---
_id: '3233'
abstract:
- lang: eng
text: We present a general parallel-repetition theorem with an efficient reduction.
As a corollary of this theorem we establish that parallel repetition reduces the
soundness error at an exponential rate in any public-coin argument, and more generally,
any argument where the verifier's messages, but not necessarily its decision to
accept or reject, can be efficiently simulated with noticeable probability.
alternative_title:
- LNCS
author:
- first_name: Johan
full_name: Håstad, Johan
last_name: Håstad
- first_name: Rafael
full_name: Pass, Rafael
last_name: Pass
- first_name: Douglas
full_name: Wikström, Douglas
last_name: Wikström
- first_name: Krzysztof Z
full_name: Krzysztof Pietrzak
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
citation:
ama: 'Håstad J, Pass R, Wikström D, Pietrzak KZ. An efficient parallel repetition
theorem. In: Vol 5978. Springer; 2010:1-18. doi:10.1007/978-3-642-11799-2_1'
apa: 'Håstad, J., Pass, R., Wikström, D., & Pietrzak, K. Z. (2010). An efficient
parallel repetition theorem (Vol. 5978, pp. 1–18). Presented at the TCC: Theory
of Cryptography Conference, Springer. https://doi.org/10.1007/978-3-642-11799-2_1'
chicago: Håstad, Johan, Rafael Pass, Douglas Wikström, and Krzysztof Z Pietrzak.
“An Efficient Parallel Repetition Theorem,” 5978:1–18. Springer, 2010. https://doi.org/10.1007/978-3-642-11799-2_1.
ieee: 'J. Håstad, R. Pass, D. Wikström, and K. Z. Pietrzak, “An efficient parallel
repetition theorem,” presented at the TCC: Theory of Cryptography Conference,
2010, vol. 5978, pp. 1–18.'
ista: 'Håstad J, Pass R, Wikström D, Pietrzak KZ. 2010. An efficient parallel repetition
theorem. TCC: Theory of Cryptography Conference, LNCS, vol. 5978, 1–18.'
mla: Håstad, Johan, et al. An Efficient Parallel Repetition Theorem. Vol.
5978, Springer, 2010, pp. 1–18, doi:10.1007/978-3-642-11799-2_1.
short: J. Håstad, R. Pass, D. Wikström, K.Z. Pietrzak, in:, Springer, 2010, pp.
1–18.
conference:
name: 'TCC: Theory of Cryptography Conference'
date_created: 2018-12-11T12:02:10Z
date_published: 2010-03-26T00:00:00Z
date_updated: 2021-01-12T07:41:59Z
day: '26'
doi: 10.1007/978-3-642-11799-2_1
extern: 1
intvolume: ' 5978'
month: '03'
page: 1 - 18
publication_status: published
publisher: Springer
publist_id: '3446'
quality_controlled: 0
status: public
title: An efficient parallel repetition theorem
type: conference
volume: 5978
year: '2010'
...
---
_id: '3234'
abstract:
- lang: eng
text: 'The strongest standard security notion for digital signature schemes is unforgeability
under chosen message attacks. In practice, however, this notion can be insufficient
due to "side-channel attacks" which exploit leakage of information about
the secret internal state. In this work we put forward the notion of "leakage-resilient
signatures," which strengthens the standard security notion by giving the
adversary the additional power to learn a bounded amount of arbitrary information
about the secret state that was accessed during every signature generation. This
notion naturally implies security against all side-channel attacks as long as
the amount of information leaked on each invocation is bounded and "only
computation leaks information." The main result of this paper is a construction
which gives a (tree-based, stateful) leakage-resilient signature scheme based
on any 3-time signature scheme. The amount of information that our scheme can
safely leak per signature generation is 1/3 of the information the underlying
3-time signature scheme can leak in total. Signature schemes that remain secure
even if a bounded total amount of information is leaked were recently constructed,
hence instantiating our construction with these schemes gives the first constructions
of provably secure leakage-resilient signature schemes. The above construction
assumes that the signing algorithm can sample truly random bits, and thus an implementation
would need some special hardware (randomness gates). Simply generating this randomness
using a leakage-resilient stream-cipher will in general not work. Our second contribution
is a sound general principle to replace uniform random bits in any leakage-resilient
construction with pseudorandom ones: run two leakage-resilient stream-ciphers
(with independent keys) in parallel and then apply a two-source extractor to their
outputs. '
alternative_title:
- LNCS
author:
- first_name: Sebastian
full_name: Faust, Sebastian
last_name: Faust
- first_name: Eike
full_name: Kiltz, Eike
last_name: Kiltz
- first_name: Krzysztof Z
full_name: Krzysztof Pietrzak
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
- first_name: Guy
full_name: Rothblum, Guy N
last_name: Rothblum
citation:
ama: 'Faust S, Kiltz E, Pietrzak KZ, Rothblum G. Leakage resilient signatures. In:
Vol 5978. Springer; 2010:343-360. doi:10.1007/978-3-642-11799-2_21'
apa: 'Faust, S., Kiltz, E., Pietrzak, K. Z., & Rothblum, G. (2010). Leakage
resilient signatures (Vol. 5978, pp. 343–360). Presented at the TCC: Theory of
Cryptography Conference, Springer. https://doi.org/10.1007/978-3-642-11799-2_21'
chicago: Faust, Sebastian, Eike Kiltz, Krzysztof Z Pietrzak, and Guy Rothblum. “Leakage
Resilient Signatures,” 5978:343–60. Springer, 2010. https://doi.org/10.1007/978-3-642-11799-2_21.
ieee: 'S. Faust, E. Kiltz, K. Z. Pietrzak, and G. Rothblum, “Leakage resilient signatures,”
presented at the TCC: Theory of Cryptography Conference, 2010, vol. 5978, pp.
343–360.'
ista: 'Faust S, Kiltz E, Pietrzak KZ, Rothblum G. 2010. Leakage resilient signatures.
TCC: Theory of Cryptography Conference, LNCS, vol. 5978, 343–360.'
mla: Faust, Sebastian, et al. Leakage Resilient Signatures. Vol. 5978, Springer,
2010, pp. 343–60, doi:10.1007/978-3-642-11799-2_21.
short: S. Faust, E. Kiltz, K.Z. Pietrzak, G. Rothblum, in:, Springer, 2010, pp.
343–360.
conference:
name: 'TCC: Theory of Cryptography Conference'
date_created: 2018-12-11T12:02:10Z
date_published: 2010-03-26T00:00:00Z
date_updated: 2021-01-12T07:41:59Z
day: '26'
doi: 10.1007/978-3-642-11799-2_21
extern: 1
intvolume: ' 5978'
month: '03'
page: 343 - 360
publication_status: published
publisher: Springer
publist_id: '3447'
quality_controlled: 0
status: public
title: Leakage resilient signatures
type: conference
volume: 5978
year: '2010'
...
---
_id: '3235'
abstract:
- lang: eng
text: 'A cryptographic primitive is leakage-resilient, if it remains secure even
if an adversary can learn a bounded amount of arbitrary information about the
computation with every invocation. As a consequence, the physical implementation
of a leakage-resilient primitive is secure against every side-channel as long
as the amount of information leaked per invocation is bounded. In this paper we
prove positive and negative results about the feasibility of constructing leakage-resilient
pseudorandom functions and permutations (i.e. block-ciphers). Our results are
three fold: 1. We construct (from any standard PRF) a PRF which satisfies a relaxed
notion of leakage-resilience where (1) the leakage function is fixed (and not
adaptively chosen with each query.) and (2) the computation is split into several
steps which leak individually (a "step" will be the invocation of the
underlying PRF.) 2. We prove that a Feistel network with a super-logarithmic number
of rounds, each instantiated with a leakage-resilient PRF, is a leakage resilient
PRP. This reduction also holds for the non-adaptive notion just discussed, we
thus get a block-cipher which is leakage-resilient (against non-adaptive leakage).
