---
_id: '3328'
abstract:
- lang: eng
  text: 'We report on a generic uni- and bivariate algebraic kernel that is publicly
    available with CGAL 3.7. It comprises complete, correct, though efficient state-of-the-art
    implementations on polynomials, roots of polynomial systems, and the support to
    analyze algebraic curves defined by bivariate polynomials. The kernel design is
    generic, that is, various number types and substeps can be exchanged. It is accompanied
    with a ready-to-use interface to enable arrangements induced by algebraic curves,
    that have already been used as basis for various geometric applications, as arrangements
    on Dupin cyclides or the triangulation of algebraic surfaces. We present two novel
    applications: arrangements of rotated algebraic curves and Boolean set operations
    on polygons bounded by segments of algebraic curves. We also provide experiments
    showing that our general implementation is competitive and even often clearly
    outperforms existing implementations that are explicitly tailored for specific
    types of non-linear curves that are available in CGAL.'
article_processing_charge: No
author:
- first_name: Eric
  full_name: Berberich, Eric
  last_name: Berberich
- first_name: Michael
  full_name: Hemmer, Michael
  last_name: Hemmer
- first_name: Michael
  full_name: Kerber, Michael
  id: 36E4574A-F248-11E8-B48F-1D18A9856A87
  last_name: Kerber
  orcid: 0000-0002-8030-9299
citation:
  ama: 'Berberich E, Hemmer M, Kerber M. A generic algebraic kernel for non linear
    geometric applications. In: ACM; 2011:179-186. doi:<a href="https://doi.org/10.1145/1998196.1998224">10.1145/1998196.1998224</a>'
  apa: 'Berberich, E., Hemmer, M., &#38; Kerber, M. (2011). A generic algebraic kernel
    for non linear geometric applications (pp. 179–186). Presented at the SCG: Symposium
    on Computational Geometry, Paris, France: ACM. <a href="https://doi.org/10.1145/1998196.1998224">https://doi.org/10.1145/1998196.1998224</a>'
  chicago: Berberich, Eric, Michael Hemmer, and Michael Kerber. “A Generic Algebraic
    Kernel for Non Linear Geometric Applications,” 179–86. ACM, 2011. <a href="https://doi.org/10.1145/1998196.1998224">https://doi.org/10.1145/1998196.1998224</a>.
  ieee: 'E. Berberich, M. Hemmer, and M. Kerber, “A generic algebraic kernel for non
    linear geometric applications,” presented at the SCG: Symposium on Computational
    Geometry, Paris, France, 2011, pp. 179–186.'
  ista: 'Berberich E, Hemmer M, Kerber M. 2011. A generic algebraic kernel for non
    linear geometric applications. SCG: Symposium on Computational Geometry, 179–186.'
  mla: Berberich, Eric, et al. <i>A Generic Algebraic Kernel for Non Linear Geometric
    Applications</i>. ACM, 2011, pp. 179–86, doi:<a href="https://doi.org/10.1145/1998196.1998224">10.1145/1998196.1998224</a>.
  short: E. Berberich, M. Hemmer, M. Kerber, in:, ACM, 2011, pp. 179–186.
conference:
  end_date: 2011-06-15
  location: Paris, France
  name: 'SCG: Symposium on Computational Geometry'
  start_date: 2011-06-13
date_created: 2018-12-11T12:02:42Z
date_published: 2011-06-13T00:00:00Z
date_updated: 2021-01-12T07:42:41Z
day: '13'
department:
- _id: HeEd
doi: 10.1145/1998196.1998224
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://hal.inria.fr/inria-00480031/file/RR-7274.pdf
month: '06'
oa: 1
oa_version: Published Version
page: 179 - 186
publication_status: published
publisher: ACM
publist_id: '3307'
quality_controlled: '1'
scopus_import: 1
status: public
title: A generic algebraic kernel for non linear geometric applications
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '3329'
abstract:
- lang: eng
  text: 'We consider the offset-deconstruction problem: Given a polygonal shape Q
    with n vertices, can it be expressed, up to a tolerance µ in Hausdorff distance,
    as the Minkowski sum of another polygonal shape P with a disk of fixed radius?
    If it does, we also seek a preferably simple-looking solution shape P; then, P''s
    offset constitutes an accurate, vertex-reduced, and smoothened approximation of
    Q. We give an O(n log n)-time exact decision algorithm that handles any polygonal
    shape, assuming the real-RAM model of computation. An alternative algorithm, based
    purely on rational arithmetic, answers the same deconstruction problem, up to
    an uncertainty parameter, and its running time depends on the parameter δ (in
    addition to the other input parameters: n, δ and the radius of the disk). If the
    input shape is found to be approximable, the rational-arithmetic algorithm also
    computes an approximate solution shape for the problem. For convex shapes, the
    complexity of the exact decision algorithm drops to O(n), which is also the time
    required to compute a solution shape P with at most one more vertex than a vertex-minimal
    one. Our study is motivated by applications from two different domains. However,
    since the offset operation has numerous uses, we anticipate that the reverse question
    that we study here will be still more broadly applicable. We present results obtained
    with our implementation of the rational-arithmetic algorithm.'
author:
- first_name: Eric
  full_name: Berberich, Eric
  last_name: Berberich
- first_name: Dan
  full_name: Halperin, Dan
  last_name: Halperin
- first_name: Michael
  full_name: Kerber, Michael
  id: 36E4574A-F248-11E8-B48F-1D18A9856A87
  last_name: Kerber
  orcid: 0000-0002-8030-9299
- first_name: Roza
  full_name: Pogalnikova, Roza
  last_name: Pogalnikova
citation:
  ama: 'Berberich E, Halperin D, Kerber M, Pogalnikova R. Deconstructing approximate
    offsets. In: <i>Proceedings of the Twenty-Seventh Annual Symposium on Computational
    Geometry</i>. ACM; 2011:187-196. doi:<a href="https://doi.org/10.1145/1998196.1998225">10.1145/1998196.1998225</a>'
  apa: 'Berberich, E., Halperin, D., Kerber, M., &#38; Pogalnikova, R. (2011). Deconstructing
    approximate offsets. In <i>Proceedings of the twenty-seventh annual symposium
    on Computational geometry</i> (pp. 187–196). Paris, France: ACM. <a href="https://doi.org/10.1145/1998196.1998225">https://doi.org/10.1145/1998196.1998225</a>'
  chicago: Berberich, Eric, Dan Halperin, Michael Kerber, and Roza Pogalnikova. “Deconstructing
    Approximate Offsets.” In <i>Proceedings of the Twenty-Seventh Annual Symposium
    on Computational Geometry</i>, 187–96. ACM, 2011. <a href="https://doi.org/10.1145/1998196.1998225">https://doi.org/10.1145/1998196.1998225</a>.
  ieee: E. Berberich, D. Halperin, M. Kerber, and R. Pogalnikova, “Deconstructing
    approximate offsets,” in <i>Proceedings of the twenty-seventh annual symposium
    on Computational geometry</i>, Paris, France, 2011, pp. 187–196.
  ista: 'Berberich E, Halperin D, Kerber M, Pogalnikova R. 2011. Deconstructing approximate
    offsets. Proceedings of the twenty-seventh annual symposium on Computational geometry.
    SCG: Symposium on Computational Geometry, 187–196.'
  mla: Berberich, Eric, et al. “Deconstructing Approximate Offsets.” <i>Proceedings
    of the Twenty-Seventh Annual Symposium on Computational Geometry</i>, ACM, 2011,
    pp. 187–96, doi:<a href="https://doi.org/10.1145/1998196.1998225">10.1145/1998196.1998225</a>.
  short: E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, Proceedings of
    the Twenty-Seventh Annual Symposium on Computational Geometry, ACM, 2011, pp.
    187–196.
conference:
  end_date: 2011-06-15
  location: Paris, France
  name: 'SCG: Symposium on Computational Geometry'
  start_date: 2011-06-13
date_created: 2018-12-11T12:02:42Z
date_published: 2011-06-13T00:00:00Z
date_updated: 2023-02-23T11:12:57Z
day: '13'
department:
- _id: HeEd
doi: 10.1145/1998196.1998225
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1109.2158
month: '06'
oa: 1
oa_version: Preprint
page: 187 - 196
publication: Proceedings of the twenty-seventh annual symposium on Computational geometry
publication_status: published
publisher: ACM
publist_id: '3306'
quality_controlled: '1'
related_material:
  record:
  - id: '3115'
    relation: later_version
    status: public
scopus_import: 1
status: public
title: Deconstructing approximate offsets
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '3330'
abstract:
- lang: eng
  text: We consider the problem of approximating all real roots of a square-free polynomial
    f. Given isolating intervals, our algorithm refines each of them to a width at
    most 2-L, that is, each of the roots is approximated to L bits after the binary
    point. Our method provides a certified answer for arbitrary real polynomials,
    only requiring finite approximations of the polynomial coefficient and choosing
    a suitable working precision adaptively. In this way, we get a correct algorithm
    that is simple to implement and practically efficient. Our algorithm uses the
    quadratic interval refinement method; we adapt that method to be able to cope
    with inaccuracies when evaluating f, without sacrificing its quadratic convergence
    behavior. We prove a bound on the bit complexity of our algorithm in terms of
    degree, coefficient size and discriminant. Our bound improves previous work on
    integer polynomials by a factor of deg f and essentially matches best known theoretical
    bounds on root approximation which are obtained by very sophisticated algorithms.
article_processing_charge: No
arxiv: 1
author:
- first_name: Michael
  full_name: Kerber, Michael
  id: 36E4574A-F248-11E8-B48F-1D18A9856A87
  last_name: Kerber
  orcid: 0000-0002-8030-9299
- first_name: Michael
  full_name: Sagraloff, Michael
  last_name: Sagraloff
citation:
  ama: 'Kerber M, Sagraloff M. Root refinement for real polynomials. In: Springer;
    2011:209-216. doi:<a href="https://doi.org/10.1145/1993886.1993920">10.1145/1993886.1993920</a>'
  apa: 'Kerber, M., &#38; Sagraloff, M. (2011). Root refinement for real polynomials
    (pp. 209–216). Presented at the ISSAC: International Symposium on Symbolic and
    Algebraic Computation, California, USA: Springer. <a href="https://doi.org/10.1145/1993886.1993920">https://doi.org/10.1145/1993886.1993920</a>'
  chicago: Kerber, Michael, and Michael Sagraloff. “Root Refinement for Real Polynomials,”
    209–16. Springer, 2011. <a href="https://doi.org/10.1145/1993886.1993920">https://doi.org/10.1145/1993886.1993920</a>.
  ieee: 'M. Kerber and M. Sagraloff, “Root refinement for real polynomials,” presented
    at the ISSAC: International Symposium on Symbolic and Algebraic Computation, California,
    USA, 2011, pp. 209–216.'
  ista: 'Kerber M, Sagraloff M. 2011. Root refinement for real polynomials. ISSAC:
    International Symposium on Symbolic and Algebraic Computation, 209–216.'
  mla: Kerber, Michael, and Michael Sagraloff. <i>Root Refinement for Real Polynomials</i>.
