---
_id: '6749'
abstract:
- lang: eng
  text: This article refers to algorithms based on finite difference schemes for computing
    mean and affine curvature evolutions of digital images, introduced by Alvarez
    and Morel [L. Alvarez, J.M. Morel, “Formalization and computational aspects of
    image analysis”, Acta Numerica, pp. 159, 1994]. We discuss consistency, stability
    and convergence. Our analysis focuses on some possible choices of the parameters,
    choices that generate multiple variants in the implementations. Meaningful visual
    examples on how the algorithms actually work are provided.
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Adina
  full_name: Ciomaga, Adina
  last_name: Ciomaga
citation:
  ama: Mondelli M, Ciomaga A. Finite difference schemes for MCM and AMSS. <i>Image
    Processing On Line</i>. 2011;1:127-177. doi:<a href="https://doi.org/10.5201/ipol.2011.cm_fds">10.5201/ipol.2011.cm_fds</a>
  apa: Mondelli, M., &#38; Ciomaga, A. (2011). Finite difference schemes for MCM and
    AMSS. <i>Image Processing On Line</i>. IPOL Image Processing On Line. <a href="https://doi.org/10.5201/ipol.2011.cm_fds">https://doi.org/10.5201/ipol.2011.cm_fds</a>
  chicago: Mondelli, Marco, and Adina Ciomaga. “Finite Difference Schemes for MCM
    and AMSS.” <i>Image Processing On Line</i>. IPOL Image Processing On Line, 2011.
    <a href="https://doi.org/10.5201/ipol.2011.cm_fds">https://doi.org/10.5201/ipol.2011.cm_fds</a>.
  ieee: M. Mondelli and A. Ciomaga, “Finite difference schemes for MCM and AMSS,”
    <i>Image Processing On Line</i>, vol. 1. IPOL Image Processing On Line, pp. 127–177,
    2011.
  ista: Mondelli M, Ciomaga A. 2011. Finite difference schemes for MCM and AMSS. Image
    Processing On Line. 1, 127–177.
  mla: Mondelli, Marco, and Adina Ciomaga. “Finite Difference Schemes for MCM and
    AMSS.” <i>Image Processing On Line</i>, vol. 1, IPOL Image Processing On Line,
    2011, pp. 127–77, doi:<a href="https://doi.org/10.5201/ipol.2011.cm_fds">10.5201/ipol.2011.cm_fds</a>.
  short: M. Mondelli, A. Ciomaga, Image Processing On Line 1 (2011) 127–177.
date_created: 2019-07-31T09:44:24Z
date_published: 2011-09-13T00:00:00Z
date_updated: 2021-01-12T08:08:50Z
day: '13'
ddc:
- '000'
doi: 10.5201/ipol.2011.cm_fds
extern: '1'
file:
- access_level: open_access
  checksum: 910710811224c633202791e0c217d05d
  content_type: application/pdf
  creator: dernst
  date_created: 2019-08-01T06:34:21Z
  date_updated: 2020-07-14T12:47:39Z
  file_id: '6751'
  file_name: 2011_IPOL_Mondelli.pdf
  file_size: 2793903
  relation: main_file
file_date_updated: 2020-07-14T12:47:39Z
has_accepted_license: '1'
intvolume: '         1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '09'
oa: 1
oa_version: Published Version
page: 127-177
publication: Image Processing On Line
publication_identifier:
  issn:
  - 2105-1232
publication_status: published
publisher: IPOL Image Processing On Line
quality_controlled: '1'
status: public
title: Finite difference schemes for MCM and AMSS
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2011'
...
---
_id: '6767'
abstract:
- lang: eng
  text: "In the present paper we give a thorough analysis of two finite difference
    schemes for the Mean Curvature Motion and its affine variant, the Affine Morphological
    Scale Space, schemes introduced in the Image Processing framework. This analysis
    brings in a series of parameters that allow us to compute an accurate discrete
    evolution of curvature motions.\r\nThe choice of these parameters is based on
    intrinsic geometric properties of the evolution equations for linear, radial and
    elliptical functions. In the last part we present several examples, underlining
    the main advantages of the algorithms (the removal of pixelization effects and
    JPEG artifacts) as well as their major drawbacks (absence of contrast invariance
    and grid dependence). A detailed explanatory report, the ANSI C implementations
    and an on-line demo can be found at http://www.ipol.im/."
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Adina
  full_name: Ciomaga, Adina
  last_name: Ciomaga
citation:
  ama: 'Mondelli M, Ciomaga A. On finite difference schemes for curvature motions.
    In: <i>Proceedings of the International Student Conference on Pure and Applied
    Mathematics</i>. Editura Universitãtii „Alexandru Ioan Cuza” Iasi; 2011:137-156.
    doi:<a href="https://doi.org/10.13140/2.1.1862.4646">10.13140/2.1.1862.4646</a>'
  apa: 'Mondelli, M., &#38; Ciomaga, A. (2011). On finite difference schemes for curvature
    motions. In <i>Proceedings of the International Student Conference on Pure and
    Applied Mathematics</i> (pp. 137–156). Iasi, Romania: Editura Universitãtii „Alexandru
    Ioan Cuza” Iasi. <a href="https://doi.org/10.13140/2.1.1862.4646">https://doi.org/10.13140/2.1.1862.4646</a>'
  chicago: Mondelli, Marco, and Adina Ciomaga. “On Finite Difference Schemes for Curvature
    Motions.” In <i>Proceedings of the International Student Conference on Pure and
    Applied Mathematics</i>, 137–56. Editura Universitãtii „Alexandru Ioan Cuza” Iasi,
    2011. <a href="https://doi.org/10.13140/2.1.1862.4646">https://doi.org/10.13140/2.1.1862.4646</a>.
  ieee: M. Mondelli and A. Ciomaga, “On finite difference schemes for curvature motions,”
    in <i>Proceedings of the International Student Conference on Pure and Applied
    Mathematics</i>, Iasi, Romania, 2011, pp. 137–156.
  ista: 'Mondelli M, Ciomaga A. 2011. On finite difference schemes for curvature motions.
    Proceedings of the International Student Conference on Pure and Applied Mathematics.
    ISCOPAM: International Student Conference on Pure and Applied Mathematics, 137–156.'
  mla: Mondelli, Marco, and Adina Ciomaga. “On Finite Difference Schemes for Curvature
    Motions.” <i>Proceedings of the International Student Conference on Pure and Applied
    Mathematics</i>, Editura Universitãtii „Alexandru Ioan Cuza” Iasi, 2011, pp. 137–56,
    doi:<a href="https://doi.org/10.13140/2.1.1862.4646">10.13140/2.1.1862.4646</a>.
  short: M. Mondelli, A. Ciomaga, in:, Proceedings of the International Student Conference
    on Pure and Applied Mathematics, Editura Universitãtii „Alexandru Ioan Cuza” Iasi,
    2011, pp. 137–156.
conference:
  end_date: 2010-07-16
  location: Iasi, Romania
  name: 'ISCOPAM: International Student Conference on Pure and Applied Mathematics'
  start_date: 2010-07-12
date_created: 2019-08-05T12:20:58Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T08:08:56Z
day: '01'
doi: 10.13140/2.1.1862.4646
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 137-156
publication: Proceedings of the International Student Conference on Pure and Applied
  Mathematics
publication_identifier:
  isbn:
  - 978-973-703-602-5
publication_status: published
publisher: Editura Universitãtii „Alexandru Ioan Cuza” Iasi
quality_controlled: '1'
status: public
title: On finite difference schemes for curvature motions
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '10389'
abstract:
- lang: eng
  text: We perform numerical simulations to study self-assembly of nanoparticles mediated
    by an elastic planar surface. We show how the nontrivial elastic response to deformations
    of these surfaces leads to anisotropic interactions between the particles resulting
    in aggregates having different geometrical features. The morphology of the patterns
    can be controlled by the mechanical properties of the surface and the strength
    of the particle adhesion. We use simple scaling arguments to understand the formation
    of the different structures, and we show how the adhering particles can cause
    the underlying elastic substrate to wrinkle if two of its opposite edges are clamped.
