This work was funded by a Portuguese Foundation for Science and Technology
  scholarship to BV, and BC was supported by the Royal Society
author:
- first_name: Beatriz
  full_name: Beatriz Vicoso
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Brian
  full_name: Charlesworth, Brian
  last_name: Charlesworth
citation:
  ama: 'Vicoso B, Charlesworth B. Effective population size and the faster-X effect:
    An extended model. <i>Evolution</i>. 2009;63(9):2413-2426. doi:<a href="https://doi.org/10.1111/j.1558-5646.2009.00719.x">10.1111/j.1558-5646.2009.00719.x</a>'
  apa: 'Vicoso, B., &#38; Charlesworth, B. (2009). Effective population size and the
    faster-X effect: An extended model. <i>Evolution</i>. Wiley-Blackwell. <a href="https://doi.org/10.1111/j.1558-5646.2009.00719.x">https://doi.org/10.1111/j.1558-5646.2009.00719.x</a>'
  chicago: 'Vicoso, Beatriz, and Brian Charlesworth. “Effective Population Size and
    the Faster-X Effect: An Extended Model.” <i>Evolution</i>. Wiley-Blackwell, 2009.
    <a href="https://doi.org/10.1111/j.1558-5646.2009.00719.x">https://doi.org/10.1111/j.1558-5646.2009.00719.x</a>.'
  ieee: 'B. Vicoso and B. Charlesworth, “Effective population size and the faster-X
    effect: An extended model,” <i>Evolution</i>, vol. 63, no. 9. Wiley-Blackwell,
    pp. 2413–2426, 2009.'
  ista: 'Vicoso B, Charlesworth B. 2009. Effective population size and the faster-X
    effect: An extended model. Evolution. 63(9), 2413–2426.'
  mla: 'Vicoso, Beatriz, and Brian Charlesworth. “Effective Population Size and the
    Faster-X Effect: An Extended Model.” <i>Evolution</i>, vol. 63, no. 9, Wiley-Blackwell,
    2009, pp. 2413–26, doi:<a href="https://doi.org/10.1111/j.1558-5646.2009.00719.x">10.1111/j.1558-5646.2009.00719.x</a>.'
  short: B. Vicoso, B. Charlesworth, Evolution 63 (2009) 2413–2426.
date_created: 2018-12-11T11:55:32Z
date_published: 2009-09-01T00:00:00Z
date_updated: 2021-01-12T06:55:06Z
day: '01'
doi: 10.1111/j.1558-5646.2009.00719.x
extern: 1
intvolume: '        63'
issue: '9'
month: '09'
page: 2413 - 2426
publication: Evolution
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4968'
quality_controlled: 0
status: public
title: 'Effective population size and the faster-X effect: An extended model'
type: journal_article
volume: 63
year: '2009'
...
---
_id: '13414'
abstract:
- lang: eng
  text: Supraspherical aggregates of crosslinked metal nanoparticles are transformed
    into pancakes and nanorods by mechanical stresses and shears imparted by macroscopic
    objects (see image). The dimensions of both types of nanostructures can be controlled
    by the pressures applied.
article_processing_charge: No
article_type: original
author:
- first_name: Kevin P.
  full_name: Browne, Kevin P.
  last_name: Browne
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: JulieAnn
  full_name: Villa, JulieAnn
  last_name: Villa
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Browne KP, Klajn R, Villa J, Grzybowski BA. Mechanofabrication of pancake and
    rodlike nanostructures from deformable nanoparticle aggregates. <i>Small</i>.
    2009;5(23):2656-2658. doi:<a href="https://doi.org/10.1002/smll.200900902">10.1002/smll.200900902</a>
  apa: Browne, K. P., Klajn, R., Villa, J., &#38; Grzybowski, B. A. (2009). Mechanofabrication
    of pancake and rodlike nanostructures from deformable nanoparticle aggregates.
    <i>Small</i>. Wiley. <a href="https://doi.org/10.1002/smll.200900902">https://doi.org/10.1002/smll.200900902</a>
  chicago: Browne, Kevin P., Rafal Klajn, JulieAnn Villa, and Bartosz A. Grzybowski.
