---
_id: '1465'
abstract:
- lang: eng
text: We prove a generating function formula for the Betti numbers of Nakajima quiver
varieties. We prove that it is a q-deformation of the Weyl-Kac character formula.
In particular this implies that the constant term of the polynomial counting the
number of absolutely indecomposable representations of a quiver equals the multiplicity
of a certain weight in the corresponding Kac-Moody algebra, which was conjectured
by Kac in 1982.
acknowledgement: This work has been supported by a Royal Society University Research
Fellowship, NSF grants DMS-0305505 and DMS-0604775 and an Alfred Sloan Fellowship
2005-2007.
author:
- first_name: Tamas
full_name: Tamas Hausel
id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
last_name: Hausel
citation:
ama: Hausel T. Kac’s conjecture from Nakajima quiver varieties. Inventiones Mathematicae.
2010;181(1):21-37. doi:10.1007/s00222-010-0241-3
apa: Hausel, T. (2010). Kac’s conjecture from Nakajima quiver varieties. Inventiones
Mathematicae. Springer. https://doi.org/10.1007/s00222-010-0241-3
chicago: Hausel, Tamás. “Kac’s Conjecture from Nakajima Quiver Varieties.” Inventiones
Mathematicae. Springer, 2010. https://doi.org/10.1007/s00222-010-0241-3.
ieee: T. Hausel, “Kac’s conjecture from Nakajima quiver varieties,” Inventiones
Mathematicae, vol. 181, no. 1. Springer, pp. 21–37, 2010.
ista: Hausel T. 2010. Kac’s conjecture from Nakajima quiver varieties. Inventiones
Mathematicae. 181(1), 21–37.
mla: Hausel, Tamás. “Kac’s Conjecture from Nakajima Quiver Varieties.” Inventiones
Mathematicae, vol. 181, no. 1, Springer, 2010, pp. 21–37, doi:10.1007/s00222-010-0241-3.
short: T. Hausel, Inventiones Mathematicae 181 (2010) 21–37.
date_created: 2018-12-11T11:52:11Z
date_published: 2010-07-01T00:00:00Z
date_updated: 2021-01-12T06:50:56Z
day: '01'
doi: 10.1007/s00222-010-0241-3
extern: 1
intvolume: ' 181'
issue: '1'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0811.1569
month: '07'
oa: 1
page: 21 - 37
publication: Inventiones Mathematicae
publication_status: published
publisher: Springer
publist_id: '5730'
quality_controlled: 0
status: public
title: Kac's conjecture from Nakajima quiver varieties
type: journal_article
volume: 181
year: '2010'
...
---
_id: '1466'
abstract:
- lang: eng
text: In Hausel et al. (2008) [10] we presented a conjecture generalizing the Cauchy
formula for Macdonald polynomial. This conjecture encodes the mixed Hodge polynomials
of the character varieties of representations of the fundamental group of a punctured
Riemann surface of genus g. We proved several results which support this conjecture.
Here we announce new results which are consequences of those in Hausel et al.
(2008) [10].
author:
- first_name: Tamas
full_name: Tamas Hausel
id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
last_name: Hausel
- first_name: Emmanuel
full_name: Letellier, Emmanuel
last_name: Letellier
- first_name: Fernando
full_name: Rodríguez Villegas, Fernando
last_name: Rodríguez Villegas
citation:
ama: Hausel T, Letellier E, Rodríguez Villegas F. Topology of character varieties
and representations of quivers. Comptes Rendus Mathematique. 2010;348(3-4):131-135.
doi:10.1016/j.crma.2010.01.025
apa: Hausel, T., Letellier, E., & Rodríguez Villegas, F. (2010). Topology of
character varieties and representations of quivers. Comptes Rendus Mathematique.
Elsevier. https://doi.org/10.1016/j.crma.2010.01.025
chicago: Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Topology
of Character Varieties and Representations of Quivers.” Comptes Rendus Mathematique.
Elsevier, 2010. https://doi.org/10.1016/j.crma.2010.01.025.
ieee: T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Topology of character
varieties and representations of quivers,” Comptes Rendus Mathematique,
vol. 348, no. 3–4. Elsevier, pp. 131–135, 2010.
ista: Hausel T, Letellier E, Rodríguez Villegas F. 2010. Topology of character varieties
and representations of quivers. Comptes Rendus Mathematique. 348(3–4), 131–135.
mla: Hausel, Tamás, et al. “Topology of Character Varieties and Representations
of Quivers.” Comptes Rendus Mathematique, vol. 348, no. 3–4, Elsevier,
2010, pp. 131–35, doi:10.1016/j.crma.2010.01.025.
short: T. Hausel, E. Letellier, F. Rodríguez Villegas, Comptes Rendus Mathematique
348 (2010) 131–135.
date_created: 2018-12-11T11:52:11Z
date_published: 2010-02-01T00:00:00Z
date_updated: 2021-01-12T06:50:56Z
day: '01'
doi: 10.1016/j.crma.2010.01.025
extern: 1
intvolume: ' 348'
issue: 3-4
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0905.3491
month: '02'
oa: 1
page: 131 - 135
publication: Comptes Rendus Mathematique
publication_status: published
publisher: Elsevier
publist_id: '5731'
quality_controlled: 0
status: public
title: Topology of character varieties and representations of quivers
type: journal_article
volume: 348
year: '2010'
...
---
_id: '1468'
abstract:
- lang: eng
text: 'This chapter surveys the motivations, related results, and progress made
towards the following problem, raised by Hitchin in 1995: What is the space of
L2 harmonic forms on the moduli space of Higgs bundles on a Riemann surface?'
author:
- first_name: Tamas
full_name: Tamas Hausel
id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
last_name: Hausel
citation:
ama: 'Hausel T. S-Duality in HyperkäHler Hodge Theory. In: The Many Facets of
Geometry: A Tribute to Nigel Hitchin. Oxford University Press; 2010. doi:10.1093/acprof:oso/9780199534920.003.0016'
apa: 'Hausel, T. (2010). S-Duality in HyperkäHler Hodge Theory. In The Many Facets
of Geometry: A Tribute to Nigel Hitchin. Oxford University Press. https://doi.org/10.1093/acprof:oso/9780199534920.003.0016'
chicago: 'Hausel, Tamás. “S-Duality in HyperkäHler Hodge Theory.” In The Many
Facets of Geometry: A Tribute to Nigel Hitchin. Oxford University Press, 2010.
https://doi.org/10.1093/acprof:oso/9780199534920.003.0016.'
ieee: 'T. Hausel, “S-Duality in HyperkäHler Hodge Theory,” in The Many Facets
of Geometry: A Tribute to Nigel Hitchin, Oxford University Press, 2010.'
ista: 'Hausel T. 2010.S-Duality in HyperkäHler Hodge Theory. In: The Many Facets
of Geometry: A Tribute to Nigel Hitchin. .'
mla: 'Hausel, Tamás. “S-Duality in HyperkäHler Hodge Theory.” The Many Facets
of Geometry: A Tribute to Nigel Hitchin, Oxford University Press, 2010, doi:10.1093/acprof:oso/9780199534920.003.0016.'
short: 'T. Hausel, in:, The Many Facets of Geometry: A Tribute to Nigel Hitchin,
Oxford University Press, 2010.'
date_created: 2018-12-11T11:52:12Z
date_published: 2010-09-01T00:00:00Z
date_updated: 2021-01-12T06:50:57Z
day: '01'
doi: 10.1093/acprof:oso/9780199534920.003.0016
extern: 1
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0709.0504
month: '09'
oa: 1
publication: 'The Many Facets of Geometry: A Tribute to Nigel Hitchin'
publication_status: published
publisher: Oxford University Press
publist_id: '5729'
quality_controlled: 0
status: public
title: S-Duality in HyperkäHler Hodge Theory
type: book_chapter
year: '2010'
...
---
_id: '14983'
abstract:
- lang: eng
text: 'This chapter tackles a difficult challenge: presenting signal processing
material to non-experts. This chapter is meant to be comprehensible to people
who have some math background, including a course in linear algebra and basic
statistics, but do not specialize in mathematics, engineering, or related fields.
Some formulas assume the reader is familiar with matrices and basic matrix operations,
but not more advanced material. Furthermore, we tried to make the chapter readable
even if you skip the formulas. Nevertheless, we include some simple methods to
demonstrate the basics of adaptive data processing, then we proceed with some
advanced methods that are fundamental in adaptive signal processing, and are likely
to be useful in a variety of applications. The advanced algorithms are also online
available [30]. In the second part, these techniques are applied to some real-world
BCI data.'
acknowledgement: This work was supported by the EU grants “BrainCom” (FP6-2004-Mobility-5
Grant No 024259) and “Multi-adaptive BCI” (MEIF-CT-2006 Grant No 040666). Furthermore,
we thank Matthias Krauledat for fruitful discussions and tools for generating Fig.