    Finally, we discuss the implications of our results and suggest how elastic surfaces
    could be used in nanofabrication.
acknowledgement: This work was supported by the National Science Foundation under
  Career Grant No. DMR-0846426. We thank Josep C. Pàmies and William L. Miller for
  helpful discussions.
article_number: '8324'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
- first_name: Angelo
  full_name: Cacciuto, Angelo
  last_name: Cacciuto
citation:
  ama: Šarić A, Cacciuto A. Soft elastic surfaces as a platform for particle self-assembly.
    <i>Soft Matter</i>. 2011;7(18). doi:<a href="https://doi.org/10.1039/c1sm05773a">10.1039/c1sm05773a</a>
  apa: Šarić, A., &#38; Cacciuto, A. (2011). Soft elastic surfaces as a platform for
    particle self-assembly. <i>Soft Matter</i>. Royal Society of Chemistry. <a href="https://doi.org/10.1039/c1sm05773a">https://doi.org/10.1039/c1sm05773a</a>
  chicago: Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform
    for Particle Self-Assembly.” <i>Soft Matter</i>. Royal Society of Chemistry, 2011.
    <a href="https://doi.org/10.1039/c1sm05773a">https://doi.org/10.1039/c1sm05773a</a>.
  ieee: A. Šarić and A. Cacciuto, “Soft elastic surfaces as a platform for particle
    self-assembly,” <i>Soft Matter</i>, vol. 7, no. 18. Royal Society of Chemistry,
    2011.
  ista: Šarić A, Cacciuto A. 2011. Soft elastic surfaces as a platform for particle
    self-assembly. Soft Matter. 7(18), 8324.
  mla: Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform for
    Particle Self-Assembly.” <i>Soft Matter</i>, vol. 7, no. 18, 8324, Royal Society
    of Chemistry, 2011, doi:<a href="https://doi.org/10.1039/c1sm05773a">10.1039/c1sm05773a</a>.
  short: A. Šarić, A. Cacciuto, Soft Matter 7 (2011).
date_created: 2021-11-29T14:33:18Z
date_published: 2011-08-08T00:00:00Z
date_updated: 2021-11-29T15:12:10Z
day: '08'
doi: 10.1039/c1sm05773a
extern: '1'
external_id:
  arxiv:
  - '1106.2995'
intvolume: '         7'
issue: '18'
keyword:
- condensed matter physics
- general chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1106.2995
month: '08'
oa: 1
oa_version: Preprint
publication: Soft Matter
publication_identifier:
  eissn:
  - 1744-6848
  issn:
  - 1744-683X
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Soft elastic surfaces as a platform for particle self-assembly
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 7
year: '2011'
...
---
_id: '1048'
abstract:
- lang: eng
  text: We produce an ultracold and dense sample of rovibronic ground state Cs 2 molecules
    close to the regime of quantum degeneracy, in a single hyperfine level, in the
    presence of an optical lattice. The molecules are individually trapped, in the
    motional ground state of an optical lattice well, with a lifetime of 8 s. For
    preparation, we start with a zero-temperature atomic Mott-insulator state with
    optimized double-site occupancy and efficiently associate weakly-bound dimer molecules
    on a Feshbach resonance. Despite extremely weak Franck-Condon wavefunction overlap,
    the molecules are subsequently transferred with &gt;50% efficiency to the rovibronic
    ground state by a stimulated four-photon process. Our results present a crucial
    step towards the generation of Bose-Einstein condensates of ground-state molecules
    and, when suitably generalized to polar heteronuclear molecules such as RbCs,
    the realization of dipolar many-body quantum-gas phases in periodic potentials.
acknowledgement: "We thank H. Ritsch, N. Bouloufa, O. Dulieu, J. Aldegunde, J. M.
  Hutson, H. Salami, T. Bergeman,  S. D ̈urr, and K. Bergmann for valuable discussions
  and H. Telle, H. Schnatz, B. Lipphardt, and J. Alnis for sharing technical expertise.
  We are indebted to R. Grimm for generous support. We gratefully acknowledge funding
  by the Austrian Ministry of Science and\r\nResearch (Bundesministerium f ̈ur Wissenschaft
  und Forschung) and the Austrian Science Fund\r\n(Fonds zur F ̈orderung der wissenschaftlichen
  Forschung) in the form of a START prize grant\r\nand by the European Science Foundation
  within the framework of the EuroQUASAR collective\r\nresearch project QuDeGPM (Project
  I 153-N16) and within the framework of the EuroQUAM\r\ncollective research project
  QuDipMol (Project I 124-N16).  R.H. was supported by a Marie Curie\r\nInternational
  Incoming Fellowship within the 7th European Community Framework Programme"
article_processing_charge: No
arxiv: 1
author:
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Mattias
  full_name: Gustavsson, Mattias
  last_name: Gustavsson
- first_name: Russell
  full_name: Hart, Russell
  last_name: Hart
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
citation:
  ama: 'Nägerl H, Mark M, Haller E, Gustavsson M, Hart R, Danzl JG. Ultracold and
    dense samples of ground-state molecules in lattice potentials. <i>Journal of Physics:
    Conference Series</i>. 2011;264(1). doi:<a href="https://doi.org/10.1088/1742-6596/264/1/012015">10.1088/1742-6596/264/1/012015</a>'
  apa: 'Nägerl, H., Mark, M., Haller, E., Gustavsson, M., Hart, R., &#38; Danzl, J.