    “Mechanofabrication of Pancake and Rodlike Nanostructures from Deformable Nanoparticle
    Aggregates.” <i>Small</i>. Wiley, 2009. <a href="https://doi.org/10.1002/smll.200900902">https://doi.org/10.1002/smll.200900902</a>.
  ieee: K. P. Browne, R. Klajn, J. Villa, and B. A. Grzybowski, “Mechanofabrication
    of pancake and rodlike nanostructures from deformable nanoparticle aggregates,”
    <i>Small</i>, vol. 5, no. 23. Wiley, pp. 2656–2658, 2009.
  ista: Browne KP, Klajn R, Villa J, Grzybowski BA. 2009. Mechanofabrication of pancake
    and rodlike nanostructures from deformable nanoparticle aggregates. Small. 5(23),
    2656–2658.
  mla: Browne, Kevin P., et al. “Mechanofabrication of Pancake and Rodlike Nanostructures
    from Deformable Nanoparticle Aggregates.” <i>Small</i>, vol. 5, no. 23, Wiley,
    2009, pp. 2656–58, doi:<a href="https://doi.org/10.1002/smll.200900902">10.1002/smll.200900902</a>.
  short: K.P. Browne, R. Klajn, J. Villa, B.A. Grzybowski, Small 5 (2009) 2656–2658.
date_created: 2023-08-01T09:50:12Z
date_published: 2009-12-01T00:00:00Z
date_updated: 2023-08-08T08:49:22Z
day: '01'
doi: 10.1002/smll.200900902
extern: '1'
external_id:
  pmid:
  - '19771567'
intvolume: '         5'
issue: '23'
keyword:
- Biomaterials
- Biotechnology
- General Materials Science
- General Chemistry
language:
- iso: eng
month: '12'
oa_version: None
page: 2656-2658
pmid: 1
publication: Small
publication_identifier:
  eissn:
  - 1613-6829
  issn:
  - 1613-6810
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mechanofabrication of pancake and rodlike nanostructures from deformable nanoparticle
  aggregates
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2009'
...
---
_id: '13415'
abstract:
- lang: eng
  text: Systems in which nanoscale components of different types can be captured and/or
    released from organic scaffolds provide a fertile basis for the construction of
    dynamic, exchangeable functional materials. In such heterogeneous systems, the
    components interact with one another by means of programmable, noncovalent bonding
    interactions. Herein, we describe polymers that capture and release functionalized
    nanoparticles selectively during redox-controlled aggregation and disaggregation,
    respectively. The interactions between the polymer and the NPs are mediated by
    the reversible formation of polypseudorotaxanes, and give rise to architectures
    ranging from short chains composed of few nanoparticles to extended networks of
    nanoparticles crosslinked by the polymer. In the latter case, the polymer/nanoparticle
    aggregates precipitate from solution such that the polymer acts as a selective
    ‘sponge’ for the capture/release of the nanoparticles of different types.
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Mark A.
  full_name: Olson, Mark A.
  last_name: Olson
- first_name: Paul J.
  full_name: Wesson, Paul J.
  last_name: Wesson
- first_name: Lei
  full_name: Fang, Lei
  last_name: Fang
- first_name: Ali
  full_name: Coskun, Ali
  last_name: Coskun
- first_name: Ali
  full_name: Trabolsi, Ali
  last_name: Trabolsi
- first_name: Siowling
  full_name: Soh, Siowling
  last_name: Soh
- first_name: J. Fraser
  full_name: Stoddart, J. Fraser
  last_name: Stoddart
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Klajn R, Olson MA, Wesson PJ, et al. Dynamic hook-and-eye nanoparticle sponges.