5.
alternative_title:
- The Frontiers Collection
article_processing_charge: No
author:
- first_name: Alois
full_name: Schlögl, Alois
id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
last_name: Schlögl
orcid: 0000-0002-5621-8100
- first_name: Carmen
full_name: Vidaurre, Carmen
last_name: Vidaurre
- first_name: Klaus-Robert
full_name: Müller, Klaus-Robert
last_name: Müller
citation:
ama: 'Schlögl A, Vidaurre C, Müller K-R. Adaptive Methods in BCI Research - An Introductory
Tutorial. In: Graimann B, Pfurtscheller G, Allison B, eds. Brain-Computer Interfaces.
1st ed. FRONTCOLL. Berlin, Heidelberg: Springer; 2010:331-355. doi:10.1007/978-3-642-02091-9_18'
apa: 'Schlögl, A., Vidaurre, C., & Müller, K.-R. (2010). Adaptive Methods in
BCI Research - An Introductory Tutorial. In B. Graimann, G. Pfurtscheller, &
B. Allison (Eds.), Brain-Computer Interfaces (1st ed., pp. 331–355). Berlin,
Heidelberg: Springer. https://doi.org/10.1007/978-3-642-02091-9_18'
chicago: 'Schlögl, Alois, Carmen Vidaurre, and Klaus-Robert Müller. “Adaptive Methods
in BCI Research - An Introductory Tutorial.” In Brain-Computer Interfaces,
edited by Bernhard Graimann, Gert Pfurtscheller, and Brendan Allison, 1st ed.,
331–55. FRONTCOLL. Berlin, Heidelberg: Springer, 2010. https://doi.org/10.1007/978-3-642-02091-9_18.'
ieee: 'A. Schlögl, C. Vidaurre, and K.-R. Müller, “Adaptive Methods in BCI Research
- An Introductory Tutorial,” in Brain-Computer Interfaces, 1st ed., B.
Graimann, G. Pfurtscheller, and B. Allison, Eds. Berlin, Heidelberg: Springer,
2010, pp. 331–355.'
ista: 'Schlögl A, Vidaurre C, Müller K-R. 2010.Adaptive Methods in BCI Research
- An Introductory Tutorial. In: Brain-Computer Interfaces. The Frontiers Collection,
, 331–355.'
mla: Schlögl, Alois, et al. “Adaptive Methods in BCI Research - An Introductory
Tutorial.” Brain-Computer Interfaces, edited by Bernhard Graimann et al.,
1st ed., Springer, 2010, pp. 331–55, doi:10.1007/978-3-642-02091-9_18.
short: A. Schlögl, C. Vidaurre, K.-R. Müller, in:, B. Graimann, G. Pfurtscheller,
B. Allison (Eds.), Brain-Computer Interfaces, 1st ed., Springer, Berlin, Heidelberg,
2010, pp. 331–355.
date_created: 2024-02-14T09:56:00Z
date_published: 2010-09-06T00:00:00Z
date_updated: 2024-02-19T09:47:25Z
day: '06'
department:
- _id: ScienComp
doi: 10.1007/978-3-642-02091-9_18
edition: '1'
editor:
- first_name: Bernhard
full_name: Graimann, Bernhard
last_name: Graimann
- first_name: Gert
full_name: Pfurtscheller, Gert
last_name: Pfurtscheller
- first_name: Brendan
full_name: Allison, Brendan
last_name: Allison
language:
- iso: eng
month: '09'
oa_version: None
page: 331-355
place: Berlin, Heidelberg
publication: Brain-Computer Interfaces
publication_identifier:
eisbn:
- '9783642020919'
isbn:
- '9783642020902'
issn:
- 1612-3018
publication_status: published
publisher: Springer
quality_controlled: '1'
series_title: FRONTCOLL
status: public
title: Adaptive Methods in BCI Research - An Introductory Tutorial
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
_id: '13409'
abstract:
- lang: eng
text: The immobilization of molecular switches onto inorganic supports has recently
become a hot topic as it can give rise to novel hybrid materials in which the
properties of the two components are mutually enhanced. Even more attractive is
the concept of “transferring” the switchable characteristics of single layers
of organic molecules onto the underlying inorganic components, rendering them
responsive to external stimuli as well. Of the various molecular switches studied,
azobenzene (AB) has arguably attracted most attention due to its simple molecular
structure, and because its “trigger” (light) is a noninvasive one, it can be delivered
instantaneously, and into a precise location. In order to fully realize its potential,
however, it is necessary to immobilize AB onto solid supports. It is the goal
of this manuscript to comprehensively yet concisely review such hybrid systems
which comprise AB forming well-defined self-assembled monolayers (SAMs) on planar
and curved (colloidal and nanoporous) inorganic surfaces. I discuss methods to
immobilize AB derivatives onto surfaces, strategies to ensure efficient AB isomerization,
ways to monitor the switching process, properties of these switchable hybrid materials,
and, last but not least, their emerging applications.
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
citation:
ama: Klajn R. Immobilized azobenzenes for the construction of photoresponsive materials.
Pure and Applied Chemistry. 2010;82(12):2247-2279. doi:10.1351/pac-con-10-09-04
apa: Klajn, R. (2010). Immobilized azobenzenes for the construction of photoresponsive
materials. Pure and Applied Chemistry. De Gruyter. https://doi.org/10.1351/pac-con-10-09-04
chicago: Klajn, Rafal. “Immobilized Azobenzenes for the Construction of Photoresponsive
Materials.” Pure and Applied Chemistry. De Gruyter, 2010. https://doi.org/10.1351/pac-con-10-09-04.
ieee: R. Klajn, “Immobilized azobenzenes for the construction of photoresponsive
materials,” Pure and Applied Chemistry, vol. 82, no. 12. De Gruyter, pp.
2247–2279, 2010.
ista: Klajn R. 2010. Immobilized azobenzenes for the construction of photoresponsive
materials. Pure and Applied Chemistry. 82(12), 2247–2279.
mla: Klajn, Rafal. “Immobilized Azobenzenes for the Construction of Photoresponsive
Materials.” Pure and Applied Chemistry, vol. 82, no. 12, De Gruyter, 2010,
pp. 2247–79, doi:10.1351/pac-con-10-09-04.
short: R. Klajn, Pure and Applied Chemistry 82 (2010) 2247–2279.
date_created: 2023-08-01T09:48:11Z
date_published: 2010-10-15T00:00:00Z
date_updated: 2023-08-08T07:58:13Z
day: '15'
doi: 10.1351/pac-con-10-09-04
extern: '1'
intvolume: ' 82'
issue: '12'
keyword:
- General Chemical Engineering
- General Chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1351/pac-con-10-09-04
month: '10'
oa: 1
oa_version: Published Version
page: 2247-2279
publication: Pure and Applied Chemistry
publication_identifier:
eissn:
- 1365-3075
issn:
- 0033-4545
publication_status: published
publisher: De Gruyter
quality_controlled: '1'
scopus_import: '1'
status: public
title: Immobilized azobenzenes for the construction of photoresponsive materials
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 82
year: '2010'
...
---
_id: '13410'
abstract:
- lang: eng
text: A range (Au, Pt, Pd) of metal nanoparticles (MNPs) has been prepared and functionalized
with (a) redox-active stalks containing tetrathiafulvalene (TTF) units, (b) [2]pseudorotaxanes
formed between these stalks and cyclobis(paraquat-p-phenylene) (CBPQT4+) rings,
and (c) bistable [2]rotaxane molecules where the dumbbell component contains a
1,5-dioxynaphthalene (DNP) unit, as well as a TTF unit, encircled by a CBPQT4+
ring. It transpires that the molecules present in (a) and (c) and the supermolecules
described in (b) retain their switching characteristics, previously observed in
solution, when they are immobilized onto MNPs. Moreover, their oxidation potentials
depend on the fraction, χ, of the molecules or supermolecules on the surface of
the nanoparticles. A variation in χ affects the oxidation potentials of the TTF
units to the extent that switching can be subjected to fine tuning as a result.
Specifically, increasing χ results in positive shifts (i) in the oxidation potentials
of the TTF unit in (a)−(c) and (ii) the reduction potentials of the CBPQT4+ rings
in (c). These shifts can be attributed to an increase in the electrostatic potential
surrounding the MNPs. Both the magnitude and the direction of these shifts are
reproduced by a model, based on the Poisson−Boltzmann equation coupled with charge-regulating
boundary conditions. Furthermore, the kinetics of relaxation from the metastable
state coconformation (MSCC) to the ground-state coconformation (GSCC) of the bistable
[2]rotaxane molecules also depends on χ, as well as on the nanoparticle diameter.