    G. (2011). Ultracold and dense samples of ground-state molecules in lattice potentials.
    <i>Journal of Physics: Conference Series</i>. IOP Publishing Ltd. <a href="https://doi.org/10.1088/1742-6596/264/1/012015">https://doi.org/10.1088/1742-6596/264/1/012015</a>'
  chicago: 'Nägerl, Hanns, Manfred Mark, Elmar Haller, Mattias Gustavsson, Russell
    Hart, and Johann G Danzl. “Ultracold and Dense Samples of Ground-State Molecules
    in Lattice Potentials.” <i>Journal of Physics: Conference Series</i>. IOP Publishing
    Ltd., 2011. <a href="https://doi.org/10.1088/1742-6596/264/1/012015">https://doi.org/10.1088/1742-6596/264/1/012015</a>.'
  ieee: 'H. Nägerl, M. Mark, E. Haller, M. Gustavsson, R. Hart, and J. G. Danzl, “Ultracold
    and dense samples of ground-state molecules in lattice potentials,” <i>Journal
    of Physics: Conference Series</i>, vol. 264, no. 1. IOP Publishing Ltd., 2011.'
  ista: 'Nägerl H, Mark M, Haller E, Gustavsson M, Hart R, Danzl JG. 2011. Ultracold
    and dense samples of ground-state molecules in lattice potentials. Journal of
    Physics: Conference Series. 264(1).'
  mla: 'Nägerl, Hanns, et al. “Ultracold and Dense Samples of Ground-State Molecules
    in Lattice Potentials.” <i>Journal of Physics: Conference Series</i>, vol. 264,
    no. 1, IOP Publishing Ltd., 2011, doi:<a href="https://doi.org/10.1088/1742-6596/264/1/012015">10.1088/1742-6596/264/1/012015</a>.'
  short: 'H. Nägerl, M. Mark, E. Haller, M. Gustavsson, R. Hart, J.G. Danzl, Journal
    of Physics: Conference Series 264 (2011).'
date_created: 2018-12-11T11:49:52Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T06:47:54Z
day: '01'
doi: 10.1088/1742-6596/264/1/012015
extern: '1'
external_id:
  arxiv:
  - '1011.0179'
intvolume: '       264'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1011.0179
month: '01'
oa: 1
oa_version: Preprint
publication: 'Journal of Physics: Conference Series'
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '6340'
status: public
title: Ultracold and dense samples of ground-state molecules in lattice potentials
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 264
year: '2011'
...
---
_id: '1050'
abstract:
- lang: eng
  text: We present experimentally derived potential curves 1?and spin-orbit interaction
    functions for the strongly perturbed AΣu+ 3?and bΠu states of the cesium dimer.
    The results are based on data from several sources. Laser-induced fluorescence
    Fourier transform spectroscopy (LIF FTS) was used some time ago in the Laboratoire
    Aimé Cotton primarily to study the XΣg+ state. More recent work at Tsinghua University
    provides information from moderate 3?resolution spectroscopy on the lowest levels
    of the bΠ0u± state as well as additional high-resolution data. From Innsbruck
    University, we have precision data obtained with cold Cs2 molecules. Recent data
    from Temple University was obtained using the optical-optical double resonance
    polarization spectroscopy technique, and finally, a group at the University of
    Latvia has added additional LIF FTS data. In the Hamiltonian matrix, we have used
    analytic potentials (the expanded Morse oscillator form) with both finite-difference
    (FD) coupled-channel and discrete variable representation (DVR) calculations of
    the term values. Fitted diagonal and off-diagonal spin-orbit functions are obtained
    and compared with ab initio results from Temple and Moscow State universities.
acknowledgement: The work in Temple University was supported by NSF grant no. PHY-0855502.
  S.K. acknowledges support from AFOSR and from NSF grant no. PHY-1005453. S.A., C.M.,
  and J.H. were supported by NSF grants no. PHY-0652938 and PHY-0968898. The work
  at Stony Brook was supported by NSF grants no. PHY-0652459 and PHY-0968905. The
  work in Tsinghua University was supported by NSFC of China, under grant no. 20773072.
  The Moscow team thanks the Russian Foundation for Basic Researches by the grant
  no. 10-03-00195 and MSU Priority Direction 2.3. M.T. and R.F. are grateful to Ilze
  Klincare, Olga Nikolayeva, and Artis Kruzins for their help in spectra analysis,
  as well as appreciate the support from the ESF 2009/0223/1DP/1.1.1.2.0/09/APIA/VIAA/008
  project.
article_processing_charge: No
arxiv: 1
author:
- first_name: Jianmei
  full_name: Bai, Jianmei
  last_name: Bai
- first_name: Ergin
  full_name: Ahmed, Ergin
  last_name: Ahmed
- first_name: Bediha
  full_name: Beser, Bediha
  last_name: Beser
- first_name: Yafei
  full_name: Guan, Yafei
  last_name: Guan
- first_name: Svetlana
  full_name: Kotochigova, Svetlana
  last_name: Kotochigova
- first_name: Marjatta
  full_name: Lyyra, Marjatta
  last_name: Lyyra
- first_name: Seth
  full_name: Ashman, Seth
  last_name: Ashman
- first_name: Christopher
  full_name: Wolfe, Christopher
  last_name: Wolfe
- first_name: John
  full_name: Huennekens, John
  last_name: Huennekens
- first_name: Feng
  full_name: Xie, Feng
  last_name: Xie
- first_name: Dan
  full_name: Li, Dan
  last_name: Li
- first_name: Li
  full_name: Li, Li
  last_name: Li
- first_name: Maris
  full_name: Tamanis, Maris
  last_name: Tamanis
- first_name: Ruvin
  full_name: Ferber, Ruvin
  last_name: Ferber
- first_name: Anastasia
  full_name: Drozdova, Anastasia
  last_name: Drozdova
- first_name: Elena
  full_name: Pazyuk, Elena
  last_name: Pazyuk
- first_name: Andrey
  full_name: Stolyarov, Andrey
  last_name: Stolyarov
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
- first_name: Nadia
  full_name: Bouloufa, Nadia
  last_name: Bouloufa
- first_name: Olivier
  full_name: Dulieu, Olivier
  last_name: Dulieu
- first_name: Claude
  full_name: Amiot, Claude
  last_name: Amiot
- first_name: Houssam
  full_name: Salami, Houssam
  last_name: Salami
- first_name: Thomas
  full_name: Bergeman, Thomas
  last_name: Bergeman
citation:
  ama: Bai J, Ahmed E, Beser B, et al. Global analysis of data on the spin-orbit-coupled
    A 1Σu+ and b 3Πu inf states of Cs2. <i> Physical Review A - Atomic, Molecular,
    and Optical Physics</i>. 2011;83(3). doi:<a href="https://doi.org/10.1103/PhysRevA.83.032514">10.1103/PhysRevA.83.032514</a>
  apa: Bai, J., Ahmed, E., Beser, B., Guan, Y., Kotochigova, S., Lyyra, M., … Bergeman,
    T. (2011). Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu
    inf states of Cs2. <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>.
    American Physical Society. <a href="https://doi.org/10.1103/PhysRevA.83.032514">https://doi.org/10.1103/PhysRevA.83.032514</a>
  chicago: Bai, Jianmei, Ergin Ahmed, Bediha Beser, Yafei Guan, Svetlana Kotochigova,
    Marjatta Lyyra, Seth Ashman, et al. “Global Analysis of Data on the Spin-Orbit-Coupled
    A 1Σu+ and b 3Πu Inf States of Cs2.” <i> Physical Review A - Atomic, Molecular,
    and Optical Physics</i>. American Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevA.83.032514">https://doi.org/10.1103/PhysRevA.83.032514</a>.
  ieee: J. Bai <i>et al.</i>, “Global analysis of data on the spin-orbit-coupled A
    1Σu+ and b 3Πu inf states of Cs2,” <i> Physical Review A - Atomic, Molecular,
    and Optical Physics</i>, vol. 83, no. 3. American Physical Society, 2011.
  ista: Bai J, Ahmed E, Beser B, Guan Y, Kotochigova S, Lyyra M, Ashman S, Wolfe C,
    Huennekens J, Xie F, Li D, Li L, Tamanis M, Ferber R, Drozdova A, Pazyuk E, Stolyarov
    A, Danzl JG, Nägerl H, Bouloufa N, Dulieu O, Amiot C, Salami H, Bergeman T. 2011.
    Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states
    of Cs2.  Physical Review A - Atomic, Molecular, and Optical Physics. 83(3).
  mla: Bai, Jianmei, et al. “Global Analysis of Data on the Spin-Orbit-Coupled A 1Σu+
    and b 3Πu Inf States of Cs2.” <i> Physical Review A - Atomic, Molecular, and Optical
    Physics</i>, vol. 83, no. 3, American Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevA.83.032514">10.1103/PhysRevA.83.032514</a>.
  short: J. Bai, E. Ahmed, B. Beser, Y. Guan, S. Kotochigova, M. Lyyra, S. Ashman,
    C. Wolfe, J. Huennekens, F. Xie, D. Li, L. Li, M. Tamanis, R. Ferber, A. Drozdova,
    E. Pazyuk, A. Stolyarov, J.G. Danzl, H. Nägerl, N. Bouloufa, O. Dulieu, C. Amiot,
    H. Salami, T. Bergeman,  Physical Review A - Atomic, Molecular, and Optical Physics
    83 (2011).
date_created: 2018-12-11T11:49:53Z
date_published: 2011-03-28T00:00:00Z
date_updated: 2021-01-12T06:47:55Z
day: '28'
doi: 10.1103/PhysRevA.83.032514
extern: '1'
external_id:
  arxiv:
  - '1101.5412'
intvolume: '        83'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1101.5412
month: '03'
oa: 1
oa_version: Preprint
publication: ' Physical Review A - Atomic, Molecular, and Optical Physics'
publication_status: published
publisher: American Physical Society
publist_id: '6339'
status: public
title: Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states
  of Cs2
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 83
year: '2011'
...
---
_id: '1051'
abstract:
- lang: eng
  text: We demonstrate the temporal Talbot effect for trapped matter waves using ultracold
    atoms in an optical lattice. We investigate the phase evolution of an array of
    essentially non-interacting matter waves and observe matter-wave collapse and
    revival in the form of a Talbot interference pattern. By using long expansion
    times, we image momentum space with sub-recoil resolution, allowing us to observe
    fractional Talbot fringes up to tenth order.
acknowledgement: We are indebted to R Grimm for generous support and we thank A Daley
  for valuable discussions. We gratefully acknowledge funding by the Austrian Science
  Fund (FWF) within project I153-N16 and within the framework of the European Science
  Foundation (ESF) EuroQUASAR collective research project QuDeGPM.
article_processing_charge: No
author:
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Katharina
  full_name: Lauber, Katharina
  last_name: Lauber
- first_name: Mattias
  full_name: Gustavsson, Mattias
  last_name: Gustavsson
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
citation:
  ama: Mark M, Haller E, Danzl JG, Lauber K, Gustavsson M, Nägerl H. Demonstration
    of the temporal matter-wave Talbot effect for trapped matter waves. <i>New Journal
    of Physics</i>. 2011;13. doi:<a href="https://doi.org/10.1088/1367-2630/13/8/085008">10.1088/1367-2630/13/8/085008</a>
  apa: Mark, M., Haller, E., Danzl, J. G., Lauber, K., Gustavsson, M., &#38; Nägerl,
    H. (2011). Demonstration of the temporal matter-wave Talbot effect for trapped
    matter waves. <i>New Journal of Physics</i>. IOP Publishing Ltd. <a href="https://doi.org/10.1088/1367-2630/13/8/085008">https://doi.org/10.1088/1367-2630/13/8/085008</a>
  chicago: Mark, Manfred, Elmar Haller, Johann G Danzl, Katharina Lauber, Mattias
    Gustavsson, and Hanns Nägerl. “Demonstration of the Temporal Matter-Wave Talbot
    Effect for Trapped Matter Waves.” <i>New Journal of Physics</i>. IOP Publishing
    Ltd., 2011. <a href="https://doi.org/10.1088/1367-2630/13/8/085008">https://doi.org/10.1088/1367-2630/13/8/085008</a>.
  ieee: M. Mark, E. Haller, J. G. Danzl, K. Lauber, M. Gustavsson, and H. Nägerl,
    “Demonstration of the temporal matter-wave Talbot effect for trapped matter waves,”
    <i>New Journal of Physics</i>, vol. 13. IOP Publishing Ltd., 2011.
  ista: Mark M, Haller E, Danzl JG, Lauber K, Gustavsson M, Nägerl H. 2011. Demonstration
    of the temporal matter-wave Talbot effect for trapped matter waves. New Journal
    of Physics. 13.
  mla: Mark, Manfred, et al. “Demonstration of the Temporal Matter-Wave Talbot Effect
    for Trapped Matter Waves.” <i>New Journal of Physics</i>, vol. 13, IOP Publishing
    Ltd., 2011, doi:<a href="https://doi.org/10.1088/1367-2630/13/8/085008">10.1088/1367-2630/13/8/085008</a>.
  short: M. Mark, E. Haller, J.G. Danzl, K. Lauber, M. Gustavsson, H. Nägerl, New
    Journal of Physics 13 (2011).
date_created: 2018-12-11T11:49:53Z
date_published: 2011-08-01T00:00:00Z
date_updated: 2021-01-12T06:47:56Z
day: '01'
doi: 10.1088/1367-2630/13/8/085008
extern: '1'
intvolume: '        13'
language:
- iso: eng
month: '08'
oa_version: None
publication: New Journal of Physics
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '6338'
status: public
title: Demonstration of the temporal matter-wave Talbot effect for trapped matter
  waves
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2011'
...
---
_id: '1052'
abstract:
- lang: eng
  text: The present paper aims at finding optimal parameters for trapping of Cs 2
    molecules in optical lattices, with the perspective of creating a quantum degenerate
    gas of ground-state molecules. We have calculated dynamic polarizabilities of
    Cs 2 molecules subject to an oscillating electric field, using accurate potential
    curves and electronic transition dipole moments. We show that for some particular
    wavelengths of the optical lattice, called &quot;magic wavelengths&quot;, the
    polarizability of the ground-state molecules is equal to the one of a Feshbach
    molecule. As the creation of the sample of ground-state molecules relies on an
    adiabatic population transfer from weakly-bound molecules created on a Feshbach
    resonance, such a coincidence ensures that both the initial and final states are
    favorably trapped by the lattice light, allowing optimized transfer in agreement
    with the experimental observation.
acknowledgement: "We thank E. Haller for important contributions to the experimental
  work and R. Grimm for generous support. We acknowledge  funding  by  the  Austrian
  \ Science  Fund  (FWF)  within\r\nproject Quantum Gases  of Ground-State Molecules,
  \ project\r\nnumber P 21555-N20."