    <i>Nature Chemistry</i>. 2009;1:733-738. doi:<a href="https://doi.org/10.1038/nchem.432">10.1038/nchem.432</a>
  apa: Klajn, R., Olson, M. A., Wesson, P. J., Fang, L., Coskun, A., Trabolsi, A.,
    … Grzybowski, B. A. (2009). Dynamic hook-and-eye nanoparticle sponges. <i>Nature
    Chemistry</i>. Springer Nature. <a href="https://doi.org/10.1038/nchem.432">https://doi.org/10.1038/nchem.432</a>
  chicago: Klajn, Rafal, Mark A. Olson, Paul J. Wesson, Lei Fang, Ali Coskun, Ali
    Trabolsi, Siowling Soh, J. Fraser Stoddart, and Bartosz A. Grzybowski. “Dynamic
    Hook-and-Eye Nanoparticle Sponges.” <i>Nature Chemistry</i>. Springer Nature,
    2009. <a href="https://doi.org/10.1038/nchem.432">https://doi.org/10.1038/nchem.432</a>.
  ieee: R. Klajn <i>et al.</i>, “Dynamic hook-and-eye nanoparticle sponges,” <i>Nature
    Chemistry</i>, vol. 1. Springer Nature, pp. 733–738, 2009.
  ista: Klajn R, Olson MA, Wesson PJ, Fang L, Coskun A, Trabolsi A, Soh S, Stoddart
    JF, Grzybowski BA. 2009. Dynamic hook-and-eye nanoparticle sponges. Nature Chemistry.
    1, 733–738.
  mla: Klajn, Rafal, et al. “Dynamic Hook-and-Eye Nanoparticle Sponges.” <i>Nature
    Chemistry</i>, vol. 1, Springer Nature, 2009, pp. 733–38, doi:<a href="https://doi.org/10.1038/nchem.432">10.1038/nchem.432</a>.
  short: R. Klajn, M.A. Olson, P.J. Wesson, L. Fang, A. Coskun, A. Trabolsi, S. Soh,
    J.F. Stoddart, B.A. Grzybowski, Nature Chemistry 1 (2009) 733–738.
date_created: 2023-08-01T09:50:23Z
date_published: 2009-12-01T00:00:00Z
date_updated: 2023-08-08T08:55:36Z
day: '01'
doi: 10.1038/nchem.432
extern: '1'
external_id:
  pmid:
  - '21124361'
intvolume: '         1'
keyword:
- General Chemical Engineering
- General Chemistry
language:
- iso: eng
month: '12'
oa_version: None
page: 733-738
pmid: 1
publication: Nature Chemistry
publication_identifier:
  eissn:
  - 1755-4349
  issn:
  - 1755-4330
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dynamic hook-and-eye nanoparticle sponges
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2009'
...
---
_id: '13416'
abstract:
- lang: eng
  text: The reversible molecular template-directed self-assembly of gold nanoparticles
    (AuNPs), a process which relies solely on noncovalent bonding interactions, has
    been demonstrated by high-resolution transmission electron microscopy (HR-TEM).
    By employing a well-known host−guest binding motif, the AuNPs have been systemized
    into discrete dimers, trimers, and tetramers. These nanoparticulate twins, triplets,
    and quadruplets, which can be disassembled and reassembled either chemically or
    electrochemically, can be coalesced into larger, permanent polygonal structures
    by thermal treatment using a focused HR-TEM electron beam.
article_processing_charge: No
article_type: original
author:
- first_name: Mark A.
  full_name: Olson, Mark A.
  last_name: Olson
- first_name: Ali
  full_name: Coskun, Ali
  last_name: Coskun
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Lei
  full_name: Fang, Lei
  last_name: Fang
- first_name: Sanjeev K.
  full_name: Dey, Sanjeev K.
  last_name: Dey
- first_name: Kevin P.
  full_name: Browne, Kevin P.
  last_name: Browne
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
- first_name: J. Fraser
  full_name: Stoddart, J. Fraser
  last_name: Stoddart
citation:
  ama: Olson MA, Coskun A, Klajn R, et al. Assembly of polygonal nanoparticle clusters
    directed by reversible noncovalent bonding interactions. <i>Nano Letters</i>.