Increasing either of these parameters accelerates the rate of relaxation from
the MSCC to the GSCC. This rate is a function of (i) the activation energy for
the relaxation process associated with the bistable [2]rotaxane molecules in solution
and (ii) the electrostatic potential surrounding the MNPs. The electrostatic potential
depends on (i) the diameter of the MNPs, (ii) the amount of the bistable [2]rotaxane
molecules on the surface of the MNPs, and (iii) the equilibrium distribution of
the CBPQT4+ rings between the DNP and TTF recognition sites in the GSCC. This
electrostatic potential has also been quantified using the Poisson−Boltzmann equation,
leading to faithful estimates of the rate constants.
article_processing_charge: No
article_type: original
author:
- first_name: Ali
full_name: Coskun, Ali
last_name: Coskun
- first_name: Paul J.
full_name: Wesson, Paul J.
last_name: Wesson
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
- first_name: Ali
full_name: Trabolsi, Ali
last_name: Trabolsi
- first_name: Lei
full_name: Fang, Lei
last_name: Fang
- first_name: Mark A.
full_name: Olson, Mark A.
last_name: Olson
- first_name: Sanjeev K.
full_name: Dey, Sanjeev K.
last_name: Dey
- first_name: Bartosz A.
full_name: Grzybowski, Bartosz A.
last_name: Grzybowski
- first_name: J. Fraser
full_name: Stoddart, J. Fraser
last_name: Stoddart
citation:
ama: 'Coskun A, Wesson PJ, Klajn R, et al. Molecular-mechanical switching at the
nanoparticle−solvent interface: Practice and theory. Journal of the American
Chemical Society. 2010;132(12):4310-4320. doi:10.1021/ja9102327'
apa: 'Coskun, A., Wesson, P. J., Klajn, R., Trabolsi, A., Fang, L., Olson, M. A.,
… Stoddart, J. F. (2010). Molecular-mechanical switching at the nanoparticle−solvent
interface: Practice and theory. Journal of the American Chemical Society.
American Chemical Society. https://doi.org/10.1021/ja9102327'
chicago: 'Coskun, Ali, Paul J. Wesson, Rafal Klajn, Ali Trabolsi, Lei Fang, Mark
A. Olson, Sanjeev K. Dey, Bartosz A. Grzybowski, and J. Fraser Stoddart. “Molecular-Mechanical
Switching at the Nanoparticle−solvent Interface: Practice and Theory.” Journal
of the American Chemical Society. American Chemical Society, 2010. https://doi.org/10.1021/ja9102327.'
ieee: 'A. Coskun et al., “Molecular-mechanical switching at the nanoparticle−solvent
interface: Practice and theory,” Journal of the American Chemical Society,
vol. 132, no. 12. American Chemical Society, pp. 4310–4320, 2010.'
ista: 'Coskun A, Wesson PJ, Klajn R, Trabolsi A, Fang L, Olson MA, Dey SK, Grzybowski
BA, Stoddart JF. 2010. Molecular-mechanical switching at the nanoparticle−solvent
interface: Practice and theory. Journal of the American Chemical Society. 132(12),
4310–4320.'
mla: 'Coskun, Ali, et al. “Molecular-Mechanical Switching at the Nanoparticle−solvent
Interface: Practice and Theory.” Journal of the American Chemical Society,
vol. 132, no. 12, American Chemical Society, 2010, pp. 4310–20, doi:10.1021/ja9102327.'
short: A. Coskun, P.J. Wesson, R. Klajn, A. Trabolsi, L. Fang, M.A. Olson, S.K.
Dey, B.A. Grzybowski, J.F. Stoddart, Journal of the American Chemical Society
132 (2010) 4310–4320.
date_created: 2023-08-01T09:48:27Z
date_published: 2010-03-31T00:00:00Z
date_updated: 2023-08-08T08:00:31Z
day: '31'
doi: 10.1021/ja9102327
extern: '1'
external_id:
pmid:
- '20218598'
intvolume: ' 132'
issue: '12'
keyword:
- Colloid and Surface Chemistry
- Biochemistry
- General Chemistry
- Catalysis
language:
- iso: eng
month: '03'
oa_version: None
page: 4310-4320
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
eissn:
- 1520-5126
issn:
- 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Molecular-mechanical switching at the nanoparticle−solvent interface: Practice
and theory'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 132
year: '2010'
...
---
_id: '13411'
abstract:
- lang: eng
text: Photoresponsive gold nanoparticles dispersed in a solid/frozen matrix provide
a basis for sensors that “remember” whether the sample has ever exceeded the melting
temperature of the matrix. The operation of these sensors rests on the ability
to photoinduce metastable electric dipoles on NP surfaces – upon melting, these
dipoles drive NP aggregation, precipitation, and crosslinking. These events are
manifested by a pronounced color change.
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
- first_name: Kevin P.
full_name: Browne, Kevin P.
last_name: Browne
- first_name: Siowling
full_name: Soh, Siowling
last_name: Soh
- first_name: Bartosz A.
full_name: Grzybowski, Bartosz A.
last_name: Grzybowski
citation:
ama: Klajn R, Browne KP, Soh S, Grzybowski BA. Nanoparticles that “remember” temperature.
Small. 2010;6(13):1385-1387. doi:10.1002/smll.200902272
apa: Klajn, R., Browne, K. P., Soh, S., & Grzybowski, B. A. (2010). Nanoparticles
that “remember” temperature. Small. Wiley. https://doi.org/10.1002/smll.200902272
chicago: Klajn, Rafal, Kevin P. Browne, Siowling Soh, and Bartosz A. Grzybowski.
“Nanoparticles That ‘Remember’ Temperature.” Small. Wiley, 2010. https://doi.org/10.1002/smll.200902272.
ieee: R. Klajn, K. P. Browne, S. Soh, and B. A. Grzybowski, “Nanoparticles that
‘remember’ temperature,” Small, vol. 6, no. 13. Wiley, pp. 1385–1387, 2010.
ista: Klajn R, Browne KP, Soh S, Grzybowski BA. 2010. Nanoparticles that “remember”
temperature. Small. 6(13), 1385–1387.
mla: Klajn, Rafal, et al. “Nanoparticles That ‘Remember’ Temperature.” Small,
vol. 6, no. 13, Wiley, 2010, pp. 1385–87, doi:10.1002/smll.200902272.
short: R. Klajn, K.P. Browne, S. Soh, B.A. Grzybowski, Small 6 (2010) 1385–1387.
date_created: 2023-08-01T09:48:38Z
date_published: 2010-07-05T00:00:00Z
date_updated: 2023-08-08T08:15:25Z
day: '05'
doi: 10.1002/smll.200902272
extern: '1'
external_id:
pmid:
- '20521264'
intvolume: ' 6'
issue: '13'
keyword:
- Biomaterials
- Biotechnology
- General Materials Science
- General Chemistry
language:
- iso: eng
month: '07'
oa_version: None
page: 1385-1387
pmid: 1
publication: Small
publication_identifier:
eissn:
- 1613-6829
issn:
- 1613-6810
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nanoparticles that “remember” temperature
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2010'
...
---
_id: '13412'
abstract:
- lang: eng
text: Nanoparticles (NPs) and molecular/supramolecular switches have attracted considerable
interest during the past decade on account of their unique properties and prominent
roles in the fields of organic chemistry and materials science. Materials derived
from the combination of these two components are now emerging in the literature.
This critical review evaluates materials which comprise NPs functionalised with
well-defined self-assembled monolayers of molecular and supramolecular switches.
We draw attention to the fact that immobilisation of switches on NPs does not,
in general, hamper their switching ability, although it can impart new properties
on the supporting particles. This premise leads us to the discussion of systems
in which switching on the surfaces of NPs can be used to modulate reversibly a
range of NP properties—optical, fluorescent, electrical, magnetic—as well as the
controlled release of small molecules. Finally, we discuss examples in which molecular
switches direct reversible self-assembly of NPs (308 references).
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
- first_name: J. Fraser
full_name: Stoddart, J. Fraser
last_name: Stoddart
- first_name: Bartosz A.
full_name: Grzybowski, Bartosz A.
last_name: Grzybowski
citation:
ama: Klajn R, Stoddart JF, Grzybowski BA. Nanoparticles functionalised with reversible
molecular and supramolecular switches. Chemical Society Reviews. 2010;39(6):2203-2237.
doi:10.1039/b920377j
apa: Klajn, R., Stoddart, J. F., & Grzybowski, B. A. (2010). Nanoparticles functionalised
with reversible molecular and supramolecular switches. Chemical Society Reviews.
Royal Society of Chemistry. https://doi.org/10.1039/b920377j
chicago: Klajn, Rafal, J. Fraser Stoddart, and Bartosz A. Grzybowski. “Nanoparticles
Functionalised with Reversible Molecular and Supramolecular Switches.” Chemical
Society Reviews. Royal Society of Chemistry, 2010. https://doi.org/10.1039/b920377j.
ieee: R. Klajn, J. F. Stoddart, and B. A. Grzybowski, “Nanoparticles functionalised
with reversible molecular and supramolecular switches,” Chemical Society Reviews,
vol. 39, no. 6. Royal Society of Chemistry, pp. 2203–2237, 2010.
ista: Klajn R, Stoddart JF, Grzybowski BA. 2010. Nanoparticles functionalised with
reversible molecular and supramolecular switches. Chemical Society Reviews. 39(6),
2203–2237.
mla: Klajn, Rafal, et al. “Nanoparticles Functionalised with Reversible Molecular
and Supramolecular Switches.” Chemical Society Reviews, vol. 39, no. 6,
Royal Society of Chemistry, 2010, pp. 2203–37, doi:10.1039/b920377j.
short: R. Klajn, J.F. Stoddart, B.A. Grzybowski, Chemical Society Reviews 39 (2010)
2203–2237.
date_created: 2023-08-01T09:49:07Z
date_published: 2010-04-21T00:00:00Z
date_updated: 2023-08-08T08:19:00Z
day: '21'
doi: 10.1039/b920377j
extern: '1'
external_id:
pmid:
- '20407689'
intvolume: ' 39'
issue: '6'
keyword:
- General Chemistry
language:
- iso: eng
month: '04'
oa_version: None
page: 2203-2237
pmid: 1
publication: Chemical Society Reviews
publication_identifier:
eissn:
- 1460-4744
issn:
- 0306-0012
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nanoparticles functionalised with reversible molecular and supramolecular switches
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 39
year: '2010'
...