    Springer, 2011, pp. 209–16, doi:<a href="https://doi.org/10.1145/1993886.1993920">10.1145/1993886.1993920</a>.
  short: M. Kerber, M. Sagraloff, in:, Springer, 2011, pp. 209–216.
conference:
  end_date: 2011-06-11
  location: California, USA
  name: 'ISSAC: International Symposium on Symbolic and Algebraic Computation'
  start_date: 2011-06-08
date_created: 2018-12-11T12:02:43Z
date_published: 2011-06-08T00:00:00Z
date_updated: 2021-01-12T07:42:42Z
day: '08'
department:
- _id: HeEd
doi: 10.1145/1993886.1993920
external_id:
  arxiv:
  - '1104.1362'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1104.1362
month: '06'
oa: 1
oa_version: Preprint
page: 209 - 216
publication_status: published
publisher: Springer
publist_id: '3304'
quality_controlled: '1'
scopus_import: 1
status: public
title: Root refinement for real polynomials
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '3332'
abstract:
- lang: eng
  text: Given an algebraic hypersurface O in ℝd, how many simplices are necessary
    for a simplicial complex isotopic to O? We address this problem and the variant
    where all vertices of the complex must lie on O. We give asymptotically tight
    worst-case bounds for algebraic plane curves. Our results gradually improve known
    bounds in higher dimensions; however, the question for tight bounds remains unsolved
    for d ≥ 3.
article_processing_charge: No
article_type: original
author:
- first_name: Michael
  full_name: Kerber, Michael
  id: 36E4574A-F248-11E8-B48F-1D18A9856A87
  last_name: Kerber
  orcid: 0000-0002-8030-9299
- first_name: Michael
  full_name: Sagraloff, Michael
  last_name: Sagraloff
citation:
  ama: Kerber M, Sagraloff M. A note on the complexity of real algebraic hypersurfaces.
    <i>Graphs and Combinatorics</i>. 2011;27(3):419-430. doi:<a href="https://doi.org/10.1007/s00373-011-1020-7">10.1007/s00373-011-1020-7</a>
  apa: Kerber, M., &#38; Sagraloff, M. (2011). A note on the complexity of real algebraic
    hypersurfaces. <i>Graphs and Combinatorics</i>. Springer. <a href="https://doi.org/10.1007/s00373-011-1020-7">https://doi.org/10.1007/s00373-011-1020-7</a>
  chicago: Kerber, Michael, and Michael Sagraloff. “A Note on the Complexity of Real
    Algebraic Hypersurfaces.” <i>Graphs and Combinatorics</i>. Springer, 2011. <a
    href="https://doi.org/10.1007/s00373-011-1020-7">https://doi.org/10.1007/s00373-011-1020-7</a>.
  ieee: M. Kerber and M. Sagraloff, “A note on the complexity of real algebraic hypersurfaces,”
    <i>Graphs and Combinatorics</i>, vol. 27, no. 3. Springer, pp. 419–430, 2011.
  ista: Kerber M, Sagraloff M. 2011. A note on the complexity of real algebraic hypersurfaces.
    Graphs and Combinatorics. 27(3), 419–430.
  mla: Kerber, Michael, and Michael Sagraloff. “A Note on the Complexity of Real Algebraic
    Hypersurfaces.” <i>Graphs and Combinatorics</i>, vol. 27, no. 3, Springer, 2011,
    pp. 419–30, doi:<a href="https://doi.org/10.1007/s00373-011-1020-7">10.1007/s00373-011-1020-7</a>.
  short: M. Kerber, M. Sagraloff, Graphs and Combinatorics 27 (2011) 419–430.
date_created: 2018-12-11T12:02:43Z
date_published: 2011-03-17T00:00:00Z
date_updated: 2021-01-12T07:42:43Z
day: '17'
ddc:
- '500'
department:
- _id: HeEd
doi: 10.1007/s00373-011-1020-7
file:
- access_level: open_access
  checksum: a63a1e3e885dcc68f1e3dea68dfbe213
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-19T16:11:36Z
  date_updated: 2020-07-14T12:46:08Z
  file_id: '7869'
  file_name: 2011_GraphsCombi_Kerber.pdf
  file_size: 143976
  relation: main_file
file_date_updated: 2020-07-14T12:46:08Z
has_accepted_license: '1'
intvolume: '        27'
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Submitted Version
page: 419 - 430
publication: Graphs and Combinatorics
publication_status: published
publisher: Springer
publist_id: '3301'
quality_controlled: '1'
scopus_import: 1
status: public
title: A note on the complexity of real algebraic hypersurfaces
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 27
year: '2011'
...
---
_id: '3334'
article_type: letter_note
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: János
  full_name: Pach, János
  last_name: Pach
- first_name: Günter
  full_name: Ziegler, Günter
  last_name: Ziegler
citation:
  ama: Edelsbrunner H, Pach J, Ziegler G. Letter from the new editors-in-chief. <i>Discrete
    &#38; Computational Geometry</i>. 2011;45(1):1-2. doi:<a href="https://doi.org/10.1007/s00454-010-9313-9">10.1007/s00454-010-9313-9</a>
  apa: Edelsbrunner, H., Pach, J., &#38; Ziegler, G. (2011). Letter from the new editors-in-chief.
    <i>Discrete &#38; Computational Geometry</i>. Springer. <a href="https://doi.org/10.1007/s00454-010-9313-9">https://doi.org/10.1007/s00454-010-9313-9</a>
  chicago: Edelsbrunner, Herbert, János Pach, and Günter Ziegler. “Letter from the
    New Editors-in-Chief.” <i>Discrete &#38; Computational Geometry</i>. Springer,
    2011. <a href="https://doi.org/10.1007/s00454-010-9313-9">https://doi.org/10.1007/s00454-010-9313-9</a>.
  ieee: H. Edelsbrunner, J. Pach, and G. Ziegler, “Letter from the new editors-in-chief,”
    <i>Discrete &#38; Computational Geometry</i>, vol. 45, no. 1. Springer, pp. 1–2,
    2011.
  ista: Edelsbrunner H, Pach J, Ziegler G. 2011. Letter from the new editors-in-chief.
    Discrete &#38; Computational Geometry. 45(1), 1–2.
  mla: Edelsbrunner, Herbert, et al. “Letter from the New Editors-in-Chief.” <i>Discrete
    &#38; Computational Geometry</i>, vol. 45, no. 1, Springer, 2011, pp. 1–2, doi:<a
    href="https://doi.org/10.1007/s00454-010-9313-9">10.1007/s00454-010-9313-9</a>.
  short: H. Edelsbrunner, J. Pach, G. Ziegler, Discrete &#38; Computational Geometry
    45 (2011) 1–2.
date_created: 2018-12-11T12:02:44Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:42:44Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/s00454-010-9313-9
intvolume: '        45'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 1 - 2
publication: Discrete & Computational Geometry
publication_status: published
publisher: Springer
publist_id: '3297'
quality_controlled: '1'
scopus_import: 1
status: public
title: Letter from the new editors-in-chief
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 45
year: '2011'
...
---
_id: '3335'
abstract:
- lang: eng
  text: We study the topology of the Megaparsec Cosmic Web in terms of the scale-dependent
    Betti numbers, which formalize the topological information content of the cosmic
    mass distribution. While the Betti numbers do not fully quantify topology, they
    extend the information beyond conventional cosmological studies of topology in
    terms of genus and Euler characteristic. The richer information content of Betti
    numbers goes along the availability of fast algorithms to compute them. For continuous
    density fields, we determine the scale-dependence of Betti numbers by invoking
    the cosmologically familiar filtration of sublevel or superlevel sets defined
    by density thresholds. For the discrete galaxy distribution, however, the analysis
    is based on the alpha shapes of the particles. These simplicial complexes constitute
    an ordered sequence of nested subsets of the Delaunay tessellation, a filtration
    defined by the scale parameter, α. As they are homotopy equivalent to the sublevel
    sets of the distance field, they are an excellent tool for assessing the topological
    structure of a discrete point distribution. In order to develop an intuitive understanding
    for the behavior of Betti numbers as a function of α, and their relation to the
    morphological patterns in the Cosmic Web, we first study them within the context
    of simple heuristic Voronoi clustering models. These can be tuned to consist of
    specific morphological elements of the Cosmic Web, i.e. clusters, filaments, or
    sheets. To elucidate the relative prominence of the various Betti numbers in different
    stages of morphological evolution, we introduce the concept of alpha tracks. Subsequently,
    we address the topology of structures emerging in the standard LCDM scenario and
    in cosmological scenarios with alternative dark energy content. The evolution
    of the Betti numbers is shown to reflect the hierarchical evolution of the Cosmic
    Web. We also demonstrate that the scale-dependence of the Betti numbers yields
    a promising measure of cosmological parameters, with a potential to help in determining
    the nature of dark energy and to probe primordial non-Gaussianities. We also discuss
    the expected Betti numbers as a function of the density threshold for superlevel
    sets of a Gaussian random field. Finally, we introduce the concept of persistent
    homology. It measures scale levels of the mass distribution and allows us to separate
    small from large scale features. Within the context of the hierarchical cosmic
    structure formation, persistence provides a natural formalism for a multiscale
    topology study of the Cosmic Web.