    2009;9(9):3185-3190. doi:<a href="https://doi.org/10.1021/nl901385c">10.1021/nl901385c</a>
  apa: Olson, M. A., Coskun, A., Klajn, R., Fang, L., Dey, S. K., Browne, K. P., …
    Stoddart, J. F. (2009). Assembly of polygonal nanoparticle clusters directed by
    reversible noncovalent bonding interactions. <i>Nano Letters</i>. American Chemical
    Society. <a href="https://doi.org/10.1021/nl901385c">https://doi.org/10.1021/nl901385c</a>
  chicago: Olson, Mark A., Ali Coskun, Rafal Klajn, Lei Fang, Sanjeev K. Dey, Kevin
    P. Browne, Bartosz A. Grzybowski, and J. Fraser Stoddart. “Assembly of Polygonal
    Nanoparticle Clusters Directed by Reversible Noncovalent Bonding Interactions.”
    <i>Nano Letters</i>. American Chemical Society, 2009. <a href="https://doi.org/10.1021/nl901385c">https://doi.org/10.1021/nl901385c</a>.
  ieee: M. A. Olson <i>et al.</i>, “Assembly of polygonal nanoparticle clusters directed
    by reversible noncovalent bonding interactions,” <i>Nano Letters</i>, vol. 9,
    no. 9. American Chemical Society, pp. 3185–3190, 2009.
  ista: Olson MA, Coskun A, Klajn R, Fang L, Dey SK, Browne KP, Grzybowski BA, Stoddart
    JF. 2009. Assembly of polygonal nanoparticle clusters directed by reversible noncovalent
    bonding interactions. Nano Letters. 9(9), 3185–3190.
  mla: Olson, Mark A., et al. “Assembly of Polygonal Nanoparticle Clusters Directed
    by Reversible Noncovalent Bonding Interactions.” <i>Nano Letters</i>, vol. 9,
    no. 9, American Chemical Society, 2009, pp. 3185–90, doi:<a href="https://doi.org/10.1021/nl901385c">10.1021/nl901385c</a>.
  short: M.A. Olson, A. Coskun, R. Klajn, L. Fang, S.K. Dey, K.P. Browne, B.A. Grzybowski,
    J.F. Stoddart, Nano Letters 9 (2009) 3185–3190.
date_created: 2023-08-01T10:29:27Z
date_published: 2009-09-09T00:00:00Z
date_updated: 2023-08-08T08:57:34Z
day: '09'
doi: 10.1021/nl901385c
extern: '1'
external_id:
  pmid:
  - '19694461'
intvolume: '         9'
issue: '9'
keyword:
- Mechanical Engineering
- Condensed Matter Physics
- General Materials Science
- General Chemistry
- Bioengineering
language:
- iso: eng
month: '09'
oa_version: None
page: 3185-3190
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
  issn:
  - 1530-6984
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Assembly of polygonal nanoparticle clusters directed by reversible noncovalent
  bonding interactions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2009'
...
---
_id: '13417'
abstract:
- lang: eng
  text: 'Mission Impossible: Metal nanoparticles (NPs) coated with photoresponsive
    ligands are used as “inks” for self-erasing “paper” whereby light-induced self-assembly
    of the NPs is transduced into local color changes (see picture). Depending on
    the degree of self-assembly, multicolor images can be written using only one type
    of NP ink. Duration of image erasure is regulated by the surface concentration
    of photoactive groups and can range from seconds to days.'
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Paul J.
  full_name: Wesson, Paul J.
  last_name: Wesson
- first_name: Kyle J. M.
  full_name: Bishop, Kyle J. M.
  last_name: Bishop
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Klajn R, Wesson PJ, Bishop KJM, Grzybowski BA. Writing self-erasing images
    using metastable nanoparticle “inks.” <i>Angewandte Chemie International Edition</i>.
    2009;48(38):7035-7039. doi:<a href="https://doi.org/10.1002/anie.200901119">10.1002/anie.200901119</a>
  apa: Klajn, R., Wesson, P. J., Bishop, K. J. M., &#38; Grzybowski, B. A. (2009).
