---
_id: '901'
abstract:
- lang: eng
  text: 'Background: Surveying deleterious variation in human populations is crucial
    for our understanding, diagnosis and potential treatment of human genetic pathologies.
    A number of recent genome-wide analyses focused on the prevalence of segregating
    deleterious alleles in the nuclear genome. However, such studies have not been
    conducted for the mitochondrial genome.Results: We present a systematic survey
    of polymorphisms in the human mitochondrial genome, including those predicted
    to be deleterious and those that correspond to known pathogenic mutations. Analyzing
    4458 completely sequenced mitochondrial genomes we characterize the genetic diversity
    of different types of single nucleotide polymorphisms (SNPs) in African (L haplotypes)
    and non-African (M and N haplotypes) populations. We find that the overall level
    of polymorphism is higher in the mitochondrial compared to the nuclear genome,
    although the mitochondrial genome appears to be under stronger selection as indicated
    by proportionally fewer nonsynonymous than synonymous substitutions. The African
    mitochondrial genomes show higher heterozygosity, a greater number of polymorphic
    sites and higher frequencies of polymorphisms for synonymous, benign and damaging
    polymorphism than non-African genomes. However, African genomes carry significantly
    fewer SNPs that have been previously characterized as pathogenic compared to non-African
    genomes.Conclusions: Finding SNPs classified as pathogenic to be the only category
    of polymorphisms that are more abundant in non-African genomes is best explained
    by a systematic ascertainment bias that favours the discovery of pathogenic polymorphisms
    segregating in non-African populations. This further suggests that, contrary to
    the common disease-common variant hypothesis, pathogenic mutations are largely
    population-specific and different SNPs may be associated with the same disease
    in different populations. Therefore, to obtain a comprehensive picture of the
    deleterious variability in the human population, as well as to improve the diagnostics
    of individuals carrying African mitochondrial haplotypes, it is necessary to survey
    different populations independently.Reviewers: This article was reviewed by Dr
    Mikhail Gelfand, Dr Vasily Ramensky (nominated by Dr Eugene Koonin) and Dr David
    Rand (nominated by Dr Laurence Hurst).'
acknowledgement: We thank Ivan Adzhubei and Shamil Sunyaev for extensive assistance
  with PolyPhen 2 and insightful discussion. We thank the Spanish Ministry of Science
  and Innovation, Plan Nacional Program grant BFU2009-09271 for funding.
author:
- first_name: Michael
  full_name: Breen, Michael S
  last_name: Breen
- first_name: Fyodor
  full_name: Fyodor Kondrashov
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: Breen M, Kondrashov F. Mitochondrial pathogenic mutations are population-specific.
    <i>Biology Direct</i>. 2010;5. doi:<a href="https://doi.org/10.1186/1745-6150-5-68">10.1186/1745-6150-5-68</a>
  apa: Breen, M., &#38; Kondrashov, F. (2010). Mitochondrial pathogenic mutations
    are population-specific. <i>Biology Direct</i>. BioMed Central. <a href="https://doi.org/10.1186/1745-6150-5-68">https://doi.org/10.1186/1745-6150-5-68</a>
  chicago: Breen, Michael, and Fyodor Kondrashov. “Mitochondrial Pathogenic Mutations
    Are Population-Specific.” <i>Biology Direct</i>. BioMed Central, 2010. <a href="https://doi.org/10.1186/1745-6150-5-68">https://doi.org/10.1186/1745-6150-5-68</a>.
  ieee: M. Breen and F. Kondrashov, “Mitochondrial pathogenic mutations are population-specific,”
    <i>Biology Direct</i>, vol. 5. BioMed Central, 2010.
  ista: Breen M, Kondrashov F. 2010. Mitochondrial pathogenic mutations are population-specific.
    Biology Direct. 5.
  mla: Breen, Michael, and Fyodor Kondrashov. “Mitochondrial Pathogenic Mutations
    Are Population-Specific.” <i>Biology Direct</i>, vol. 5, BioMed Central, 2010,
    doi:<a href="https://doi.org/10.1186/1745-6150-5-68">10.1186/1745-6150-5-68</a>.
  short: M. Breen, F. Kondrashov, Biology Direct 5 (2010).
date_created: 2018-12-11T11:49:06Z
date_published: 2010-12-31T00:00:00Z
date_updated: 2021-01-12T08:21:46Z
day: '31'
doi: 10.1186/1745-6150-5-68
extern: 1
intvolume: '         5'
month: '12'
publication: Biology Direct
publication_status: published
publisher: BioMed Central
publist_id: '6749'
quality_controlled: 0
status: public
title: Mitochondrial pathogenic mutations are population-specific
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
volume: 5
year: '2010'
...
---
_id: '9012'
abstract:
- lang: eng
  text: In this Letter, we characterize experimentally the diffusiophoretic motion
    of colloids and λ-DNA toward higher concentration of solutes, using microfluidic
    technology to build spatially and temporally controlled concentration gradients.
    We then demonstrate that segregation and spatial patterning of the particles can
    be achieved from temporal variations of the solute concentration profile. This
    segregation takes the form of a strong trapping potential, stemming from an osmotically
    induced rectification mechanism of the solute time-dependent variations. Depending
    on the spatial and temporal symmetry of the solute signal, localization patterns
    with various shapes can be achieved. These results highlight the role of solute
    contrasts in out-of-equilibrium processes occurring in soft matter.
article_number: '138302'
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Jérémie A
  full_name: Palacci, Jérémie A
  id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
  last_name: Palacci
  orcid: 0000-0002-7253-9465
- first_name: Benjamin
  full_name: Abécassis, Benjamin
  last_name: Abécassis
- first_name: Cécile
  full_name: Cottin-Bizonne, Cécile
  last_name: Cottin-Bizonne
- first_name: Christophe
  full_name: Ybert, Christophe
  last_name: Ybert
- first_name: Lydéric
  full_name: Bocquet, Lydéric
  last_name: Bocquet
citation:
  ama: Palacci JA, Abécassis B, Cottin-Bizonne C, Ybert C, Bocquet L. Colloidal motility
    and pattern formation under rectified diffusiophoresis. <i>Physical Review Letters</i>.
    2010;104(13). doi:<a href="https://doi.org/10.1103/physrevlett.104.138302">10.1103/physrevlett.104.138302</a>
  apa: Palacci, J. A., Abécassis, B., Cottin-Bizonne, C., Ybert, C., &#38; Bocquet,
    L. (2010). Colloidal motility and pattern formation under rectified diffusiophoresis.
    <i>Physical Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/physrevlett.104.138302">https://doi.org/10.1103/physrevlett.104.138302</a>
  chicago: Palacci, Jérémie A, Benjamin Abécassis, Cécile Cottin-Bizonne, Christophe
    Ybert, and Lydéric Bocquet. “Colloidal Motility and Pattern Formation under Rectified
    Diffusiophoresis.” <i>Physical Review Letters</i>. American Physical Society,
    2010. <a href="https://doi.org/10.1103/physrevlett.104.138302">https://doi.org/10.1103/physrevlett.104.138302</a>.
  ieee: J. A. Palacci, B. Abécassis, C. Cottin-Bizonne, C. Ybert, and L. Bocquet,
    “Colloidal motility and pattern formation under rectified diffusiophoresis,” <i>Physical
    Review Letters</i>, vol. 104, no. 13. American Physical Society, 2010.
  ista: Palacci JA, Abécassis B, Cottin-Bizonne C, Ybert C, Bocquet L. 2010. Colloidal
    motility and pattern formation under rectified diffusiophoresis. Physical Review
    Letters. 104(13), 138302.
  mla: Palacci, Jérémie A., et al. “Colloidal Motility and Pattern Formation under
    Rectified Diffusiophoresis.” <i>Physical Review Letters</i>, vol. 104, no. 13,
    138302, American Physical Society, 2010, doi:<a href="https://doi.org/10.1103/physrevlett.104.138302">10.1103/physrevlett.104.138302</a>.
  short: J.A. Palacci, B. Abécassis, C. Cottin-Bizonne, C. Ybert, L. Bocquet, Physical
    Review Letters 104 (2010).
date_created: 2021-01-19T10:25:04Z
date_published: 2010-04-02T00:00:00Z
date_updated: 2023-02-23T13:46:40Z
day: '02'
doi: 10.1103/physrevlett.104.138302
extern: '1'
external_id:
  arxiv:
  - '1004.1256 '
  pmid:
  - '20481918'
intvolume: '       104'
issue: '13'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1004.1256
month: '04'
oa: 1
oa_version: Preprint
pmid: 1
publication: Physical Review Letters
publication_identifier:
  eissn:
  - '10797114'
  issn:
  - '00319007'
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Colloidal motility and pattern formation under rectified diffusiophoresis
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 104
year: '2010'
...
---
_id: '9013'
abstract:
- lang: eng
  text: In this Letter, we investigate experimentally the nonequilibrium steady state
    of an active colloidal suspension under gravity field. The active particles are
    made of chemically powered colloids, showing self propulsion in the presence of
    an added fuel, here hydrogen peroxide. The active suspension is studied in a dedicated
    microfluidic device, made of permeable gel microstructures. Both the microdynamics
    of individual colloids and the global stationary state of the suspension under
    gravity are measured with optical microscopy. This yields a direct measurement
    of the effective temperature of the active system as a function of the particle
    activity, on the basis of the fluctuation-dissipation relationship. Our work is
    a first step in the experimental exploration of the out-of-equilibrium properties
    of active colloidal systems.
article_number: '088304'
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Jérémie A
  full_name: Palacci, Jérémie A
  id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
  last_name: Palacci
  orcid: 0000-0002-7253-9465
- first_name: Cécile
  full_name: Cottin-Bizonne, Cécile
  last_name: Cottin-Bizonne
- first_name: Christophe
  full_name: Ybert, Christophe
  last_name: Ybert
- first_name: Lydéric
  full_name: Bocquet, Lydéric
  last_name: Bocquet
citation:
  ama: Palacci JA, Cottin-Bizonne C, Ybert C, Bocquet L. Sedimentation and effective
    temperature of active colloidal suspensions. <i>Physical Review Letters</i>. 2010;105(8).
    doi:<a href="https://doi.org/10.1103/physrevlett.105.088304">10.1103/physrevlett.105.088304</a>
  apa: Palacci, J. A., Cottin-Bizonne, C., Ybert, C., &#38; Bocquet, L. (2010). Sedimentation
    and effective temperature of active colloidal suspensions. <i>Physical Review
    Letters</i>. American Physical Society . <a href="https://doi.org/10.1103/physrevlett.105.088304">https://doi.org/10.1103/physrevlett.105.088304</a>
  chicago: Palacci, Jérémie A, Cécile Cottin-Bizonne, Christophe Ybert, and Lydéric
    Bocquet. “Sedimentation and Effective Temperature of Active Colloidal Suspensions.”
    <i>Physical Review Letters</i>. American Physical Society , 2010. <a href="https://doi.org/10.1103/physrevlett.105.088304">https://doi.org/10.1103/physrevlett.105.088304</a>.
  ieee: J. A. Palacci, C. Cottin-Bizonne, C. Ybert, and L. Bocquet, “Sedimentation
    and effective temperature of active colloidal suspensions,” <i>Physical Review
    Letters</i>, vol. 105, no. 8. American Physical Society , 2010.
  ista: Palacci JA, Cottin-Bizonne C, Ybert C, Bocquet L. 2010. Sedimentation and
    effective temperature of active colloidal suspensions. Physical Review Letters.