alternative_title:
- LNCS
arxiv: 1
author:
- first_name: Rien
  full_name: Van De Weygaert, Rien
  last_name: Van De Weygaert
- first_name: Gert
  full_name: Vegter, Gert
  last_name: Vegter
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Bernard
  full_name: Jones, Bernard
  last_name: Jones
- first_name: Pratyush
  full_name: Pranav, Pratyush
  last_name: Pranav
- first_name: Changbom
  full_name: Park, Changbom
  last_name: Park
- first_name: Wojciech
  full_name: Hellwing, Wojciech
  last_name: Hellwing
- first_name: Bob
  full_name: Eldering, Bob
  last_name: Eldering
- first_name: Nico
  full_name: Kruithof, Nico
  last_name: Kruithof
- first_name: Patrick
  full_name: Bos, Patrick
  last_name: Bos
- first_name: Johan
  full_name: Hidding, Johan
  last_name: Hidding
- first_name: Job
  full_name: Feldbrugge, Job
  last_name: Feldbrugge
- first_name: Eline
  full_name: Ten Have, Eline
  last_name: Ten Have
- first_name: Matti
  full_name: Van Engelen, Matti
  last_name: Van Engelen
- first_name: Manuel
  full_name: Caroli, Manuel
  last_name: Caroli
- first_name: Monique
  full_name: Teillaud, Monique
  last_name: Teillaud
citation:
  ama: 'Van De Weygaert R, Vegter G, Edelsbrunner H, et al. Alpha, Betti and the Megaparsec
    Universe: On the topology of the Cosmic Web. In: Gavrilova M, Tan K, Mostafavi
    M, eds. <i>Transactions on Computational Science XIV</i>. Vol 6970. Special Issue
    on Voronoi Diagrams and Delaunay Triangulation. Springer; 2011:60-101. doi:<a
    href="https://doi.org/10.1007/978-3-642-25249-5_3">10.1007/978-3-642-25249-5_3</a>'
  apa: 'Van De Weygaert, R., Vegter, G., Edelsbrunner, H., Jones, B., Pranav, P.,
    Park, C., … Teillaud, M. (2011). Alpha, Betti and the Megaparsec Universe: On
    the topology of the Cosmic Web. In M. Gavrilova, K. Tan, &#38; M. Mostafavi (Eds.),
    <i>Transactions on Computational Science XIV</i> (Vol. 6970, pp. 60–101). Springer.
    <a href="https://doi.org/10.1007/978-3-642-25249-5_3">https://doi.org/10.1007/978-3-642-25249-5_3</a>'
  chicago: 'Van De Weygaert, Rien, Gert Vegter, Herbert Edelsbrunner, Bernard Jones,
    Pratyush Pranav, Changbom Park, Wojciech Hellwing, et al. “Alpha, Betti and the
    Megaparsec Universe: On the Topology of the Cosmic Web.” In <i>Transactions on
    Computational Science XIV</i>, edited by Marina Gavrilova, Kenneth Tan, and Mir
    Mostafavi, 6970:60–101. Special Issue on Voronoi Diagrams and Delaunay Triangulation.
    Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-25249-5_3">https://doi.org/10.1007/978-3-642-25249-5_3</a>.'
  ieee: 'R. Van De Weygaert <i>et al.</i>, “Alpha, Betti and the Megaparsec Universe:
    On the topology of the Cosmic Web,” in <i>Transactions on Computational Science
    XIV</i>, vol. 6970, M. Gavrilova, K. Tan, and M. Mostafavi, Eds. Springer, 2011,
    pp. 60–101.'
  ista: 'Van De Weygaert R, Vegter G, Edelsbrunner H, Jones B, Pranav P, Park C, Hellwing
    W, Eldering B, Kruithof N, Bos P, Hidding J, Feldbrugge J, Ten Have E, Van Engelen
    M, Caroli M, Teillaud M. 2011.Alpha, Betti and the Megaparsec Universe: On the
    topology of the Cosmic Web. In: Transactions on Computational Science XIV. LNCS,
    vol. 6970, 60–101.'
  mla: 'Van De Weygaert, Rien, et al. “Alpha, Betti and the Megaparsec Universe: On
    the Topology of the Cosmic Web.” <i>Transactions on Computational Science XIV</i>,
    edited by Marina Gavrilova et al., vol. 6970, Springer, 2011, pp. 60–101, doi:<a
    href="https://doi.org/10.1007/978-3-642-25249-5_3">10.1007/978-3-642-25249-5_3</a>.'
  short: R. Van De Weygaert, G. Vegter, H. Edelsbrunner, B. Jones, P. Pranav, C. Park,
    W. Hellwing, B. Eldering, N. Kruithof, P. Bos, J. Hidding, J. Feldbrugge, E. Ten
    Have, M. Van Engelen, M. Caroli, M. Teillaud, in:, M. Gavrilova, K. Tan, M. Mostafavi
    (Eds.), Transactions on Computational Science XIV, Springer, 2011, pp. 60–101.
date_created: 2018-12-11T12:02:44Z
date_published: 2011-11-09T00:00:00Z
date_updated: 2021-01-12T07:42:44Z
day: '09'
department:
- _id: HeEd
doi: 10.1007/978-3-642-25249-5_3
editor:
- first_name: Marina
  full_name: Gavrilova, Marina
  last_name: Gavrilova
- first_name: Kenneth
  full_name: Tan, Kenneth
  last_name: Tan
- first_name: Mir
  full_name: Mostafavi, Mir
  last_name: Mostafavi
external_id:
  arxiv:
  - '1306.3640'
intvolume: '      6970'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1306.3640
month: '11'
oa: 1
oa_version: Preprint
page: 60 - 101
publication: Transactions on Computational Science XIV
publication_status: published
publisher: Springer
publist_id: '3295'
quality_controlled: '1'
scopus_import: 1
series_title: Special Issue on Voronoi Diagrams and Delaunay Triangulation
status: public
title: 'Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web'
type: book_chapter
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 6970
year: '2011'
...
---
_id: '3336'
abstract:
- lang: eng
  text: 'We introduce TopoCut: a new way to integrate knowledge about topological
    properties (TPs) into random field image segmentation model. Instead of including
    TPs as additional constraints during minimization of the energy function, we devise
    an efficient algorithm for modifying the unary potentials such that the resulting
    segmentation is guaranteed with the desired properties. Our method is more flexible
    in the sense that it handles more topology constraints than previous methods,
    which were only able to enforce pairwise or global connectivity. In particular,
    our method is very fast, making it for the first time possible to enforce global
    topological properties in practical image segmentation tasks.'
acknowledgement: The first author is supported by the Austrian Science Fund (FWF)
  grant No. P20134-N13. The authors would like to thank Sebastian Nowozin for helpful
  discussions.
article_processing_charge: No
author:
- first_name: Chao
  full_name: Chen, Chao
  id: 3E92416E-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Daniel
  full_name: Freedman, Daniel
  last_name: Freedman
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Chen C, Freedman D, Lampert C. Enforcing topological constraints in random
    field image segmentation. In: <i>CVPR: Computer Vision and Pattern Recognition</i>.
    IEEE; 2011:2089-2096. doi:<a href="https://doi.org/10.1109/CVPR.2011.5995503">10.1109/CVPR.2011.5995503</a>'
  apa: 'Chen, C., Freedman, D., &#38; Lampert, C. (2011). Enforcing topological constraints
    in random field image segmentation. In <i>CVPR: Computer Vision and Pattern Recognition</i>
    (pp. 2089–2096). Colorado Springs, CO, United States: IEEE. <a href="https://doi.org/10.1109/CVPR.2011.5995503">https://doi.org/10.1109/CVPR.2011.5995503</a>'
  chicago: 'Chen, Chao, Daniel Freedman, and Christoph Lampert. “Enforcing Topological
    Constraints in Random Field Image Segmentation.” In <i>CVPR: Computer Vision and
    Pattern Recognition</i>, 2089–96. IEEE, 2011. <a href="https://doi.org/10.1109/CVPR.2011.5995503">https://doi.org/10.1109/CVPR.2011.5995503</a>.'
  ieee: 'C. Chen, D. Freedman, and C. Lampert, “Enforcing topological constraints
    in random field image segmentation,” in <i>CVPR: Computer Vision and Pattern Recognition</i>,
    Colorado Springs, CO, United States, 2011, pp. 2089–2096.'
  ista: 'Chen C, Freedman D, Lampert C. 2011. Enforcing topological constraints in
    random field image segmentation. CVPR: Computer Vision and Pattern Recognition.