    Writing self-erasing images using metastable nanoparticle “inks.” <i>Angewandte
    Chemie International Edition</i>. Wiley. <a href="https://doi.org/10.1002/anie.200901119">https://doi.org/10.1002/anie.200901119</a>
  chicago: Klajn, Rafal, Paul J. Wesson, Kyle J. M. Bishop, and Bartosz A. Grzybowski.
    “Writing Self-Erasing Images Using Metastable Nanoparticle ‘Inks.’” <i>Angewandte
    Chemie International Edition</i>. Wiley, 2009. <a href="https://doi.org/10.1002/anie.200901119">https://doi.org/10.1002/anie.200901119</a>.
  ieee: R. Klajn, P. J. Wesson, K. J. M. Bishop, and B. A. Grzybowski, “Writing self-erasing
    images using metastable nanoparticle ‘inks,’” <i>Angewandte Chemie International
    Edition</i>, vol. 48, no. 38. Wiley, pp. 7035–7039, 2009.
  ista: Klajn R, Wesson PJ, Bishop KJM, Grzybowski BA. 2009. Writing self-erasing
    images using metastable nanoparticle “inks”. Angewandte Chemie International Edition.
    48(38), 7035–7039.
  mla: Klajn, Rafal, et al. “Writing Self-Erasing Images Using Metastable Nanoparticle
    ‘Inks.’” <i>Angewandte Chemie International Edition</i>, vol. 48, no. 38, Wiley,
    2009, pp. 7035–39, doi:<a href="https://doi.org/10.1002/anie.200901119">10.1002/anie.200901119</a>.
  short: R. Klajn, P.J. Wesson, K.J.M. Bishop, B.A. Grzybowski, Angewandte Chemie
    International Edition 48 (2009) 7035–7039.
date_created: 2023-08-01T10:29:38Z
date_published: 2009-09-01T00:00:00Z
date_updated: 2023-08-08T08:59:15Z
day: '01'
doi: 10.1002/anie.200901119
extern: '1'
external_id:
  pmid:
  - '19533698'
intvolume: '        48'
issue: '38'
keyword:
- General Chemistry
- Catalysis
language:
- iso: eng
month: '09'
oa_version: None
page: 7035-7039
pmid: 1
publication: Angewandte Chemie International Edition
publication_identifier:
  eissn:
  - 1521-3773
  issn:
  - 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Writing self-erasing images using metastable nanoparticle “inks”
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 48
year: '2009'
...
---
_id: '13418'
abstract:
- lang: eng
  text: In traditional photoconductors1,2,3, the impinging light generates mobile
    charge carriers in the valence and/or conduction bands, causing the material’s
    conductivity to increase4. Such positive photoconductance is observed in both
    bulk and nanostructured5,6 photoconductors. Here we describe a class of nanoparticle-based
    materials whose conductivity can either increase or decrease on irradiation with
    visible light of wavelengths close to the particles’ surface plasmon resonance.
    The remarkable feature of these plasmonic materials is that the sign of the conductivity
    change and the nature of the electron transport between the nanoparticles depend
    on the molecules comprising the self-assembled monolayers (SAMs)7,8 stabilizing
    the nanoparticles. For SAMs made of electrically neutral (polar and non-polar)
    molecules, conductivity increases on irradiation. If, however, the SAMs contain
    electrically charged (either negatively or positively) groups, conductivity decreases.
    The optical and electrical characteristics of these previously undescribed inverse
    photoconductors can be engineered flexibly by adjusting the material properties
    of the nanoparticles and of the coating SAMs. In particular, in films comprising
    mixtures of different nanoparticles or nanoparticles coated with mixed SAMs, the
    overall photoconductance is a weighted average of the changes induced by the individual
    components. These and other observations can be rationalized in terms of light-induced
    creation of mobile charge carriers whose transport through the charged SAMs is
    inhibited by carrier trapping in transient polaron-like states9,10. The nanoparticle-based
    photoconductors we describe could have uses in chemical sensors and/or in conjunction
    with flexible substrates.
article_processing_charge: No
article_type: original
author:
- first_name: Hideyuki
  full_name: Nakanishi, Hideyuki
  last_name: Nakanishi
- first_name: Kyle J. M.