3. We propose generic side-channel attacks against Feistel networks. The attacks
are generic in the sense that they work for any round functions (e.g. uniformly
random functions) and only require some simple leakage from the inputs to the
round functions. For example we show how to invert an r round Feistel network
over 2n bits making 4•(n+1) r-2 forward queries, if with each query we are also
given as leakage the Hamming weight of the inputs to the r round functions. This
complements the result from the previous item showing that a super-constant number
of rounds is necessary.'
alternative_title:
- LNCS
author:
- first_name: Yevgeniy
full_name: Dodis, Yevgeniy
last_name: Dodis
- first_name: Krzysztof Z
full_name: Krzysztof Pietrzak
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
citation:
ama: 'Dodis Y, Pietrzak KZ. Leakage resilient pseudorandom functions and side channel
attacks on feistel networks. In: Vol 6223. Springer; 2010:21-40. doi:10.1007/978-3-642-14623-7_2'
apa: 'Dodis, Y., & Pietrzak, K. Z. (2010). Leakage resilient pseudorandom functions
and side channel attacks on feistel networks (Vol. 6223, pp. 21–40). Presented
at the CRYPTO: International Cryptology Conference, Springer. https://doi.org/10.1007/978-3-642-14623-7_2'
chicago: Dodis, Yevgeniy, and Krzysztof Z Pietrzak. “Leakage Resilient Pseudorandom
Functions and Side Channel Attacks on Feistel Networks,” 6223:21–40. Springer,
2010. https://doi.org/10.1007/978-3-642-14623-7_2.
ieee: 'Y. Dodis and K. Z. Pietrzak, “Leakage resilient pseudorandom functions and
side channel attacks on feistel networks,” presented at the CRYPTO: International
Cryptology Conference, 2010, vol. 6223, pp. 21–40.'
ista: 'Dodis Y, Pietrzak KZ. 2010. Leakage resilient pseudorandom functions and
side channel attacks on feistel networks. CRYPTO: International Cryptology Conference,
LNCS, vol. 6223, 21–40.'
mla: Dodis, Yevgeniy, and Krzysztof Z. Pietrzak. Leakage Resilient Pseudorandom
Functions and Side Channel Attacks on Feistel Networks. Vol. 6223, Springer,
2010, pp. 21–40, doi:10.1007/978-3-642-14623-7_2.
short: Y. Dodis, K.Z. Pietrzak, in:, Springer, 2010, pp. 21–40.
conference:
name: 'CRYPTO: International Cryptology Conference'
date_created: 2018-12-11T12:02:10Z
date_published: 2010-09-30T00:00:00Z
date_updated: 2021-01-12T07:42:00Z
day: '30'
doi: 10.1007/978-3-642-14623-7_2
extern: 1
intvolume: ' 6223'
month: '09'
page: 21 - 40
publication_status: published
publisher: Springer
publist_id: '3445'
quality_controlled: 0
status: public
title: Leakage resilient pseudorandom functions and side channel attacks on feistel
networks
type: conference
volume: 6223
year: '2010'
...
---
_id: '3237'
abstract:
- lang: eng
text: 'Blinding is a popular and well-known countermeasure to protect public-key
cryptosystems against side-channel attacks. The high level idea is to randomize
an exponentiation in order to prevent multiple measurements of the same operation
on different data, as such measurements might allow the adversary to learn the
secret exponent. Several variants of blinding have been proposed in the literature,
using additive or multiplicative secret-sharing to blind either the base or the
exponent. These countermeasures usually aim at preventing particular side-channel
attacks (mostly power analysis) and come without any formal security guarantee.
In this work we investigate to which extend blinding can provide provable security
against a general class of side-channel attacks. Surprisingly, it turns out that
in the context of public-key encryption some blinding techniques are more suited
than others. In particular, we consider a multiplicatively blinded version of
ElGamal public-key encryption where - we prove that the scheme, instantiated over
bilinear groups of prime order p (where p - 1 is not smooth) is leakage resilient
in the generic-group model. Here we consider the model of chosen-ciphertext security
in the presence of continuous leakage, i.e., the scheme remains chosen-ciphertext
secure even if with every decryption query the adversary can learn a bounded amount
(roughly log(p)/2 bits) of arbitrary, adversarially chosen information about the
computation. - we conjecture that the scheme, instantiated over arbitrary groups
of prime order p (where p - 1 is not smooth) is leakage resilient. Previous to
this work no encryption scheme secure against continuous leakage was known. Constructing
a scheme that can be proven secure in the standard model remains an interesting
open problem. '
alternative_title:
- LNCS
author:
- first_name: Eike
full_name: Kiltz, Eike
last_name: Kiltz
- first_name: Krzysztof Z
full_name: Krzysztof Pietrzak
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
citation:
ama: 'Kiltz E, Pietrzak KZ. Leakage resilient ElGamal encryption. In: Vol 6477.
Springer; 2010:595-612. doi:10.1007/978-3-642-17373-8_34'
apa: 'Kiltz, E., & Pietrzak, K. Z. (2010). Leakage resilient ElGamal encryption
(Vol. 6477, pp. 595–612). Presented at the ASIACRYPT: Theory and Application of
Cryptology and Information Security, Springer. https://doi.org/10.1007/978-3-642-17373-8_34'
chicago: Kiltz, Eike, and Krzysztof Z Pietrzak. “Leakage Resilient ElGamal Encryption,”
6477:595–612. Springer, 2010. https://doi.org/10.1007/978-3-642-17373-8_34.
ieee: 'E. Kiltz and K. Z. Pietrzak, “Leakage resilient ElGamal encryption,” presented
at the ASIACRYPT: Theory and Application of Cryptology and Information Security,
2010, vol. 6477, pp. 595–612.'
ista: 'Kiltz E, Pietrzak KZ. 2010. Leakage resilient ElGamal encryption. ASIACRYPT:
Theory and Application of Cryptology and Information Security, LNCS, vol. 6477,
595–612.'
mla: Kiltz, Eike, and Krzysztof Z. Pietrzak. Leakage Resilient ElGamal Encryption.
Vol. 6477, Springer, 2010, pp. 595–612, doi:10.1007/978-3-642-17373-8_34.
short: E. Kiltz, K.Z. Pietrzak, in:, Springer, 2010, pp. 595–612.
conference:
name: 'ASIACRYPT: Theory and Application of Cryptology and Information Security'
date_created: 2018-12-11T12:02:11Z
date_published: 2010-01-14T00:00:00Z
date_updated: 2021-01-12T07:42:01Z
day: '14'
doi: 10.1007/978-3-642-17373-8_34
extern: 1
intvolume: ' 6477'
month: '01'
page: 595 - 612
publication_status: published
publisher: Springer
publist_id: '3444'
quality_controlled: 0
status: public
title: Leakage resilient ElGamal encryption
type: conference
volume: 6477
year: '2010'
...
---
_id: '3294'
abstract:
- lang: eng
text: 'Olfactory responses of Drosophila undergo pronounced changes after eclosion.
The flies develop attraction to odors to which they are exposed and aversion to
other odors. Behavioral adaptation is correlated with changes in the firing pattern
of olfactory receptor neurons (ORNs). In this article, we present an information-theoretic
analysis of the firing pattern of ORNs. Flies reared in a synthetic odorless medium
were transferred after eclosion to three different media: (i) a synthetic medium
relatively devoid of odor cues, (ii) synthetic medium infused with a single odorant,
and (iii) complex cornmeal medium rich in odors. Recordings were made from an
identified sensillum (type II), and the Jensen-Shannon divergence (D(JS)) was
used to assess quantitatively the differences between ensemble spike responses
to different odors. Analysis shows that prolonged exposure to ethyl acetate and
several related esters increases sensitivity to these esters but does not improve
the ability of the fly to distinguish between them. Flies exposed to cornmeal
display varied sensitivity to these odorants and at the same time develop greater
capacity to distinguish between odors. Deprivation of odor experience on an odorless
synthetic medium leads to a loss of both sensitivity and acuity. Rich olfactory
experience thus helps to shape the ORNs response and enhances its discriminative
power. The experiments presented here demonstrate an experience-dependent adaptation
at the level of the receptor neuron.'
author:
- first_name: Atulya
full_name: Iyengar, Atulya
last_name: Iyengar
- first_name: Subhra
full_name: Chakraborty Tuhin, Subhra
last_name: Chakraborty Tuhin
- first_name: Sarit
full_name: Sarit Goswami
id: 3A578F32-F248-11E8-B48F-1D18A9856A87
last_name: Goswami
- first_name: Chun
full_name: Wu, Chun Fang
last_name: Wu
- first_name: Obaid
full_name: Siddiqi, Obaid
last_name: Siddiqi
citation:
ama: Iyengar A, Chakraborty Tuhin S, Goswami S, Wu C, Siddiqi O. Post eclosion odor
experience modifies olfactory receptor neuron coding in Drosophila. PNAS.
2010;107(21):9855-9860. doi:10.1073/pnas.1003856107
apa: Iyengar, A., Chakraborty Tuhin, S., Goswami, S., Wu, C., & Siddiqi, O.
(2010). Post eclosion odor experience modifies olfactory receptor neuron coding
in Drosophila. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1003856107
chicago: Iyengar, Atulya, Subhra Chakraborty Tuhin, Sarit Goswami, Chun Wu, and
Obaid Siddiqi. “Post Eclosion Odor Experience Modifies Olfactory Receptor Neuron
Coding in Drosophila.” PNAS. National Academy of Sciences, 2010. https://doi.org/10.1073/pnas.1003856107.
ieee: A. Iyengar, S. Chakraborty Tuhin, S. Goswami, C. Wu, and O. Siddiqi, “Post
eclosion odor experience modifies olfactory receptor neuron coding in Drosophila,”
PNAS, vol. 107, no. 21. National Academy of Sciences, pp. 9855–60, 2010.
ista: Iyengar A, Chakraborty Tuhin S, Goswami S, Wu C, Siddiqi O. 2010. Post eclosion
odor experience modifies olfactory receptor neuron coding in Drosophila. PNAS.