    CVPR: Conference on Computer Vision and Pattern Recognition, 2089–2096.'
  mla: 'Chen, Chao, et al. “Enforcing Topological Constraints in Random Field Image
    Segmentation.” <i>CVPR: Computer Vision and Pattern Recognition</i>, IEEE, 2011,
    pp. 2089–96, doi:<a href="https://doi.org/10.1109/CVPR.2011.5995503">10.1109/CVPR.2011.5995503</a>.'
  short: 'C. Chen, D. Freedman, C. Lampert, in:, CVPR: Computer Vision and Pattern
    Recognition, IEEE, 2011, pp. 2089–2096.'
conference:
  end_date: 2011-06-25
  location: Colorado Springs, CO, United States
  name: 'CVPR: Conference on Computer Vision and Pattern Recognition'
  start_date: 2011-06-20
date_created: 2018-12-11T12:02:45Z
date_published: 2011-07-22T00:00:00Z
date_updated: 2023-02-23T12:23:56Z
day: '22'
department:
- _id: HeEd
- _id: ChLa
doi: 10.1109/CVPR.2011.5995503
language:
- iso: eng
month: '07'
oa_version: None
page: 2089 - 2096
publication: 'CVPR: Computer Vision and Pattern Recognition'
publication_identifier:
  eisbn:
  - 978-1-4577-0395-9
  isbn:
  - 978-1-4577-0394-2
publication_status: published
publisher: IEEE
publist_id: '3294'
quality_controlled: '1'
related_material:
  record:
  - id: '5386'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Enforcing topological constraints in random field image segmentation
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '3337'
abstract:
- lang: eng
  text: Playing table tennis is a difficult task for robots, especially due to their
    limitations of acceleration. A key bottleneck is the amount of time needed to
    reach the desired hitting position and velocity of the racket for returning the
    incoming ball. Here, it often does not suffice to simply extrapolate the ball's
    trajectory after the opponent returns it but more information is needed. Humans
    are able to predict the ball's trajectory based on the opponent's moves and, thus,
    have a considerable advantage. Hence, we propose to incorporate an anticipation
    system into robot table tennis players, which enables the robot to react earlier
    while the opponent is performing the striking movement. Based on visual observation
    of the opponent's racket movement, the robot can predict the aim of the opponent
    and adjust its movement generation accordingly. The policies for deciding how
    and when to react are obtained by reinforcement learning. We conduct experiments
    with an existing robot player to show that the learned reaction policy can significantly
    improve the performance of the overall system.
author:
- first_name: Zhikun
  full_name: Wang, Zhikun
  last_name: Wang
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
- first_name: Katharina
  full_name: Mülling, Katharina
  last_name: Mülling
- first_name: Bernhard
  full_name: Schölkopf, Bernhard
  last_name: Schölkopf
- first_name: Jan
  full_name: Peters, Jan
  last_name: Peters
citation:
  ama: 'Wang Z, Lampert C, Mülling K, Schölkopf B, Peters J. Learning anticipation
    policies for robot table tennis. In: IEEE; 2011:332-337. doi:<a href="https://doi.org/10.1109/IROS.2011.6094892">10.1109/IROS.2011.6094892</a>'
  apa: 'Wang, Z., Lampert, C., Mülling, K., Schölkopf, B., &#38; Peters, J. (2011).
    Learning anticipation policies for robot table tennis (pp. 332–337). Presented
    at the IROS: RSJ International Conference on Intelligent Robots and Systems, San
    Francisco, USA: IEEE. <a href="https://doi.org/10.1109/IROS.2011.6094892">https://doi.org/10.1109/IROS.2011.6094892</a>'
  chicago: Wang, Zhikun, Christoph Lampert, Katharina Mülling, Bernhard Schölkopf,
    and Jan Peters. “Learning Anticipation Policies for Robot Table Tennis,” 332–37.
    IEEE, 2011. <a href="https://doi.org/10.1109/IROS.2011.6094892">https://doi.org/10.1109/IROS.2011.6094892</a>.
  ieee: 'Z. Wang, C. Lampert, K. Mülling, B. Schölkopf, and J. Peters, “Learning anticipation
    policies for robot table tennis,” presented at the IROS: RSJ International Conference
    on Intelligent Robots and Systems, San Francisco, USA, 2011, pp. 332–337.'
  ista: 'Wang Z, Lampert C, Mülling K, Schölkopf B, Peters J. 2011. Learning anticipation
    policies for robot table tennis. IROS: RSJ International Conference on Intelligent
    Robots and Systems, 332–337.'
  mla: Wang, Zhikun, et al. <i>Learning Anticipation Policies for Robot Table Tennis</i>.
    IEEE, 2011, pp. 332–37, doi:<a href="https://doi.org/10.1109/IROS.2011.6094892">10.1109/IROS.2011.6094892</a>.
  short: Z. Wang, C. Lampert, K. Mülling, B. Schölkopf, J. Peters, in:, IEEE, 2011,
    pp. 332–337.
conference:
  end_date: 2011-09-30
  location: San Francisco, USA
  name: 'IROS: RSJ International Conference on Intelligent Robots and Systems'
  start_date: 2011-09-25
date_created: 2018-12-11T12:02:45Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:42:45Z
day: '01'
department:
- _id: ChLa
doi: 10.1109/IROS.2011.6094892
language:
- iso: eng
month: '01'
oa_version: None
page: 332 - 337
publication_status: published
publisher: IEEE
publist_id: '3293'
quality_controlled: '1'
scopus_import: 1
status: public
title: Learning anticipation policies for robot table tennis
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '3338'
abstract:
- lang: eng
  text: 'We consider 2-player games played on a finite state space for an infinite
    number of rounds. The games are concurrent: in each round, the two players (player
    1 and player 2) choose their moves inde- pendently and simultaneously; the current
    state and the two moves determine the successor state. We study concurrent games
    with ω-regular winning conditions specified as parity objectives. We consider
    the qualitative analysis problems: the computation of the almost-sure and limit-sure
    winning set of states, where player 1 can ensure to win with probability 1 and
    with probability arbitrarily close to 1, respec- tively. In general the almost-sure
    and limit-sure winning strategies require both infinite-memory as well as infinite-precision
    (to describe probabilities). We study the bounded-rationality problem for qualitative
    analysis of concurrent parity games, where the strategy set for player 1 is restricted
    to bounded-resource strategies. In terms of precision, strategies can be deterministic,
    uniform, finite-precision or infinite- precision; and in terms of memory, strategies
    can be memoryless, finite-memory or infinite-memory. We present a precise and
    complete characterization of the qualitative winning sets for all combinations
    of classes of strategies. In particular, we show that uniform memoryless strategies
    are as powerful as finite-precision infinite-memory strategies, and infinite-precision
    memoryless strategies are as power- ful as infinite-precision finite-memory strategies.
    We show that the winning sets can be computed in O(n2d+3) time, where n is the
    size of the game structure and 2d is the number of priorities (or colors), and
    our algorithms are symbolic. The membership problem of whether a state belongs
    to a winning set can be decided in NP ∩ coNP. While this complexity is the same
    as for the simpler class of turn-based parity games, where in each state only
    one of the two players has a choice of moves, our algorithms, that are obtained
    by characterization of the winning sets as μ-calculus formulas, are considerably
    more involved than those for turn-based games.'
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
citation:
  ama: Chatterjee K. Bounded rationality in concurrent parity games. <i>arXiv</i>.
    2011:1-51.
  apa: Chatterjee, K. (2011). Bounded rationality in concurrent parity games. <i>arXiv</i>.
    ArXiv.
  chicago: Chatterjee, Krishnendu. “Bounded Rationality in Concurrent Parity Games.”
    <i>ArXiv</i>. ArXiv, 2011.
  ieee: K. Chatterjee, “Bounded rationality in concurrent parity games,” <i>arXiv</i>.
    ArXiv, pp. 1–51, 2011.
  ista: Chatterjee K. 2011. Bounded rationality in concurrent parity games. arXiv,
    1–51, .
  mla: Chatterjee, Krishnendu. “Bounded Rationality in Concurrent Parity Games.” <i>ArXiv</i>,
    ArXiv, 2011, pp. 1–51.
  short: K. Chatterjee, ArXiv (2011) 1–51.
date_created: 2018-12-11T12:02:45Z
date_published: 2011-07-11T00:00:00Z
date_updated: 2023-02-23T12:23:40Z
day: '11'
department:
- _id: KrCh
external_id:
  arxiv:
  - '1107.2146'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1107.2146
month: '07'
oa: 1
oa_version: Preprint
page: 1 - 51
publication: arXiv
publication_status: published
publisher: ArXiv
publist_id: '3287'
related_material:
  record:
  - id: '5380'
    relation: earlier_version
    status: public
status: public
title: Bounded rationality in concurrent parity games
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '3339'
abstract:
- lang: eng
  text: 'Turn-based stochastic games and its important subclass Markov decision processes
    (MDPs) provide models for systems with both probabilistic and nondeterministic
    behaviors. We consider turn-based stochastic games with two classical quantitative
    objectives: discounted-sum and long-run average objectives. The game models and
    the quantitative objectives are widely used in probabilistic verification, planning,
    optimal inventory control, network protocol and performance analysis. Games and
    MDPs that model realistic systems often have very large state spaces, and probabilistic
    abstraction techniques are necessary to handle the state-space explosion. The
    commonly used full-abstraction techniques do not yield space-savings for systems
    that have many states with similar value, but does not necessarily have similar
    transition structure. A semi-abstraction technique, namely Magnifying-lens abstractions
    (MLA), that clusters states based on value only, disregarding differences in their
    transition relation was proposed for qualitative objectives (reachability and
    safety objectives). In this paper we extend the MLA technique to solve stochastic
    games with discounted-sum and long-run average objectives. We present the MLA
    technique based abstraction-refinement algorithm for stochastic games and MDPs
    with discounted-sum objectives. For long-run average objectives, our solution
    works for all MDPs and a sub-class of stochastic games where every state has the
    same value. '
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Luca
  full_name: De Alfaro, Luca
  last_name: De Alfaro
- first_name: Roy
  full_name: Pritam, Roy
  last_name: Pritam
citation:
  ama: Chatterjee K, De Alfaro L, Pritam R. Magnifying lens abstraction for stochastic
    games with discounted and long-run average objectives. <i>arXiv</i>. 2011.
  apa: Chatterjee, K., De Alfaro, L., &#38; Pritam, R. (2011). Magnifying lens abstraction
    for stochastic games with discounted and long-run average objectives. <i>arXiv</i>.
    ArXiv.
  chicago: Chatterjee, Krishnendu, Luca De Alfaro, and Roy Pritam. “Magnifying Lens
    Abstraction for Stochastic Games with Discounted and Long-Run Average Objectives.”