---
_id: '901'
abstract:
- lang: eng
text: 'Background: Surveying deleterious variation in human populations is crucial
for our understanding, diagnosis and potential treatment of human genetic pathologies.
A number of recent genome-wide analyses focused on the prevalence of segregating
deleterious alleles in the nuclear genome. However, such studies have not been
conducted for the mitochondrial genome.Results: We present a systematic survey
of polymorphisms in the human mitochondrial genome, including those predicted
to be deleterious and those that correspond to known pathogenic mutations. Analyzing
4458 completely sequenced mitochondrial genomes we characterize the genetic diversity
of different types of single nucleotide polymorphisms (SNPs) in African (L haplotypes)
and non-African (M and N haplotypes) populations. We find that the overall level
of polymorphism is higher in the mitochondrial compared to the nuclear genome,
although the mitochondrial genome appears to be under stronger selection as indicated
by proportionally fewer nonsynonymous than synonymous substitutions. The African
mitochondrial genomes show higher heterozygosity, a greater number of polymorphic
sites and higher frequencies of polymorphisms for synonymous, benign and damaging
polymorphism than non-African genomes. However, African genomes carry significantly
fewer SNPs that have been previously characterized as pathogenic compared to non-African
genomes.Conclusions: Finding SNPs classified as pathogenic to be the only category
of polymorphisms that are more abundant in non-African genomes is best explained
by a systematic ascertainment bias that favours the discovery of pathogenic polymorphisms
segregating in non-African populations. This further suggests that, contrary to
the common disease-common variant hypothesis, pathogenic mutations are largely
population-specific and different SNPs may be associated with the same disease
in different populations. Therefore, to obtain a comprehensive picture of the
deleterious variability in the human population, as well as to improve the diagnostics
of individuals carrying African mitochondrial haplotypes, it is necessary to survey
different populations independently.Reviewers: This article was reviewed by Dr
Mikhail Gelfand, Dr Vasily Ramensky (nominated by Dr Eugene Koonin) and Dr David
Rand (nominated by Dr Laurence Hurst).'
acknowledgement: We thank Ivan Adzhubei and Shamil Sunyaev for extensive assistance
with PolyPhen 2 and insightful discussion. We thank the Spanish Ministry of Science
and Innovation, Plan Nacional Program grant BFU2009-09271 for funding.
author:
- first_name: Michael
full_name: Breen, Michael S
last_name: Breen
- first_name: Fyodor
full_name: Fyodor Kondrashov
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
citation:
ama: Breen M, Kondrashov F. Mitochondrial pathogenic mutations are population-specific.
Biology Direct. 2010;5. doi:10.1186/1745-6150-5-68
apa: Breen, M., & Kondrashov, F. (2010). Mitochondrial pathogenic mutations
are population-specific. Biology Direct. BioMed Central. https://doi.org/10.1186/1745-6150-5-68
chicago: Breen, Michael, and Fyodor Kondrashov. “Mitochondrial Pathogenic Mutations
Are Population-Specific.” Biology Direct. BioMed Central, 2010. https://doi.org/10.1186/1745-6150-5-68.
ieee: M. Breen and F. Kondrashov, “Mitochondrial pathogenic mutations are population-specific,”
Biology Direct, vol. 5. BioMed Central, 2010.
ista: Breen M, Kondrashov F. 2010. Mitochondrial pathogenic mutations are population-specific.
Biology Direct. 5.
mla: Breen, Michael, and Fyodor Kondrashov. “Mitochondrial Pathogenic Mutations
Are Population-Specific.” Biology Direct, vol. 5, BioMed Central, 2010,
doi:10.1186/1745-6150-5-68.
short: M. Breen, F. Kondrashov, Biology Direct 5 (2010).
date_created: 2018-12-11T11:49:06Z
date_published: 2010-12-31T00:00:00Z
date_updated: 2021-01-12T08:21:46Z
day: '31'
doi: 10.1186/1745-6150-5-68
extern: 1
intvolume: ' 5'
month: '12'
publication: Biology Direct
publication_status: published
publisher: BioMed Central
publist_id: '6749'
quality_controlled: 0
status: public
title: Mitochondrial pathogenic mutations are population-specific
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
volume: 5
year: '2010'
...
---
_id: '9012'
abstract:
- lang: eng
text: In this Letter, we characterize experimentally the diffusiophoretic motion
of colloids and λ-DNA toward higher concentration of solutes, using microfluidic
technology to build spatially and temporally controlled concentration gradients.
We then demonstrate that segregation and spatial patterning of the particles can
be achieved from temporal variations of the solute concentration profile. This
segregation takes the form of a strong trapping potential, stemming from an osmotically
induced rectification mechanism of the solute time-dependent variations. Depending
on the spatial and temporal symmetry of the solute signal, localization patterns
with various shapes can be achieved. These results highlight the role of solute
contrasts in out-of-equilibrium processes occurring in soft matter.
article_number: '138302'
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Jérémie A
full_name: Palacci, Jérémie A
id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
last_name: Palacci
orcid: 0000-0002-7253-9465
- first_name: Benjamin
full_name: Abécassis, Benjamin
last_name: Abécassis
- first_name: Cécile
full_name: Cottin-Bizonne, Cécile
last_name: Cottin-Bizonne
- first_name: Christophe
full_name: Ybert, Christophe
last_name: Ybert
- first_name: Lydéric
full_name: Bocquet, Lydéric
last_name: Bocquet
citation:
ama: Palacci JA, Abécassis B, Cottin-Bizonne C, Ybert C, Bocquet L. Colloidal motility
and pattern formation under rectified diffusiophoresis. Physical Review Letters.
2010;104(13). doi:10.1103/physrevlett.104.138302
apa: Palacci, J. A., Abécassis, B., Cottin-Bizonne, C., Ybert, C., & Bocquet,
L. (2010). Colloidal motility and pattern formation under rectified diffusiophoresis.
Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.104.138302
chicago: Palacci, Jérémie A, Benjamin Abécassis, Cécile Cottin-Bizonne, Christophe
Ybert, and Lydéric Bocquet. “Colloidal Motility and Pattern Formation under Rectified
Diffusiophoresis.” Physical Review Letters. American Physical Society,
2010. https://doi.org/10.1103/physrevlett.104.138302.
ieee: J. A. Palacci, B. Abécassis, C. Cottin-Bizonne, C. Ybert, and L. Bocquet,
“Colloidal motility and pattern formation under rectified diffusiophoresis,” Physical
Review Letters, vol. 104, no. 13. American Physical Society, 2010.
ista: Palacci JA, Abécassis B, Cottin-Bizonne C, Ybert C, Bocquet L. 2010. Colloidal
motility and pattern formation under rectified diffusiophoresis. Physical Review
Letters. 104(13), 138302.
mla: Palacci, Jérémie A., et al. “Colloidal Motility and Pattern Formation under
Rectified Diffusiophoresis.” Physical Review Letters, vol. 104, no. 13,
138302, American Physical Society, 2010, doi:10.1103/physrevlett.104.138302.
short: J.A. Palacci, B. Abécassis, C. Cottin-Bizonne, C. Ybert, L. Bocquet, Physical
Review Letters 104 (2010).
date_created: 2021-01-19T10:25:04Z
date_published: 2010-04-02T00:00:00Z
date_updated: 2023-02-23T13:46:40Z
day: '02'
doi: 10.1103/physrevlett.104.138302
extern: '1'
external_id:
arxiv:
- '1004.1256 '
pmid:
- '20481918'
intvolume: ' 104'
issue: '13'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1004.1256
month: '04'
oa: 1
oa_version: Preprint
pmid: 1
publication: Physical Review Letters
publication_identifier:
eissn:
- '10797114'
issn:
- '00319007'
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Colloidal motility and pattern formation under rectified diffusiophoresis
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 104
year: '2010'
...