article_processing_charge: No
arxiv: 1
author:
- first_name: Romain
  full_name: Vexiau, Romain
  last_name: Vexiau
- first_name: Nadia
  full_name: Bouloufa, Nadia
  last_name: Bouloufa
- first_name: Mireille
  full_name: Aymar, Mireille
  last_name: Aymar
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
- first_name: Olivier
  full_name: Dulieu, Olivier
  last_name: Dulieu
citation:
  ama: Vexiau R, Bouloufa N, Aymar M, et al. Optimal trapping wavelengths of Cs 2
    molecules in an optical lattice. <i>European Physical Journal D</i>. 2011;65(1-2):243-250.
    doi:<a href="https://doi.org/10.1140/epjd/e2011-20085-4">10.1140/epjd/e2011-20085-4</a>
  apa: Vexiau, R., Bouloufa, N., Aymar, M., Danzl, J. G., Mark, M., Nägerl, H., &#38;
    Dulieu, O. (2011). Optimal trapping wavelengths of Cs 2 molecules in an optical
    lattice. <i>European Physical Journal D</i>. Springer. <a href="https://doi.org/10.1140/epjd/e2011-20085-4">https://doi.org/10.1140/epjd/e2011-20085-4</a>
  chicago: Vexiau, Romain, Nadia Bouloufa, Mireille Aymar, Johann G Danzl, Manfred
    Mark, Hanns Nägerl, and Olivier Dulieu. “Optimal Trapping Wavelengths of Cs 2
    Molecules in an Optical Lattice.” <i>European Physical Journal D</i>. Springer,
    2011. <a href="https://doi.org/10.1140/epjd/e2011-20085-4">https://doi.org/10.1140/epjd/e2011-20085-4</a>.
  ieee: R. Vexiau <i>et al.</i>, “Optimal trapping wavelengths of Cs 2 molecules in
    an optical lattice,” <i>European Physical Journal D</i>, vol. 65, no. 1–2. Springer,
    pp. 243–250, 2011.
  ista: Vexiau R, Bouloufa N, Aymar M, Danzl JG, Mark M, Nägerl H, Dulieu O. 2011.
    Optimal trapping wavelengths of Cs 2 molecules in an optical lattice. European
    Physical Journal D. 65(1–2), 243–250.
  mla: Vexiau, Romain, et al. “Optimal Trapping Wavelengths of Cs 2 Molecules in an
    Optical Lattice.” <i>European Physical Journal D</i>, vol. 65, no. 1–2, Springer,
    2011, pp. 243–50, doi:<a href="https://doi.org/10.1140/epjd/e2011-20085-4">10.1140/epjd/e2011-20085-4</a>.
  short: R. Vexiau, N. Bouloufa, M. Aymar, J.G. Danzl, M. Mark, H. Nägerl, O. Dulieu,
    European Physical Journal D 65 (2011) 243–250.
date_created: 2018-12-11T11:49:53Z
date_published: 2011-11-01T00:00:00Z
date_updated: 2021-01-12T06:47:56Z
day: '01'
doi: 10.1140/epjd/e2011-20085-4
extern: '1'
external_id:
  arxiv:
  - '1102.1793'
intvolume: '        65'
issue: 1-2
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1102.1793
month: '11'
oa: 1
oa_version: Preprint
page: 243 - 250
publication: European Physical Journal D
publication_status: published
publisher: Springer
publist_id: '6336'
status: public
title: Optimal trapping wavelengths of Cs 2 molecules in an optical lattice
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 65
year: '2011'
...
---
_id: '1053'
abstract:
- lang: eng
  text: We perform precision measurements on a Mott-insulator quantum state of ultracold
    atoms with tunable interactions. We probe the dependence of the superfluid-to-Mott-insulator
    transition on the interaction strength and explore the limits of the standard
    Bose-Hubbard model description. By tuning the on-site interaction energies to
    values comparable to the interband separation, we are able to quantitatively measure
    number-dependent shifts in the excitation spectrum caused by effective multibody
    interactions.
acknowledgement: We are indebted to R. Grimm for generous support. We thank D. Boyanovsky,
  H. Büchler, P. Johnson, W. Niedenzu, and E. Tiesinga for fruitful discussions. We
  gratefully acknowledge funding by the Austrian Science Fund (FWF) within project
  I153-N16 and within the framework of the European Science Foundation (ESF) EuroQUASAR
  collective research project QuDeGPM.
article_processing_charge: No
arxiv: 1
author:
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Katharina
  full_name: Lauber, Katharina
  last_name: Lauber
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Andrew
  full_name: Daley, Andrew
  last_name: Daley
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
citation:
  ama: Mark M, Haller E, Lauber K, Danzl JG, Daley A, Nägerl H. Precision measurements
    on a tunable Mott insulator of ultracold atoms. <i>Physical Review Letters</i>.
    2011;107(17). doi:<a href="https://doi.org/10.1103/PhysRevLett.107.175301">10.1103/PhysRevLett.107.175301</a>
  apa: Mark, M., Haller, E., Lauber, K., Danzl, J. G., Daley, A., &#38; Nägerl, H.
    (2011). Precision measurements on a tunable Mott insulator of ultracold atoms.
    <i>Physical Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.107.175301">https://doi.org/10.1103/PhysRevLett.107.175301</a>
  chicago: Mark, Manfred, Elmar Haller, Katharina Lauber, Johann G Danzl, Andrew Daley,
    and Hanns Nägerl. “Precision Measurements on a Tunable Mott Insulator of Ultracold
    Atoms.” <i>Physical Review Letters</i>. American Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevLett.107.175301">https://doi.org/10.1103/PhysRevLett.107.175301</a>.
  ieee: M. Mark, E. Haller, K. Lauber, J. G. Danzl, A. Daley, and H. Nägerl, “Precision
    measurements on a tunable Mott insulator of ultracold atoms,” <i>Physical Review
    Letters</i>, vol. 107, no. 17. American Physical Society, 2011.
  ista: Mark M, Haller E, Lauber K, Danzl JG, Daley A, Nägerl H. 2011. Precision measurements
    on a tunable Mott insulator of ultracold atoms. Physical Review Letters. 107(17).
  mla: Mark, Manfred, et al. “Precision Measurements on a Tunable Mott Insulator of
    Ultracold Atoms.” <i>Physical Review Letters</i>, vol. 107, no. 17, American Physical
    Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevLett.107.175301">10.1103/PhysRevLett.107.175301</a>.
  short: M. Mark, E. Haller, K. Lauber, J.G. Danzl, A. Daley, H. Nägerl, Physical
    Review Letters 107 (2011).
date_created: 2018-12-11T11:49:54Z
date_published: 2011-10-18T00:00:00Z
date_updated: 2021-01-12T06:47:56Z
day: '18'
doi: 10.1103/PhysRevLett.107.175301
extern: '1'
external_id:
  arxiv:
  - '1107.1803'
intvolume: '       107'
issue: '17'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1107.1803
month: '10'
oa: 1
oa_version: Preprint
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6337'
status: public
title: Precision measurements on a tunable Mott insulator of ultracold atoms
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 107
year: '2011'
...