    105(8), 088304.
  mla: Palacci, Jérémie A., et al. “Sedimentation and Effective Temperature of Active
    Colloidal Suspensions.” <i>Physical Review Letters</i>, vol. 105, no. 8, 088304,
    American Physical Society , 2010, doi:<a href="https://doi.org/10.1103/physrevlett.105.088304">10.1103/physrevlett.105.088304</a>.
  short: J.A. Palacci, C. Cottin-Bizonne, C. Ybert, L. Bocquet, Physical Review Letters
    105 (2010).
date_created: 2021-01-19T10:26:33Z
date_published: 2010-08-20T00:00:00Z
date_updated: 2023-02-23T13:46:42Z
day: '20'
doi: 10.1103/physrevlett.105.088304
extern: '1'
external_id:
  arxiv:
  - '1004.4340'
  pmid:
  - '20868136'
intvolume: '       105'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1004.4340
month: '08'
oa: 1
oa_version: Preprint
pmid: 1
publication: Physical Review Letters
publication_identifier:
  eissn:
  - '10797114'
  issn:
  - '00319007'
publication_status: published
publisher: 'American Physical Society '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sedimentation and effective temperature of active colloidal suspensions
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 105
year: '2010'
...
---
_id: '9145'
abstract:
- lang: eng
  text: "We have found a new way to express the solutions of the RSM (Reynolds Stress
    Model) equations that allows us to present the turbulent diffusivities for heat,
    salt and momentum in a way that is considerably simpler and thus easier to implement
    than in previous work. The RSM provides the dimensionless mixing efficiencies
    Γα (α stands for heat, salt and momentum). However, to compute the diffusivities,
    one needs additional information, specifically, the dissipation ε. Since a dynamic
    equation for the latter that includes the physical processes relevant to the ocean
    is still not available, one must resort to different sources of information outside
    the RSM to obtain a complete Mixing Scheme usable in OGCMs.\r\nAs for the RSM
    results, we show that the Γα’s are functions of both Ri and Rρ (Richardson number
    and density ratio representing double diffusion, DD); the Γα are different for
    heat, salt and momentum; in the case of heat, the traditional value Γh = 0.2 is
    valid only in the presence of strong shear (when DD is inoperative) while when
    shear subsides, NATRE data show that Γh can be three times as large, a result
    that we reproduce. The salt Γs is given in terms of Γh. The momentum Γm has thus
    far been guessed with different prescriptions while the RSM provides a well defined
    expression for Γm(Ri, Rρ). Having tested Γh, we then test the momentum Γm by showing
    that the turbulent Prandtl number Γm/Γh vs. Ri reproduces the available data quite
    well.\r\n\r\nAs for the dissipation ε, we use different representations, one for
    the mixed layer (ML), one for the thermocline and one for the ocean’s bottom.
    For the ML, we adopt a procedure analogous to the one successfully used in PB
    (planetary boundary layer) studies; for the thermocline, we employ an expression
    for the variable εN−2 from studies of the internal gravity waves spectra which
    includes a latitude dependence; for the ocean bottom, we adopt the enhanced bottom
    diffusivity expression used by previous authors but with a state of the art internal
    tidal energy formulation and replace the fixed Γα = 0.2 with the RSM result that
    brings into the problem the Ri, Rρ dependence of the Γα; the unresolved bottom
    drag, which has thus far been either ignored or modeled with heuristic relations,
    is modeled using a formalism we previously developed and tested in PBL studies.\r\nWe
    carried out several tests without an OGCM. Prandtl and flux Richardson numbers
    vs. Ri. The RSM model reproduces both types of data satisfactorily. DD and Mixing
    efficiency Γh(Ri, Rρ). The RSM model reproduces well the NATRE data. Bimodal ε-distribution.
    NATRE data show that ε(Ri < 1) ≈ 10ε(Ri > 1), which our model reproduces. Heat
    to salt flux ratio. In the Ri ≫ 1 regime, the RSM predictions reproduce the data
    satisfactorily. NATRE mass diffusivity. The z-profile of the mass diffusivity
    reproduces well the measurements at NATRE. The local form of the mixing scheme
    is algebraic with one cubic equation to solve."
article_processing_charge: No
article_type: original
author:
- first_name: V.M.
  full_name: Canuto, V.M.
  last_name: Canuto
- first_name: A.M.
  full_name: Howard, A.M.
  last_name: Howard
- first_name: Y.
  full_name: Cheng, Y.
  last_name: Cheng
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
- first_name: A.
  full_name: Leboissetier, A.
  last_name: Leboissetier
- first_name: S.R.
  full_name: Jayne, S.R.
  last_name: Jayne
citation:
  ama: 'Canuto VM, Howard AM, Cheng Y, Muller CJ, Leboissetier A, Jayne SR. Ocean
    turbulence, III: New GISS vertical mixing scheme. <i>Ocean Modelling</i>. 2010;34(3-4):70-91.
    doi:<a href="https://doi.org/10.1016/j.ocemod.2010.04.006">10.1016/j.ocemod.2010.04.006</a>'
  apa: 'Canuto, V. M., Howard, A. M., Cheng, Y., Muller, C. J., Leboissetier, A.,
    &#38; Jayne, S. R. (2010). Ocean turbulence, III: New GISS vertical mixing scheme.
    <i>Ocean Modelling</i>. Elsevier. <a href="https://doi.org/10.1016/j.ocemod.2010.04.006">https://doi.org/10.1016/j.ocemod.2010.04.006</a>'
  chicago: 'Canuto, V.M., A.M. Howard, Y. Cheng, Caroline J Muller, A. Leboissetier,
    and S.R. Jayne. “Ocean Turbulence, III: New GISS Vertical Mixing Scheme.” <i>Ocean
    Modelling</i>. Elsevier, 2010. <a href="https://doi.org/10.1016/j.ocemod.2010.04.006">https://doi.org/10.1016/j.ocemod.2010.04.006</a>.'
  ieee: 'V. M. Canuto, A. M. Howard, Y. Cheng, C. J. Muller, A. Leboissetier, and
    S. R. Jayne, “Ocean turbulence, III: New GISS vertical mixing scheme,” <i>Ocean
    Modelling</i>, vol. 34, no. 3–4. Elsevier, pp. 70–91, 2010.'
  ista: 'Canuto VM, Howard AM, Cheng Y, Muller CJ, Leboissetier A, Jayne SR. 2010.
    Ocean turbulence, III: New GISS vertical mixing scheme. Ocean Modelling. 34(3–4),
    70–91.'
  mla: 'Canuto, V. M., et al. “Ocean Turbulence, III: New GISS Vertical Mixing Scheme.”
    <i>Ocean Modelling</i>, vol. 34, no. 3–4, Elsevier, 2010, pp. 70–91, doi:<a href="https://doi.org/10.1016/j.ocemod.2010.04.006">10.1016/j.ocemod.2010.04.006</a>.'
  short: V.M. Canuto, A.M. Howard, Y. Cheng, C.J. Muller, A. Leboissetier, S.R. Jayne,
    Ocean Modelling 34 (2010) 70–91.
date_created: 2021-02-15T14:40:19Z
date_published: 2010-05-12T00:00:00Z
date_updated: 2022-01-24T13:51:35Z
day: '12'
doi: 10.1016/j.ocemod.2010.04.006
extern: '1'
intvolume: '        34'
issue: 3-4
keyword:
- Computer Science (miscellaneous)
- Geotechnical Engineering and Engineering Geology
- Atmospheric Science
- Oceanography
language:
- iso: eng
month: '05'
oa_version: None
page: 70-91
publication: Ocean Modelling
publication_identifier:
  issn:
  - 1463-5003
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Ocean turbulence, III: New GISS vertical mixing scheme'
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 34
year: '2010'
...
---
_id: '9146'
abstract:
- lang: eng
  text: "The factors governing the rate of change in the amount of atmospheric water
    vapor are analyzed in simulations of climate change. The global-mean amount of
    water vapor is estimated to increase at a differential rate of 7.3% K − 1 with
    respect to global-mean surface air temperature in the multi-model mean. Larger
    rates of change result if the fractional change is evaluated over a finite change
    in temperature (e.g., 8.2% K − 1 for a 3 K warming), and rates of change of zonal-mean
    column water vapor range from 6 to 12% K − 1 depending on latitude.\r\nClausius–Clapeyron
    scaling is directly evaluated using an invariant distribution of monthly-mean
    relative humidity, giving a rate of 7.4% K − 1 for global-mean water vapor. There
    are deviations from Clausius–Clapeyron scaling of zonal-mean column water vapor
    in the tropics and mid-latitudes, but they largely cancel in the global mean.
    A purely thermodynamic scaling based on a saturated troposphere gives a higher
    global rate of 7.9% K − 1.\r\nSurface specific humidity increases at a rate of
    5.7% K − 1, considerably lower than the rate for global-mean water vapor. Surface
    specific humidity closely follows Clausius–Clapeyron scaling over ocean. But there
    are widespread decreases in surface relative humidity over land (by more than
    1% K − 1 in many regions), and it is argued that decreases of this magnitude could
    result from the land/ocean contrast in surface warming."
article_number: '025207'
article_processing_charge: No
article_type: original
author:
- first_name: P A
  full_name: O’Gorman, P A
  last_name: O’Gorman
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
citation:
  ama: O’Gorman PA, Muller CJ. How closely do changes in surface and column water
    vapor follow Clausius–Clapeyron scaling in climate change simulations? <i>Environmental
    Research Letters</i>. 2010;5(2). doi:<a href="https://doi.org/10.1088/1748-9326/5/2/025207">10.1088/1748-9326/5/2/025207</a>
  apa: O’Gorman, P. A., &#38; Muller, C. J. (2010). How closely do changes in surface
    and column water vapor follow Clausius–Clapeyron scaling in climate change simulations?
    <i>Environmental Research Letters</i>. IOP Publishing. <a href="https://doi.org/10.1088/1748-9326/5/2/025207">https://doi.org/10.1088/1748-9326/5/2/025207</a>
  chicago: O’Gorman, P A, and Caroline J Muller. “How Closely Do Changes in Surface
    and Column Water Vapor Follow Clausius–Clapeyron Scaling in Climate Change Simulations?”
    <i>Environmental Research Letters</i>. IOP Publishing, 2010. <a href="https://doi.org/10.1088/1748-9326/5/2/025207">https://doi.org/10.1088/1748-9326/5/2/025207</a>.
  ieee: P. A. O’Gorman and C. J. Muller, “How closely do changes in surface and column
    water vapor follow Clausius–Clapeyron scaling in climate change simulations?,”
    <i>Environmental Research Letters</i>, vol. 5, no. 2. IOP Publishing, 2010.
  ista: O’Gorman PA, Muller CJ. 2010. How closely do changes in surface and column
    water vapor follow Clausius–Clapeyron scaling in climate change simulations? Environmental
    Research Letters. 5(2), 025207.
  mla: O’Gorman, P. A., and Caroline J. Muller. “How Closely Do Changes in Surface
    and Column Water Vapor Follow Clausius–Clapeyron Scaling in Climate Change Simulations?”