  full_name: Bishop, Kyle J. M.
  last_name: Bishop
- first_name: Bartlomiej
  full_name: Kowalczyk, Bartlomiej
  last_name: Kowalczyk
- first_name: Abraham
  full_name: Nitzan, Abraham
  last_name: Nitzan
- first_name: Emily A.
  full_name: Weiss, Emily A.
  last_name: Weiss
- first_name: Konstantin V.
  full_name: Tretiakov, Konstantin V.
  last_name: Tretiakov
- first_name: Mario M.
  full_name: Apodaca, Mario M.
  last_name: Apodaca
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: J. Fraser
  full_name: Stoddart, J. Fraser
  last_name: Stoddart
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Nakanishi H, Bishop KJM, Kowalczyk B, et al. Photoconductance and inverse photoconductance
    in films of functionalized metal nanoparticles. <i>Nature</i>. 2009;460(7253):371-375.
    doi:<a href="https://doi.org/10.1038/nature08131">10.1038/nature08131</a>
  apa: Nakanishi, H., Bishop, K. J. M., Kowalczyk, B., Nitzan, A., Weiss, E. A., Tretiakov,
    K. V., … Grzybowski, B. A. (2009). Photoconductance and inverse photoconductance
    in films of functionalized metal nanoparticles. <i>Nature</i>. Springer Nature.
    <a href="https://doi.org/10.1038/nature08131">https://doi.org/10.1038/nature08131</a>
  chicago: Nakanishi, Hideyuki, Kyle J. M. Bishop, Bartlomiej Kowalczyk, Abraham Nitzan,
    Emily A. Weiss, Konstantin V. Tretiakov, Mario M. Apodaca, Rafal Klajn, J. Fraser
    Stoddart, and Bartosz A. Grzybowski. “Photoconductance and Inverse Photoconductance
    in Films of Functionalized Metal Nanoparticles.” <i>Nature</i>. Springer Nature,
    2009. <a href="https://doi.org/10.1038/nature08131">https://doi.org/10.1038/nature08131</a>.
  ieee: H. Nakanishi <i>et al.</i>, “Photoconductance and inverse photoconductance
    in films of functionalized metal nanoparticles,” <i>Nature</i>, vol. 460, no.
    7253. Springer Nature, pp. 371–375, 2009.
  ista: Nakanishi H, Bishop KJM, Kowalczyk B, Nitzan A, Weiss EA, Tretiakov KV, Apodaca
    MM, Klajn R, Stoddart JF, Grzybowski BA. 2009. Photoconductance and inverse photoconductance
    in films of functionalized metal nanoparticles. Nature. 460(7253), 371–375.
  mla: Nakanishi, Hideyuki, et al. “Photoconductance and Inverse Photoconductance
    in Films of Functionalized Metal Nanoparticles.” <i>Nature</i>, vol. 460, no.
    7253, Springer Nature, 2009, pp. 371–75, doi:<a href="https://doi.org/10.1038/nature08131">10.1038/nature08131</a>.
  short: H. Nakanishi, K.J.M. Bishop, B. Kowalczyk, A. Nitzan, E.A. Weiss, K.V. Tretiakov,
    M.M. Apodaca, R. Klajn, J.F. Stoddart, B.A. Grzybowski, Nature 460 (2009) 371–375.
date_created: 2023-08-01T10:29:50Z
date_published: 2009-07-16T00:00:00Z
date_updated: 2023-08-08T09:00:59Z
day: '16'
doi: 10.1038/nature08131
extern: '1'
external_id:
  pmid:
  - '19606145'
intvolume: '       460'
issue: '7253'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '07'
oa_version: None
page: 371-375
pmid: 1
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Photoconductance and inverse photoconductance in films of functionalized metal
  nanoparticles
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 460
year: '2009'
...