107(21), 9855–60.
mla: Iyengar, Atulya, et al. “Post Eclosion Odor Experience Modifies Olfactory Receptor
Neuron Coding in Drosophila.” PNAS, vol. 107, no. 21, National Academy
of Sciences, 2010, pp. 9855–60, doi:10.1073/pnas.1003856107.
short: A. Iyengar, S. Chakraborty Tuhin, S. Goswami, C. Wu, O. Siddiqi, PNAS 107
(2010) 9855–60.
date_created: 2018-12-11T12:02:31Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2021-01-12T07:42:27Z
day: '01'
doi: 10.1073/pnas.1003856107
extern: 1
intvolume: ' 107'
issue: '21'
month: '01'
page: 9855 - 60
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '3347'
quality_controlled: 0
status: public
title: Post eclosion odor experience modifies olfactory receptor neuron coding in
Drosophila
type: journal_article
volume: 107
year: '2010'
...
---
_id: '3296'
abstract:
- lang: eng
text: "Accurate computational representations of highly deformable surfaces are
indispensable in the fields of computer animation, medical simulation, computer
vision, digital modeling, and computational physics. The focus of this dissertation
is on the animation of physics-based phenomena with highly detailed deformable
surfaces represented by triangle meshes.\r\n \r\nWe first present results from
an algorithm that generates continuum mechanics animations with intricate surface
features. This method combines a finite element method with a tetrahedral mesh
generator and a high resolution surface mesh, and it is orders of magnitude more
efficient than previous approaches. Next, we present an efficient solution for
the challenging problem of computing topological changes in detailed dynamic surface
meshes. We then introduce a new physics-inspired surface tracking algorithm that
is capable of preserving arbitrarily thin features and reproducing realistic fine-scale
topological changes like Rayleigh-Plateau instabilities. This physics-inspired
surface tracking technique also opens the door for a unique coupling between surficial
finite element methods and volumetric finite difference methods, in order to simulate
liquid surface tension phenomena more efficiently than any previous method. Due
to its dramatic increase in computational resolution and efficiency, this method
yielded the first computer simulations of a fully developed crown splash with
droplet pinch off."
article_processing_charge: No
author:
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
citation:
ama: Wojtan C. Animating physical phenomena with embedded surface meshes. 2010:1-175.
apa: Wojtan, C. (2010). Animating physical phenomena with embedded surface meshes.
Georgia Institute of Technology.
chicago: Wojtan, Chris. “Animating Physical Phenomena with Embedded Surface Meshes.”
Georgia Institute of Technology, 2010.
ieee: C. Wojtan, “Animating physical phenomena with embedded surface meshes,” Georgia
Institute of Technology, 2010.
ista: Wojtan C. 2010. Animating physical phenomena with embedded surface meshes.
Georgia Institute of Technology.
mla: Wojtan, Chris. Animating Physical Phenomena with Embedded Surface Meshes.
Georgia Institute of Technology, 2010, pp. 1–175.
short: C. Wojtan, Animating Physical Phenomena with Embedded Surface Meshes, Georgia
Institute of Technology, 2010.
date_created: 2018-12-11T12:02:31Z
date_published: 2010-11-17T00:00:00Z
date_updated: 2023-02-23T11:21:00Z
day: '17'
extern: '1'
language:
- iso: eng
main_file_link:
- url: http://hdl.handle.net/1853/37256
month: '11'
oa_version: None
page: 1 - 175
publication_status: published
publisher: Georgia Institute of Technology
publist_id: '3345'
status: public
supervisor:
- first_name: Irfan
full_name: Essa, Irfan
last_name: Essa
- first_name: Karen
full_name: Liu, Karen
last_name: Liu
- first_name: Peter
full_name: Mucha, Peter
last_name: Mucha
- first_name: Jarek
full_name: Rossignac, Jarek
last_name: Rossignac
title: Animating physical phenomena with embedded surface meshes
type: dissertation
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
_id: '3303'
abstract:
- lang: eng
text: 'Biological traits result in part from interactions between different genetic
loci. This can lead to sign epistasis, in which a beneficial adaptation involves
a combination of individually deleterious or neutral mutations; in this case,
a population must cross a “fitness valley” to adapt. Recombination can assist
this process by combining mutations from different individuals or retard it by
breaking up the adaptive combination. Here, we analyze the simplest fitness valley,
in which an adaptation requires one mutation at each of two loci to provide a
fitness benefit. We present a theoretical analysis of the effect of recombination
on the valley-crossing process across the full spectrum of possible parameter
regimes. We find that low recombination rates can speed up valley crossing relative
to the asexual case, while higher recombination rates slow down valley crossing,
with the transition between the two regimes occurring when the recombination rate
between the loci is approximately equal to the selective advantage provided by
the adaptation. In large populations, if the recombination rate is high and selection
against single mutants is substantial, the time to cross the valley grows exponentially
with population size, effectively meaning that the population cannot acquire the
adaptation. Recombination at the optimal (low) rate can reduce the valley-crossing
time by up to several orders of magnitude relative to that in an asexual population. '
acknowledgement: "This work was supported in part by a Robert N. Noyce Stanford Graduate
Fellowship and European Research Council grant 250152 (to D.B.W.) and by National
Institutes of Health grant GM 28016 (to M.W.F.).\r\nWe thank Michael Desai for many
ideas and discussions and are grateful to Joanna Masel and an anonymous reviewer
for their helpful suggestions. "
author:
- first_name: Daniel
full_name: Weissman, Daniel
id: 2D0CE020-F248-11E8-B48F-1D18A9856A87
last_name: Weissman
- first_name: Marcus
full_name: Feldman, Marcus
last_name: Feldman
- first_name: Daniel
full_name: Fisher, Daniel
last_name: Fisher
citation:
ama: Weissman D, Feldman M, Fisher D. The rate of fitness-valley crossing in sexual
populations. Genetics. 2010;186(4):1389-1410. doi:10.1534/genetics.110.123240
apa: Weissman, D., Feldman, M., & Fisher, D. (2010). The rate of fitness-valley
crossing in sexual populations. Genetics. Genetics Society of America.
https://doi.org/10.1534/genetics.110.123240
chicago: Weissman, Daniel, Marcus Feldman, and Daniel Fisher. “The Rate of Fitness-Valley
Crossing in Sexual Populations.” Genetics. Genetics Society of America,
2010. https://doi.org/10.1534/genetics.110.123240.
ieee: D. Weissman, M. Feldman, and D. Fisher, “The rate of fitness-valley crossing
in sexual populations,” Genetics, vol. 186, no. 4. Genetics Society of
America, pp. 1389–1410, 2010.
ista: Weissman D, Feldman M, Fisher D. 2010. The rate of fitness-valley crossing
in sexual populations. Genetics. 186(4), 1389–1410.
mla: Weissman, Daniel, et al. “The Rate of Fitness-Valley Crossing in Sexual Populations.”
Genetics, vol. 186, no. 4, Genetics Society of America, 2010, pp. 1389–410,
doi:10.1534/genetics.110.123240.
short: D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.
date_created: 2018-12-11T12:02:33Z
date_published: 2010-12-01T00:00:00Z
date_updated: 2021-01-12T07:42:31Z
day: '01'
department:
- _id: NiBa
doi: 10.1534/genetics.110.123240
ec_funded: 1
intvolume: ' 186'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2998319/
month: '12'
oa: 1
oa_version: Submitted Version
page: 1389 - 1410
project:
- _id: 25B07788-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '250152'
name: Limits to selection in biology and in evolutionary computation
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '3337'
quality_controlled: '1'
scopus_import: 1
status: public
title: The rate of fitness-valley crossing in sexual populations
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 186
year: '2010'
...
---
_id: '3306'
abstract:
- lang: eng
text: We use methods from combinatorics and algebraic statistics to study analogues
of birth-and-death processes that have as their state space a finite subset of
the m-dimensional lattice and for which the m matrices that record the transition
probabilities in each of the lattice directions commute pairwise. One reason such
processes are of interest is that the transition matrix is straightforward to
diagonalize, and hence it is easy to compute n step transition probabilities.