    <i>ArXiv</i>. ArXiv, 2011.
  ieee: K. Chatterjee, L. De Alfaro, and R. Pritam, “Magnifying lens abstraction for
    stochastic games with discounted and long-run average objectives,” <i>arXiv</i>.
    ArXiv, 2011.
  ista: Chatterjee K, De Alfaro L, Pritam R. 2011. Magnifying lens abstraction for
    stochastic games with discounted and long-run average objectives. arXiv, .
  mla: Chatterjee, Krishnendu, et al. “Magnifying Lens Abstraction for Stochastic
    Games with Discounted and Long-Run Average Objectives.” <i>ArXiv</i>, ArXiv, 2011.
  short: K. Chatterjee, L. De Alfaro, R. Pritam, ArXiv (2011).
date_created: 2018-12-11T12:02:46Z
date_published: 2011-07-11T00:00:00Z
date_updated: 2021-01-12T07:42:46Z
day: '11'
department:
- _id: KrCh
external_id:
  arxiv:
  - '1107.2132'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1107.2132
month: '07'
oa: 1
oa_version: Preprint
page: '17'
publication: arXiv
publication_status: published
publisher: ArXiv
publist_id: '3286'
status: public
title: Magnifying lens abstraction for stochastic games with discounted and long-run
  average objectives
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '3342'
abstract:
- lang: eng
  text: 'We consider Markov decision processes (MDPs) with ω-regular specifications
    given as parity objectives. We consider the problem of computing the set of almost-sure
    winning states from where the objective can be ensured with probability 1. The
    algorithms for the computation of the almost-sure winning set for parity objectives
    iteratively use the solutions for the almost-sure winning set for Büchi objectives
    (a special case of parity objectives). Our contributions are as follows: First,
    we present the first subquadratic symbolic algorithm to compute the almost-sure
    winning set for MDPs with Büchi objectives; our algorithm takes O(nm)  symbolic
    steps as compared to the previous known algorithm that takes O(n 2) symbolic steps,
    where n is the number of states and m is the number of edges of the MDP. In practice
    MDPs often have constant out-degree, and then our symbolic algorithm takes O(nn)  symbolic
    steps, as compared to the previous known O(n 2) symbolic steps algorithm. Second,
    we present a new algorithm, namely win-lose algorithm, with the following two
    properties: (a) the algorithm iteratively computes subsets of the almost-sure
    winning set and its complement, as compared to all previous algorithms that discover
    the almost-sure winning set upon termination; and (b) requires O(nK)  symbolic
    steps, where K is the maximal number of edges of strongly connected components
    (scc’s) of the MDP. The win-lose algorithm requires symbolic computation of scc’s.
    Third, we improve the algorithm for symbolic scc computation; the previous known
    algorithm takes linear symbolic steps, and our new algorithm improves the constants
    associated with the linear number of steps. In the worst case the previous known
    algorithm takes 5·n symbolic steps, whereas our new algorithm takes 4 ·n symbolic
    steps.'
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Manas
  full_name: Joglekar, Manas
  last_name: Joglekar
- first_name: Shah
  full_name: Nisarg, Shah
  last_name: Nisarg
citation:
  ama: 'Chatterjee K, Henzinger MH, Joglekar M, Nisarg S. Symbolic algorithms for
    qualitative analysis of Markov decision processes with Büchi objectives. In: Gopalakrishnan
    G, Qadeer S, eds. Vol 6806. Springer; 2011:260-276. doi:<a href="https://doi.org/10.1007/978-3-642-22110-1_21">10.1007/978-3-642-22110-1_21</a>'
  apa: 'Chatterjee, K., Henzinger, M. H., Joglekar, M., &#38; Nisarg, S. (2011). Symbolic
    algorithms for qualitative analysis of Markov decision processes with Büchi objectives.
    In G. Gopalakrishnan &#38; S. Qadeer (Eds.) (Vol. 6806, pp. 260–276). Presented
    at the CAV: Computer Aided Verification, Snowbird, USA: Springer. <a href="https://doi.org/10.1007/978-3-642-22110-1_21">https://doi.org/10.1007/978-3-642-22110-1_21</a>'
  chicago: Chatterjee, Krishnendu, Monika H Henzinger, Manas Joglekar, and Shah Nisarg.
    “Symbolic Algorithms for Qualitative Analysis of Markov Decision Processes with
    Büchi Objectives.” edited by Ganesh Gopalakrishnan and Shaz Qadeer, 6806:260–76.
    Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-22110-1_21">https://doi.org/10.1007/978-3-642-22110-1_21</a>.
  ieee: 'K. Chatterjee, M. H. Henzinger, M. Joglekar, and S. Nisarg, “Symbolic algorithms
    for qualitative analysis of Markov decision processes with Büchi objectives,”
    presented at the CAV: Computer Aided Verification, Snowbird, USA, 2011, vol. 6806,
    pp. 260–276.'
  ista: 'Chatterjee K, Henzinger MH, Joglekar M, Nisarg S. 2011. Symbolic algorithms
    for qualitative analysis of Markov decision processes with Büchi objectives. CAV:
    Computer Aided Verification, LNCS, vol. 6806, 260–276.'
  mla: Chatterjee, Krishnendu, et al. <i>Symbolic Algorithms for Qualitative Analysis
    of Markov Decision Processes with Büchi Objectives</i>. Edited by Ganesh Gopalakrishnan
    and Shaz Qadeer, vol. 6806, Springer, 2011, pp. 260–76, doi:<a href="https://doi.org/10.1007/978-3-642-22110-1_21">10.1007/978-3-642-22110-1_21</a>.
  short: K. Chatterjee, M.H. Henzinger, M. Joglekar, S. Nisarg, in:, G. Gopalakrishnan,
    S. Qadeer (Eds.), Springer, 2011, pp. 260–276.
conference:
  end_date: 2011-07-20
  location: Snowbird, USA
  name: 'CAV: Computer Aided Verification'
  start_date: 2011-07-14
date_created: 2018-12-11T12:02:47Z
date_published: 2011-08-11T00:00:00Z
date_updated: 2023-02-23T11:00:13Z
day: '11'
department:
- _id: KrCh
doi: 10.1007/978-3-642-22110-1_21
editor:
- first_name: Ganesh
  full_name: Gopalakrishnan, Ganesh
  last_name: Gopalakrishnan
- first_name: Shaz
  full_name: Qadeer, Shaz
  last_name: Qadeer
external_id:
  arxiv:
  - '1104.3348'
intvolume: '      6806'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1104.3348
month: '08'
oa: 1
oa_version: Preprint
page: 260 - 276
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication_status: published
publisher: Springer
publist_id: '3282'
quality_controlled: '1'
related_material:
  record:
  - id: '2831'
    relation: later_version
    status: public
status: public
title: Symbolic algorithms for qualitative analysis of Markov decision processes with
  Büchi objectives
type: conference
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 6806
year: '2011'
...
---
_id: '3343'
abstract:
- lang: eng
  text: 'We present faster and dynamic algorithms for the following problems arising
    in probabilistic verification: Computation of the maximal end-component (mec)
    decomposition of Markov decision processes (MDPs), and of the almost sure winning
    set for reachability and parity objectives in MDPs. We achieve the following running
    time for static algorithms in MDPs with graphs of n vertices and m edges: (1)
    O(m · min{ √m, n2/3 }) for the mec decomposition, improving the longstanding O(m·n)
    bound; (2) O(m·n2/3) for reachability objectives, improving the previous O(m ·
    √m) bound for m &gt; n4/3; and (3) O(m · min{ √m, n2/3 } · log(d)) for parity
    objectives with d priorities, improving the previous O(m · √m · d) bound. We also
    give incremental and decremental algorithms in linear time for mec decomposition
    and reachability objectives and O(m · log d) time for parity ob jectives.'
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
citation:
  ama: 'Chatterjee K, Henzinger MH. Faster and dynamic algorithms for maximal end-component
    decomposition and related graph problems in probabilistic verification. In: SIAM;
    2011:1318-1336. doi:<a href="https://doi.org/10.1137/1.9781611973082.101">10.1137/1.9781611973082.101</a>'
  apa: 'Chatterjee, K., &#38; Henzinger, M. H. (2011). Faster and dynamic algorithms
    for maximal end-component decomposition and related graph problems in probabilistic
    verification (pp. 1318–1336). Presented at the SODA: Symposium on Discrete Algorithms,
    San Francisco, SA, United States: SIAM. <a href="https://doi.org/10.1137/1.9781611973082.101">https://doi.org/10.1137/1.9781611973082.101</a>'
  chicago: Chatterjee, Krishnendu, and Monika H Henzinger. “Faster and Dynamic Algorithms
    for Maximal End-Component Decomposition and Related Graph Problems in Probabilistic
    Verification,” 1318–36. SIAM, 2011. <a href="https://doi.org/10.1137/1.9781611973082.101">https://doi.org/10.1137/1.9781611973082.101</a>.
  ieee: 'K. Chatterjee and M. H. Henzinger, “Faster and dynamic algorithms for maximal
    end-component decomposition and related graph problems in probabilistic verification,”
    presented at the SODA: Symposium on Discrete Algorithms, San Francisco, SA, United
    States, 2011, pp. 1318–1336.'
  ista: 'Chatterjee K, Henzinger MH. 2011. Faster and dynamic algorithms for maximal
    end-component decomposition and related graph problems in probabilistic verification.