---
_id: '9013'
abstract:
- lang: eng
text: In this Letter, we investigate experimentally the nonequilibrium steady state
of an active colloidal suspension under gravity field. The active particles are
made of chemically powered colloids, showing self propulsion in the presence of
an added fuel, here hydrogen peroxide. The active suspension is studied in a dedicated
microfluidic device, made of permeable gel microstructures. Both the microdynamics
of individual colloids and the global stationary state of the suspension under
gravity are measured with optical microscopy. This yields a direct measurement
of the effective temperature of the active system as a function of the particle
activity, on the basis of the fluctuation-dissipation relationship. Our work is
a first step in the experimental exploration of the out-of-equilibrium properties
of active colloidal systems.
article_number: '088304'
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Jérémie A
full_name: Palacci, Jérémie A
id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
last_name: Palacci
orcid: 0000-0002-7253-9465
- first_name: Cécile
full_name: Cottin-Bizonne, Cécile
last_name: Cottin-Bizonne
- first_name: Christophe
full_name: Ybert, Christophe
last_name: Ybert
- first_name: Lydéric
full_name: Bocquet, Lydéric
last_name: Bocquet
citation:
ama: Palacci JA, Cottin-Bizonne C, Ybert C, Bocquet L. Sedimentation and effective
temperature of active colloidal suspensions. Physical Review Letters. 2010;105(8).
doi:10.1103/physrevlett.105.088304
apa: Palacci, J. A., Cottin-Bizonne, C., Ybert, C., & Bocquet, L. (2010). Sedimentation
and effective temperature of active colloidal suspensions. Physical Review
Letters. American Physical Society . https://doi.org/10.1103/physrevlett.105.088304
chicago: Palacci, Jérémie A, Cécile Cottin-Bizonne, Christophe Ybert, and Lydéric
Bocquet. “Sedimentation and Effective Temperature of Active Colloidal Suspensions.”
Physical Review Letters. American Physical Society , 2010. https://doi.org/10.1103/physrevlett.105.088304.
ieee: J. A. Palacci, C. Cottin-Bizonne, C. Ybert, and L. Bocquet, “Sedimentation
and effective temperature of active colloidal suspensions,” Physical Review
Letters, vol. 105, no. 8. American Physical Society , 2010.
ista: Palacci JA, Cottin-Bizonne C, Ybert C, Bocquet L. 2010. Sedimentation and
effective temperature of active colloidal suspensions. Physical Review Letters.
105(8), 088304.
mla: Palacci, Jérémie A., et al. “Sedimentation and Effective Temperature of Active
Colloidal Suspensions.” Physical Review Letters, vol. 105, no. 8, 088304,
American Physical Society , 2010, doi:10.1103/physrevlett.105.088304.
short: J.A. Palacci, C. Cottin-Bizonne, C. Ybert, L. Bocquet, Physical Review Letters
105 (2010).
date_created: 2021-01-19T10:26:33Z
date_published: 2010-08-20T00:00:00Z
date_updated: 2023-02-23T13:46:42Z
day: '20'
doi: 10.1103/physrevlett.105.088304
extern: '1'
external_id:
arxiv:
- '1004.4340'
pmid:
- '20868136'
intvolume: ' 105'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1004.4340
month: '08'
oa: 1
oa_version: Preprint
pmid: 1
publication: Physical Review Letters
publication_identifier:
eissn:
- '10797114'
issn:
- '00319007'
publication_status: published
publisher: 'American Physical Society '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sedimentation and effective temperature of active colloidal suspensions
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 105
year: '2010'
...
---
_id: '9145'
abstract:
- lang: eng
text: "We have found a new way to express the solutions of the RSM (Reynolds Stress
Model) equations that allows us to present the turbulent diffusivities for heat,
salt and momentum in a way that is considerably simpler and thus easier to implement
than in previous work. The RSM provides the dimensionless mixing efficiencies
Γα (α stands for heat, salt and momentum). However, to compute the diffusivities,
one needs additional information, specifically, the dissipation ε. Since a dynamic
equation for the latter that includes the physical processes relevant to the ocean
is still not available, one must resort to different sources of information outside
the RSM to obtain a complete Mixing Scheme usable in OGCMs.\r\nAs for the RSM
results, we show that the Γα’s are functions of both Ri and Rρ (Richardson number
and density ratio representing double diffusion, DD); the Γα are different for
heat, salt and momentum; in the case of heat, the traditional value Γh = 0.2 is
valid only in the presence of strong shear (when DD is inoperative) while when
shear subsides, NATRE data show that Γh can be three times as large, a result
that we reproduce. The salt Γs is given in terms of Γh. The momentum Γm has thus
far been guessed with different prescriptions while the RSM provides a well defined
expression for Γm(Ri, Rρ). Having tested Γh, we then test the momentum Γm by showing
that the turbulent Prandtl number Γm/Γh vs. Ri reproduces the available data quite
well.\r\n\r\nAs for the dissipation ε, we use different representations, one for
the mixed layer (ML), one for the thermocline and one for the ocean’s bottom.
For the ML, we adopt a procedure analogous to the one successfully used in PB
(planetary boundary layer) studies; for the thermocline, we employ an expression
for the variable εN−2 from studies of the internal gravity waves spectra which
includes a latitude dependence; for the ocean bottom, we adopt the enhanced bottom
diffusivity expression used by previous authors but with a state of the art internal
tidal energy formulation and replace the fixed Γα = 0.2 with the RSM result that
brings into the problem the Ri, Rρ dependence of the Γα; the unresolved bottom
drag, which has thus far been either ignored or modeled with heuristic relations,
is modeled using a formalism we previously developed and tested in PBL studies.\r\nWe
carried out several tests without an OGCM. Prandtl and flux Richardson numbers
vs. Ri. The RSM model reproduces both types of data satisfactorily. DD and Mixing
efficiency Γh(Ri, Rρ). The RSM model reproduces well the NATRE data. Bimodal ε-distribution.
NATRE data show that ε(Ri < 1) ≈ 10ε(Ri > 1), which our model reproduces. Heat
to salt flux ratio. In the Ri ≫ 1 regime, the RSM predictions reproduce the data
satisfactorily. NATRE mass diffusivity. The z-profile of the mass diffusivity
reproduces well the measurements at NATRE. The local form of the mixing scheme
is algebraic with one cubic equation to solve."
article_processing_charge: No
article_type: original
author:
- first_name: V.M.
full_name: Canuto, V.M.
last_name: Canuto
- first_name: A.M.
full_name: Howard, A.M.
last_name: Howard
- first_name: Y.
full_name: Cheng, Y.
last_name: Cheng
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
- first_name: A.
full_name: Leboissetier, A.
last_name: Leboissetier
- first_name: S.R.
full_name: Jayne, S.R.
last_name: Jayne
citation:
ama: 'Canuto VM, Howard AM, Cheng Y, Muller CJ, Leboissetier A, Jayne SR. Ocean
turbulence, III: New GISS vertical mixing scheme. Ocean Modelling. 2010;34(3-4):70-91.
doi:10.1016/j.ocemod.2010.04.006'
apa: 'Canuto, V. M., Howard, A. M., Cheng, Y., Muller, C. J., Leboissetier, A.,
& Jayne, S. R. (2010). Ocean turbulence, III: New GISS vertical mixing scheme.
Ocean Modelling. Elsevier. https://doi.org/10.1016/j.ocemod.2010.04.006'
chicago: 'Canuto, V.M., A.M. Howard, Y. Cheng, Caroline J Muller, A. Leboissetier,
and S.R. Jayne. “Ocean Turbulence, III: New GISS Vertical Mixing Scheme.” Ocean
Modelling. Elsevier, 2010. https://doi.org/10.1016/j.ocemod.2010.04.006.'
ieee: 'V. M. Canuto, A. M. Howard, Y. Cheng, C. J. Muller, A. Leboissetier, and
S. R. Jayne, “Ocean turbulence, III: New GISS vertical mixing scheme,” Ocean
Modelling, vol. 34, no. 3–4. Elsevier, pp. 70–91, 2010.'
ista: 'Canuto VM, Howard AM, Cheng Y, Muller CJ, Leboissetier A, Jayne SR. 2010.
Ocean turbulence, III: New GISS vertical mixing scheme. Ocean Modelling. 34(3–4),
70–91.'
mla: 'Canuto, V. M., et al. “Ocean Turbulence, III: New GISS Vertical Mixing Scheme.”
Ocean Modelling, vol. 34, no. 3–4, Elsevier, 2010, pp. 70–91, doi:10.1016/j.ocemod.2010.04.006.'
short: V.M. Canuto, A.M. Howard, Y. Cheng, C.J. Muller, A. Leboissetier, S.R. Jayne,
Ocean Modelling 34 (2010) 70–91.
date_created: 2021-02-15T14:40:19Z
date_published: 2010-05-12T00:00:00Z
date_updated: 2022-01-24T13:51:35Z
day: '12'
doi: 10.1016/j.ocemod.2010.04.006
extern: '1'
intvolume: ' 34'
issue: 3-4
keyword:
- Computer Science (miscellaneous)
- Geotechnical Engineering and Engineering Geology
- Atmospheric Science
- Oceanography
language:
- iso: eng
month: '05'
oa_version: None
page: 70-91
publication: Ocean Modelling
publication_identifier:
issn:
- 1463-5003
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Ocean turbulence, III: New GISS vertical mixing scheme'
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 34
year: '2010'
...
---
_id: '9146'
abstract:
- lang: eng
text: "The factors governing the rate of change in the amount of atmospheric water
vapor are analyzed in simulations of climate change. The global-mean amount of
water vapor is estimated to increase at a differential rate of 7.3% K − 1 with
respect to global-mean surface air temperature in the multi-model mean. Larger
rates of change result if the fractional change is evaluated over a finite change
in temperature (e.g., 8.2% K − 1 for a 3 K warming), and rates of change of zonal-mean
column water vapor range from 6 to 12% K − 1 depending on latitude.\r\nClausius–Clapeyron
scaling is directly evaluated using an invariant distribution of monthly-mean
relative humidity, giving a rate of 7.4% K − 1 for global-mean water vapor. There
are deviations from Clausius–Clapeyron scaling of zonal-mean column water vapor
in the tropics and mid-latitudes, but they largely cancel in the global mean.