The set of commuting birth-and-death processes decomposes as a union of toric
varieties, with the main component being the closure of all processes whose nearest
neighbor transition probabilities are positive. We exhibit an explicit monomial
parametrization for this main component, and we explore the boundary components
using primary decomposition.
acknowledgement: Steven N. Evans was supported in part by NSF Grants DMS-04-05778
and DMS-09-07630. Bernd Sturmfels was supported in part by NSF Grants DMS-04-56960
and DMS-07-57236. Caroline Uhler was supported by an International Fulbright Science
and Technology Fellowship.
author:
- first_name: Steven
full_name: Evans, Steven N
last_name: Evans
- first_name: Bernd
full_name: Sturmfels, Bernd
last_name: Sturmfels
- first_name: Caroline
full_name: Caroline Uhler
id: 49ADD78E-F248-11E8-B48F-1D18A9856A87
last_name: Uhler
orcid: 0000-0002-7008-0216
citation:
ama: Evans S, Sturmfels B, Uhler C. Commuting birth and death processes. The
Annals of Applied Probability. 2010;20:238-266. doi:10.1214/09-AAP615
apa: Evans, S., Sturmfels, B., & Uhler, C. (2010). Commuting birth and death
processes. The Annals of Applied Probability. Institute of Mathematical
Statistics. https://doi.org/10.1214/09-AAP615
chicago: Evans, Steven, Bernd Sturmfels, and Caroline Uhler. “Commuting Birth and
Death Processes.” The Annals of Applied Probability. Institute of Mathematical
Statistics, 2010. https://doi.org/10.1214/09-AAP615.
ieee: S. Evans, B. Sturmfels, and C. Uhler, “Commuting birth and death processes,”
The Annals of Applied Probability, vol. 20. Institute of Mathematical Statistics,
pp. 238–266, 2010.
ista: Evans S, Sturmfels B, Uhler C. 2010. Commuting birth and death processes.
The Annals of Applied Probability. 20, 238–266.
mla: Evans, Steven, et al. “Commuting Birth and Death Processes.” The Annals
of Applied Probability, vol. 20, Institute of Mathematical Statistics, 2010,
pp. 238–66, doi:10.1214/09-AAP615.
short: S. Evans, B. Sturmfels, C. Uhler, The Annals of Applied Probability 20 (2010)
238–266.
date_created: 2018-12-11T12:02:35Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2021-01-12T07:42:32Z
day: '01'
doi: 10.1214/09-AAP615
extern: 1
intvolume: ' 20'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0812.2724
month: '01'
oa: 1
page: 238 - 266
publication: The Annals of Applied Probability
publication_status: published
publisher: Institute of Mathematical Statistics
publist_id: '3334'
quality_controlled: 0
status: public
title: Commuting birth and death processes
type: journal_article
volume: 20
year: '2010'
...
---
_id: '3308'
abstract:
- lang: eng
text: We study multivariate normal models that are described by linear constraints
on the inverse of the covariance matrix. Maximum likelihood estimation for such
models leads to the problem of maximizing the determinant function over a spectrahedron,
and to the problem of characterizing the image of the positive definite cone under
an arbitrary linear projection. These problems at the interface of statistics
and optimization are here examined from the perspective of convex algebraic geometry.
acknowledgement: B. Sturmfels is supported in part by NSF grants DMS-0456960 and DMS-0757236.
C. Uhler is supported by an International Fulbright Science and Technology Fellowship.
author:
- first_name: Bernd
full_name: Sturmfels, Bernd
last_name: Sturmfels
- first_name: Caroline
full_name: Caroline Uhler
id: 49ADD78E-F248-11E8-B48F-1D18A9856A87
last_name: Uhler
orcid: 0000-0002-7008-0216
citation:
ama: Sturmfels B, Uhler C. Multivariate Gaussians, semidefinite matrix completion,
and convex algebraic geometry. Annals of the Institute of Statistical Mathematics.
2010;62(4):603-638. doi:10.1007/s10463-010-0295-4
apa: Sturmfels, B., & Uhler, C. (2010). Multivariate Gaussians, semidefinite
matrix completion, and convex algebraic geometry. Annals of the Institute of
Statistical Mathematics. Springer. https://doi.org/10.1007/s10463-010-0295-4
chicago: Sturmfels, Bernd, and Caroline Uhler. “Multivariate Gaussians, Semidefinite
Matrix Completion, and Convex Algebraic Geometry.” Annals of the Institute
of Statistical Mathematics. Springer, 2010. https://doi.org/10.1007/s10463-010-0295-4.
ieee: B. Sturmfels and C. Uhler, “Multivariate Gaussians, semidefinite matrix completion,
and convex algebraic geometry,” Annals of the Institute of Statistical Mathematics,
vol. 62, no. 4. Springer, pp. 603–638, 2010.
ista: Sturmfels B, Uhler C. 2010. Multivariate Gaussians, semidefinite matrix completion,
and convex algebraic geometry. Annals of the Institute of Statistical Mathematics.
62(4), 603–638.
mla: Sturmfels, Bernd, and Caroline Uhler. “Multivariate Gaussians, Semidefinite
Matrix Completion, and Convex Algebraic Geometry.” Annals of the Institute
of Statistical Mathematics, vol. 62, no. 4, Springer, 2010, pp. 603–38, doi:10.1007/s10463-010-0295-4.
short: B. Sturmfels, C. Uhler, Annals of the Institute of Statistical Mathematics
62 (2010) 603–638.
date_created: 2018-12-11T12:02:35Z
date_published: 2010-08-01T00:00:00Z
date_updated: 2021-01-12T07:42:33Z
day: '01'
doi: 10.1007/s10463-010-0295-4
extern: 1
intvolume: ' 62'
issue: '4'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0906.3529
month: '08'
oa: 1
page: 603 - 638
publication: Annals of the Institute of Statistical Mathematics
publication_status: published
publisher: Springer
publist_id: '3332'
quality_controlled: 0
status: public
title: Multivariate Gaussians, semidefinite matrix completion, and convex algebraic
geometry
type: journal_article
volume: 62
year: '2010'
...
---
_id: '3402'
abstract:
- lang: eng
text: Model checking transactional memories (TMs) is difficult because of the unbounded
number, length, and delay of concurrent transactions, as well as the unbounded
size of the memory. We show that, under certain conditions satisfied by most TMs
we know of, the model checking problem can be reduced to a finite-state problem,
and we illustrate the use of the method by proving the correctness of several
TMs, including two-phase locking, DSTM, and TL2. The safety properties we consider
include strict serializability and opacity; the liveness properties include obstruction
freedom, livelock freedom, and wait freedom. Our main contribution lies in the
structure of the proofs, which are largely automated and not restricted to the
TMs mentioned above. In a first step we show that every TM that enjoys certain
structural properties either violates a requirement on some program with two threads
and two shared variables, or satisfies the requirement on all programs. In the
second step, we use a model checker to prove the requirement for the TM applied
to a most general program with two threads and two variables. In the safety case,
the model checker checks language inclusion between two finite-state transition
systems, a nondeterministic transition system representing the given TM applied
to a most general program, and a deterministic transition system representing
a most liberal safe TM applied to the same program. The given TM transition system
is nondeterministic because a TM can be used with different contention managers,
which resolve conflicts differently. In the liveness case, the model checker analyzes
fairness conditions on the given TM transition system.
acknowledgement: This research was supported by the Swiss National Science Foundation.
This paper is an extended and revised version of our previous work on model checking
transactional memories.
author:
- first_name: Rachid
full_name: Guerraoui, Rachid
last_name: Guerraoui
- first_name: Thomas A
full_name: Thomas Henzinger
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Vasu
full_name: Vasu Singh
id: 4DAE2708-F248-11E8-B48F-1D18A9856A87
last_name: Singh
citation:
ama: Guerraoui R, Henzinger TA, Singh V. Model checking transactional memories.
Distributed Computing. 2010;22(3):129-145. doi:10.1007/s00446-009-0092-6
apa: Guerraoui, R., Henzinger, T. A., & Singh, V. (2010). Model checking transactional
memories. Distributed Computing. Springer. https://doi.org/10.1007/s00446-009-0092-6
chicago: Guerraoui, Rachid, Thomas A Henzinger, and Vasu Singh. “Model Checking
Transactional Memories.” Distributed Computing. Springer, 2010. https://doi.org/10.1007/s00446-009-0092-6.
ieee: R. Guerraoui, T. A. Henzinger, and V. Singh, “Model checking transactional
memories,” Distributed Computing, vol. 22, no. 3. Springer, pp. 129–145,
2010.
ista: Guerraoui R, Henzinger TA, Singh V. 2010. Model checking transactional memories.
Distributed Computing. 22(3), 129–145.
mla: Guerraoui, Rachid, et al. “Model Checking Transactional Memories.” Distributed
Computing, vol. 22, no. 3, Springer, 2010, pp. 129–45, doi:10.1007/s00446-009-0092-6.
short: R. Guerraoui, T.A. Henzinger, V. Singh, Distributed Computing 22 (2010) 129–145.
date_created: 2018-12-11T12:03:08Z
date_published: 2010-03-01T00:00:00Z
date_updated: 2021-01-12T07:43:14Z
day: '01'
doi: 10.1007/s00446-009-0092-6
extern: 1
intvolume: ' 22'
issue: '3'
main_file_link:
- open_access: '0'
url: http://infoscience.epfl.ch/record/117513/files/PLDI_paper.pdf
month: '03'
page: 129 - 145
publication: Distributed Computing
publication_status: published
publisher: Springer
publist_id: '3000'
pubrep_id: '74'
quality_controlled: 0
status: public
title: Model checking transactional memories
type: journal_article
volume: 22
year: '2010'
...