    SODA: Symposium on Discrete Algorithms, 1318–1336.'
  mla: Chatterjee, Krishnendu, and Monika H. Henzinger. <i>Faster and Dynamic Algorithms
    for Maximal End-Component Decomposition and Related Graph Problems in Probabilistic
    Verification</i>. SIAM, 2011, pp. 1318–36, doi:<a href="https://doi.org/10.1137/1.9781611973082.101">10.1137/1.9781611973082.101</a>.
  short: K. Chatterjee, M.H. Henzinger, in:, SIAM, 2011, pp. 1318–1336.
conference:
  end_date: 2011-01-25
  location: San Francisco, SA, United States
  name: 'SODA: Symposium on Discrete Algorithms'
  start_date: 2011-01-23
date_created: 2018-12-11T12:02:47Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2023-02-14T10:36:10Z
day: '01'
department:
- _id: KrCh
doi: 10.1137/1.9781611973082.101
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprints.cs.univie.ac.at/21/
month: '01'
oa: 1
oa_version: Submitted Version
page: 1318 - 1336
publication_status: published
publisher: SIAM
publist_id: '3278'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Faster and dynamic algorithms for maximal end-component decomposition and related
  graph problems in probabilistic verification
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '3344'
abstract:
- lang: eng
  text: 'Games played on graphs provide the mathematical framework to analyze several
    important problems in computer science as well as mathematics, such as the synthesis
    problem of Church, model checking of open reactive systems and many others. On
    the basis of mode of interaction of the players these games can be classified
    as follows: (a) turn-based (players make moves in turns); and (b) concurrent (players
    make moves simultaneously). On the basis of the information available to the players
    these games can be classified as follows: (a) perfect-information (players have
    perfect view of the game); and (b) partial-information (players have partial view
    of the game). In this talk we will consider all these classes of games with reachability
    objectives, where the goal of one player is to reach a set of target vertices
    of the graph, and the goal of the opponent player is to prevent the player from
    reaching the target. We will survey the results for various classes of games,
    and the results range from linear time decision algorithms to EXPTIME-complete
    problems to undecidable problems.'
alternative_title:
- LNCS
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
citation:
  ama: 'Chatterjee K. Graph games with reachability objectives. In: Delzanno G, Potapov
    I, eds. Vol 6945. Springer; 2011:1-1. doi:<a href="https://doi.org/10.1007/978-3-642-24288-5_1">10.1007/978-3-642-24288-5_1</a>'
  apa: 'Chatterjee, K. (2011). Graph games with reachability objectives. In G. Delzanno
    &#38; I. Potapov (Eds.) (Vol. 6945, pp. 1–1). Presented at the RP: Reachability
    Problems, Genoa, Italy: Springer. <a href="https://doi.org/10.1007/978-3-642-24288-5_1">https://doi.org/10.1007/978-3-642-24288-5_1</a>'
  chicago: Chatterjee, Krishnendu. “Graph Games with Reachability Objectives.” edited
    by Giorgo Delzanno and Igor Potapov, 6945:1–1. Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-24288-5_1">https://doi.org/10.1007/978-3-642-24288-5_1</a>.
  ieee: 'K. Chatterjee, “Graph games with reachability objectives,” presented at the
    RP: Reachability Problems, Genoa, Italy, 2011, vol. 6945, pp. 1–1.'
  ista: 'Chatterjee K. 2011. Graph games with reachability objectives. RP: Reachability
    Problems, LNCS, vol. 6945, 1–1.'
  mla: Chatterjee, Krishnendu. <i>Graph Games with Reachability Objectives</i>. Edited
    by Giorgo Delzanno and Igor Potapov, vol. 6945, Springer, 2011, pp. 1–1, doi:<a
    href="https://doi.org/10.1007/978-3-642-24288-5_1">10.1007/978-3-642-24288-5_1</a>.
  short: K. Chatterjee, in:, G. Delzanno, I. Potapov (Eds.), Springer, 2011, pp. 1–1.
conference:
  end_date: 2011-09-30
  location: Genoa, Italy
  name: 'RP: Reachability Problems'
  start_date: 2011-09-28
date_created: 2018-12-11T12:02:47Z
date_published: 2011-10-15T00:00:00Z
date_updated: 2021-01-12T07:42:48Z
day: '15'
department:
- _id: KrCh
doi: 10.1007/978-3-642-24288-5_1
editor:
- first_name: Giorgo
  full_name: Delzanno, Giorgo
  last_name: Delzanno
- first_name: Igor
  full_name: Potapov, Igor
  last_name: Potapov
intvolume: '      6945'
language:
- iso: eng
month: '10'
oa_version: None
page: 1 - 1
publication_status: published
publisher: Springer
publist_id: '3277'
quality_controlled: '1'
status: public
title: Graph games with reachability objectives
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 6945
year: '2011'
...
---
_id: '10907'
abstract:
- lang: eng
  text: This paper presents a method to create a model of an articulated object using
    the planar motion in an initialization video. The model consists of rigid parts
    connected by points of articulation. The rigid parts are described by the positions
    of salient feature-points tracked throughout the video. Following a filtering
    step that identifies points that belong to different objects, rigid parts are
    found by a grouping process in a graph pyramid. Valid articulation points are
    selected by verifying multiple hypotheses for each pair of parts.
acknowledgement: This work has been partially supported by the Austrian Science Fund
  under grants S9103-N13 and P18716-N13.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Nicole M.
  full_name: Artner, Nicole M.
  last_name: Artner
- first_name: Adrian
  full_name: Ion, Adrian
  id: 29F89302-F248-11E8-B48F-1D18A9856A87
  last_name: Ion
- first_name: Walter G.
  full_name: Kropatsch, Walter G.
  last_name: Kropatsch
citation:
  ama: 'Artner NM, Ion A, Kropatsch WG. Spatio-temporal extraction of articulated
    models in a graph pyramid. In: Jiang X, Ferrer M, Torsello A, eds. <i>Graph-Based
    Representations in Pattern Recognition</i>. Vol 6658. LNIP. Berlin, Heidelberg:
    Springer; 2011:215-224. doi:<a href="https://doi.org/10.1007/978-3-642-20844-7_22">10.1007/978-3-642-20844-7_22</a>'
  apa: 'Artner, N. M., Ion, A., &#38; Kropatsch, W. G. (2011). Spatio-temporal extraction
    of articulated models in a graph pyramid. In X. Jiang, M. Ferrer, &#38; A. Torsello
    (Eds.), <i>Graph-Based Representations in Pattern Recognition</i> (Vol. 6658,
    pp. 215–224). Berlin, Heidelberg: Springer. <a href="https://doi.org/10.1007/978-3-642-20844-7_22">https://doi.org/10.1007/978-3-642-20844-7_22</a>'
  chicago: 'Artner, Nicole M., Adrian Ion, and Walter G. Kropatsch. “Spatio-Temporal
    Extraction of Articulated Models in a Graph Pyramid.” In <i>Graph-Based Representations
    in Pattern Recognition</i>, edited by Xiaoyi Jiang, Miquel Ferrer, and Andrea
    Torsello, 6658:215–24. LNIP. Berlin, Heidelberg: Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-20844-7_22">https://doi.org/10.1007/978-3-642-20844-7_22</a>.'
  ieee: N. M. Artner, A. Ion, and W. G. Kropatsch, “Spatio-temporal extraction of
    articulated models in a graph pyramid,” in <i>Graph-Based Representations in Pattern
    Recognition</i>, Münster, Germany, 2011, vol. 6658, pp. 215–224.
  ista: 'Artner NM, Ion A, Kropatsch WG. 2011. Spatio-temporal extraction of articulated
    models in a graph pyramid. Graph-Based Representations in Pattern Recognition.
    GbRPR: Graph-based Representations in Pattern RecognitionLNIP, LNCS, vol. 6658,
    215–224.'
  mla: Artner, Nicole M., et al. “Spatio-Temporal Extraction of Articulated Models
    in a Graph Pyramid.” <i>Graph-Based Representations in Pattern Recognition</i>,
    edited by Xiaoyi Jiang et al., vol. 6658, Springer, 2011, pp. 215–24, doi:<a href="https://doi.org/10.1007/978-3-642-20844-7_22">10.1007/978-3-642-20844-7_22</a>.
  short: N.M. Artner, A. Ion, W.G. Kropatsch, in:, X. Jiang, M. Ferrer, A. Torsello
    (Eds.), Graph-Based Representations in Pattern Recognition, Springer, Berlin,
    Heidelberg, 2011, pp. 215–224.
conference:
  end_date: 2011-05-20
  location: Münster, Germany
  name: 'GbRPR: Graph-based Representations in Pattern Recognition'
  start_date: 2011-05-18
date_created: 2022-03-21T08:08:35Z
date_published: 2011-06-01T00:00:00Z
date_updated: 2023-09-05T14:10:15Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-642-20844-7_22
editor:
- first_name: Xiaoyi
  full_name: Jiang, Xiaoyi
  last_name: Jiang
- first_name: Miquel
  full_name: Ferrer, Miquel
  last_name: Ferrer
- first_name: Andrea
  full_name: Torsello, Andrea
  last_name: Torsello
intvolume: '      6658'
language:
- iso: eng
month: '06'
oa_version: None
page: 215-224
place: Berlin, Heidelberg
publication: Graph-Based Representations in Pattern Recognition
publication_identifier:
  eisbn:
  - '9783642208447'
  eissn:
  - 1611-3349
  isbn:
  - '9783642208430'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
series_title: LNIP
status: public
title: Spatio-temporal extraction of articulated models in a graph pyramid
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 6658
year: '2011'
...
---
_id: '11094'
abstract:
- lang: eng
  text: Nuclear pore complexes (NPCs) assemble at the end of mitosis during nuclear
    envelope (NE) reformation and into an intact NE as cells progress through interphase.