    <i>Environmental Research Letters</i>, vol. 5, no. 2, 025207, IOP Publishing,
    2010, doi:<a href="https://doi.org/10.1088/1748-9326/5/2/025207">10.1088/1748-9326/5/2/025207</a>.
  short: P.A. O’Gorman, C.J. Muller, Environmental Research Letters 5 (2010).
date_created: 2021-02-15T14:40:46Z
date_published: 2010-04-09T00:00:00Z
date_updated: 2022-01-24T13:51:02Z
day: '09'
doi: 10.1088/1748-9326/5/2/025207
extern: '1'
intvolume: '         5'
issue: '2'
keyword:
- Renewable Energy
- Sustainability and the Environment
- Public Health
- Environmental and Occupational Health
- General Environmental Science
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1088/1748-9326/5/2/025207
month: '04'
oa: 1
oa_version: Published Version
publication: Environmental Research Letters
publication_identifier:
  issn:
  - 1748-9326
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: How closely do changes in surface and column water vapor follow Clausius–Clapeyron
  scaling in climate change simulations?
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 5
year: '2010'
...
---
_id: '920'
abstract:
- lang: eng
  text: Most eukaryotic cells sense and respond to the mechanical properties of their
    surroundings. This can strongly influence their collective behavior in embryonic
    development, tissue function, and wound healing. We use a deformable substrate
    to measure collective behavior in cell motion due to substrate mediated cell-cell
    interactions. We quantify spatial and temporal correlations in migration velocity
    and substrate deformation, and show that cooperative cell-driven patterns of substrate
    deformation mediate long-distance mechanical coupling between cells and control
    collective cell migration.
acknowledgement: "This work was supported by the NSF (DMR-0602684) and the Harvard
  MRSEC (DMR-0820484).\r\nWe would like to thank Dr. James Butler for helpful conversations."
article_processing_charge: No
author:
- first_name: Thomas
  full_name: Angelini, Thomas
  last_name: Angelini
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Xavier
  full_name: Trepat, Xavier
  last_name: Trepat
- first_name: Jeffrey
  full_name: Fredberg, Jeffrey
  last_name: Fredberg
- first_name: David
  full_name: Weitz, David
  last_name: Weitz
citation:
  ama: Angelini T, Hannezo EB, Trepat X, Fredberg J, Weitz D. Cell migration driven
    by cooperative substrate deformation patterns. <i>Physical Review Letters</i>.
    2010;104(16). doi:<a href="https://doi.org/10.1103/PhysRevLett.104.168104">10.1103/PhysRevLett.104.168104</a>
  apa: Angelini, T., Hannezo, E. B., Trepat, X., Fredberg, J., &#38; Weitz, D. (2010).
    Cell migration driven by cooperative substrate deformation patterns. <i>Physical
    Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.104.168104">https://doi.org/10.1103/PhysRevLett.104.168104</a>
  chicago: Angelini, Thomas, Edouard B Hannezo, Xavier Trepat, Jeffrey Fredberg, and
    David Weitz. “Cell Migration Driven by Cooperative Substrate Deformation Patterns.”
    <i>Physical Review Letters</i>. American Physical Society, 2010. <a href="https://doi.org/10.1103/PhysRevLett.104.168104">https://doi.org/10.1103/PhysRevLett.104.168104</a>.
  ieee: T. Angelini, E. B. Hannezo, X. Trepat, J. Fredberg, and D. Weitz, “Cell migration
    driven by cooperative substrate deformation patterns,” <i>Physical Review Letters</i>,
    vol. 104, no. 16. American Physical Society, 2010.
  ista: Angelini T, Hannezo EB, Trepat X, Fredberg J, Weitz D. 2010. Cell migration
    driven by cooperative substrate deformation patterns. Physical Review Letters.
    104(16).
  mla: Angelini, Thomas, et al. “Cell Migration Driven by Cooperative Substrate Deformation
    Patterns.” <i>Physical Review Letters</i>, vol. 104, no. 16, American Physical
    Society, 2010, doi:<a href="https://doi.org/10.1103/PhysRevLett.104.168104">10.1103/PhysRevLett.104.168104</a>.
  short: T. Angelini, E.B. Hannezo, X. Trepat, J. Fredberg, D. Weitz, Physical Review
    Letters 104 (2010).
date_created: 2018-12-11T11:49:12Z
date_published: 2010-04-23T00:00:00Z
date_updated: 2021-01-12T08:21:55Z
day: '23'
doi: 10.1103/PhysRevLett.104.168104
extern: '1'
intvolume: '       104'
issue: '16'
language:
- iso: eng
month: '04'
oa_version: None
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6523'
status: public
title: Cell migration driven by cooperative substrate deformation patterns
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 104
year: '2010'
...
---
_id: '7078'
abstract:
- lang: eng
  text: We report resonant ultrasound spectroscopy (RUS), dilatometry/magnetostriction,
    magnetotransport, magnetization, specific-heat, and 119Sn Mössbauer spectroscopy
    measurements on SnTe and Sn0.995Cr0.005Te. Hall measurements at T=77 K indicate
    that our Bridgman-grown single crystals have a p-type carrier concentration of
    3.4×1019 cm−3 and that our Cr-doped crystals have an n-type concentration of 5.8×1022 cm−3.
    Although our SnTe crystals are diamagnetic over the temperature range 2≤T≤1100 K,
    the Cr-doped crystals are room-temperature ferromagnets with a Curie temperature
    of 294 K. For each sample type, three-terminal capacitive dilatometry measurements
    detect a subtle 0.5 μm distortion at Tc≈85 K. Whereas our RUS measurements on
    SnTe show elastic hardening near the structural transition, pointing to co-elastic
    behavior, similar measurements on Sn0.995Cr0.005Te show a pronounced softening,
    pointing to ferroelastic behavior. Effective Debye temperature, θD, values of
    SnTe obtained from 119Sn Mössbauer studies show a hardening of phonons in the
    range 60–115 K (θD=162 K) as compared with the 100–300 K range (θD=150 K). In
    addition, a precursor softening extending over approximately 100 K anticipates
    this collapse at the critical temperature and quantitative analysis over three
    decades of its reduced modulus finds ΔC44/C44=A|(T−T0)/T0|−κ with κ=0.50±0.02,
    a value indicating a three-dimensional softening of phonon branches at a temperature
    T0∼75 K, considerably below Tc. We suggest that the differences in these two types
    of elastic behaviors lie in the absence of elastic domain-wall motion in the one
    case and their nucleation in the other.
article_number: '184112'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: E. K. H.
  full_name: Salje, E. K. H.
  last_name: Salje
- first_name: D. J.
  full_name: Safarik, D. J.
  last_name: Safarik
- first_name: Kimberly A
  full_name: Modic, Kimberly A
  id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
  last_name: Modic
  orcid: 0000-0001-9760-3147
- first_name: J. E.
  full_name: Gubernatis, J. E.
  last_name: Gubernatis
- first_name: J. C.
  full_name: Cooley, J. C.
  last_name: Cooley
- first_name: R. D.
  full_name: Taylor, R. D.
  last_name: Taylor
- first_name: B.
  full_name: Mihaila, B.
  last_name: Mihaila
- first_name: A.
  full_name: Saxena, A.
  last_name: Saxena
- first_name: T.
  full_name: Lookman, T.
  last_name: Lookman
- first_name: J. L.
  full_name: Smith, J. L.
  last_name: Smith
- first_name: R. A.
  full_name: Fisher, R. A.
  last_name: Fisher
- first_name: M.
  full_name: Pasternak, M.
  last_name: Pasternak
- first_name: C. P.
  full_name: Opeil, C. P.
  last_name: Opeil
- first_name: T.
  full_name: Siegrist, T.
  last_name: Siegrist
- first_name: P. B.
  full_name: Littlewood, P. B.
  last_name: Littlewood
- first_name: J. C.
  full_name: Lashley, J. C.
  last_name: Lashley
citation:
  ama: 'Salje EKH, Safarik DJ, Modic KA, et al. Tin telluride: A weakly co-elastic
    metal. <i>Physical Review B</i>. 2010;82(18). doi:<a href="https://doi.org/10.1103/physrevb.82.184112">10.1103/physrevb.82.184112</a>'
  apa: 'Salje, E. K. H., Safarik, D. J., Modic, K. A., Gubernatis, J. E., Cooley,
    J. C., Taylor, R. D., … Lashley, J. C. (2010). Tin telluride: A weakly co-elastic
    metal. <i>Physical Review B</i>. APS. <a href="https://doi.org/10.1103/physrevb.82.184112">https://doi.org/10.1103/physrevb.82.184112</a>'
  chicago: 'Salje, E. K. H., D. J. Safarik, Kimberly A Modic, J. E. Gubernatis, J.
    C. Cooley, R. D. Taylor, B. Mihaila, et al. “Tin Telluride: A Weakly Co-Elastic
    Metal.” <i>Physical Review B</i>. APS, 2010. <a href="https://doi.org/10.1103/physrevb.82.184112">https://doi.org/10.1103/physrevb.82.184112</a>.'
  ieee: 'E. K. H. Salje <i>et al.</i>, “Tin telluride: A weakly co-elastic metal,”
    <i>Physical Review B</i>, vol. 82, no. 18. APS, 2010.'
  ista: 'Salje EKH, Safarik DJ, Modic KA, Gubernatis JE, Cooley JC, Taylor RD, Mihaila
    B, Saxena A, Lookman T, Smith JL, Fisher RA, Pasternak M, Opeil CP, Siegrist T,
    Littlewood PB, Lashley JC. 2010. Tin telluride: A weakly co-elastic metal. Physical
    Review B. 82(18), 184112.'
  mla: 'Salje, E. K. H., et al. “Tin Telluride: A Weakly Co-Elastic Metal.” <i>Physical
    Review B</i>, vol. 82, no. 18, 184112, APS, 2010, doi:<a href="https://doi.org/10.1103/physrevb.82.184112">10.1103/physrevb.82.184112</a>.'
  short: E.K.H. Salje, D.J. Safarik, K.A. Modic, J.E. Gubernatis, J.C. Cooley, R.D.
    Taylor, B. Mihaila, A. Saxena, T. Lookman, J.L. Smith, R.A. Fisher, M. Pasternak,
    C.P. Opeil, T. Siegrist, P.B. Littlewood, J.C. Lashley, Physical Review B 82 (2010).
date_created: 2019-11-19T13:46:28Z
date_published: 2010-11-18T00:00:00Z
date_updated: 2021-01-12T08:11:44Z
day: '18'
doi: 10.1103/physrevb.82.184112
extern: '1'
external_id:
  arxiv:
  - '1011.1445'
intvolume: '        82'
issue: '18'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1011.1445
month: '11'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_identifier:
  issn:
  - 1098-0121
  - 1550-235X
publication_status: published
publisher: APS
quality_controlled: '1'
status: public
title: 'Tin telluride: A weakly co-elastic metal'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 82
year: '2010'
...