---
_id: '3403'
abstract:
- lang: eng
text: Rate remapping is a conjunctive code that potentially enables hippocampal
place cells to jointly represent spatial and nonspatial information. In this issue
of Neuron, Rennó-Costa et al. introduce a theoretical model wherein the convergence
of the medial and lateral entorhinal excitatory inputs, combined with local inhibition,
explains hippocampal rate remapping. © 2010 Elsevier Inc.
author:
- first_name: Barty
full_name: Pleydell-Bouverie, Barty
last_name: Pleydell Bouverie
- first_name: Jozsef L
full_name: Jozsef Csicsvari
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
citation:
ama: 'Pleydell Bouverie B, Csicsvari JL. Rate remapping: When the code goes beyond
space (preview). Neuron. 2010;68(6):1015-1016. doi:10.1016/j.neuron.2010.12.011'
apa: 'Pleydell Bouverie, B., & Csicsvari, J. L. (2010). Rate remapping: When
the code goes beyond space (preview). Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2010.12.011'
chicago: 'Pleydell Bouverie, Barty, and Jozsef L Csicsvari. “Rate Remapping: When
the Code Goes beyond Space (Preview).” Neuron. Elsevier, 2010. https://doi.org/10.1016/j.neuron.2010.12.011.'
ieee: 'B. Pleydell Bouverie and J. L. Csicsvari, “Rate remapping: When the code
goes beyond space (preview),” Neuron, vol. 68, no. 6. Elsevier, pp. 1015–1016,
2010.'
ista: 'Pleydell Bouverie B, Csicsvari JL. 2010. Rate remapping: When the code goes
beyond space (preview). Neuron. 68(6), 1015–1016.'
mla: 'Pleydell Bouverie, Barty, and Jozsef L. Csicsvari. “Rate Remapping: When the
Code Goes beyond Space (Preview).” Neuron, vol. 68, no. 6, Elsevier, 2010,
pp. 1015–16, doi:10.1016/j.neuron.2010.12.011.'
short: B. Pleydell Bouverie, J.L. Csicsvari, Neuron 68 (2010) 1015–1016.
date_created: 2018-12-11T12:03:08Z
date_published: 2010-12-22T00:00:00Z
date_updated: 2019-05-10T12:19:51Z
day: '22'
doi: 10.1016/j.neuron.2010.12.011
extern: 1
intvolume: ' 68'
issue: '6'
month: '12'
page: 1015 - 1016
publication: Neuron
publication_status: published
publisher: Elsevier
publist_id: '2999'
quality_controlled: 0
status: public
title: 'Rate remapping: When the code goes beyond space (preview)'
type: review
volume: 68
year: '2010'
...
---
_id: '3406'
abstract:
- lang: eng
text: The impact of structural biology on the design of ligands (agonists, antagonists
and modulators) for ionotropic glutamate receptors is reviewed.
author:
- first_name: Philipp
full_name: Stawski, Philipp
last_name: Stawski
- first_name: Harald L
full_name: Harald Janovjak
id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
last_name: Janovjak
orcid: 0000-0002-8023-9315
- first_name: Dirk
full_name: Trauner, Dirk
last_name: Trauner
citation:
ama: 'Stawski P, Janovjak HL, Trauner D. Pharmacology of ionotropic glutamate receptors:
a structural perspective. Bioorganic and Medicinal Chemistry. 2010;18(22):7759-7772.
doi:10.1016/j.bmc.2010.09.012'
apa: 'Stawski, P., Janovjak, H. L., & Trauner, D. (2010). Pharmacology of ionotropic
glutamate receptors: a structural perspective. Bioorganic and Medicinal Chemistry.
Elsevier. https://doi.org/10.1016/j.bmc.2010.09.012'
chicago: 'Stawski, Philipp, Harald L Janovjak, and Dirk Trauner. “Pharmacology of
Ionotropic Glutamate Receptors: A Structural Perspective.” Bioorganic and Medicinal
Chemistry. Elsevier, 2010. https://doi.org/10.1016/j.bmc.2010.09.012.'
ieee: 'P. Stawski, H. L. Janovjak, and D. Trauner, “Pharmacology of ionotropic glutamate
receptors: a structural perspective,” Bioorganic and Medicinal Chemistry,
vol. 18, no. 22. Elsevier, pp. 7759–7772, 2010.'
ista: 'Stawski P, Janovjak HL, Trauner D. 2010. Pharmacology of ionotropic glutamate
receptors: a structural perspective. Bioorganic and Medicinal Chemistry. 18(22),
7759–7772.'
mla: 'Stawski, Philipp, et al. “Pharmacology of Ionotropic Glutamate Receptors:
A Structural Perspective.” Bioorganic and Medicinal Chemistry, vol. 18,
no. 22, Elsevier, 2010, pp. 7759–72, doi:10.1016/j.bmc.2010.09.012.'
short: P. Stawski, H.L. Janovjak, D. Trauner, Bioorganic and Medicinal Chemistry
18 (2010) 7759–7772.
date_created: 2018-12-11T12:03:10Z
date_published: 2010-11-15T00:00:00Z
date_updated: 2019-04-26T07:22:27Z
day: '15'
doi: 10.1016/j.bmc.2010.09.012
extern: 1
intvolume: ' 18'
issue: '22'
month: '11'
page: 7759 - 7772
publication: Bioorganic and Medicinal Chemistry
publication_status: published
publisher: Elsevier
publist_id: '2996'
quality_controlled: 0
status: public
title: 'Pharmacology of ionotropic glutamate receptors: a structural perspective'
type: review
volume: 18
year: '2010'
...
---
_id: '3407'
abstract:
- lang: eng
text: Genetically targeted light-activated ion channels and pumps make it possible
to determine the role of specific neurons in neuronal circuits, information processing
and behavior. We developed a K+-selective ionotropic glutamate receptor that reversibly
inhibits neuronal activity in response to light in dissociated neurons and brain
slice and also reversibly suppresses behavior in zebrafish. The receptor is a
chimera of the pore region of a K+-selective bacterial glutamate receptor and
the ligand-binding domain of a light-gated mammalian kainate receptor. This hyperpolarizing
light-gated channel, HyLighter, is turned on by a brief light pulse at one wavelength
and turned off by a pulse at a second wavelength. The control is obtained at moderate
intensity. After optical activation, the photocurrent and optical silencing of
activity persists in the dark for extended periods. The low light requirement
and bi-stability of HyLighter represent advantages for the dissection of neural
circuitry.
author:
- first_name: Harald L
full_name: Harald Janovjak
id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
last_name: Janovjak
orcid: 0000-0002-8023-9315
- first_name: Stephanie
full_name: Szobota, Stephanie
last_name: Szobota
- first_name: Claire
full_name: Wyart, Claire
last_name: Wyart
- first_name: Dirk
full_name: Trauner, Dirk
last_name: Trauner
- first_name: Ehud
full_name: Isacoff, Ehud Y
last_name: Isacoff
citation:
ama: Janovjak HL, Szobota S, Wyart C, Trauner D, Isacoff E. A light-gated, potassium-selective
glutamate receptor for the optical inhibition of neuronal firing. Nature Neuroscience.
2010;13:1027-1032. doi:10.1038/nn.2589
apa: Janovjak, H. L., Szobota, S., Wyart, C., Trauner, D., & Isacoff, E. (2010).
A light-gated, potassium-selective glutamate receptor for the optical inhibition
of neuronal firing. Nature Neuroscience. Nature Publishing Group. https://doi.org/10.1038/nn.2589
chicago: Janovjak, Harald L, Stephanie Szobota, Claire Wyart, Dirk Trauner, and
Ehud Isacoff. “A Light-Gated, Potassium-Selective Glutamate Receptor for the Optical
Inhibition of Neuronal Firing.” Nature Neuroscience. Nature Publishing
Group, 2010. https://doi.org/10.1038/nn.2589.
ieee: H. L. Janovjak, S. Szobota, C. Wyart, D. Trauner, and E. Isacoff, “A light-gated,
potassium-selective glutamate receptor for the optical inhibition of neuronal
firing,” Nature Neuroscience, vol. 13. Nature Publishing Group, pp. 1027–1032,
2010.
ista: Janovjak HL, Szobota S, Wyart C, Trauner D, Isacoff E. 2010. A light-gated,
potassium-selective glutamate receptor for the optical inhibition of neuronal
firing. Nature Neuroscience. 13, 1027–1032.
mla: Janovjak, Harald L., et al. “A Light-Gated, Potassium-Selective Glutamate Receptor
for the Optical Inhibition of Neuronal Firing.” Nature Neuroscience, vol.