    Although recent studies have shown that NPC formation occurs by two different
    molecular mechanisms at two distinct cell cycle stages, little is known about
    the molecular players that mediate the fusion of the outer and inner nuclear membranes
    to form pores. In this paper, we provide evidence that the transmembrane nucleoporin
    (Nup), POM121, but not the Nup107–160 complex, is present at new pore assembly
    sites at a time that coincides with inner nuclear membrane (INM) and outer nuclear
    membrane (ONM) fusion. Overexpression of POM121 resulted in juxtaposition of the
    INM and ONM. Additionally, Sun1, an INM protein that is known to interact with
    the cytoskeleton, was specifically required for interphase assembly and localized
    with POM121 at forming pores. We propose a model in which POM121 and Sun1 interact
    transiently to promote early steps of interphase NPC assembly.
article_processing_charge: No
article_type: original
author:
- first_name: Jessica A.
  full_name: Talamas, Jessica A.
  last_name: Talamas
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Talamas JA, Hetzer M. POM121 and Sun1 play a role in early steps of interphase
    NPC assembly. <i>Journal of Cell Biology</i>. 2011;194(1):27-37. doi:<a href="https://doi.org/10.1083/jcb.201012154">10.1083/jcb.201012154</a>
  apa: Talamas, J. A., &#38; Hetzer, M. (2011). POM121 and Sun1 play a role in early
    steps of interphase NPC assembly. <i>Journal of Cell Biology</i>. Rockefeller
    University Press. <a href="https://doi.org/10.1083/jcb.201012154">https://doi.org/10.1083/jcb.201012154</a>
  chicago: Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in
    Early Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>. Rockefeller
    University Press, 2011. <a href="https://doi.org/10.1083/jcb.201012154">https://doi.org/10.1083/jcb.201012154</a>.
  ieee: J. A. Talamas and M. Hetzer, “POM121 and Sun1 play a role in early steps of
    interphase NPC assembly,” <i>Journal of Cell Biology</i>, vol. 194, no. 1. Rockefeller
    University Press, pp. 27–37, 2011.
  ista: Talamas JA, Hetzer M. 2011. POM121 and Sun1 play a role in early steps of
    interphase NPC assembly. Journal of Cell Biology. 194(1), 27–37.
  mla: Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early
    Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>, vol. 194, no.
    1, Rockefeller University Press, 2011, pp. 27–37, doi:<a href="https://doi.org/10.1083/jcb.201012154">10.1083/jcb.201012154</a>.
  short: J.A. Talamas, M. Hetzer, Journal of Cell Biology 194 (2011) 27–37.
date_created: 2022-04-07T07:52:18Z
date_published: 2011-07-04T00:00:00Z
date_updated: 2022-07-18T08:53:46Z
day: '04'
doi: 10.1083/jcb.201012154
extern: '1'
external_id:
  pmid:
  - '21727197'
intvolume: '       194'
issue: '1'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1083/jcb.201012154
month: '07'
oa: 1
oa_version: Published Version
page: 27-37
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: POM121 and Sun1 play a role in early steps of interphase NPC assembly
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 194
year: '2011'
...
---
_id: '11095'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
- first_name: Giacomo
  full_name: Cavalli, Giacomo
  last_name: Cavalli
citation:
  ama: Hetzer M, Cavalli G. Editorial overview. <i>Current Opinion in Cell Biology</i>.
    2011;23(3):255-257. doi:<a href="https://doi.org/10.1016/j.ceb.2011.04.013">10.1016/j.ceb.2011.04.013</a>
  apa: Hetzer, M., &#38; Cavalli, G. (2011). Editorial overview. <i>Current Opinion
    in Cell Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.ceb.2011.04.013">https://doi.org/10.1016/j.ceb.2011.04.013</a>
  chicago: Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion
    in Cell Biology</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.ceb.2011.04.013">https://doi.org/10.1016/j.ceb.2011.04.013</a>.
  ieee: M. Hetzer and G. Cavalli, “Editorial overview,” <i>Current Opinion in Cell
    Biology</i>, vol. 23, no. 3. Elsevier, pp. 255–257, 2011.
  ista: Hetzer M, Cavalli G. 2011. Editorial overview. Current Opinion in Cell Biology.
    23(3), 255–257.
  mla: Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion
    in Cell Biology</i>, vol. 23, no. 3, Elsevier, 2011, pp. 255–57, doi:<a href="https://doi.org/10.1016/j.ceb.2011.04.013">10.1016/j.ceb.2011.04.013</a>.
  short: M. Hetzer, G. Cavalli, Current Opinion in Cell Biology 23 (2011) 255–257.
date_created: 2022-04-07T07:52:27Z
date_published: 2011-06-01T00:00:00Z
date_updated: 2022-07-18T08:39:40Z
day: '01'
doi: 10.1016/j.ceb.2011.04.013
extern: '1'
external_id:
  pmid:
  - '21592757'
intvolume: '        23'
issue: '3'
keyword:
- Cell Biology
language:
- iso: eng
month: '06'
oa_version: None
page: 255-257
pmid: 1
publication: Current Opinion in Cell Biology
publication_identifier:
  issn:
  - 0955-0674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Editorial overview
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 23
year: '2011'
...
---
_id: '11096'
abstract:
- lang: eng
  text: As the gatekeepers of the eukaryotic cell nucleus, nuclear pore complexes
    (NPCs) mediate all molecular trafficking between the nucleoplasm and the cytoplasm.
    In recent years, transport-independent functions of NPC components, nucleoporins,
    have been identified including roles in chromatin organization and gene regulation.
    Here, we summarize our current view of the NPC as a dynamic hub for the integration
    of chromatin regulation and nuclear trafficking and discuss the functional interplay
    between nucleoporins and the nuclear genome.
article_processing_charge: No
article_type: original
author:
- first_name: Yun
  full_name: Liang, Yun
  last_name: Liang
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Liang Y, Hetzer M. Functional interactions between nucleoporins and chromatin.
    <i>Current Opinion in Cell Biology</i>. 2011;23(1):65-70. doi:<a href="https://doi.org/10.1016/j.ceb.2010.09.008">10.1016/j.ceb.2010.09.008</a>
  apa: Liang, Y., &#38; Hetzer, M. (2011). Functional interactions between nucleoporins
    and chromatin. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.ceb.2010.09.008">https://doi.org/10.1016/j.ceb.2010.09.008</a>
  chicago: Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins
    and Chromatin.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.ceb.2010.09.008">https://doi.org/10.1016/j.ceb.2010.09.008</a>.
  ieee: Y. Liang and M. Hetzer, “Functional interactions between nucleoporins and
    chromatin,” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 1. Elsevier,
    pp. 65–70, 2011.
  ista: Liang Y, Hetzer M. 2011. Functional interactions between nucleoporins and
    chromatin. Current Opinion in Cell Biology. 23(1), 65–70.
  mla: Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins
    and Chromatin.” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 1, Elsevier,
    2011, pp. 65–70, doi:<a href="https://doi.org/10.1016/j.ceb.2010.09.008">10.1016/j.ceb.2010.09.008</a>.
  short: Y. Liang, M. Hetzer, Current Opinion in Cell Biology 23 (2011) 65–70.
date_created: 2022-04-07T07:52:37Z
date_published: 2011-02-01T00:00:00Z
date_updated: 2022-07-18T08:53:48Z
day: '01'
doi: 10.1016/j.ceb.2010.09.008
extern: '1'
external_id:
  pmid:
  - '21030234'
intvolume: '        23'
issue: '1'
keyword:
- Cell Biology
language:
- iso: eng
month: '02'
oa_version: None
page: 65-70
pmid: 1
publication: Current Opinion in Cell Biology
publication_identifier:
  issn:
  - 0955-0674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Functional interactions between nucleoporins and chromatin
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 23
year: '2011'
...
---
_id: '11100'
abstract:
- lang: eng
  text: Eukaryotic cell function depends on the physical separation of nucleoplasmic
    and cytoplasmic components by the nuclear envelope (NE). Molecular communication
    between the two compartments involves active, signal-mediated trafficking, a function
    that is exclusively performed by nuclear pore complexes (NPCs). The individual
    NPC components and the mechanisms that are involved in nuclear trafficking are
    well documented and have become textbook knowledge. However, in addition to their
    roles as nuclear gatekeepers, NPC components-nucleoporins-have been shown to have
    critical roles in chromatin organization and gene regulation. These findings have
    sparked new enthusiasm to study the roles of this multiprotein complex in nuclear
    organization and explore novel functions that in some cases appear to go beyond
    a role in transport. Here, we discuss our present view of NPC biogenesis, which
    is tightly linked to proper cell cycle progression and cell differentiation. In
    addition, we summarize new data suggesting that NPCs represent dynamic hubs for
    the integration of gene regulation and nuclear transport processes.
article_processing_charge: No
article_type: original
author:
- first_name: M.
  full_name: Capelson, M.
  last_name: Capelson
- first_name: C.
  full_name: Doucet, C.
  last_name: Doucet
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: 'Capelson M, Doucet C, Hetzer M. Nuclear pore complexes: Guardians of the nuclear
    genome. <i>Cold Spring Harbor Symposia on Quantitative Biology</i>. 2011;75:585-597.
    doi:<a href="https://doi.org/10.1101/sqb.2010.75.059">10.1101/sqb.2010.75.059</a>'
  apa: 'Capelson, M., Doucet, C., &#38; Hetzer, M. (2011). Nuclear pore complexes:
    Guardians of the nuclear genome. <i>Cold Spring Harbor Symposia on Quantitative
    Biology</i>. Cold Spring Harbor Laboratory Press. <a href="https://doi.org/10.1101/sqb.2010.75.059">https://doi.org/10.1101/sqb.2010.75.059</a>'
  chicago: 'Capelson, M., C. Doucet, and Martin Hetzer. “Nuclear Pore Complexes: Guardians
    of the Nuclear Genome.” <i>Cold Spring Harbor Symposia on Quantitative Biology</i>.
    Cold Spring Harbor Laboratory Press, 2011. <a href="https://doi.org/10.1101/sqb.2010.75.059">https://doi.org/10.1101/sqb.2010.75.059</a>.'
  ieee: 'M. Capelson, C. Doucet, and M. Hetzer, “Nuclear pore complexes: Guardians
    of the nuclear genome,” <i>Cold Spring Harbor Symposia on Quantitative Biology</i>,
    vol. 75. Cold Spring Harbor Laboratory Press, pp. 585–597, 2011.'
  ista: 'Capelson M, Doucet C, Hetzer M. 2011. Nuclear pore complexes: Guardians of
    the nuclear genome. Cold Spring Harbor Symposia on Quantitative Biology. 75, 585–597.'
  mla: 'Capelson, M., et al. “Nuclear Pore Complexes: Guardians of the Nuclear Genome.”