---
_id: '13419'
abstract:
- lang: eng
  text: Reaction-diffusion (RD) processes initiated from the surfaces of mesoscopic
    particles can fabricate complex core-and-shell structures. The propagation of
    a sharp RD front selectively removes metal colloids or nanoparticles from the
    supporting gel or polymer matrix. Once fabricated, the core structures can be
    processed “remotely” via galvanic replacement reactions, and the composite particles
    can be assembled into open-lattice crystals.
article_processing_charge: No
article_type: original
author:
- first_name: Paul J.
  full_name: Wesson, Paul J.
  last_name: Wesson
- first_name: Siowling
  full_name: Soh, Siowling
  last_name: Soh
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Kyle J. M.
  full_name: Bishop, Kyle J. M.
  last_name: Bishop
- first_name: Timothy P.
  full_name: Gray, Timothy P.
  last_name: Gray
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: 'Wesson PJ, Soh S, Klajn R, Bishop KJM, Gray TP, Grzybowski BA. “Remote” fabrication
    via three-dimensional reaction-diffusion: Making complex core-and-shell particles
    and assembling them into open-lattice crystals. <i>Advanced Materials</i>. 2009;21(19):1911-1915.
    doi:<a href="https://doi.org/10.1002/adma.200802964">10.1002/adma.200802964</a>'
  apa: 'Wesson, P. J., Soh, S., Klajn, R., Bishop, K. J. M., Gray, T. P., &#38; Grzybowski,
    B. A. (2009). “Remote” fabrication via three-dimensional reaction-diffusion: Making
    complex core-and-shell particles and assembling them into open-lattice crystals.
    <i>Advanced Materials</i>. Wiley. <a href="https://doi.org/10.1002/adma.200802964">https://doi.org/10.1002/adma.200802964</a>'
  chicago: 'Wesson, Paul J., Siowling Soh, Rafal Klajn, Kyle J. M. Bishop, Timothy
    P. Gray, and Bartosz A. Grzybowski. “‘Remote’ Fabrication via Three-Dimensional
    Reaction-Diffusion: Making Complex Core-and-Shell Particles and Assembling Them
    into Open-Lattice Crystals.” <i>Advanced Materials</i>. Wiley, 2009. <a href="https://doi.org/10.1002/adma.200802964">https://doi.org/10.1002/adma.200802964</a>.'
  ieee: 'P. J. Wesson, S. Soh, R. Klajn, K. J. M. Bishop, T. P. Gray, and B. A. Grzybowski,
    “‘Remote’ fabrication via three-dimensional reaction-diffusion: Making complex
    core-and-shell particles and assembling them into open-lattice crystals,” <i>Advanced
    Materials</i>, vol. 21, no. 19. Wiley, pp. 1911–1915, 2009.'
  ista: 'Wesson PJ, Soh S, Klajn R, Bishop KJM, Gray TP, Grzybowski BA. 2009. “Remote”
    fabrication via three-dimensional reaction-diffusion: Making complex core-and-shell
    particles and assembling them into open-lattice crystals. Advanced Materials.
    21(19), 1911–1915.'
  mla: 'Wesson, Paul J., et al. “‘Remote’ Fabrication via Three-Dimensional Reaction-Diffusion:
    Making Complex Core-and-Shell Particles and Assembling Them into Open-Lattice
    Crystals.” <i>Advanced Materials</i>, vol. 21, no. 19, Wiley, 2009, pp. 1911–15,
    doi:<a href="https://doi.org/10.1002/adma.200802964">10.1002/adma.200802964</a>.'
  short: P.J. Wesson, S. Soh, R. Klajn, K.J.M. Bishop, T.P. Gray, B.A. Grzybowski,
    Advanced Materials 21 (2009) 1911–1915.
date_created: 2023-08-01T10:30:04Z
date_published: 2009-05-18T00:00:00Z
date_updated: 2023-08-08T09:04:07Z
day: '18'
doi: 10.1002/adma.200802964
extern: '1'
intvolume: '        21'
issue: '19'
keyword:
- Mechanical Engineering
- Mechanics of Materials
- General Materials Science
language:
- iso: eng
month: '05'
oa_version: None
page: 1911-1915
publication: Advanced Materials
publication_identifier:
  eissn:
  - 1521-4095
  issn:
  - 0935-9648
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: '“Remote” fabrication via three-dimensional reaction-diffusion: Making complex
  core-and-shell particles and assembling them into open-lattice crystals'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2009'
...