13, Nature Publishing Group, 2010, pp. 1027–32, doi:10.1038/nn.2589.
short: H.L. Janovjak, S. Szobota, C. Wyart, D. Trauner, E. Isacoff, Nature Neuroscience
13 (2010) 1027–1032.
date_created: 2018-12-11T12:03:10Z
date_published: 2010-06-27T00:00:00Z
date_updated: 2021-01-12T07:43:16Z
day: '27'
doi: 10.1038/nn.2589
extern: 1
intvolume: ' 13'
month: '06'
page: 1027 - 1032
publication: Nature Neuroscience
publication_status: published
publisher: Nature Publishing Group
publist_id: '2995'
quality_controlled: 0
status: public
title: A light-gated, potassium-selective glutamate receptor for the optical inhibition
of neuronal firing
type: journal_article
volume: 13
year: '2010'
...
---
_id: '3430'
abstract:
- lang: eng
text: These are notes for a set of 7 two-hour lectures given at the 2010 Summer
School on Quantitative Evolutionary and Comparative Genomics at OIST, Okinawa,
Japan. The emphasis is on understanding how biological systems process information.
We take a physicist's approach of looking for simple phenomenological descriptions
that can address the questions of biological function without necessarily modeling
all (mostly unknown) microscopic details; the example that is developed throughout
the notes is transcriptional regulation in genetic regulatory networks. We present
tools from information theory and statistical physics that can be used to analyze
noisy nonlinear biological networks, and build generative and predictive models
of regulatory processes.
author:
- first_name: Gasper
full_name: Gasper Tkacik
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
citation:
ama: 'Tkačik G. Lecture notes for 2010 summer school on Quantitative Evolutionary
and Comparative Genomics. In: Elsevier; 2010.'
apa: Tkačik, G. (2010). Lecture notes for 2010 summer school on Quantitative Evolutionary
and Comparative Genomics. Presented at the Summer School on Quantitative Evolutionary
and Comparative Genomics, Elsevier.
chicago: Tkačik, Gašper. “Lecture Notes for 2010 Summer School on Quantitative Evolutionary
and Comparative Genomics.” Elsevier, 2010.
ieee: G. Tkačik, “Lecture notes for 2010 summer school on Quantitative Evolutionary
and Comparative Genomics,” presented at the Summer School on Quantitative Evolutionary
and Comparative Genomics, 2010.
ista: Tkačik G. 2010. Lecture notes for 2010 summer school on Quantitative Evolutionary
and Comparative Genomics. Summer School on Quantitative Evolutionary and Comparative
Genomics.
mla: Tkačik, Gašper. Lecture Notes for 2010 Summer School on Quantitative Evolutionary
and Comparative Genomics. Elsevier, 2010.
short: G. Tkačik, in:, Elsevier, 2010.
conference:
name: Summer School on Quantitative Evolutionary and Comparative Genomics
date_created: 2018-12-11T12:03:17Z
date_published: 2010-06-22T00:00:00Z
date_updated: 2021-01-12T07:43:25Z
day: '22'
extern: 1
main_file_link:
- open_access: '1'
url: http://arxiv.org/pdf/1006.4291
month: '06'
oa: 1
publication_status: published
publisher: Elsevier
publist_id: '2970'
quality_controlled: 0
status: public
title: Lecture notes for 2010 summer school on Quantitative Evolutionary and Comparative
Genomics
type: conference
year: '2010'
...
---
_id: '3441'
abstract:
- lang: eng
text: The hippocampus is an important brain circuit for spatial memory and the spatially
selective spiking of hippocampal neuronal assemblies is thought to provide a mnemonic
representation of space. We found that remembering newly learnt goal locations
required NMDA receptorĝ€"dependent stabilization and enhanced reactivation
of goal-related hippocampal assemblies. During spatial learning, place-related
firing patterns in the CA1, but not CA3, region of the rat hippocampus were reorganized
to represent new goal locations. Such reorganization did not occur when goals
were marked by visual cues. The stabilization and successful retrieval of these
newly acquired CA1 representations of behaviorally relevant places was NMDAR dependent
and necessary for subsequent memory retention performance. Goal-related assembly
patterns associated with sharp wave/ripple network oscillations, during both learning
and subsequent rest periods, predicted memory performance. Together, these results
suggest that the reorganization and reactivation of assembly firing patterns in
the hippocampus represent the formation and expression of new spatial memory traces.
© 2010 Nature America, Inc. All rights reserved.
acknowledgement: |
Discussed in the News and Views section of the journal by Jeffery and Cacucci
author:
- first_name: David
full_name: Dupret, David
last_name: Dupret
- first_name: Joseph
full_name: Joseph O'Neill
id: 426376DC-F248-11E8-B48F-1D18A9856A87
last_name: O'Neill
- first_name: Barty
full_name: Pleydell-Bouverie, Barty
last_name: Pleydell Bouverie
- first_name: Jozsef L
full_name: Jozsef Csicsvari
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
citation:
ama: Dupret D, O’Neill J, Pleydell Bouverie B, Csicsvari JL. The reorganization
and reactivation of hippocampal maps predict spatial memory performance. Nature
Neuroscience. 2010;13(8):995-1002. doi:10.1038/nn.2599
apa: Dupret, D., O’Neill, J., Pleydell Bouverie, B., & Csicsvari, J. L. (2010).
The reorganization and reactivation of hippocampal maps predict spatial memory
performance. Nature Neuroscience. Nature Publishing Group. https://doi.org/10.1038/nn.2599
chicago: Dupret, David, Joseph O’Neill, Barty Pleydell Bouverie, and Jozsef L Csicsvari.
“The Reorganization and Reactivation of Hippocampal Maps Predict Spatial Memory
Performance.” Nature Neuroscience. Nature Publishing Group, 2010. https://doi.org/10.1038/nn.2599.
ieee: D. Dupret, J. O’Neill, B. Pleydell Bouverie, and J. L. Csicsvari, “The reorganization
and reactivation of hippocampal maps predict spatial memory performance,” Nature
Neuroscience, vol. 13, no. 8. Nature Publishing Group, pp. 995–1002, 2010.
ista: Dupret D, O’Neill J, Pleydell Bouverie B, Csicsvari JL. 2010. The reorganization
and reactivation of hippocampal maps predict spatial memory performance. Nature
Neuroscience. 13(8), 995–1002.
mla: Dupret, David, et al. “The Reorganization and Reactivation of Hippocampal Maps
Predict Spatial Memory Performance.” Nature Neuroscience, vol. 13, no.
8, Nature Publishing Group, 2010, pp. 995–1002, doi:10.1038/nn.2599.
short: D. Dupret, J. O’Neill, B. Pleydell Bouverie, J.L. Csicsvari, Nature Neuroscience
13 (2010) 995–1002.
date_created: 2018-12-11T12:03:21Z
date_published: 2010-08-01T00:00:00Z
date_updated: 2021-01-12T07:43:29Z
day: '01'
doi: 10.1038/nn.2599
extern: 1
intvolume: ' 13'
issue: '8'
month: '08'
page: 995 - 1002
publication: Nature Neuroscience
publication_status: published
publisher: Nature Publishing Group
publist_id: '2946'
quality_controlled: 0
status: public
title: The reorganization and reactivation of hippocampal maps predict spatial memory
performance
type: journal_article
volume: 13
year: '2010'
...
---
_id: '3442'
abstract:
- lang: eng
text: Episodic and spatial memories each involve the encoding of complex associations
in hippocampal neuronal circuits. Such memory traces could be stabilised from
short- to long-term forms by consolidation processes involving the 'reactivation'
of the original network firing patterns during sleep and rest. Waking experience
can be replayed in many different brain areas, but an important role for the hippocampus
lies in the organisation of the 'reactivation' process. Emerging evidence suggests
that sharp wave/ripple (SWR) events in the hippocampus could coordinate the reactivation
of memory traces and direct their reinstatement in cortical circuits. Although
the mechanisms remain uncertain, there is a growing consensus that such SWR-directed
reactivation of brain-wide memory traces could underlie memory consolidation.
© 2010 Elsevier Ltd.
author:
- first_name: Joseph
full_name: Joseph O'Neill
id: 426376DC-F248-11E8-B48F-1D18A9856A87
last_name: O'Neill
- first_name: Barty
full_name: Pleydell-Bouverie, Barty
last_name: Pleydell Bouverie
- first_name: David
full_name: Dupret, David
last_name: Dupret
- first_name: Jozsef L
full_name: Jozsef Csicsvari
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
citation:
ama: 'O’Neill J, Pleydell Bouverie B, Dupret D, Csicsvari JL. Play it again: reactivation
of waking experience and memory. Trends in Neurosciences. 2010;33(5):220-229.
doi:10.1016/j.tins.2010.01.006'
apa: 'O’Neill, J., Pleydell Bouverie, B., Dupret, D., & Csicsvari, J. L. (2010).