---
_id: '7079'
abstract:
- lang: eng
  text: We have observed that reacting Pb:Te:Ag:Se in a 1:1:1.9:1 molar ratio gives
    rise to what appears to be a predominantly single-phase alloy, which crystallizes
    in the PbSe cF8 fcc structure. However, further investigation of the structure
    using energy dispersive x-ray analysis reveals the presence of two phases, PbSe
    and β-Ag2Te, with identical lattice parameters. The total thermal conductivity
    of the formed alloy is remarkably low for a crystalline material, κT<0.6W∕mK at
    675K, it is reproducible, and in addition, the compound has good mechanical properties.
article_number: '033519'
article_processing_charge: No
article_type: original
author:
- first_name: Fivos R.
  full_name: Drymiotis, Fivos R.
  last_name: Drymiotis
- first_name: Tyler B.
  full_name: Drye, Tyler B.
  last_name: Drye
- first_name: Yisha
  full_name: Wang, Yisha
  last_name: Wang
- first_name: Jian
  full_name: He, Jian
  last_name: He
- first_name: Daniel
  full_name: Rhodes, Daniel
  last_name: Rhodes
- first_name: Kimberly A
  full_name: Modic, Kimberly A
  id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
  last_name: Modic
  orcid: 0000-0001-9760-3147
- first_name: Samantha
  full_name: Cawthorne, Samantha
  last_name: Cawthorne
- first_name: Qiu Run
  full_name: Zhang, Qiu Run
  last_name: Zhang
citation:
  ama: Drymiotis FR, Drye TB, Wang Y, et al. Structure formation and very low thermal
    conductivity in Pb:Te:Ag:Se mixtures. <i>Journal of Applied Physics</i>. 2010;107(3).
    doi:<a href="https://doi.org/10.1063/1.3284946">10.1063/1.3284946</a>
  apa: Drymiotis, F. R., Drye, T. B., Wang, Y., He, J., Rhodes, D., Modic, K. A.,
    … Zhang, Q. R. (2010). Structure formation and very low thermal conductivity in
    Pb:Te:Ag:Se mixtures. <i>Journal of Applied Physics</i>. AIP. <a href="https://doi.org/10.1063/1.3284946">https://doi.org/10.1063/1.3284946</a>
  chicago: Drymiotis, Fivos R., Tyler B. Drye, Yisha Wang, Jian He, Daniel Rhodes,
    Kimberly A Modic, Samantha Cawthorne, and Qiu Run Zhang. “Structure Formation
    and Very Low Thermal Conductivity in Pb:Te:Ag:Se Mixtures.” <i>Journal of Applied
    Physics</i>. AIP, 2010. <a href="https://doi.org/10.1063/1.3284946">https://doi.org/10.1063/1.3284946</a>.
  ieee: F. R. Drymiotis <i>et al.</i>, “Structure formation and very low thermal conductivity
    in Pb:Te:Ag:Se mixtures,” <i>Journal of Applied Physics</i>, vol. 107, no. 3.
    AIP, 2010.
  ista: Drymiotis FR, Drye TB, Wang Y, He J, Rhodes D, Modic KA, Cawthorne S, Zhang
    QR. 2010. Structure formation and very low thermal conductivity in Pb:Te:Ag:Se
    mixtures. Journal of Applied Physics. 107(3), 033519.
  mla: Drymiotis, Fivos R., et al. “Structure Formation and Very Low Thermal Conductivity
    in Pb:Te:Ag:Se Mixtures.” <i>Journal of Applied Physics</i>, vol. 107, no. 3,
    033519, AIP, 2010, doi:<a href="https://doi.org/10.1063/1.3284946">10.1063/1.3284946</a>.
  short: F.R. Drymiotis, T.B. Drye, Y. Wang, J. He, D. Rhodes, K.A. Modic, S. Cawthorne,
    Q.R. Zhang, Journal of Applied Physics 107 (2010).
date_created: 2019-11-19T13:47:24Z
date_published: 2010-02-09T00:00:00Z
date_updated: 2021-01-12T08:11:44Z
day: '09'
doi: 10.1063/1.3284946
extern: '1'
intvolume: '       107'
issue: '3'
language:
- iso: eng
month: '02'
oa_version: None
publication: Journal of Applied Physics
publication_identifier:
  issn:
  - 0021-8979
  - 1089-7550
publication_status: published
publisher: AIP
quality_controlled: '1'
status: public
title: Structure formation and very low thermal conductivity in Pb:Te:Ag:Se mixtures
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 107
year: '2010'
...
---
_id: '7318'
abstract:
- lang: eng
  text: The decomposition reaction of H2O2 aqueous solutions (H2O2 - H2O + 1/2O2)
    catalyzed by transition metal oxide powders has been compared with the charging
    voltage of nonaqueous Li-O2 cells containing the same catalyst. An inverse linear
    relationship between Ln k (rate constant for the H2O2 decomposition) and the charging
    voltage has been found, despite differences in media and possible mechanistic
    differences. The results suggest that the decomposition may be a reliable, useful,
    and fast screening tool for materials that promote the charging process of the
    Li-O2 battery and may ultimately give insight into the charging mechanism.
article_number: A180
article_processing_charge: No
article_type: letter_note
author:
- first_name: V.
  full_name: Giordani, V.
  last_name: Giordani
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: P. G.
  full_name: Bruce, P. G.
  last_name: Bruce
- first_name: J.-M.
  full_name: Tarascon, J.-M.
  last_name: Tarascon
- first_name: D.
  full_name: Larcher, D.
  last_name: Larcher
citation:
  ama: Giordani V, Freunberger SA, Bruce PG, Tarascon J-M, Larcher D. H2O2 decomposition
    reaction as selecting tool for catalysts in Li–O2 cells. <i>Electrochemical and
    Solid-State Letters</i>. 2010;13(12). doi:<a href="https://doi.org/10.1149/1.3494045">10.1149/1.3494045</a>
  apa: Giordani, V., Freunberger, S. A., Bruce, P. G., Tarascon, J.-M., &#38; Larcher,
    D. (2010). H2O2 decomposition reaction as selecting tool for catalysts in Li–O2
    cells. <i>Electrochemical and Solid-State Letters</i>. The Electrochemical Society.
    <a href="https://doi.org/10.1149/1.3494045">https://doi.org/10.1149/1.3494045</a>
  chicago: Giordani, V., Stefan Alexander Freunberger, P. G. Bruce, J.-M. Tarascon,
    and D. Larcher. “H2O2 Decomposition Reaction as Selecting Tool for Catalysts in
    Li–O2 Cells.” <i>Electrochemical and Solid-State Letters</i>. The Electrochemical
    Society, 2010. <a href="https://doi.org/10.1149/1.3494045">https://doi.org/10.1149/1.3494045</a>.
  ieee: V. Giordani, S. A. Freunberger, P. G. Bruce, J.-M. Tarascon, and D. Larcher,
    “H2O2 decomposition reaction as selecting tool for catalysts in Li–O2 cells,”
    <i>Electrochemical and Solid-State Letters</i>, vol. 13, no. 12. The Electrochemical
    Society, 2010.
  ista: Giordani V, Freunberger SA, Bruce PG, Tarascon J-M, Larcher D. 2010. H2O2
    decomposition reaction as selecting tool for catalysts in Li–O2 cells. Electrochemical
    and Solid-State Letters. 13(12), A180.
  mla: Giordani, V., et al. “H2O2 Decomposition Reaction as Selecting Tool for Catalysts
    in Li–O2 Cells.” <i>Electrochemical and Solid-State Letters</i>, vol. 13, no.
    12, A180, The Electrochemical Society, 2010, doi:<a href="https://doi.org/10.1149/1.3494045">10.1149/1.3494045</a>.
  short: V. Giordani, S.A. Freunberger, P.G. Bruce, J.-M. Tarascon, D. Larcher, Electrochemical
    and Solid-State Letters 13 (2010).
date_created: 2020-01-15T12:21:06Z
date_published: 2010-10-04T00:00:00Z
date_updated: 2021-01-12T08:13:01Z
day: '04'
doi: 10.1149/1.3494045
extern: '1'
intvolume: '        13'
issue: '12'
language:
- iso: eng
month: '10'
oa_version: None
publication: Electrochemical and Solid-State Letters
publication_identifier:
  issn:
  - 1099-0062
publication_status: published
publisher: The Electrochemical Society
quality_controlled: '1'
status: public
title: H2O2 decomposition reaction as selecting tool for catalysts in Li–O2 cells
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2010'
...
---
_id: '754'
abstract:
- lang: eng
  text: 'Most people believe that renaming is easy: simply choose a name at random;
    if more than one process selects the same name, then try again. We highlight the
    issues that occur when trying to implement such a scheme and shed new light on
    the read-write complexity of randomized renaming in an asynchronous environment.
    At the heart of our new perspective stands an adaptive implementation of a randomized
    test-and-set object, that has poly-logarithmic step complexity per operation,
    with high probability. Interestingly, our implementation is anonymous, as it does
    not require process identifiers. Based on this implementation, we present two
    new randomized renaming algorithms. The first ensures a tight namespace of n names
    using O( n log4 n) total steps, with high probability. This significantly improves
    on the complexity of the best previously known namespace-optimal algorithms. The
    second algorithm achieves a namespace of size k (1 + ε) using O( k log4 k / log2
    (1 + ε) ) total steps, both with high probability, where k is the total contention
    in the execution. It is the first adaptive randomized renaming algorithm, and
    it improves on existing deterministic solutions by providing a smaller namespace,
    and by lowering step complexity.'
acknowledgement: The work of Dan Alistarh is supported by the Swiss NCCR MICS project.
  The work of Hagit Attiya is supported in part by the Israel Science Foundation (grant
  number 953/06).
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Hagit
  full_name: Attiya, Hagit
  last_name: Attiya
- first_name: Seth
  full_name: Gilbert, Seth
  last_name: Gilbert
- first_name: Andrei
  full_name: Giurgiu, Andrei
  last_name: Giurgiu
- first_name: Rachid
  full_name: Guerraoui, Rachid
  last_name: Guerraoui
citation:
  ama: 'Alistarh D-A, Attiya H, Gilbert S, Giurgiu A, Guerraoui R. Fast randomized
    test-and-set and renaming. In: Vol 6343 LNCS. Springer; 2010:94-108. doi:<a href="https://doi.org/10.1007/978-3-642-15763-9_9">10.1007/978-3-642-15763-9_9</a>'
  apa: 'Alistarh, D.-A., Attiya, H., Gilbert, S., Giurgiu, A., &#38; Guerraoui, R.
    (2010). Fast randomized test-and-set and renaming (Vol. 6343 LNCS, pp. 94–108).
    Presented at the DISC: Distributed Computing, Springer. <a href="https://doi.org/10.1007/978-3-642-15763-9_9">https://doi.org/10.1007/978-3-642-15763-9_9</a>'
  chicago: Alistarh, Dan-Adrian, Hagit Attiya, Seth Gilbert, Andrei Giurgiu, and Rachid
    Guerraoui. “Fast Randomized Test-and-Set and Renaming,” 6343 LNCS:94–108. Springer,
    2010. <a href="https://doi.org/10.1007/978-3-642-15763-9_9">https://doi.org/10.1007/978-3-642-15763-9_9</a>.
  ieee: 'D.-A. Alistarh, H. Attiya, S. Gilbert, A. Giurgiu, and R. Guerraoui, “Fast
    randomized test-and-set and renaming,” presented at the DISC: Distributed Computing,
    2010, vol. 6343 LNCS, pp. 94–108.'
  ista: 'Alistarh D-A, Attiya H, Gilbert S, Giurgiu A, Guerraoui R. 2010. Fast randomized
    test-and-set and renaming. DISC: Distributed Computing, LNCS, vol. 6343 LNCS,
    94–108.'
  mla: Alistarh, Dan-Adrian, et al. <i>Fast Randomized Test-and-Set and Renaming</i>.