---
_id: '13420'
abstract:
- lang: eng
  text: Weakly protected metal nanoparticles (MNPs) are used as precursors for the
    preparation of catenane- and pseudorotaxane-decorated NPs of various compositions
    (gold, palladium, platinum). When attached to the surface of MNPs, the molecular
    switches retain their switching abilities. The redox potentials of these switches
    depend on and can be regulated by the composition of the mixed self-assembled
    monolayers covering the MNPs.
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Lei
  full_name: Fang, Lei
  last_name: Fang
- first_name: Ali
  full_name: Coskun, Ali
  last_name: Coskun
- first_name: Mark A.
  full_name: Olson, Mark A.
  last_name: Olson
- first_name: Paul J.
  full_name: Wesson, Paul J.
  last_name: Wesson
- first_name: J. Fraser
  full_name: Stoddart, J. Fraser
  last_name: Stoddart
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Klajn R, Fang L, Coskun A, et al. Metal nanoparticles functionalized with molecular
    and supramolecular switches. <i>Journal of the American Chemical Society</i>.
    2009;131(12):4233-4235. doi:<a href="https://doi.org/10.1021/ja9001585">10.1021/ja9001585</a>
  apa: Klajn, R., Fang, L., Coskun, A., Olson, M. A., Wesson, P. J., Stoddart, J.
    F., &#38; Grzybowski, B. A. (2009). Metal nanoparticles functionalized with molecular
    and supramolecular switches. <i>Journal of the American Chemical Society</i>.
    American Chemical Society. <a href="https://doi.org/10.1021/ja9001585">https://doi.org/10.1021/ja9001585</a>
  chicago: Klajn, Rafal, Lei Fang, Ali Coskun, Mark A. Olson, Paul J. Wesson, J. Fraser
    Stoddart, and Bartosz A. Grzybowski. “Metal Nanoparticles Functionalized with
    Molecular and Supramolecular Switches.” <i>Journal of the American Chemical Society</i>.
    American Chemical Society, 2009. <a href="https://doi.org/10.1021/ja9001585">https://doi.org/10.1021/ja9001585</a>.
  ieee: R. Klajn <i>et al.</i>, “Metal nanoparticles functionalized with molecular
    and supramolecular switches,” <i>Journal of the American Chemical Society</i>,
    vol. 131, no. 12. American Chemical Society, pp. 4233–4235, 2009.
  ista: Klajn R, Fang L, Coskun A, Olson MA, Wesson PJ, Stoddart JF, Grzybowski BA.
    2009. Metal nanoparticles functionalized with molecular and supramolecular switches.
    Journal of the American Chemical Society. 131(12), 4233–4235.
  mla: Klajn, Rafal, et al. “Metal Nanoparticles Functionalized with Molecular and
    Supramolecular Switches.” <i>Journal of the American Chemical Society</i>, vol.
    131, no. 12, American Chemical Society, 2009, pp. 4233–35, doi:<a href="https://doi.org/10.1021/ja9001585">10.1021/ja9001585</a>.
  short: R. Klajn, L. Fang, A. Coskun, M.A. Olson, P.J. Wesson, J.F. Stoddart, B.A.
    Grzybowski, Journal of the American Chemical Society 131 (2009) 4233–4235.
date_created: 2023-08-01T10:30:17Z
date_published: 2009-04-01T00:00:00Z
date_updated: 2023-08-08T09:06:00Z
day: '01'
doi: 10.1021/ja9001585
extern: '1'
external_id:
  pmid:
  - '19265400'
intvolume: '       131'
issue: '12'
keyword:
- Colloid and Surface Chemistry
- Biochemistry
- General Chemistry
- Catalysis
language:
- iso: eng
month: '04'
oa_version: None
page: 4233-4235
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
  eissn:
  - 1520-5126
  issn:
  - 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Metal nanoparticles functionalized with molecular and supramolecular switches
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 131
year: '2009'
...