Play it again: reactivation of waking experience and memory. Trends in Neurosciences.
Elsevier. https://doi.org/10.1016/j.tins.2010.01.006'
chicago: 'O’Neill, Joseph, Barty Pleydell Bouverie, David Dupret, and Jozsef L Csicsvari.
“Play It Again: Reactivation of Waking Experience and Memory.” Trends in Neurosciences.
Elsevier, 2010. https://doi.org/10.1016/j.tins.2010.01.006.'
ieee: 'J. O’Neill, B. Pleydell Bouverie, D. Dupret, and J. L. Csicsvari, “Play it
again: reactivation of waking experience and memory,” Trends in Neurosciences,
vol. 33, no. 5. Elsevier, pp. 220–229, 2010.'
ista: 'O’Neill J, Pleydell Bouverie B, Dupret D, Csicsvari JL. 2010. Play it again:
reactivation of waking experience and memory. Trends in Neurosciences. 33(5),
220–229.'
mla: 'O’Neill, Joseph, et al. “Play It Again: Reactivation of Waking Experience
and Memory.” Trends in Neurosciences, vol. 33, no. 5, Elsevier, 2010, pp.
220–29, doi:10.1016/j.tins.2010.01.006.'
short: J. O’Neill, B. Pleydell Bouverie, D. Dupret, J.L. Csicsvari, Trends in Neurosciences
33 (2010) 220–229.
date_created: 2018-12-11T12:03:21Z
date_published: 2010-05-01T00:00:00Z
date_updated: 2021-01-12T07:43:29Z
day: '01'
doi: 10.1016/j.tins.2010.01.006
extern: 1
intvolume: ' 33'
issue: '5'
month: '05'
page: 220 - 229
publication: Trends in Neurosciences
publication_status: published
publisher: Elsevier
publist_id: '2945'
quality_controlled: 0
status: public
title: 'Play it again: reactivation of waking experience and memory'
type: journal_article
volume: 33
year: '2010'
...
---
_id: '3459'
author:
- first_name: Bernd
full_name: Fakler, Bernd
last_name: Fakler
- first_name: Peter M
full_name: Peter Jonas
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: 'Fakler B, Jonas PM. Grundlagen zellulärer Erregbarkeit. In: Schmidt R, Heckmann
M, Lang F, eds. Physiologie Des Menschen. Springer; 2010.'
apa: Fakler, B., & Jonas, P. M. (2010). Grundlagen zellulärer Erregbarkeit.
In R. Schmidt, M. Heckmann, & F. Lang (Eds.), Physiologie Des Menschen.
Springer.
chicago: Fakler, Bernd, and Peter M Jonas. “Grundlagen Zellulärer Erregbarkeit.”
In Physiologie Des Menschen, edited by R. Schmidt, M. Heckmann, and Florian
Lang. Springer, 2010.
ieee: B. Fakler and P. M. Jonas, “Grundlagen zellulärer Erregbarkeit,” in Physiologie
Des Menschen, R. Schmidt, M. Heckmann, and F. Lang, Eds. Springer, 2010.
ista: 'Fakler B, Jonas PM. 2010.Grundlagen zellulärer Erregbarkeit. In: Physiologie
Des Menschen. .'
mla: Fakler, Bernd, and Peter M. Jonas. “Grundlagen Zellulärer Erregbarkeit.” Physiologie
Des Menschen, edited by R. Schmidt et al., Springer, 2010.
short: B. Fakler, P.M. Jonas, in:, R. Schmidt, M. Heckmann, F. Lang (Eds.), Physiologie
Des Menschen, Springer, 2010.
date_created: 2018-12-11T12:03:26Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2021-01-12T07:43:35Z
day: '01'
editor:
- first_name: R.
full_name: Schmidt, R. F.
last_name: Schmidt
- first_name: M.
full_name: Heckmann, M.
last_name: Heckmann
- first_name: Florian
full_name: Lang, Florian
last_name: Lang
extern: 1
month: '01'
publication: Physiologie Des Menschen
publication_status: published
publisher: Springer
publist_id: '2928'
quality_controlled: 0
status: public
title: Grundlagen zellulärer Erregbarkeit
type: book_chapter
year: '2010'
...
---
_id: '3498'
abstract:
- lang: eng
text: "Purpose\r\nCalcifying tendinitis is a common condition of the shoulder. In
many cases, arthroscopic reduction in the deposit is indicated. The localization
of the deposit is sometimes challenging and time-consuming. Pre-operative ultrasound
(US)-guided needle placement in the deposit and pre-operative US marking of the
deposit at the skin with a ballpoint are described and recommended methods to
alleviate the procedure without using ionizing radiation by fluoroscopy.\r\nMethods\r\nIntra-operative
sonography of the shoulder is introduced as a new method to localize the calcific
deposit with high accuracy. After standard arthroscopic buresectomy, the surgeon
performs an ultrasound examination under sterile conditions to localize the deposits.
A ventral longitudinal US section is recommended, and the upper arm is rotated
until the deposit is visible. Subsequently, perpendicular to the skin at the position
of the transducer, a needle is introduced under arthroscopic and ultrasound visualization
to puncture the deposit.\r\nResults\r\nThe presence of snow-white crystals at
the tip of the needle proves the exact localization. Consecutively, the curettage
can be accomplished. Another intra-operative sonography evaluates possible calcific
remnants and the tendon structure.\r\nConclusion\r\nThis new technique may alleviate
arthroscopic calcific deposit curettage by visualizing the deposit without using
ionizing radiation. Additionally, soft tissue damage due to decreased number of
punctures to detect the deposit may be achieved. Both factors may contribute to
reduced operation time."
author:
- first_name: M.
full_name: Sabeti Aschraf, M.
last_name: Sabeti Aschraf
- first_name: C.
full_name: Gonano, C.
last_name: Gonano
- first_name: E.
full_name: Nemecek, E.
last_name: Nemecek
- first_name: Lisa
full_name: Cichocki, Lisa
id: 3BC78B60-F248-11E8-B48F-1D18A9856A87
last_name: Cichocki
- first_name: C.
full_name: Schueller Weidekamm, C.
last_name: Schueller Weidekamm
citation:
ama: Sabeti Aschraf M, Gonano C, Nemecek E, Cichocki L, Schueller Weidekamm C. Intra-operative
ultrasound facilitates the localization of the calcific deposit during arthroscopic
treatment of calcifying tendinitis. Knee Surgery, Sports Traumatology, Arthroscopy.
2010;18(12):1792-1794. doi:10.1007/s00167-010-1227-9
apa: Sabeti Aschraf, M., Gonano, C., Nemecek, E., Cichocki, L., & Schueller
Weidekamm, C. (2010). Intra-operative ultrasound facilitates the localization
of the calcific deposit during arthroscopic treatment of calcifying tendinitis.
Knee Surgery, Sports Traumatology, Arthroscopy. Springer. https://doi.org/10.1007/s00167-010-1227-9
chicago: Sabeti Aschraf, M., C. Gonano, E. Nemecek, Lisa Cichocki, and C. Schueller
Weidekamm. “Intra-Operative Ultrasound Facilitates the Localization of the Calcific
Deposit during Arthroscopic Treatment of Calcifying Tendinitis.” Knee Surgery,
Sports Traumatology, Arthroscopy. Springer, 2010. https://doi.org/10.1007/s00167-010-1227-9.
ieee: M. Sabeti Aschraf, C. Gonano, E. Nemecek, L. Cichocki, and C. Schueller Weidekamm,
“Intra-operative ultrasound facilitates the localization of the calcific deposit
during arthroscopic treatment of calcifying tendinitis,” Knee Surgery, Sports
Traumatology, Arthroscopy, vol. 18, no. 12. Springer, pp. 1792–1794, 2010.
ista: Sabeti Aschraf M, Gonano C, Nemecek E, Cichocki L, Schueller Weidekamm C.
2010. Intra-operative ultrasound facilitates the localization of the calcific
deposit during arthroscopic treatment of calcifying tendinitis. Knee Surgery,
Sports Traumatology, Arthroscopy. 18(12), 1792–1794.
mla: Sabeti Aschraf, M., et al. “Intra-Operative Ultrasound Facilitates the Localization
of the Calcific Deposit during Arthroscopic Treatment of Calcifying Tendinitis.”