---
_id: '1054'
abstract:
- lang: eng
  text: We investigate local three-body correlations for bosonic particles in three
    dimensions and one dimension as a function of the interaction strength. The three-body
    correlation function g(3) is determined by measuring the three-body recombination
    rate in an ultracold gas of Cs atoms. In three dimensions, we measure the dependence
    of g(3) on the gas parameter in a BEC, finding good agreement with the theoretical
    prediction accounting for beyond-mean-field effects. In one dimension, we observe
    a reduction of g( 3) by several orders of magnitude upon increasing interactions
    from the weakly interacting BEC to the strongly interacting Tonks-Girardeau regime,
    in good agreement with predictions from the Lieb-Liniger model for all strengths
    of interaction.
acknowledgement: We thank R. Grimm for generous support. We gratefully acknowledge
  funding by the Austrian Science Fund (FWF) within Project No. I153-N16 and within
  the framework of the European Science Foundation (ESF) EuroQUASAR collective research
  project QuDeGPM. G. P. acknowledges funding from the EU through NAME-QUAM and AQUTE.
article_processing_charge: No
arxiv: 1
author:
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Mahmoud
  full_name: Rabie, Mahmoud
  last_name: Rabie
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Russell
  full_name: Hart, Russell
  last_name: Hart
- first_name: Katharina
  full_name: Lauber, Katharina
  last_name: Lauber
- first_name: Guido
  full_name: Pupillo, Guido
  last_name: Pupillo
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
citation:
  ama: Haller E, Rabie M, Mark M, et al. Three-body correlation functions and recombination
    rates for bosons in three dimensions and one dimension. <i>Physical Review Letters</i>.
    2011;107(23). doi:<a href="https://doi.org/10.1103/PhysRevLett.107.230404">10.1103/PhysRevLett.107.230404</a>
  apa: Haller, E., Rabie, M., Mark, M., Danzl, J. G., Hart, R., Lauber, K., … Nägerl,
    H. (2011). Three-body correlation functions and recombination rates for bosons
    in three dimensions and one dimension. <i>Physical Review Letters</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.107.230404">https://doi.org/10.1103/PhysRevLett.107.230404</a>
  chicago: Haller, Elmar, Mahmoud Rabie, Manfred Mark, Johann G Danzl, Russell Hart,
    Katharina Lauber, Guido Pupillo, and Hanns Nägerl. “Three-Body Correlation Functions
    and Recombination Rates for Bosons in Three Dimensions and One Dimension.” <i>Physical
    Review Letters</i>. American Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevLett.107.230404">https://doi.org/10.1103/PhysRevLett.107.230404</a>.
  ieee: E. Haller <i>et al.</i>, “Three-body correlation functions and recombination
    rates for bosons in three dimensions and one dimension,” <i>Physical Review Letters</i>,
    vol. 107, no. 23. American Physical Society, 2011.
  ista: Haller E, Rabie M, Mark M, Danzl JG, Hart R, Lauber K, Pupillo G, Nägerl H.
    2011. Three-body correlation functions and recombination rates for bosons in three
    dimensions and one dimension. Physical Review Letters. 107(23).
  mla: Haller, Elmar, et al. “Three-Body Correlation Functions and Recombination Rates
    for Bosons in Three Dimensions and One Dimension.” <i>Physical Review Letters</i>,
    vol. 107, no. 23, American Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevLett.107.230404">10.1103/PhysRevLett.107.230404</a>.
  short: E. Haller, M. Rabie, M. Mark, J.G. Danzl, R. Hart, K. Lauber, G. Pupillo,
    H. Nägerl, Physical Review Letters 107 (2011).
date_created: 2018-12-11T11:49:54Z
date_published: 2011-12-02T00:00:00Z
date_updated: 2021-01-12T06:47:57Z
day: '02'
doi: 10.1103/PhysRevLett.107.230404
extern: '1'
external_id:
  arxiv:
  - '1107.4516'
intvolume: '       107'
issue: '23'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1107.4516
month: '12'
oa: 1
oa_version: Preprint
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6335'
status: public
title: Three-body correlation functions and recombination rates for bosons in three
  dimensions and one dimension
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 107
year: '2011'
...
---
_id: '9483'
abstract:
- lang: eng
  text: Imprinted genes are expressed primarily or exclusively from either the maternal
    or paternal allele, a phenomenon that occurs in flowering plants and mammals.
    Flowering plant imprinted gene expression has been described primarily in endosperm,
    a terminal nutritive tissue consumed by the embryo during seed development or
    after germination. Imprinted expression in Arabidopsis thaliana endosperm is orchestrated
    by differences in cytosine DNA methylation between the paternal and maternal genomes
    as well as by Polycomb group proteins. Currently, only 11 imprinted A. thaliana
    genes are known. Here, we use extensive sequencing of cDNA libraries to identify
    9 paternally expressed and 34 maternally expressed imprinted genes in A. thaliana
    endosperm that are regulated by the DNA-demethylating glycosylase DEMETER, the
    DNA methyltransferase MET1, and/or the core Polycomb group protein FIE. These
    genes encode transcription factors, proteins involved in hormone signaling, components
    of the ubiquitin protein degradation pathway, regulators of histone and DNA methylation,
    and small RNA pathway proteins. We also identify maternally expressed genes that
    may be regulated by unknown mechanisms or deposited from maternal tissues. We
    did not detect any imprinted genes in the embryo. Our results show that imprinted
    gene expression is an extensive mechanistically complex phenomenon that likely
    affects multiple aspects of seed development.
article_processing_charge: No
article_type: original
author:
- first_name: Tzung-Fu
  full_name: Hsieh, Tzung-Fu
  last_name: Hsieh
- first_name: Juhyun
  full_name: Shin, Juhyun
  last_name: Shin
- first_name: Rie
  full_name: Uzawa, Rie
  last_name: Uzawa
- first_name: Pedro
  full_name: Silva, Pedro
  last_name: Silva
- first_name: Stephanie
  full_name: Cohen, Stephanie
  last_name: Cohen
- first_name: Matthew J.
  full_name: Bauer, Matthew J.
  last_name: Bauer
- first_name: Meryl
  full_name: Hashimoto, Meryl
  last_name: Hashimoto
- first_name: Ryan C.
  full_name: Kirkbride, Ryan C.
  last_name: Kirkbride
- first_name: John J.
  full_name: Harada, John J.
  last_name: Harada
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
- first_name: Robert L.
  full_name: Fischer, Robert L.
  last_name: Fischer
citation:
  ama: Hsieh T-F, Shin J, Uzawa R, et al. Regulation of imprinted gene expression
    in Arabidopsis endosperm. <i>Proceedings of the National Academy of Sciences</i>.
    2011;108(5):1755-1762. doi:<a href="https://doi.org/10.1073/pnas.1019273108">10.1073/pnas.1019273108</a>
  apa: Hsieh, T.-F., Shin, J., Uzawa, R., Silva, P., Cohen, S., Bauer, M. J., … Fischer,
    R. L. (2011). Regulation of imprinted gene expression in Arabidopsis endosperm.
    <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences.
    <a href="https://doi.org/10.1073/pnas.1019273108">https://doi.org/10.1073/pnas.1019273108</a>
  chicago: Hsieh, Tzung-Fu, Juhyun Shin, Rie Uzawa, Pedro Silva, Stephanie Cohen,
    Matthew J. Bauer, Meryl Hashimoto, et al. “Regulation of Imprinted Gene Expression
    in Arabidopsis Endosperm.” <i>Proceedings of the National Academy of Sciences</i>.