A purely thermodynamic scaling based on a saturated troposphere gives a higher
global rate of 7.9% K − 1.\r\nSurface specific humidity increases at a rate of
5.7% K − 1, considerably lower than the rate for global-mean water vapor. Surface
specific humidity closely follows Clausius–Clapeyron scaling over ocean. But there
are widespread decreases in surface relative humidity over land (by more than
1% K − 1 in many regions), and it is argued that decreases of this magnitude could
result from the land/ocean contrast in surface warming."
article_number: '025207'
article_processing_charge: No
article_type: original
author:
- first_name: P A
full_name: O’Gorman, P A
last_name: O’Gorman
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
citation:
ama: O’Gorman PA, Muller CJ. How closely do changes in surface and column water
vapor follow Clausius–Clapeyron scaling in climate change simulations? Environmental
Research Letters. 2010;5(2). doi:10.1088/1748-9326/5/2/025207
apa: O’Gorman, P. A., & Muller, C. J. (2010). How closely do changes in surface
and column water vapor follow Clausius–Clapeyron scaling in climate change simulations?
Environmental Research Letters. IOP Publishing. https://doi.org/10.1088/1748-9326/5/2/025207
chicago: O’Gorman, P A, and Caroline J Muller. “How Closely Do Changes in Surface
and Column Water Vapor Follow Clausius–Clapeyron Scaling in Climate Change Simulations?”
Environmental Research Letters. IOP Publishing, 2010. https://doi.org/10.1088/1748-9326/5/2/025207.
ieee: P. A. O’Gorman and C. J. Muller, “How closely do changes in surface and column
water vapor follow Clausius–Clapeyron scaling in climate change simulations?,”
Environmental Research Letters, vol. 5, no. 2. IOP Publishing, 2010.
ista: O’Gorman PA, Muller CJ. 2010. How closely do changes in surface and column
water vapor follow Clausius–Clapeyron scaling in climate change simulations? Environmental
Research Letters. 5(2), 025207.
mla: O’Gorman, P. A., and Caroline J. Muller. “How Closely Do Changes in Surface
and Column Water Vapor Follow Clausius–Clapeyron Scaling in Climate Change Simulations?”
Environmental Research Letters, vol. 5, no. 2, 025207, IOP Publishing,
2010, doi:10.1088/1748-9326/5/2/025207.
short: P.A. O’Gorman, C.J. Muller, Environmental Research Letters 5 (2010).
date_created: 2021-02-15T14:40:46Z
date_published: 2010-04-09T00:00:00Z
date_updated: 2022-01-24T13:51:02Z
day: '09'
doi: 10.1088/1748-9326/5/2/025207
extern: '1'
intvolume: ' 5'
issue: '2'
keyword:
- Renewable Energy
- Sustainability and the Environment
- Public Health
- Environmental and Occupational Health
- General Environmental Science
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1088/1748-9326/5/2/025207
month: '04'
oa: 1
oa_version: Published Version
publication: Environmental Research Letters
publication_identifier:
issn:
- 1748-9326
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: How closely do changes in surface and column water vapor follow Clausius–Clapeyron
scaling in climate change simulations?
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 5
year: '2010'
...
---
_id: '920'
abstract:
- lang: eng
text: Most eukaryotic cells sense and respond to the mechanical properties of their
surroundings. This can strongly influence their collective behavior in embryonic
development, tissue function, and wound healing. We use a deformable substrate
to measure collective behavior in cell motion due to substrate mediated cell-cell
interactions. We quantify spatial and temporal correlations in migration velocity
and substrate deformation, and show that cooperative cell-driven patterns of substrate
deformation mediate long-distance mechanical coupling between cells and control
collective cell migration.
acknowledgement: "This work was supported by the NSF (DMR-0602684) and the Harvard
MRSEC (DMR-0820484).\r\nWe would like to thank Dr. James Butler for helpful conversations."
article_processing_charge: No
author:
- first_name: Thomas
full_name: Angelini, Thomas
last_name: Angelini
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Xavier
full_name: Trepat, Xavier
last_name: Trepat
- first_name: Jeffrey
full_name: Fredberg, Jeffrey
last_name: Fredberg
- first_name: David
full_name: Weitz, David
last_name: Weitz
citation:
ama: Angelini T, Hannezo EB, Trepat X, Fredberg J, Weitz D. Cell migration driven
by cooperative substrate deformation patterns. Physical Review Letters.
2010;104(16). doi:10.1103/PhysRevLett.104.168104
apa: Angelini, T., Hannezo, E. B., Trepat, X., Fredberg, J., & Weitz, D. (2010).
Cell migration driven by cooperative substrate deformation patterns. Physical
Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.104.168104
chicago: Angelini, Thomas, Edouard B Hannezo, Xavier Trepat, Jeffrey Fredberg, and
David Weitz. “Cell Migration Driven by Cooperative Substrate Deformation Patterns.”
Physical Review Letters. American Physical Society, 2010. https://doi.org/10.1103/PhysRevLett.104.168104.
ieee: T. Angelini, E. B. Hannezo, X. Trepat, J. Fredberg, and D. Weitz, “Cell migration
driven by cooperative substrate deformation patterns,” Physical Review Letters,
vol. 104, no. 16. American Physical Society, 2010.
ista: Angelini T, Hannezo EB, Trepat X, Fredberg J, Weitz D. 2010. Cell migration
driven by cooperative substrate deformation patterns. Physical Review Letters.
104(16).
mla: Angelini, Thomas, et al. “Cell Migration Driven by Cooperative Substrate Deformation
Patterns.” Physical Review Letters, vol. 104, no. 16, American Physical
Society, 2010, doi:10.1103/PhysRevLett.104.168104.
short: T. Angelini, E.B. Hannezo, X. Trepat, J. Fredberg, D. Weitz, Physical Review
Letters 104 (2010).
date_created: 2018-12-11T11:49:12Z
date_published: 2010-04-23T00:00:00Z
date_updated: 2021-01-12T08:21:55Z
day: '23'
doi: 10.1103/PhysRevLett.104.168104
extern: '1'
intvolume: ' 104'
issue: '16'
language:
- iso: eng
month: '04'
oa_version: None
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6523'
status: public
title: Cell migration driven by cooperative substrate deformation patterns
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 104
year: '2010'
...
---
_id: '9452'
abstract:
- lang: eng
text: Eukaryotic cytosine methylation represses transcription but also occurs in
the bodies of active genes, and the extent of methylation biology conservation
is unclear. We quantified DNA methylation in 17 eukaryotic genomes and found that
gene body methylation is conserved between plants and animals, whereas selective
methylation of transposons is not. We show that methylation of plant transposons
in the CHG context extends to green algae and that exclusion of histone H2A.Z
from methylated DNA is conserved between plants and animals, and we present evidence
for RNA-directed DNA methylation of fungal genes. Our data demonstrate that extant
DNA methylation systems are mosaics of conserved and derived features, and indicate
that gene body methylation is an ancient property of eukaryotic genomes.
article_processing_charge: No
article_type: original
author:
- first_name: 'Assaf '
full_name: 'Zemach, Assaf '
last_name: Zemach
- first_name: Ivy E.
full_name: McDaniel, Ivy E.
last_name: McDaniel
- first_name: Pedro
full_name: Silva, Pedro
last_name: Silva
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
citation:
ama: Zemach A, McDaniel IE, Silva P, Zilberman D. Genome-wide evolutionary analysis
of eukaryotic DNA methylation. Science. 2010;328(5980):916-919. doi:10.1126/science.1186366
apa: Zemach, A., McDaniel, I. E., Silva, P., & Zilberman, D. (2010). Genome-wide
evolutionary analysis of eukaryotic DNA methylation. Science. American
Association for the Advancement of Science. https://doi.org/10.1126/science.1186366
chicago: Zemach, Assaf , Ivy E. McDaniel, Pedro Silva, and Daniel Zilberman. “Genome-Wide
Evolutionary Analysis of Eukaryotic DNA Methylation.” Science. American
Association for the Advancement of Science, 2010. https://doi.org/10.1126/science.1186366.
ieee: A. Zemach, I. E. McDaniel, P. Silva, and D. Zilberman, “Genome-wide evolutionary
analysis of eukaryotic DNA methylation,” Science, vol. 328, no. 5980. American
Association for the Advancement of Science, pp. 916–919, 2010.
ista: Zemach A, McDaniel IE, Silva P, Zilberman D. 2010. Genome-wide evolutionary
analysis of eukaryotic DNA methylation. Science. 328(5980), 916–919.
mla: Zemach, Assaf, et al. “Genome-Wide Evolutionary Analysis of Eukaryotic DNA
Methylation.” Science, vol. 328, no. 5980, American Association for the
Advancement of Science, 2010, pp. 916–19, doi:10.1126/science.1186366.
short: A. Zemach, I.E. McDaniel, P. Silva, D. Zilberman, Science 328 (2010) 916–919.
date_created: 2021-06-04T08:26:08Z
date_published: 2010-05-14T00:00:00Z
date_updated: 2021-12-14T08:35:37Z
day: '14'
department:
- _id: DaZi
doi: 10.1126/science.1186366
extern: '1'
external_id:
pmid:
- '20395474 '
intvolume: ' 328'
issue: '5980'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '05'
oa_version: None
page: 916-919
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
issn:
- 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genome-wide evolutionary analysis of eukaryotic DNA methylation
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 328
year: '2010'
...