    Vol. 6343 LNCS, Springer, 2010, pp. 94–108, doi:<a href="https://doi.org/10.1007/978-3-642-15763-9_9">10.1007/978-3-642-15763-9_9</a>.
  short: D.-A. Alistarh, H. Attiya, S. Gilbert, A. Giurgiu, R. Guerraoui, in:, Springer,
    2010, pp. 94–108.
conference:
  name: 'DISC: Distributed Computing'
date_created: 2018-12-11T11:48:19Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2023-02-23T13:10:21Z
day: '01'
doi: 10.1007/978-3-642-15763-9_9
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 94 - 108
publication_status: published
publisher: Springer
publist_id: '6900'
status: public
title: Fast randomized test-and-set and renaming
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6343 LNCS
year: '2010'
...
---
_id: '755'
abstract:
- lang: eng
  text: 'Gossip, also known as epidemic dissemination, is becoming an increasingly
    popular technique in distributed systems. Yet, it has remained a partially open
    question: how robust are such protocols? We consider a natural extension of the
    random phone-call model (introduced by Karp et al. [1]), and we analyze two different
    notions of robustness: the ability to tolerate adaptive failures, and the ability
    to tolerate oblivious failures. For adaptive failures, we present a new gossip
    protocol, TrickleGossip, which achieves near-optimal O(n log 3 n) message complexity.
    To the best of our knowledge, this is the first epidemic-style protocol that can
    tolerate adaptive failures. We also show a direct relation between resilience
    and message complexity, demonstrating that gossip protocols which tolerate a large
    number of adaptive failures need to use a super-linear number of messages with
    high probability. For oblivious failures, we present a new gossip protocol, CoordinatedGossip,
    that achieves optimal O(n) message complexity. This protocol makes novel use of
    the universe reduction technique to limit the message complexity.'
acknowledgement: We would like to thank Prof. Hagit Attiya and the anonymous reviewers
  for their useful comments on earlier drafts of this paper.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Seth
  full_name: Gilbert, Seth
  last_name: Gilbert
- first_name: Rachid
  full_name: Guerraoui, Rachid
  last_name: Guerraoui
- first_name: Morteza
  full_name: Zadimoghaddam, Morteza
  last_name: Zadimoghaddam
citation:
  ama: 'Alistarh D-A, Gilbert S, Guerraoui R, Zadimoghaddam M. How efficient can gossip
    be? (On the cost of resilient information exchange). In: Vol 6199 LNCS. Springer;
    2010:115-126. doi:<a href="https://doi.org/10.1007/978-3-642-14162-1_10">10.1007/978-3-642-14162-1_10</a>'
  apa: 'Alistarh, D.-A., Gilbert, S., Guerraoui, R., &#38; Zadimoghaddam, M. (2010).
    How efficient can gossip be? (On the cost of resilient information exchange) (Vol.
    6199 LNCS, pp. 115–126). Presented at the ICALP: International Colloquium on Automota,
    Languages and Programming, Springer. <a href="https://doi.org/10.1007/978-3-642-14162-1_10">https://doi.org/10.1007/978-3-642-14162-1_10</a>'
  chicago: Alistarh, Dan-Adrian, Seth Gilbert, Rachid Guerraoui, and Morteza Zadimoghaddam.
    “How Efficient Can Gossip Be? (On the Cost of Resilient Information Exchange),”
    6199 LNCS:115–26. Springer, 2010. <a href="https://doi.org/10.1007/978-3-642-14162-1_10">https://doi.org/10.1007/978-3-642-14162-1_10</a>.
  ieee: 'D.-A. Alistarh, S. Gilbert, R. Guerraoui, and M. Zadimoghaddam, “How efficient
    can gossip be? (On the cost of resilient information exchange),” presented at
    the ICALP: International Colloquium on Automota, Languages and Programming, 2010,
    vol. 6199 LNCS, no. PART 2, pp. 115–126.'
  ista: 'Alistarh D-A, Gilbert S, Guerraoui R, Zadimoghaddam M. 2010. How efficient
    can gossip be? (On the cost of resilient information exchange). ICALP: International
    Colloquium on Automota, Languages and Programming, LNCS, vol. 6199 LNCS, 115–126.'
  mla: Alistarh, Dan-Adrian, et al. <i>How Efficient Can Gossip Be? (On the Cost of
    Resilient Information Exchange)</i>. Vol. 6199 LNCS, no. PART 2, Springer, 2010,
    pp. 115–26, doi:<a href="https://doi.org/10.1007/978-3-642-14162-1_10">10.1007/978-3-642-14162-1_10</a>.
  short: D.-A. Alistarh, S. Gilbert, R. Guerraoui, M. Zadimoghaddam, in:, Springer,
    2010, pp. 115–126.
conference:
  name: 'ICALP: International Colloquium on Automota, Languages and Programming'
date_created: 2018-12-11T11:48:20Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2023-02-23T13:10:40Z
day: '01'
doi: 10.1007/978-3-642-14162-1_10
extern: '1'
issue: PART 2
language:
- iso: eng
month: '01'
oa_version: None
page: 115 - 126
publication_status: published
publisher: Springer
publist_id: '6901'
status: public
title: How efficient can gossip be? (On the cost of resilient information exchange)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6199 LNCS
year: '2010'
...
---
_id: '756'
abstract:
- lang: eng
  text: This paper studies non-cryptographic authenticated broadcast in radio networks
    subject to malicious failures. We introduce two protocols that address this problem.
    The first, NeighborWatchRB, makes use of a novel strategy in which honest devices
    monitor their neighbors for malicious behavior. Second, we present a more robust
    variant, MultiPathRB, that tolerates the maximum possible density of malicious
    devices per region, using an elaborate voting strategy. We also introduce a new
    proof technique to show that both protocols ensure asymptotically optimal running
    time. We demonstrate the fault tolerance of our protocols through extensive simulation.
    Simulations show the practical superiority of the NeighborWatchRB protocol (an
    advantage hidden in the constants of the asymptotic complexity). The NeighborWatchRB
    protocol even performs relatively well when compared to the simple, fast epidemic
    protocols commonly used in the radio setting, protocols that tolerate no malicious
    faults. We therefore believe that the overhead for ensuring authenticated broadcast
    is reasonable, especially in applications that use authenticated broadcast only
    when necessary, such as distributing an authenticated digest.
acknowledgement: "The authors would like to thank Prof. Guevara Noubir for his useful
  comments on earlier\r\ndrafts of this paper."
article_processing_charge: No
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Seth
  full_name: Gilbert, Seth
  last_name: Gilbert
- first_name: Rachid
  full_name: Guerraoui, Rachid
  last_name: Guerraoui
- first_name: Žarko
  full_name: Milošević, Žarko
  last_name: Milošević
- first_name: Calvin
  full_name: Newport, Calvin
  last_name: Newport
citation:
  ama: 'Alistarh D-A, Gilbert S, Guerraoui R, Milošević Ž, Newport C. Securing every
    bit: Authenticated broadcast in radio networks. In: ACM; 2010:50-59. doi:<a href="https://doi.org/10.1145/1810479.1810489">10.1145/1810479.1810489</a>'
  apa: 'Alistarh, D.-A., Gilbert, S., Guerraoui, R., Milošević, Ž., &#38; Newport,
    C. (2010). Securing every bit: Authenticated broadcast in radio networks (pp.
    50–59). Presented at the SPAA: Symposium on Parallelism in Algorithms and Architectures,
    ACM. <a href="https://doi.org/10.1145/1810479.1810489">https://doi.org/10.1145/1810479.1810489</a>'
  chicago: 'Alistarh, Dan-Adrian, Seth Gilbert, Rachid Guerraoui, Žarko Milošević,
    and Calvin Newport. “Securing Every Bit: Authenticated Broadcast in Radio Networks,”
    50–59. ACM, 2010. <a href="https://doi.org/10.1145/1810479.1810489">https://doi.org/10.1145/1810479.1810489</a>.'
  ieee: 'D.-A. Alistarh, S. Gilbert, R. Guerraoui, Ž. Milošević, and C. Newport, “Securing
    every bit: Authenticated broadcast in radio networks,” presented at the SPAA:
    Symposium on Parallelism in Algorithms and Architectures, 2010, pp. 50–59.'
  ista: 'Alistarh D-A, Gilbert S, Guerraoui R, Milošević Ž, Newport C. 2010. Securing
    every bit: Authenticated broadcast in radio networks. SPAA: Symposium on Parallelism
    in Algorithms and Architectures, 50–59.'
  mla: 'Alistarh, Dan-Adrian, et al. <i>Securing Every Bit: Authenticated Broadcast
    in Radio Networks</i>. ACM, 2010, pp. 50–59, doi:<a href="https://doi.org/10.1145/1810479.1810489">10.1145/1810479.1810489</a>.'
  short: D.-A. Alistarh, S. Gilbert, R. Guerraoui, Ž. Milošević, C. Newport, in:,
    ACM, 2010, pp. 50–59.
conference:
  name: 'SPAA: Symposium on Parallelism in Algorithms and Architectures'
date_created: 2018-12-11T11:48:20Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2023-02-23T13:10:56Z
day: '01'
doi: 10.1145/1810479.1810489
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 50 - 59
publication_status: published
publisher: ACM
publist_id: '6902'
status: public
title: 'Securing every bit: Authenticated broadcast in radio networks'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
_id: '758'
abstract:
- lang: eng
  text: Set agreement [4] is a fundamental problem in distributed computing, in which
    processes collectively choose a small subset of values from a larger set of proposals.
    Set agreement has been extensively studied in both synchronous and asynchronous
    systems [10,11,3,5,8,9]. Real world distributed systems, however, are neither
    purely synchronous nor purely asynchronous. To describe such a system, Dwork et
    al. [6] introduced the idea of partial synchrony. They assume for every execution
    some (unknown) time GST (global stabilization time), after which the system is
    synchronous. In a recent paper [1,2], we study the complexity of set agreement
    in the context of partially synchronous systems, determining the minimum-sized
    window of synchrony in which set agreement can be solved. We show that at least
    ⌊t/k⌋ + 2 synchronous rounds are required for k-set agreement, where t &lt; n
    is the number of crashes, and k is the agreement parameter of the set agreement
    task. We then introduce an algorithm that terminates in any window of synchrony
    of size at least ⌊t/k⌋ + 4 rounds. Together, these results tightly bound the inherent
    price of tolerating some asynchrony.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Seth
  full_name: Gilbert, Seth
  last_name: Gilbert
- first_name: Rachid
  full_name: Guerraoui, Rachid
  last_name: Guerraoui
- first_name: Corentin
  full_name: Travers, Corentin
  last_name: Travers
citation:
  ama: 'Alistarh D-A, Gilbert S, Guerraoui R, Travers C. Brief announcement: New bounds
    for partially synchronous set agreement. In: Vol 6343 LNCS. Springer; 2010:404-405.
    doi:<a href="https://doi.org/10.1007/978-3-642-15763-9_40">10.1007/978-3-642-15763-9_40</a>'
  apa: 'Alistarh, D.-A., Gilbert, S., Guerraoui, R., &#38; Travers, C. (2010). Brief
    announcement: New bounds for partially synchronous set agreement (Vol. 6343 LNCS,
    pp. 404–405). Presented at the DISC: Distributed Computing, Springer. <a href="https://doi.org/10.1007/978-3-642-15763-9_40">https://doi.org/10.1007/978-3-642-15763-9_40</a>'
  chicago: 'Alistarh, Dan-Adrian, Seth Gilbert, Rachid Guerraoui, and Corentin Travers.