    <i>Cold Spring Harbor Symposia on Quantitative Biology</i>, vol. 75, Cold Spring
    Harbor Laboratory Press, 2011, pp. 585–97, doi:<a href="https://doi.org/10.1101/sqb.2010.75.059">10.1101/sqb.2010.75.059</a>.'
  short: M. Capelson, C. Doucet, M. Hetzer, Cold Spring Harbor Symposia on Quantitative
    Biology 75 (2011) 585–597.
date_created: 2022-04-07T07:53:18Z
date_published: 2011-04-18T00:00:00Z
date_updated: 2022-07-18T08:54:23Z
day: '18'
doi: 10.1101/sqb.2010.75.059
extern: '1'
external_id:
  pmid:
  - '21502404'
intvolume: '        75'
keyword:
- Genetics
- Molecular Biology
- Biochemistry
language:
- iso: eng
month: '04'
oa_version: None
page: 585-597
pmid: 1
publication: Cold Spring Harbor Symposia on Quantitative Biology
publication_identifier:
  isbn:
  - '9781936113071'
  issn:
  - 0091-7451
  - 1943-4456
publication_status: published
publisher: Cold Spring Harbor Laboratory Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Nuclear pore complexes: Guardians of the nuclear genome'
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 75
year: '2011'
...
---
_id: '112'
abstract:
- lang: eng
  text: Particle beams are important tools for probing atomic and molecular interactions.
    Here we demonstrate that particle beams also offer a unique opportunity to investigate
    interactions in macroscopic systems, such as granular media. Motivated by recent
    experiments on streams of grains that exhibit liquid-like breakup into droplets,
    we use molecular dynamics simulations to investigate the evolution of a dense
    stream of macroscopic spheres accelerating out of an opening at the bottom of
    a reservoir. We show how nanoscale details associated with energy dissipation
    during collisions modify the stream\'s macroscopic behavior. We find that inelastic
    collisions collimate the stream, while the presence of short-range attractive
    interactions drives structure formation. Parameterizing the collision dynamics
    by the coefficient of restitution (i.e., the ratio of relative velocities before
    and after impact) and the strength of the cohesive interaction, we map out a spectrum
    of behaviors that ranges from gaslike jets in which all grains drift apart to
    liquid-like streams that break into large droplets containing hundreds of grains.
    We also find a new, intermediate regime in which small aggregates form by capture
    from the gas phase, similar to what can be observed in molecular beams. Our results
    show that nearly all aspects of stream behavior are closely related to the velocity
    gradient associated with vertical free fall. Led by this observation, we propose
    a simple energy balance model to explain the droplet formation process. The qualitative
    as well as many quantitative features of the simulations and the model compare
    well with available experimental data and provide a first quantitative measure
    of the role of attractions in freely cooling granular streams.
acknowledgement: This work was supported by the NSF through CBET-0933242. We acknowledge
  use of shared facilities provided by the Keck Facility for Ultrafast Imaging at
  the University of Chicago and by the Chicago MRSEC through NSF DMR-0820054. Software
  support by Itasca Consulting Group, Inc., under the Itasca Educational Partnership
  is gratefully acknowledged. H.G. thanks the German-American Fulbright Commission
  for fellowship support during his stay at the University of Chicago.
article_number: '051302'
arxiv: 1
author:
- first_name: Scott R
  full_name: Waitukaitis, Scott R
  id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
  last_name: Waitukaitis
  orcid: 0000-0002-2299-3176
- first_name: Helge
  full_name: Grütjen, Helge
  last_name: Grütjen
- first_name: John
  full_name: Royer, John
  last_name: Royer
- first_name: Heinrich
  full_name: Jaeger, Heinrich
  last_name: Jaeger
citation:
  ama: Waitukaitis SR, Grütjen H, Royer J, Jaeger H. Droplet and cluster formation
    in freely falling granular streams. <i>Physical Review E</i>. 2011;83(5). doi:<a
    href="https://doi.org/10.1103/PhysRevE.83.051302">10.1103/PhysRevE.83.051302</a>
  apa: Waitukaitis, S. R., Grütjen, H., Royer, J., &#38; Jaeger, H. (2011). Droplet
    and cluster formation in freely falling granular streams. <i>Physical Review E</i>.
    American Physical Society. <a href="https://doi.org/10.1103/PhysRevE.83.051302">https://doi.org/10.1103/PhysRevE.83.051302</a>
  chicago: Waitukaitis, Scott R, Helge Grütjen, John Royer, and Heinrich Jaeger. “Droplet
    and Cluster Formation in Freely Falling Granular Streams.” <i>Physical Review
    E</i>. American Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevE.83.051302">https://doi.org/10.1103/PhysRevE.83.051302</a>.
  ieee: S. R. Waitukaitis, H. Grütjen, J. Royer, and H. Jaeger, “Droplet and cluster
    formation in freely falling granular streams,” <i>Physical Review E</i>, vol.
    83, no. 5. American Physical Society, 2011.
  ista: Waitukaitis SR, Grütjen H, Royer J, Jaeger H. 2011. Droplet and cluster formation
    in freely falling granular streams. Physical Review E. 83(5), 051302.
  mla: Waitukaitis, Scott R., et al. “Droplet and Cluster Formation in Freely Falling
    Granular Streams.” <i>Physical Review E</i>, vol. 83, no. 5, 051302, American
    Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevE.83.051302">10.1103/PhysRevE.83.051302</a>.
  short: S.R. Waitukaitis, H. Grütjen, J. Royer, H. Jaeger, Physical Review E 83 (2011).
date_created: 2018-12-11T11:44:41Z
date_published: 2011-05-12T00:00:00Z
date_updated: 2021-01-12T06:48:25Z
day: '12'
doi: 10.1103/PhysRevE.83.051302
extern: '1'
external_id:
  arxiv:
  - '1006.1371'
intvolume: '        83'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1006.1371
month: '05'
oa: 1
oa_version: Preprint
publication: Physical Review E
publication_status: published
publisher: American Physical Society
publist_id: '7942'
quality_controlled: '1'
status: public
title: Droplet and cluster formation in freely falling granular streams
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 83
year: '2011'
...
---
_id: '11673'
abstract:
- lang: eng
  text: Given only the URL of a Web page, can we identify its topic? We study this
    problem in detail by exploring a large number of different feature sets and algorithms
    on several datasets. We also show that the inherent overlap between topics and
    the sparsity of the information in URLs makes this a very challenging problem.
    Web page classification without a page’s content is desirable when the content
    is not available at all, when a classification is needed before obtaining the
    content, or when classification speed is of utmost importance. For our experiments
    we used five different corpora comprising a total of about 3 million (URL, classification)
    pairs. We evaluated several techniques for feature generation and classification
    algorithms. The individual binary classifiers were then combined via boosting
    into metabinary classifiers. We achieve typical F-measure values between 80 and
    85, and a typical precision of around 86. The precision can be pushed further
    over 90 while maintaining a typical level of recall between 30 and 40.
article_number: '15'
article_processing_charge: No
article_type: original
author:
- first_name: Eda
  full_name: Baykan, Eda
  last_name: Baykan
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Ludmila
  full_name: Marian, Ludmila
  last_name: Marian
- first_name: Ingmar
  full_name: Weber, Ingmar
  last_name: Weber
citation:
  ama: Baykan E, Henzinger MH, Marian L, Weber I. A comprehensive study of features
    and algorithms for URL-based topic classification. <i>ACM Transactions on the
    Web</i>. 2011;5(3). doi:<a href="https://doi.org/10.1145/1993053.1993057">10.1145/1993053.1993057</a>
  apa: Baykan, E., Henzinger, M. H., Marian, L., &#38; Weber, I. (2011). A comprehensive
    study of features and algorithms for URL-based topic classification. <i>ACM Transactions
    on the Web</i>. Association for Computing Machinery. <a href="https://doi.org/10.1145/1993053.1993057">https://doi.org/10.1145/1993053.1993057</a>
  chicago: Baykan, Eda, Monika H Henzinger, Ludmila Marian, and Ingmar Weber. “A Comprehensive
    Study of Features and Algorithms for URL-Based Topic Classification.” <i>ACM Transactions
    on the Web</i>. Association for Computing Machinery, 2011. <a href="https://doi.org/10.1145/1993053.1993057">https://doi.org/10.1145/1993053.1993057</a>.
  ieee: E. Baykan, M. H. Henzinger, L. Marian, and I. Weber, “A comprehensive study
    of features and algorithms for URL-based topic classification,” <i>ACM Transactions
    on the Web</i>, vol. 5, no. 3. Association for Computing Machinery, 2011.
  ista: Baykan E, Henzinger MH, Marian L, Weber I. 2011. A comprehensive study of
    features and algorithms for URL-based topic classification. ACM Transactions on
    the Web. 5(3), 15.
  mla: Baykan, Eda, et al. “A Comprehensive Study of Features and Algorithms for URL-Based
    Topic Classification.” <i>ACM Transactions on the Web</i>, vol. 5, no. 3, 15,
    Association for Computing Machinery, 2011, doi:<a href="https://doi.org/10.1145/1993053.1993057">10.1145/1993053.1993057</a>.
  short: E. Baykan, M.H. Henzinger, L. Marian, I. Weber, ACM Transactions on the Web
    5 (2011).
date_created: 2022-07-27T13:48:11Z
date_published: 2011-07-01T00:00:00Z
date_updated: 2022-09-12T08:46:56Z
day: '01'
doi: 10.1145/1993053.1993057
extern: '1'
intvolume: '         5'
issue: '3'
keyword:
- Topic classification
- URL
- ODP
language:
- iso: eng
month: '07'
oa_version: None
publication: ACM Transactions on the Web
publication_identifier:
  eissn:
  - 1559-114X
  issn:
  - 1559-1131
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: A comprehensive study of features and algorithms for URL-based topic classification
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2011'
...