---
_id: '9485'
abstract:
- lang: eng
text: 'Cytosine methylation silences transposable elements in plants, vertebrates,
and fungi but also regulates gene expression. Plant methylation is catalyzed by
three families of enzymes, each with a preferred sequence context: CG, CHG (H
= A, C, or T), and CHH, with CHH methylation targeted by the RNAi pathway. Arabidopsis
thaliana endosperm, a placenta-like tissue that nourishes the embryo, is globally
hypomethylated in the CG context while retaining high non-CG methylation. Global
methylation dynamics in seeds of cereal crops that provide the bulk of human nutrition
remain unknown. Here, we show that rice endosperm DNA is hypomethylated in all
sequence contexts. Non-CG methylation is reduced evenly across the genome, whereas
CG hypomethylation is localized. CHH methylation of small transposable elements
is increased in embryos, suggesting that endosperm demethylation enhances transposon
silencing. Genes preferentially expressed in endosperm, including those coding
for major storage proteins and starch synthesizing enzymes, are frequently hypomethylated
in endosperm, indicating that DNA methylation is a crucial regulator of rice endosperm
biogenesis. Our data show that genome-wide reshaping of seed DNA methylation is
conserved among angiosperms and has a profound effect on gene expression in cereal
crops.'
article_processing_charge: No
article_type: original
author:
- first_name: Assaf
full_name: Zemach, Assaf
last_name: Zemach
- first_name: M. Yvonne
full_name: Kim, M. Yvonne
last_name: Kim
- first_name: Pedro
full_name: Silva, Pedro
last_name: Silva
- first_name: Jessica A.
full_name: Rodrigues, Jessica A.
last_name: Rodrigues
- first_name: Bradley
full_name: Dotson, Bradley
last_name: Dotson
- first_name: Matthew D.
full_name: Brooks, Matthew D.
last_name: Brooks
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
citation:
ama: Zemach A, Kim MY, Silva P, et al. Local DNA hypomethylation activates genes
in rice endosperm. Proceedings of the National Academy of Sciences. 2010;107(43):18729-18734.
doi:10.1073/pnas.1009695107
apa: Zemach, A., Kim, M. Y., Silva, P., Rodrigues, J. A., Dotson, B., Brooks, M.
D., & Zilberman, D. (2010). Local DNA hypomethylation activates genes in rice
endosperm. Proceedings of the National Academy of Sciences. National Academy
of Sciences. https://doi.org/10.1073/pnas.1009695107
chicago: Zemach, Assaf, M. Yvonne Kim, Pedro Silva, Jessica A. Rodrigues, Bradley
Dotson, Matthew D. Brooks, and Daniel Zilberman. “Local DNA Hypomethylation Activates
Genes in Rice Endosperm.” Proceedings of the National Academy of Sciences.
National Academy of Sciences, 2010. https://doi.org/10.1073/pnas.1009695107.
ieee: A. Zemach et al., “Local DNA hypomethylation activates genes in rice
endosperm,” Proceedings of the National Academy of Sciences, vol. 107,
no. 43. National Academy of Sciences, pp. 18729–18734, 2010.
ista: Zemach A, Kim MY, Silva P, Rodrigues JA, Dotson B, Brooks MD, Zilberman D.
2010. Local DNA hypomethylation activates genes in rice endosperm. Proceedings
of the National Academy of Sciences. 107(43), 18729–18734.
mla: Zemach, Assaf, et al. “Local DNA Hypomethylation Activates Genes in Rice Endosperm.”
Proceedings of the National Academy of Sciences, vol. 107, no. 43, National
Academy of Sciences, 2010, pp. 18729–34, doi:10.1073/pnas.1009695107.
short: A. Zemach, M.Y. Kim, P. Silva, J.A. Rodrigues, B. Dotson, M.D. Brooks, D.
Zilberman, Proceedings of the National Academy of Sciences 107 (2010) 18729–18734.
date_created: 2021-06-07T09:31:01Z
date_published: 2010-10-26T00:00:00Z
date_updated: 2021-12-14T08:40:02Z
day: '26'
department:
- _id: DaZi
doi: 10.1073/pnas.1009695107
extern: '1'
external_id:
pmid:
- '20937895'
intvolume: ' 107'
issue: '43'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1073/pnas.1009695107
month: '10'
oa: 1
oa_version: Published Version
page: 18729-18734
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Local DNA hypomethylation activates genes in rice endosperm
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 107
year: '2010'
...
---
_id: '9489'
abstract:
- lang: eng
text: Cytosine methylation is an ancient process with conserved enzymology but diverse
biological functions that include defense against transposable elements and regulation
of gene expression. Here we will discuss the evolution and biological significance
of eukaryotic DNA methylation, the likely drivers of that evolution, and major
remaining mysteries.
article_processing_charge: No
article_type: review
author:
- first_name: Assaf
full_name: Zemach, Assaf
last_name: Zemach
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
citation:
ama: Zemach A, Zilberman D. Evolution of eukaryotic DNA methylation and the pursuit
of safer sex. Current Biology. 2010;20(17):R780-R785. doi:10.1016/j.cub.2010.07.007
apa: Zemach, A., & Zilberman, D. (2010). Evolution of eukaryotic DNA methylation
and the pursuit of safer sex. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2010.07.007
chicago: Zemach, Assaf, and Daniel Zilberman. “Evolution of Eukaryotic DNA Methylation
and the Pursuit of Safer Sex.” Current Biology. Elsevier, 2010. https://doi.org/10.1016/j.cub.2010.07.007.
ieee: A. Zemach and D. Zilberman, “Evolution of eukaryotic DNA methylation and the
pursuit of safer sex,” Current Biology, vol. 20, no. 17. Elsevier, pp.
R780–R785, 2010.
ista: Zemach A, Zilberman D. 2010. Evolution of eukaryotic DNA methylation and the
pursuit of safer sex. Current Biology. 20(17), R780–R785.
mla: Zemach, Assaf, and Daniel Zilberman. “Evolution of Eukaryotic DNA Methylation
and the Pursuit of Safer Sex.” Current Biology, vol. 20, no. 17, Elsevier,
2010, pp. R780–85, doi:10.1016/j.cub.2010.07.007.
short: A. Zemach, D. Zilberman, Current Biology 20 (2010) R780–R785.
date_created: 2021-06-07T09:45:27Z
date_published: 2010-09-14T00:00:00Z
date_updated: 2021-12-14T08:52:34Z
day: '14'
department:
- _id: DaZi
doi: 10.1016/j.cub.2010.07.007
extern: '1'
external_id:
pmid:
- '20833323'
intvolume: ' 20'
issue: '17'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.cub.2010.07.007
month: '09'
oa: 1
oa_version: Published Version
page: R780-R785
pmid: 1
publication: Current Biology
publication_identifier:
eissn:
- 1879-0445
issn:
- 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evolution of eukaryotic DNA methylation and the pursuit of safer sex
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 20
year: '2010'
...
---
_id: '10127'
abstract:
- lang: eng
text: We use numerical simulations to show how noninteracting hard particles binding
to a deformable elastic shell may self-assemble into a variety of linear patterns.
This is a result of the nontrivial elastic response to deformations of shells.
The morphology of the patterns can be controlled by the mechanical properties
of the surface, and can be fine-tuned by varying the binding energy of the particles.
We also repeat our calculations for a fully flexible chain and find that the chain
conformations follow patterns similar to those formed by the nanoparticles under
analogous conditions. We propose a simple way of understanding and sorting the
different structures and relate it to the underlying shape transition of the shell.
Finally, we discuss the implications of our results.
acknowledgement: This work was supported by the National Science Foundation under
Career Grant No. DMR-0846426. We thank Josep C. Pàmies for helpful discussions.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Anđela
full_name: Šarić, Anđela
id: bf63d406-f056-11eb-b41d-f263a6566d8b
last_name: Šarić
orcid: 0000-0002-7854-2139
- first_name: Angelo
full_name: Cacciuto, Angelo
last_name: Cacciuto
citation:
ama: Šarić A, Cacciuto A. Particle self-assembly on soft elastic shells. Soft
Matter. 2010;7(5):1874-1878. doi:10.1039/c0sm01143f
apa: Šarić, A., & Cacciuto, A. (2010). Particle self-assembly on soft elastic
shells. Soft Matter. Royal Society of Chemistry (RSC). https://doi.org/10.1039/c0sm01143f
chicago: Šarić, Anđela, and Angelo Cacciuto. “Particle Self-Assembly on Soft Elastic
Shells.” Soft Matter. Royal Society of Chemistry (RSC), 2010. https://doi.org/10.1039/c0sm01143f.
ieee: A. Šarić and A. Cacciuto, “Particle self-assembly on soft elastic shells,”
Soft Matter, vol. 7, no. 5. Royal Society of Chemistry (RSC), pp. 1874–1878,
2010.
ista: Šarić A, Cacciuto A. 2010. Particle self-assembly on soft elastic shells.