    “Brief Announcement: New Bounds for Partially Synchronous Set Agreement,” 6343
    LNCS:404–5. Springer, 2010. <a href="https://doi.org/10.1007/978-3-642-15763-9_40">https://doi.org/10.1007/978-3-642-15763-9_40</a>.'
  ieee: 'D.-A. Alistarh, S. Gilbert, R. Guerraoui, and C. Travers, “Brief announcement:
    New bounds for partially synchronous set agreement,” presented at the DISC: Distributed
    Computing, 2010, vol. 6343 LNCS, pp. 404–405.'
  ista: 'Alistarh D-A, Gilbert S, Guerraoui R, Travers C. 2010. Brief announcement:
    New bounds for partially synchronous set agreement. DISC: Distributed Computing,
    LNCS, vol. 6343 LNCS, 404–405.'
  mla: 'Alistarh, Dan-Adrian, et al. <i>Brief Announcement: New Bounds for Partially
    Synchronous Set Agreement</i>. Vol. 6343 LNCS, Springer, 2010, pp. 404–05, doi:<a
    href="https://doi.org/10.1007/978-3-642-15763-9_40">10.1007/978-3-642-15763-9_40</a>.'
  short: D.-A. Alistarh, S. Gilbert, R. Guerraoui, C. Travers, in:, Springer, 2010,
    pp. 404–405.
conference:
  name: 'DISC: Distributed Computing'
date_created: 2018-12-11T11:48:21Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2023-02-23T13:11:26Z
day: '01'
doi: 10.1007/978-3-642-15763-9_40
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 404 - 405
publication_status: published
publisher: Springer
publist_id: '6899'
status: public
title: 'Brief announcement: New bounds for partially synchronous set agreement'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6343 LNCS
year: '2010'
...
---
_id: '7703'
abstract:
- lang: eng
  text: By combining gene expression profiling with image registration, Tomer et al.
    (2010) find that the mushroom body of the segmented worm Platynereis dumerilii
    shares many features with the mammalian cerebral cortex. The authors propose that
    the mushroom body and cortex evolved from the same structure in the common ancestor
    of vertebrates and invertebrates.
article_processing_charge: No
article_type: original
author:
- first_name: Lora Beatrice Jaeger
  full_name: Sweeney, Lora Beatrice Jaeger
  id: 56BE8254-C4F0-11E9-8E45-0B23E6697425
  last_name: Sweeney
  orcid: 0000-0001-9242-5601
- first_name: Liqun
  full_name: Luo, Liqun
  last_name: Luo
citation:
  ama: 'Sweeney LB, Luo L. ‘Fore brain: A hint of the ancestral cortex. <i>Cell</i>.
    2010;142(5):679-681. doi:<a href="https://doi.org/10.1016/j.cell.2010.08.024">10.1016/j.cell.2010.08.024</a>'
  apa: 'Sweeney, L. B., &#38; Luo, L. (2010). ‘Fore brain: A hint of the ancestral
    cortex. <i>Cell</i>. Elsevier. <a href="https://doi.org/10.1016/j.cell.2010.08.024">https://doi.org/10.1016/j.cell.2010.08.024</a>'
  chicago: 'Sweeney, Lora B., and Liqun Luo. “‘Fore Brain: A Hint of the Ancestral
    Cortex.” <i>Cell</i>. Elsevier, 2010. <a href="https://doi.org/10.1016/j.cell.2010.08.024">https://doi.org/10.1016/j.cell.2010.08.024</a>.'
  ieee: 'L. B. Sweeney and L. Luo, “‘Fore brain: A hint of the ancestral cortex,”
    <i>Cell</i>, vol. 142, no. 5. Elsevier, pp. 679–681, 2010.'
  ista: 'Sweeney LB, Luo L. 2010. ‘Fore brain: A hint of the ancestral cortex. Cell.
    142(5), 679–681.'
  mla: 'Sweeney, Lora B., and Liqun Luo. “‘Fore Brain: A Hint of the Ancestral Cortex.”
    <i>Cell</i>, vol. 142, no. 5, Elsevier, 2010, pp. 679–81, doi:<a href="https://doi.org/10.1016/j.cell.2010.08.024">10.1016/j.cell.2010.08.024</a>.'
  short: L.B. Sweeney, L. Luo, Cell 142 (2010) 679–681.
date_created: 2020-04-30T10:36:52Z
date_published: 2010-09-03T00:00:00Z
date_updated: 2024-01-31T10:14:59Z
day: '03'
doi: 10.1016/j.cell.2010.08.024
extern: '1'
intvolume: '       142'
issue: '5'
language:
- iso: eng
month: '09'
oa_version: None
page: 679-681
publication: Cell
publication_identifier:
  issn:
  - 0092-8674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: '‘Fore brain: A hint of the ancestral cortex'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 142
year: '2010'
...
---
_id: '14983'
abstract:
- lang: eng
  text: 'This chapter tackles a difficult challenge: presenting signal processing
    material to non-experts. This chapter is meant to be comprehensible to people
    who have some math background, including a course in linear algebra and basic
    statistics, but do not specialize in mathematics, engineering, or related fields.
    Some formulas assume the reader is familiar with matrices and basic matrix operations,
    but not more advanced material. Furthermore, we tried to make the chapter readable
    even if you skip the formulas. Nevertheless, we include some simple methods to
    demonstrate the basics of adaptive data processing, then we proceed with some
    advanced methods that are fundamental in adaptive signal processing, and are likely
    to be useful in a variety of applications. The advanced algorithms are also online
    available [30]. In the second part, these techniques are applied to some real-world
    BCI data.'
acknowledgement: This work was supported by the EU grants “BrainCom” (FP6-2004-Mobility-5
  Grant No 024259) and “Multi-adaptive BCI” (MEIF-CT-2006 Grant No 040666). Furthermore,
  we thank Matthias Krauledat for fruitful discussions and tools for generating Fig.
  5.
alternative_title:
- The Frontiers Collection
article_processing_charge: No
author:
- first_name: Alois
  full_name: Schlögl, Alois
  id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
  last_name: Schlögl
  orcid: 0000-0002-5621-8100
- first_name: Carmen
  full_name: Vidaurre, Carmen
  last_name: Vidaurre
- first_name: Klaus-Robert
  full_name: Müller, Klaus-Robert
  last_name: Müller
citation:
  ama: 'Schlögl A, Vidaurre C, Müller K-R. Adaptive Methods in BCI Research - An Introductory
    Tutorial. In: Graimann B, Pfurtscheller G, Allison B, eds. <i>Brain-Computer Interfaces</i>.
    1st ed. FRONTCOLL. Berlin, Heidelberg: Springer; 2010:331-355. doi:<a href="https://doi.org/10.1007/978-3-642-02091-9_18">10.1007/978-3-642-02091-9_18</a>'
  apa: 'Schlögl, A., Vidaurre, C., &#38; Müller, K.-R. (2010). Adaptive Methods in
    BCI Research - An Introductory Tutorial. In B. Graimann, G. Pfurtscheller, &#38;
    B. Allison (Eds.), <i>Brain-Computer Interfaces</i> (1st ed., pp. 331–355). Berlin,
    Heidelberg: Springer. <a href="https://doi.org/10.1007/978-3-642-02091-9_18">https://doi.org/10.1007/978-3-642-02091-9_18</a>'
  chicago: 'Schlögl, Alois, Carmen Vidaurre, and Klaus-Robert Müller. “Adaptive Methods
    in BCI Research - An Introductory Tutorial.” In <i>Brain-Computer Interfaces</i>,
    edited by Bernhard Graimann, Gert Pfurtscheller, and Brendan Allison, 1st ed.,
    331–55. FRONTCOLL. Berlin, Heidelberg: Springer, 2010. <a href="https://doi.org/10.1007/978-3-642-02091-9_18">https://doi.org/10.1007/978-3-642-02091-9_18</a>.'
  ieee: 'A. Schlögl, C. Vidaurre, and K.-R. Müller, “Adaptive Methods in BCI Research
    - An Introductory Tutorial,” in <i>Brain-Computer Interfaces</i>, 1st ed., B.
    Graimann, G. Pfurtscheller, and B. Allison, Eds. Berlin, Heidelberg: Springer,
    2010, pp. 331–355.'
  ista: 'Schlögl A, Vidaurre C, Müller K-R. 2010.Adaptive Methods in BCI Research
    - An Introductory Tutorial. In: Brain-Computer Interfaces. The Frontiers Collection,
    , 331–355.'
  mla: Schlögl, Alois, et al. “Adaptive Methods in BCI Research - An Introductory
    Tutorial.” <i>Brain-Computer Interfaces</i>, edited by Bernhard Graimann et al.,
    1st ed., Springer, 2010, pp. 331–55, doi:<a href="https://doi.org/10.1007/978-3-642-02091-9_18">10.1007/978-3-642-02091-9_18</a>.
  short: A. Schlögl, C. Vidaurre, K.-R. Müller, in:, B. Graimann, G. Pfurtscheller,
    B. Allison (Eds.), Brain-Computer Interfaces, 1st ed., Springer, Berlin, Heidelberg,
    2010, pp. 331–355.
date_created: 2024-02-14T09:56:00Z
date_published: 2010-09-06T00:00:00Z
date_updated: 2024-02-19T09:47:25Z
day: '06'
department:
- _id: ScienComp
doi: 10.1007/978-3-642-02091-9_18
edition: '1'
editor:
- first_name: Bernhard
  full_name: Graimann, Bernhard
  last_name: Graimann
- first_name: Gert
  full_name: Pfurtscheller, Gert
  last_name: Pfurtscheller
- first_name: Brendan
  full_name: Allison, Brendan
  last_name: Allison
language:
- iso: eng
month: '09'
oa_version: None
page: 331-355
place: Berlin, Heidelberg
publication: Brain-Computer Interfaces
publication_identifier:
  eisbn:
  - '9783642020919'
  isbn:
  - '9783642020902'
  issn:
  - 1612-3018
publication_status: published
publisher: Springer
quality_controlled: '1'
series_title: FRONTCOLL
status: public
title: Adaptive Methods in BCI Research - An Introductory Tutorial
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
_id: '1721'
acknowledgement: AK is funded by a Marie Curie fellowship. JB is funded by the MRC
  (UK). The funders had no role in study design, data collection and analysis, decision
  to publish, or preparation of the manuscript
author:
- first_name: Anna
  full_name: Anna Kicheva
  id: 3959A2A0-F248-11E8-B48F-1D18A9856A87
  last_name: Kicheva
  orcid: 0000-0003-4509-4998
- first_name: James
  full_name: Briscoe, James
  last_name: Briscoe
citation:
  ama: Kicheva A, Briscoe J. Limbs made to measure. <i>PLoS Biology</i>. 2010;8(7).
    doi:<a href="https://doi.org/10.1371/journal.pbio.1000421">10.1371/journal.pbio.1000421</a>
  apa: Kicheva, A., &#38; Briscoe, J. (2010). Limbs made to measure. <i>PLoS Biology</i>.