    National Academy of Sciences, 2011. <a href="https://doi.org/10.1073/pnas.1019273108">https://doi.org/10.1073/pnas.1019273108</a>.
  ieee: T.-F. Hsieh <i>et al.</i>, “Regulation of imprinted gene expression in Arabidopsis
    endosperm,” <i>Proceedings of the National Academy of Sciences</i>, vol. 108,
    no. 5. National Academy of Sciences, pp. 1755–1762, 2011.
  ista: Hsieh T-F, Shin J, Uzawa R, Silva P, Cohen S, Bauer MJ, Hashimoto M, Kirkbride
    RC, Harada JJ, Zilberman D, Fischer RL. 2011. Regulation of imprinted gene expression
    in Arabidopsis endosperm. Proceedings of the National Academy of Sciences. 108(5),
    1755–1762.
  mla: Hsieh, Tzung-Fu, et al. “Regulation of Imprinted Gene Expression in Arabidopsis
    Endosperm.” <i>Proceedings of the National Academy of Sciences</i>, vol. 108,
    no. 5, National Academy of Sciences, 2011, pp. 1755–62, doi:<a href="https://doi.org/10.1073/pnas.1019273108">10.1073/pnas.1019273108</a>.
  short: T.-F. Hsieh, J. Shin, R. Uzawa, P. Silva, S. Cohen, M.J. Bauer, M. Hashimoto,
    R.C. Kirkbride, J.J. Harada, D. Zilberman, R.L. Fischer, Proceedings of the National
    Academy of Sciences 108 (2011) 1755–1762.
date_created: 2021-06-07T07:40:38Z
date_published: 2011-02-01T00:00:00Z
date_updated: 2021-12-14T08:33:49Z
day: '01'
department:
- _id: DaZi
doi: 10.1073/pnas.1019273108
extern: '1'
external_id:
  pmid:
  - '21257907'
intvolume: '       108'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1073/pnas.1019273108
month: '02'
oa: 1
oa_version: Published Version
page: 1755-1762
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Regulation of imprinted gene expression in Arabidopsis endosperm
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 108
year: '2011'
...
---
_id: '9522'
abstract:
- lang: eng
  text: Little is known about chromatin remodeling events immediately after fertilization.
    A recent report by Autran et al. (2011) in Cell now shows that chromatin regulatory
    pathways that silence transposable elements are responsible for global delayed
    activation of gene expression in the early Arabidopsis embryo.
article_processing_charge: No
author:
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
citation:
  ama: Zilberman D. <i>Balancing Parental Contributions in Plant Embryonic Gene Activation</i>.
    Vol 20. Elsevier; 2011:735-736. doi:<a href="https://doi.org/10.1016/j.devcel.2011.05.018">10.1016/j.devcel.2011.05.018</a>
  apa: Zilberman, D. (2011). <i>Balancing parental contributions in plant embryonic
    gene activation</i>. <i>Developmental Cell</i> (Vol. 20, pp. 735–736). Elsevier.
    <a href="https://doi.org/10.1016/j.devcel.2011.05.018">https://doi.org/10.1016/j.devcel.2011.05.018</a>
  chicago: Zilberman, Daniel. <i>Balancing Parental Contributions in Plant Embryonic
    Gene Activation</i>. <i>Developmental Cell</i>. Vol. 20. Elsevier, 2011. <a href="https://doi.org/10.1016/j.devcel.2011.05.018">https://doi.org/10.1016/j.devcel.2011.05.018</a>.
  ieee: D. Zilberman, <i>Balancing parental contributions in plant embryonic gene
    activation</i>, vol. 20, no. 6. Elsevier, 2011, pp. 735–736.
  ista: Zilberman D. 2011. Balancing parental contributions in plant embryonic gene
    activation, Elsevier,p.
  mla: Zilberman, Daniel. “Balancing Parental Contributions in Plant Embryonic Gene
    Activation.” <i>Developmental Cell</i>, vol. 20, no. 6, Elsevier, 2011, pp. 735–36,
    doi:<a href="https://doi.org/10.1016/j.devcel.2011.05.018">10.1016/j.devcel.2011.05.018</a>.
  short: D. Zilberman, Balancing Parental Contributions in Plant Embryonic Gene Activation,
    Elsevier, 2011.
date_created: 2021-06-08T06:23:39Z
date_published: 2011-06-14T00:00:00Z
date_updated: 2021-12-14T08:34:37Z
day: '14'
department:
- _id: DaZi
doi: 10.1016/j.devcel.2011.05.018
extern: '1'
external_id:
  pmid:
  - '21664571'
intvolume: '        20'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.devcel.2011.05.018
month: '06'
oa: 1
oa_version: Published Version
page: 735-736
pmid: 1
publication: Developmental Cell
publication_identifier:
  eissn:
  - 1878-1551
  issn:
  - 1534-5807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Balancing parental contributions in plant embryonic gene activation
type: other_academic_publication
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 20
year: '2011'
...
---
_id: '9648'
abstract:
- lang: eng
  text: In this paper, we establish a correspondence between the incremental algorithm
    for computing AT-models [8,9] and the one for computing persistent homology [6,14,15].
    We also present a decremental algorithm for computing AT-models that allows to
    extend the persistence computation to a wider setting. Finally, we show how to
    combine incremental and decremental techniques for persistent homology computation.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Rocio
  full_name: Gonzalez-Diaz, Rocio
  last_name: Gonzalez-Diaz
- first_name: Adrian
  full_name: Ion, Adrian
  id: 29F89302-F248-11E8-B48F-1D18A9856A87
  last_name: Ion
- first_name: Maria Jose
  full_name: Jimenez, Maria Jose
  last_name: Jimenez
- first_name: Regina
  full_name: Poyatos, Regina
  last_name: Poyatos
citation:
  ama: 'Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. Incremental-decremental algorithm
    for computing AT-models and persistent homology. In: <i>Computer Analysis of Images
    and Patterns</i>. Vol 6854. Springer Nature; 2011:286-293. doi:<a href="https://doi.org/10.1007/978-3-642-23672-3_35">10.1007/978-3-642-23672-3_35</a>'
  apa: 'Gonzalez-Diaz, R., Ion, A., Jimenez, M. J., &#38; Poyatos, R. (2011). Incremental-decremental
    algorithm for computing AT-models and persistent homology. In <i>Computer Analysis
    of Images and Patterns</i> (Vol. 6854, pp. 286–293). Seville, Spain: Springer
    Nature. <a href="https://doi.org/10.1007/978-3-642-23672-3_35">https://doi.org/10.1007/978-3-642-23672-3_35</a>'
  chicago: Gonzalez-Diaz, Rocio, Adrian Ion, Maria Jose Jimenez, and Regina Poyatos.
    “Incremental-Decremental Algorithm for Computing AT-Models and Persistent Homology.”