Knee Surgery, Sports Traumatology, Arthroscopy, vol. 18, no. 12, Springer,
2010, pp. 1792–94, doi:10.1007/s00167-010-1227-9.
short: M. Sabeti Aschraf, C. Gonano, E. Nemecek, L. Cichocki, C. Schueller Weidekamm,
Knee Surgery, Sports Traumatology, Arthroscopy 18 (2010) 1792–1794.
date_created: 2018-12-11T12:03:39Z
date_published: 2010-08-20T00:00:00Z
date_updated: 2021-01-12T07:43:51Z
day: '20'
doi: 10.1007/s00167-010-1227-9
intvolume: ' 18'
issue: '12'
language:
- iso: eng
month: '08'
oa_version: None
page: 1792 - 1794
publication: Knee Surgery, Sports Traumatology, Arthroscopy
publication_status: published
publisher: Springer
publist_id: '2889'
quality_controlled: '1'
scopus_import: 1
status: public
title: Intra-operative ultrasound facilitates the localization of the calcific deposit
during arthroscopic treatment of calcifying tendinitis
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2010'
...
---
_id: '3538'
abstract:
- lang: eng
text: How seizures start is a major question in epilepsy research. Preictal EEG
changes occur in both human patients and animal models, but their underlying mechanisms
and relationship with seizure initiation remain unknown. Here we demonstrate the
existence, in the hippocampal CA1 region, of a preictal state characterized by
the progressive and global increase in neuronal activity associated with a widespread
buildup of low-amplitude high-frequency activity (HFA) (> 100 Hz) and reduction
in system complexity. HFA is generated by the firing of neurons, mainly pyramidal
cells, at much lower frequencies. Individual cycles of HFA are generated by the
near-synchronous (within similar to 5 ms) firing of small numbers of pyramidal
cells. The presence of HFA in the low-calcium model implicates nonsynaptic synchronization;
the presence of very similar HFA in the high-potassium model shows that it does
not depend on an absence of synaptic transmission. Immediately before seizure
onset, CA1 is in a state of high sensitivity in which weak depolarizing or synchronizing
perturbations can trigger seizures. Transition to seizure is characterized by
a rapid expansion and fusion of the neuronal populations responsible for HFA,
associated with a progressive slowing of HFA, leading to a single, massive, hypersynchronous
cluster generating the high-amplitude low-frequency activity of the seizure.
author:
- first_name: Premysl
full_name: Jiruska, Premysl
last_name: Jiruska
- first_name: Jozsef L
full_name: Csicsvari, Jozsef L
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
- first_name: Andrew
full_name: Powell, Andrew
last_name: Powell
- first_name: John
full_name: Fox, John
last_name: Fox
- first_name: Wei
full_name: Chang, Wei
last_name: Chang
- first_name: Martin
full_name: Vreugdenhil, Martin
last_name: Vreugdenhil
- first_name: Xiaoli
full_name: Li, Xiaoli
last_name: Li
- first_name: Milan
full_name: Palus, Milan
last_name: Palus
- first_name: Alejandro
full_name: Bujan, Alejandro
last_name: Bujan
- first_name: Richard
full_name: Dearden, Richard
last_name: Dearden
- first_name: John
full_name: Jefferys, John
last_name: Jefferys
citation:
ama: Jiruska P, Csicsvari JL, Powell A, et al. High-frequency network activity,
global increase in neuronal activity, and synchrony expansion precede epileptic
seizures in vitro. Journal of Neuroscience. 2010;30(16):5690-5701. doi:10.1523/JNEUROSCI.0535-10.2010
apa: Jiruska, P., Csicsvari, J. L., Powell, A., Fox, J., Chang, W., Vreugdenhil,
M., … Jefferys, J. (2010). High-frequency network activity, global increase in
neuronal activity, and synchrony expansion precede epileptic seizures in vitro.
Journal of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.0535-10.2010
chicago: Jiruska, Premysl, Jozsef L Csicsvari, Andrew Powell, John Fox, Wei Chang,
Martin Vreugdenhil, Xiaoli Li, et al. “High-Frequency Network Activity, Global
Increase in Neuronal Activity, and Synchrony Expansion Precede Epileptic Seizures
in Vitro.” Journal of Neuroscience. Society for Neuroscience, 2010. https://doi.org/10.1523/JNEUROSCI.0535-10.2010.
ieee: P. Jiruska et al., “High-frequency network activity, global increase
in neuronal activity, and synchrony expansion precede epileptic seizures in vitro,”
Journal of Neuroscience, vol. 30, no. 16. Society for Neuroscience, pp.
5690–5701, 2010.
ista: Jiruska P, Csicsvari JL, Powell A, Fox J, Chang W, Vreugdenhil M, Li X, Palus
M, Bujan A, Dearden R, Jefferys J. 2010. High-frequency network activity, global
increase in neuronal activity, and synchrony expansion precede epileptic seizures
in vitro. Journal of Neuroscience. 30(16), 5690–5701.
mla: Jiruska, Premysl, et al. “High-Frequency Network Activity, Global Increase
in Neuronal Activity, and Synchrony Expansion Precede Epileptic Seizures in Vitro.”
Journal of Neuroscience, vol. 30, no. 16, Society for Neuroscience, 2010,
pp. 5690–701, doi:10.1523/JNEUROSCI.0535-10.2010.
short: P. Jiruska, J.L. Csicsvari, A. Powell, J. Fox, W. Chang, M. Vreugdenhil,
X. Li, M. Palus, A. Bujan, R. Dearden, J. Jefferys, Journal of Neuroscience 30
(2010) 5690–5701.
date_created: 2018-12-11T12:03:51Z
date_published: 2010-04-21T00:00:00Z
date_updated: 2021-01-12T07:44:10Z
day: '21'
doi: 10.1523/JNEUROSCI.0535-10.2010
extern: '1'
intvolume: ' 30'
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://www.jneurosci.org/content/30/16/5690
month: '04'
oa: 1
oa_version: None
page: 5690 - 5701
publication: Journal of Neuroscience
publication_status: published
publisher: Society for Neuroscience
publist_id: '2848'
quality_controlled: '1'
status: public
title: High-frequency network activity, global increase in neuronal activity, and
synchrony expansion precede epileptic seizures in vitro
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 30
year: '2010'
...
---
_id: '3592'
abstract:
- lang: eng
text: The zebrafish is a favorite model organism to study tissue morphogenesis during
development at a subcellular level. This largely results from the fact that zebrafish
embryos are transparent and thus accessible to various imaging techniques, such
as confocal and two-photon excitation (2PE) microscopy. In particular, 2PE microscopy
has been shown to be useful for imaging deep cell layers within the embryo and
following tissue morphogenesis over long periods. This chapter describes how to
use 2PE microscopy to study morphogenetic movements during early zebrafish embryonic
development, providing a general blueprint for its use in zebrafish.
article_processing_charge: No
author:
- first_name: Lara
full_name: Carvalho, Lara
last_name: Carvalho
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
citation:
ama: Carvalho L, Heisenberg C-PJ. Imaging zebrafish embryos by two-photon excitation
time-lapse microscopy. Methods in Molecular Biology. 2010;546(Part 5):273-287.
doi:10.1007/978-1-60327-977-2_17
apa: Carvalho, L., & Heisenberg, C.-P. J. (2010). Imaging zebrafish embryos
by two-photon excitation time-lapse microscopy. Methods in Molecular Biology.
Springer. https://doi.org/10.1007/978-1-60327-977-2_17
chicago: Carvalho, Lara, and Carl-Philipp J Heisenberg. “Imaging Zebrafish Embryos
by Two-Photon Excitation Time-Lapse Microscopy.” Methods in Molecular Biology.
Springer, 2010. https://doi.org/10.1007/978-1-60327-977-2_17.
ieee: L. Carvalho and C.-P. J. Heisenberg, “Imaging zebrafish embryos by two-photon
excitation time-lapse microscopy,” Methods in Molecular Biology, vol. 546,
no. Part 5. Springer, pp. 273–287, 2010.
ista: Carvalho L, Heisenberg C-PJ. 2010. Imaging zebrafish embryos by two-photon
excitation time-lapse microscopy. Methods in Molecular Biology. 546(Part 5), 273–287.
mla: Carvalho, Lara, and Carl-Philipp J. Heisenberg. “Imaging Zebrafish Embryos
by Two-Photon Excitation Time-Lapse Microscopy.” Methods in Molecular Biology,
vol. 546, no. Part 5, Springer, 2010, pp. 273–87, doi:10.1007/978-1-60327-977-2_17.
short: L. Carvalho, C.-P.J. Heisenberg, Methods in Molecular Biology 546 (2010)
273–287.
date_created: 2018-12-11T12:04:08Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2021-01-12T07:44:31Z
day: '01'
doi: 10.1007/978-1-60327-977-2_17
extern: '1'
intvolume: ' 546'
issue: Part 5
language:
- iso: eng
month: '01'
oa_version: None
page: 273 - 287
publication: Methods in Molecular Biology
publication_status: published
publisher: Springer
publist_id: '2791'
status: public
title: Imaging zebrafish embryos by two-photon excitation time-lapse microscopy
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 546
year: '2010'
...