    Public Library of Science. <a href="https://doi.org/10.1371/journal.pbio.1000421">https://doi.org/10.1371/journal.pbio.1000421</a>
  chicago: Kicheva, Anna, and James Briscoe. “Limbs Made to Measure.” <i>PLoS Biology</i>.
    Public Library of Science, 2010. <a href="https://doi.org/10.1371/journal.pbio.1000421">https://doi.org/10.1371/journal.pbio.1000421</a>.
  ieee: A. Kicheva and J. Briscoe, “Limbs made to measure,” <i>PLoS Biology</i>, vol.
    8, no. 7. Public Library of Science, 2010.
  ista: Kicheva A, Briscoe J. 2010. Limbs made to measure. PLoS Biology. 8(7).
  mla: Kicheva, Anna, and James Briscoe. “Limbs Made to Measure.” <i>PLoS Biology</i>,
    vol. 8, no. 7, Public Library of Science, 2010, doi:<a href="https://doi.org/10.1371/journal.pbio.1000421">10.1371/journal.pbio.1000421</a>.
  short: A. Kicheva, J. Briscoe, PLoS Biology 8 (2010).
date_created: 2018-12-11T11:53:39Z
date_published: 2010-07-01T00:00:00Z
date_updated: 2021-01-12T06:52:45Z
day: '01'
doi: 10.1371/journal.pbio.1000421
extern: 1
intvolume: '         8'
issue: '7'
month: '07'
publication: PLoS Biology
publication_status: published
publisher: Public Library of Science
publist_id: '5407'
quality_controlled: 0
status: public
title: Limbs made to measure
type: journal_article
volume: 8
year: '2010'
...
---
_id: '1722'
abstract:
- lang: eng
  text: Morphogens are secreted signalling molecules that act in a graded manner to
    control the pattern of cellular differentiation in developing tissues. An example
    is Sonic hedgehog (Shh), which acts in several developing vertebrate tissues,
    including the central nervous system, to provide positional information during
    embryonic patterning. Here we address how Shh signalling assigns the positional
    identities of distinct neuronal subtype progenitors throughout the ventral neural
    tube. Assays of intracellular signal transduction and gene expression indicate
    that the duration as well as level of signalling is critical for morphogen interpretation.
    Progenitors of the ventral neuronal subtypes are established sequentially, with
    progressively more ventral identities requiring correspondingly higher levels
    and longer periods of Shh signalling. Moreover, cells remain sensitive to changes
    in Shh signalling for an extended time, reverting to antecedent identities if
    signalling levels fall below a threshold. Thus, the duration of signalling is
    important not only for the assignment but also for the refinement and maintenance
    of positional identity. Together the data suggest a dynamic model for ventral
    neural tube patterning in which positional information corresponds to the time
    integral of Shh signalling. This suggests an alternative to conventional models
    of morphogen action that rely solely on the level of signalling.
acknowledgement: 'NS was supported by a Marie Curie Fellowship (PIIF-GA-2008-219939)
  and the Mochida Memorial Foundation for Medical and Pharmaceutical Research. Support
  for VR was provided by an EMBO LTF, for AK by a FEBS LTF. ED was supported by the
  Wellcome Trust (#080630). Work in the lab of JB is supported by the Medical Research
  Council (UK). AP is a CNRS (Centre National de la Recherche Scientifique) Investigator.
  This work was supported by grants from the Ministère de la Recherche (ACI Grant
  #0220575) and the Association pour la Recherche sur le Cancer (Grant #4679) to AP.
  BGN was supported by grants from the Whitehall Foundation (2004-05-90-APL), the
  March of Dimes Foundation (5-FY2006-281), the Muscular Dystrophy Association (92901),
  and the NINDS (NS053976)'
author:
- first_name: Éric
  full_name: Dessaud, Éric
  last_name: Dessaud
- first_name: Vanessa
  full_name: Ribes, Vanessa
  last_name: Ribes
- first_name: Nikolaos
  full_name: Balaskas, Nikolaos
  last_name: Balaskas
- first_name: Linlin
  full_name: Yang, Linlin
  last_name: Yang
- first_name: Alessandra
  full_name: Pierani, Alessandra
  last_name: Pierani
- first_name: Anna
  full_name: Anna Kicheva
  id: 3959A2A0-F248-11E8-B48F-1D18A9856A87
  last_name: Kicheva
  orcid: 0000-0003-4509-4998
- first_name: Bennett
  full_name: Novitch, Bennett
  last_name: Novitch
- first_name: James
  full_name: Briscoe, James
  last_name: Briscoe
- first_name: Noriaki
  full_name: Sasai, Noriaki
  last_name: Sasai
citation:
  ama: Dessaud É, Ribes V, Balaskas N, et al. Dynamic assignment and maintenance of
    positional identity in the ventral neural tube by the morphogen sonic hedgehog.
    <i>PLoS Biology</i>. 2010;8(6). doi:<a href="https://doi.org/10.1371/journal.pbio.1000382">10.1371/journal.pbio.1000382</a>
  apa: Dessaud, É., Ribes, V., Balaskas, N., Yang, L., Pierani, A., Kicheva, A., …
    Sasai, N. (2010). Dynamic assignment and maintenance of positional identity in
    the ventral neural tube by the morphogen sonic hedgehog. <i>PLoS Biology</i>.
    Public Library of Science. <a href="https://doi.org/10.1371/journal.pbio.1000382">https://doi.org/10.1371/journal.pbio.1000382</a>
  chicago: Dessaud, Éric, Vanessa Ribes, Nikolaos Balaskas, Linlin Yang, Alessandra
    Pierani, Anna Kicheva, Bennett Novitch, James Briscoe, and Noriaki Sasai. “Dynamic
    Assignment and Maintenance of Positional Identity in the Ventral Neural Tube by
    the Morphogen Sonic Hedgehog.” <i>PLoS Biology</i>. Public Library of Science,
    2010. <a href="https://doi.org/10.1371/journal.pbio.1000382">https://doi.org/10.1371/journal.pbio.1000382</a>.
  ieee: É. Dessaud <i>et al.</i>, “Dynamic assignment and maintenance of positional
    identity in the ventral neural tube by the morphogen sonic hedgehog,” <i>PLoS
    Biology</i>, vol. 8, no. 6. Public Library of Science, 2010.
  ista: Dessaud É, Ribes V, Balaskas N, Yang L, Pierani A, Kicheva A, Novitch B, Briscoe
    J, Sasai N. 2010. Dynamic assignment and maintenance of positional identity in
    the ventral neural tube by the morphogen sonic hedgehog. PLoS Biology. 8(6).
  mla: Dessaud, Éric, et al. “Dynamic Assignment and Maintenance of Positional Identity
    in the Ventral Neural Tube by the Morphogen Sonic Hedgehog.” <i>PLoS Biology</i>,
    vol. 8, no. 6, Public Library of Science, 2010, doi:<a href="https://doi.org/10.1371/journal.pbio.1000382">10.1371/journal.pbio.1000382</a>.
  short: É. Dessaud, V. Ribes, N. Balaskas, L. Yang, A. Pierani, A. Kicheva, B. Novitch,
    J. Briscoe, N. Sasai, PLoS Biology 8 (2010).
date_created: 2018-12-11T11:53:39Z
date_published: 2010-06-01T00:00:00Z
date_updated: 2021-01-12T06:52:46Z
day: '01'
doi: 10.1371/journal.pbio.1000382
extern: 1
intvolume: '         8'
issue: '6'
month: '06'
publication: PLoS Biology
publication_status: published
publisher: Public Library of Science
publist_id: '5408'
quality_controlled: 0
status: public
title: Dynamic assignment and maintenance of positional identity in the ventral neural
  tube by the morphogen sonic hedgehog
type: journal_article
volume: 8
year: '2010'
...
---
_id: '1752'
abstract:
- lang: eng
  text: The epitaxial growth of germanium on silicon leads to the self-assembly of
    SiGe nanocrystals by a process that allows the size, composition and position
    of the nanocrystals to be controlled. This level of control, combined with an
    inherent compatibility with silicon technology, could prove useful in nanoelectronic
    applications. Here, we report the confinement of holes in quantum-dot devices
    made by directly contacting individual SiGe nanocrystals with aluminium electrodes,
    and the production of hybrid superconductor- semiconductor devices, such as resonant
    supercurrent transistors, when the quantum dot is strongly coupled to the electrodes.
    Charge transport measurements on weakly coupled quantum dots reveal discrete energy
    spectra, with the confined hole states displaying anisotropic gyromagnetic factors
    and strong spin-orbit coupling with pronounced dependences on gate voltage and
    magnetic field.
acknowledgement: We also acknowledge support from the Agence Nationale de la Recherche
  (through the ACCESS and COHESION projects). G.K. acknowledges further support from
  the Deutsche Forschungsgemeinschaft (grant no. KA 2922/1-1)
author:
- first_name: Georgios
  full_name: Georgios Katsaros
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
- first_name: Panayotis
  full_name: Spathis, Panayotis N
  last_name: Spathis
- first_name: Mathieu
  full_name: Stoffel, Mathieu
  last_name: Stoffel
- first_name: Frank
  full_name: Fournel, Frank
  last_name: Fournel
- first_name: Massimo
  full_name: Mongillo, Massimo
  last_name: Mongillo
- first_name: Vincent
  full_name: Bouchiat, Vincent
  last_name: Bouchiat
- first_name: François
  full_name: Lefloch, François
  last_name: Lefloch
- first_name: Armando
  full_name: Rastelli, Armando
  last_name: Rastelli
- first_name: Oliver
  full_name: Schmidt, Oliver G
  last_name: Schmidt
- first_name: Silvano
  full_name: De Franceschi, Silvano
  last_name: De Franceschi
citation:
  ama: Katsaros G, Spathis P, Stoffel M, et al. Hybrid superconductor-semiconductor
    devices made from self-assembled SiGe nanocrystals on silicon. <i>Nature Nanotechnology</i>.
    2010;5(6):458-464. doi:<a href="https://doi.org/10.1038/nnano.2010.84">10.1038/nnano.2010.84</a>
  apa: Katsaros, G., Spathis, P., Stoffel, M., Fournel, F., Mongillo, M., Bouchiat,
    V., … De Franceschi, S. (2010). Hybrid superconductor-semiconductor devices made
    from self-assembled SiGe nanocrystals on silicon. <i>Nature Nanotechnology</i>.