Soft Matter. 7(5), 1874–1878.
mla: Šarić, Anđela, and Angelo Cacciuto. “Particle Self-Assembly on Soft Elastic
Shells.” Soft Matter, vol. 7, no. 5, Royal Society of Chemistry (RSC),
2010, pp. 1874–78, doi:10.1039/c0sm01143f.
short: A. Šarić, A. Cacciuto, Soft Matter 7 (2010) 1874–1878.
date_created: 2021-10-12T08:34:23Z
date_published: 2010-12-23T00:00:00Z
date_updated: 2021-10-12T09:49:27Z
day: '23'
doi: 10.1039/c0sm01143f
extern: '1'
external_id:
arxiv:
- '1010.2453'
intvolume: ' 7'
issue: '5'
keyword:
- condensed matter physics
- general chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1010.2453
month: '12'
oa: 1
oa_version: Preprint
page: 1874-1878
publication: Soft Matter
publication_identifier:
issn:
- 1744-683X
- 1744-6848
publication_status: published
publisher: Royal Society of Chemistry (RSC)
quality_controlled: '1'
status: public
title: Particle self-assembly on soft elastic shells
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 7
year: '2010'
...
---
_id: '10128'
abstract:
- lang: eng
text: 'An extensive computational study of the conformational preferences of three
capped dipeptides: Ac-Xxx-Phe-NH2, Xxx = Gly, Ala, Val is reported. On the basis
of local second-order Møller–Plesset perturbation theory (LMP2) and DFT computations
we were able to identify the experimentally observed conformers as γL–γL(g−) and
β-turn I(g+) in Ac-Gly-Phe-NH2, and Ac-Ala-Phe-NH2, and as the closely related
γL(g+)–γL(g−) and β-turn I(a,g+) in Ac-Val-Phe-NH2. In contrast to the experimental
observation that peptides with bulky side chain have a propensity for β-turns,
we show that in Ac-Val-Phe-NH2 the minimum energy structure corresponds to the
experimentally non detected β-strand.'
acknowledgement: This work has been supported by the MZOŠ projects 098-0352851-2921
and 119-1191342-2959.
article_processing_charge: No
article_type: original
author:
- first_name: Anđela
full_name: Šarić, Anđela
id: bf63d406-f056-11eb-b41d-f263a6566d8b
last_name: Šarić
orcid: 0000-0002-7854-2139
- first_name: T.
full_name: Hrenar, T.
last_name: Hrenar
- first_name: M.
full_name: Mališ, M.
last_name: Mališ
- first_name: N.
full_name: Došlić, N.
last_name: Došlić
citation:
ama: Šarić A, Hrenar T, Mališ M, Došlić N. Quantum mechanical study of secondary
structure formation in protected dipeptides. Physical Chemistry Chemical Physics.
2010;12(18):4678-4685. doi:10.1039/b923041f
apa: Šarić, A., Hrenar, T., Mališ, M., & Došlić, N. (2010). Quantum mechanical
study of secondary structure formation in protected dipeptides. Physical Chemistry
Chemical Physics. Royal Society of Chemistry . https://doi.org/10.1039/b923041f
chicago: Šarić, Anđela, T. Hrenar, M. Mališ, and N. Došlić. “Quantum Mechanical
Study of Secondary Structure Formation in Protected Dipeptides.” Physical Chemistry
Chemical Physics. Royal Society of Chemistry , 2010. https://doi.org/10.1039/b923041f.
ieee: A. Šarić, T. Hrenar, M. Mališ, and N. Došlić, “Quantum mechanical study of
secondary structure formation in protected dipeptides,” Physical Chemistry
Chemical Physics, vol. 12, no. 18. Royal Society of Chemistry , pp. 4678–4685,
2010.
ista: Šarić A, Hrenar T, Mališ M, Došlić N. 2010. Quantum mechanical study of secondary
structure formation in protected dipeptides. Physical Chemistry Chemical Physics.
12(18), 4678–4685.
mla: Šarić, Anđela, et al. “Quantum Mechanical Study of Secondary Structure Formation
in Protected Dipeptides.” Physical Chemistry Chemical Physics, vol. 12,
no. 18, Royal Society of Chemistry , 2010, pp. 4678–85, doi:10.1039/b923041f.
short: A. Šarić, T. Hrenar, M. Mališ, N. Došlić, Physical Chemistry Chemical Physics
12 (2010) 4678–4685.
date_created: 2021-10-12T08:44:34Z
date_published: 2010-03-16T00:00:00Z
date_updated: 2021-10-12T09:49:22Z
day: '16'
doi: 10.1039/b923041f
extern: '1'
external_id:
pmid:
- '20428547'
intvolume: ' 12'
issue: '18'
keyword:
- Physical and Theoretical Chemistry
- General Physics and Astronomy
language:
- iso: eng
main_file_link:
- url: https://europepmc.org/article/med/20428547
month: '03'
oa_version: None
page: 4678-4685
pmid: 1
publication: Physical Chemistry Chemical Physics
publication_identifier:
issn:
- 1463-9076
- 1463-9084
publication_status: published
publisher: 'Royal Society of Chemistry '
quality_controlled: '1'
status: public
title: Quantum mechanical study of secondary structure formation in protected dipeptides
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 12
year: '2010'
...
---
_id: '10390'
abstract:
- lang: eng
text: 'We use numerical simulations to study the phase behavior of a system of purely
repulsive soft dumbbells as a function of size ratio of the two components and
their relative degree of deformability. We find a plethora of different phases,
which includes most of the mesophases observed in self-assembly of block copolymers
but also crystalline structures formed by asymmetric, hard binary mixtures. Our
results detail the phenomenological behavior of these systems when softness is
introduced in terms of two different classes of interparticle interactions: (a)
the elastic Hertz potential, which has a finite energy cost for complete overlap
of any two components, and (b) a generic power-law repulsion with tunable exponent.
We discuss how simple geometric arguments can be used to account for the large
structural variety observed in these systems and detail the similarities and differences
in the phase behavior for the two classes of potentials under consideration.'
acknowledgement: This work was supported by the National Science Foundation under
CAREER Grant No. DMR-0846426 and partly by Columbia University.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Anđela
full_name: Šarić, Anđela
id: bf63d406-f056-11eb-b41d-f263a6566d8b
last_name: Šarić
orcid: 0000-0002-7854-2139
- first_name: Behnaz
full_name: Bozorgui, Behnaz
last_name: Bozorgui
- first_name: Angelo
full_name: Cacciuto, Angelo
last_name: Cacciuto
citation:
ama: Šarić A, Bozorgui B, Cacciuto A. Packing of soft asymmetric dumbbells. The
Journal of Physical Chemistry B. 2010;115(22):7182-7189. doi:10.1021/jp107545w
apa: Šarić, A., Bozorgui, B., & Cacciuto, A. (2010). Packing of soft asymmetric
dumbbells. The Journal of Physical Chemistry B. American Chemical Society.
https://doi.org/10.1021/jp107545w
chicago: Šarić, Anđela, Behnaz Bozorgui, and Angelo Cacciuto. “Packing of Soft Asymmetric
Dumbbells.” The Journal of Physical Chemistry B. American Chemical Society,
2010. https://doi.org/10.1021/jp107545w.
ieee: A. Šarić, B. Bozorgui, and A. Cacciuto, “Packing of soft asymmetric dumbbells,”
The Journal of Physical Chemistry B, vol. 115, no. 22. American Chemical
Society, pp. 7182–7189, 2010.
ista: Šarić A, Bozorgui B, Cacciuto A. 2010. Packing of soft asymmetric dumbbells.
The Journal of Physical Chemistry B. 115(22), 7182–7189.
mla: Šarić, Anđela, et al. “Packing of Soft Asymmetric Dumbbells.” The Journal
of Physical Chemistry B, vol. 115, no. 22, American Chemical Society, 2010,
pp. 7182–89, doi:10.1021/jp107545w.
short: A. Šarić, B. Bozorgui, A. Cacciuto, The Journal of Physical Chemistry B 115
(2010) 7182–7189.
date_created: 2021-11-29T15:13:17Z
date_published: 2010-10-15T00:00:00Z
date_updated: 2021-11-29T16:20:29Z
day: '15'
doi: 10.1021/jp107545w
extern: '1'
external_id:
arxiv:
- '1010.2458'
pmid:
- '20949934'
intvolume: ' 115'
issue: '22'
keyword:
- materials chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1010.2458
month: '10'
oa: 1
oa_version: Preprint
page: 7182-7189
pmid: 1
publication: The Journal of Physical Chemistry B
publication_identifier:
eissn:
- 1520-5207
issn:
- 1520-6106
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Packing of soft asymmetric dumbbells
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 115
year: '2010'
...