    Nature Publishing Group. <a href="https://doi.org/10.1038/nnano.2010.84">https://doi.org/10.1038/nnano.2010.84</a>
  chicago: Katsaros, Georgios, Panayotis Spathis, Mathieu Stoffel, Frank Fournel,
    Massimo Mongillo, Vincent Bouchiat, François Lefloch, Armando Rastelli, Oliver
    Schmidt, and Silvano De Franceschi. “Hybrid Superconductor-Semiconductor Devices
    Made from Self-Assembled SiGe Nanocrystals on Silicon.” <i>Nature Nanotechnology</i>.
    Nature Publishing Group, 2010. <a href="https://doi.org/10.1038/nnano.2010.84">https://doi.org/10.1038/nnano.2010.84</a>.
  ieee: G. Katsaros <i>et al.</i>, “Hybrid superconductor-semiconductor devices made
    from self-assembled SiGe nanocrystals on silicon,” <i>Nature Nanotechnology</i>,
    vol. 5, no. 6. Nature Publishing Group, pp. 458–464, 2010.
  ista: Katsaros G, Spathis P, Stoffel M, Fournel F, Mongillo M, Bouchiat V, Lefloch
    F, Rastelli A, Schmidt O, De Franceschi S. 2010. Hybrid superconductor-semiconductor
    devices made from self-assembled SiGe nanocrystals on silicon. Nature Nanotechnology.
    5(6), 458–464.
  mla: Katsaros, Georgios, et al. “Hybrid Superconductor-Semiconductor Devices Made
    from Self-Assembled SiGe Nanocrystals on Silicon.” <i>Nature Nanotechnology</i>,
    vol. 5, no. 6, Nature Publishing Group, 2010, pp. 458–64, doi:<a href="https://doi.org/10.1038/nnano.2010.84">10.1038/nnano.2010.84</a>.
  short: G. Katsaros, P. Spathis, M. Stoffel, F. Fournel, M. Mongillo, V. Bouchiat,
    F. Lefloch, A. Rastelli, O. Schmidt, S. De Franceschi, Nature Nanotechnology 5
    (2010) 458–464.
date_created: 2018-12-11T11:53:49Z
date_published: 2010-06-01T00:00:00Z
date_updated: 2021-01-12T06:52:59Z
day: '01'
doi: 10.1038/nnano.2010.84
extern: 1
intvolume: '         5'
issue: '6'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1005.1816
month: '06'
oa: 1
page: 458 - 464
publication: Nature Nanotechnology
publication_status: published
publisher: Nature Publishing Group
publist_id: '5372'
quality_controlled: 0
status: public
title: Hybrid superconductor-semiconductor devices made from self-assembled SiGe nanocrystals
  on silicon
type: journal_article
volume: 5
year: '2010'
...
---
_id: '1753'
abstract:
- lang: eng
  text: We investigate electronic transport in n-i-n GaN nanowires with and without
    AlN double barriers. The nanowires are grown by catalyst-free, plasma-assisted
    molecular beam epitaxy enabling abrupt GaN/AlN interfaces as well as longitudinal
    n-type doping modulation. At low temperature, transport in n-i-n GaN nanowires
    is dominated by the Coulomb blockade effect. Carriers are confined in the undoped
    middle region, forming single or multiple islands with a characteristic length
    of ∼100 nm. The incorporation of two AlN tunnel barriers causes confinement to
    occur within the GaN dot in between. In the case of a 6 nm thick dot and 2 nm
    thick barriers, we observe characteristic signatures of Coulomb-blockaded transport
    in single quantum dots with discrete energy states. For thinner dots and barriers,
    Coulomb-blockade effects do not play a significant role while the onset of resonant
    tunneling via the confined quantum levels is accompanied by a negative differential
    resistance surviving up to ∼150 K.
acknowledgement: This research was partly funded by the Agence Nationale de la Recherche
  through the COHESION project. G.K. acknowledges further support from the Deutsche
  Forschungsgemeinschaft (Grant KA 2922/1-1)
author:
- first_name: Rudeeson
  full_name: Songmuang, Rudeeson
  last_name: Songmuang
- first_name: Georgios
  full_name: Georgios Katsaros
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
- first_name: Eva
  full_name: Monroy, Eva
  last_name: Monroy
- first_name: Panayotis
  full_name: Spathis, Panayotis N
  last_name: Spathis
- first_name: Catherine
  full_name: Bougerol, Catherine
  last_name: Bougerol
- first_name: Massimo
  full_name: Mongillo, Massimo
  last_name: Mongillo
- first_name: Silvano
  full_name: De Franceschi, Silvano
  last_name: De Franceschi
citation:
  ama: Songmuang R, Katsaros G, Monroy E, et al. Quantum transport in GaN/AlN double-barrier
    heterostructure nanowires. <i>Nano Letters</i>. 2010;10(9):3545-3550. doi:<a href="https://doi.org/10.1021/nl1017578">10.1021/nl1017578</a>
  apa: Songmuang, R., Katsaros, G., Monroy, E., Spathis, P., Bougerol, C., Mongillo,
    M., &#38; De Franceschi, S. (2010). Quantum transport in GaN/AlN double-barrier
    heterostructure nanowires. <i>Nano Letters</i>. American Chemical Society. <a
    href="https://doi.org/10.1021/nl1017578">https://doi.org/10.1021/nl1017578</a>
  chicago: Songmuang, Rudeeson, Georgios Katsaros, Eva Monroy, Panayotis Spathis,
    Catherine Bougerol, Massimo Mongillo, and Silvano De Franceschi. “Quantum Transport
    in GaN/AlN Double-Barrier Heterostructure Nanowires.” <i>Nano Letters</i>. American
    Chemical Society, 2010. <a href="https://doi.org/10.1021/nl1017578">https://doi.org/10.1021/nl1017578</a>.
  ieee: R. Songmuang <i>et al.</i>, “Quantum transport in GaN/AlN double-barrier heterostructure
    nanowires,” <i>Nano Letters</i>, vol. 10, no. 9. American Chemical Society, pp.
    3545–3550, 2010.
  ista: Songmuang R, Katsaros G, Monroy E, Spathis P, Bougerol C, Mongillo M, De Franceschi
    S. 2010. Quantum transport in GaN/AlN double-barrier heterostructure nanowires.
    Nano Letters. 10(9), 3545–3550.
  mla: Songmuang, Rudeeson, et al. “Quantum Transport in GaN/AlN Double-Barrier Heterostructure
    Nanowires.” <i>Nano Letters</i>, vol. 10, no. 9, American Chemical Society, 2010,
    pp. 3545–50, doi:<a href="https://doi.org/10.1021/nl1017578">10.1021/nl1017578</a>.
  short: R. Songmuang, G. Katsaros, E. Monroy, P. Spathis, C. Bougerol, M. Mongillo,
    S. De Franceschi, Nano Letters 10 (2010) 3545–3550.
date_created: 2018-12-11T11:53:49Z
date_published: 2010-09-08T00:00:00Z
date_updated: 2021-01-12T06:52:59Z
day: '08'
doi: 10.1021/nl1017578
extern: 1
intvolume: '        10'
issue: '9'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1005.3637
month: '09'
oa: 1
page: 3545 - 3550
publication: Nano Letters
publication_status: published
publisher: American Chemical Society
publist_id: '5371'
quality_controlled: 0
status: public
title: Quantum transport in GaN/AlN double-barrier heterostructure nanowires
type: journal_article
volume: 10
year: '2010'
...
---
_id: '1772'
abstract:
- lang: eng
  text: We present the realization of a cavity quantum electrodynamics setup in which
    photons of strongly different lifetimes are engineered in different harmonic modes
    of the same cavity. We achieve this in a superconducting transmission line resonator
    with superconducting qubits coupled to the different modes. One cavity mode is
    strongly coupled to a detection line for qubit state readout, while a second long
    lifetime mode is used for photon storage and coherent quantum operations. We demonstrate
    sideband-based measurement of photon coherence, generation of n photon Fock states
    and the scaling of the sideband Rabi frequency with √n using a scheme that may
    be extended to realize sideband-based two-qubit logic gates.
acknowledgement: This work was supported financially by the Swiss National Science
  Foundation, by the EC via the EuroSQIP project and by ETH Zurich
author:
- first_name: Peter
  full_name: Leek, Peter J
  last_name: Leek
- first_name: Matthias
  full_name: Baur, Matthias P
  last_name: Baur
- first_name: Johannes M
  full_name: Johannes Fink
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: R
  full_name: Bianchetti, R
  last_name: Bianchetti
- first_name: L.
  full_name: Steffen, L. Kraig
  last_name: Steffen
- first_name: Stefan
  full_name: Filipp, Stefan
  last_name: Filipp
- first_name: Andreas
  full_name: Wallraff, Andreas
  last_name: Wallraff
citation:
  ama: Leek P, Baur M, Fink JM, et al. Cavity quantum electrodynamics with separate
    photon storage and qubit readout modes. <i>Physical Review Letters</i>. 2010;104(10).
    doi:<a href="https://doi.org/10.1103/PhysRevLett.104.100504">10.1103/PhysRevLett.104.100504</a>
  apa: Leek, P., Baur, M., Fink, J. M., Bianchetti, R., Steffen, L., Filipp, S., &#38;
    Wallraff, A. (2010). Cavity quantum electrodynamics with separate photon storage
    and qubit readout modes. <i>Physical Review Letters</i>. American Physical Society.
    <a href="https://doi.org/10.1103/PhysRevLett.104.100504">https://doi.org/10.1103/PhysRevLett.104.100504</a>
  chicago: Leek, Peter, Matthias Baur, Johannes M Fink, R Bianchetti, L. Steffen,
    Stefan Filipp, and Andreas Wallraff. “Cavity Quantum Electrodynamics with Separate
    Photon Storage and Qubit Readout Modes.” <i>Physical Review Letters</i>. American
    Physical Society, 2010. <a href="https://doi.org/10.1103/PhysRevLett.104.100504">https://doi.org/10.1103/PhysRevLett.104.100504</a>.
  ieee: P. Leek <i>et al.</i>, “Cavity quantum electrodynamics with separate photon
    storage and qubit readout modes,” <i>Physical Review Letters</i>, vol. 104, no.
    10. American Physical Society, 2010.
  ista: Leek P, Baur M, Fink JM, Bianchetti R, Steffen L, Filipp S, Wallraff A. 2010.
    Cavity quantum electrodynamics with separate photon storage and qubit readout
    modes. Physical Review Letters. 104(10).
  mla: Leek, Peter, et al. “Cavity Quantum Electrodynamics with Separate Photon Storage
    and Qubit Readout Modes.” <i>Physical Review Letters</i>, vol. 104, no. 10, American
    Physical Society, 2010, doi:<a href="https://doi.org/10.1103/PhysRevLett.104.100504">10.1103/PhysRevLett.104.100504</a>.
  short: P. Leek, M. Baur, J.M. Fink, R. Bianchetti, L. Steffen, S. Filipp, A. Wallraff,
    Physical Review Letters 104 (2010).
date_created: 2018-12-11T11:53:55Z
date_published: 2010-03-10T00:00:00Z
date_updated: 2021-01-12T06:53:06Z
day: '10'
doi: 10.1103/PhysRevLett.104.100504
extern: 1
intvolume: '       104'
issue: '10'
month: '03'
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '5345'
quality_controlled: 0
status: public
title: Cavity quantum electrodynamics with separate photon storage and qubit readout
  modes
type: journal_article
volume: 104
year: '2010'
...