    In <i>Computer Analysis of Images and Patterns</i>, 6854:286–93. Springer Nature,
    2011. <a href="https://doi.org/10.1007/978-3-642-23672-3_35">https://doi.org/10.1007/978-3-642-23672-3_35</a>.
  ieee: R. Gonzalez-Diaz, A. Ion, M. J. Jimenez, and R. Poyatos, “Incremental-decremental
    algorithm for computing AT-models and persistent homology,” in <i>Computer Analysis
    of Images and Patterns</i>, Seville, Spain, 2011, vol. 6854, pp. 286–293.
  ista: 'Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. 2011. Incremental-decremental
    algorithm for computing AT-models and persistent homology. Computer Analysis of
    Images and Patterns. CAIP: International Conference on Computer Analysis of Images
    and Patterns, LNCS, vol. 6854, 286–293.'
  mla: Gonzalez-Diaz, Rocio, et al. “Incremental-Decremental Algorithm for Computing
    AT-Models and Persistent Homology.” <i>Computer Analysis of Images and Patterns</i>,
    vol. 6854, Springer Nature, 2011, pp. 286–93, doi:<a href="https://doi.org/10.1007/978-3-642-23672-3_35">10.1007/978-3-642-23672-3_35</a>.
  short: R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis
    of Images and Patterns, Springer Nature, 2011, pp. 286–293.
conference:
  end_date: 2011-08-31
  location: Seville, Spain
  name: 'CAIP: International Conference on Computer Analysis of Images and Patterns'
  start_date: 2011-08-29
date_created: 2021-07-11T22:01:19Z
date_published: 2011-08-01T00:00:00Z
date_updated: 2021-08-12T13:53:17Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-642-23672-3_35
intvolume: '      6854'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://hdl.handle.net/11441/30766
month: '08'
oa: 1
oa_version: Published Version
page: 286-293
publication: Computer Analysis of Images and Patterns
publication_identifier:
  eissn:
  - '16113349'
  isbn:
  - '9783642236716'
  issn:
  - '03029743'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Incremental-decremental algorithm for computing AT-models and persistent homology
type: conference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 6854
year: '2011'
...
---
_id: '967'
abstract:
- lang: eng
  text: Motivated by recent experiments on the material Ba3NiSb 2O9, we consider a
    spin-one quantum antiferromagnet on a triangular lattice with the Heisenberg bilinear
    and biquadratic exchange interactions and a single-ion anisotropy. Using a fermionic
    &quot;triplon&quot; representation for spins, we study the phase diagram within
    mean-field theory. In addition to a fully gapped spin-liquid ground state, we
    find a state where one gapless triplon mode with a Fermi surface coexists with
    d+id topological pairing of the other triplons. Despite the existence of a Fermi
    surface, this ground state has fully gapped bulk spin excitations. Such a state
    has linear in-temperature specific heat and constant in-plane spin susceptibility,
    with an unusually high Wilson ratio.
author:
- first_name: Maksym
  full_name: Maksym Serbyn
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Todadri
  full_name: Senthil, Todadri S
  last_name: Senthil
- first_name: Patrick
  full_name: Lee, Patrick
  last_name: Lee
citation:
  ama: Serbyn M, Senthil T, Lee P. Exotic S=1 spin-liquid state with fermionic excitations
    on the triangular lattice. <i>Physical Review B - Condensed Matter and Materials
    Physics</i>. 2011;84(18). doi:<a href="https://doi.org/10.1103/PhysRevB.84.180403">10.1103/PhysRevB.84.180403</a>
  apa: Serbyn, M., Senthil, T., &#38; Lee, P. (2011). Exotic S=1 spin-liquid state
    with fermionic excitations on the triangular lattice. <i>Physical Review B - Condensed
    Matter and Materials Physics</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevB.84.180403">https://doi.org/10.1103/PhysRevB.84.180403</a>
  chicago: Serbyn, Maksym, Todadri Senthil, and Patrick Lee. “Exotic S=1 Spin-Liquid
    State with Fermionic Excitations on the Triangular Lattice.” <i>Physical Review
    B - Condensed Matter and Materials Physics</i>. American Physical Society, 2011.
    <a href="https://doi.org/10.1103/PhysRevB.84.180403">https://doi.org/10.1103/PhysRevB.84.180403</a>.
  ieee: M. Serbyn, T. Senthil, and P. Lee, “Exotic S=1 spin-liquid state with fermionic
    excitations on the triangular lattice,” <i>Physical Review B - Condensed Matter
    and Materials Physics</i>, vol. 84, no. 18. American Physical Society, 2011.
  ista: Serbyn M, Senthil T, Lee P. 2011. Exotic S=1 spin-liquid state with fermionic
    excitations on the triangular lattice. Physical Review B - Condensed Matter and
    Materials Physics. 84(18).
  mla: Serbyn, Maksym, et al. “Exotic S=1 Spin-Liquid State with Fermionic Excitations
    on the Triangular Lattice.” <i>Physical Review B - Condensed Matter and Materials
    Physics</i>, vol. 84, no. 18, American Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevB.84.180403">10.1103/PhysRevB.84.180403</a>.
  short: M. Serbyn, T. Senthil, P. Lee, Physical Review B - Condensed Matter and Materials
    Physics 84 (2011).
date_created: 2018-12-11T11:49:27Z
date_published: 2011-11-03T00:00:00Z
date_updated: 2021-01-12T08:22:18Z
day: '03'
doi: 10.1103/PhysRevB.84.180403
extern: 1
intvolume: '        84'
issue: '18'
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1108.3070
month: '11'
oa: 1
publication: Physical Review B - Condensed Matter and Materials Physics
publication_status: published
publisher: American Physical Society
publist_id: '6432'
quality_controlled: 0
status: public
title: Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice
type: journal_article
volume: 84
year: '2011'
...
---
_id: '968'
abstract:
- lang: eng
  text: A Reply to the Comment by Andrei Sergeev, M. Reizer, and V. Mitin.
author:
- first_name: Maksym
  full_name: Maksym Serbyn
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Mikhail
  full_name: Skvortsov, Mikhail A
  last_name: Skvortsov
- first_name: Andrei
  full_name: Varlamov, Andrei A
  last_name: Varlamov
- first_name: Victor
  full_name: Galitski, Victor M
  last_name: Galitski
citation:
  ama: 'Serbyn M, Skvortsov M, Varlamov A, Galitski V. Serbyn et al. Reply: <i>Physical
    Review Letters</i>. 2011;106(13). doi:<a href="https://doi.org/10.1103/PhysRevLett.106.139702">10.1103/PhysRevLett.106.139702</a>'
  apa: 'Serbyn, M., Skvortsov, M., Varlamov, A., &#38; Galitski, V. (2011). Serbyn
    et al. Reply: <i>Physical Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.106.139702">https://doi.org/10.1103/PhysRevLett.106.139702</a>'
  chicago: Serbyn, Maksym, Mikhail Skvortsov, Andrei Varlamov, and Victor Galitski.
    “Serbyn et Al. Reply:” <i>Physical Review Letters</i>. American Physical Society,
    2011. <a href="https://doi.org/10.1103/PhysRevLett.106.139702">https://doi.org/10.1103/PhysRevLett.106.139702</a>.
  ieee: M. Serbyn, M. Skvortsov, A. Varlamov, and V. Galitski, “Serbyn et al. Reply:,”
    <i>Physical Review Letters</i>, vol. 106, no. 13. American Physical Society, 2011.
  ista: 'Serbyn M, Skvortsov M, Varlamov A, Galitski V. 2011. Serbyn et al. Reply:
    Physical Review Letters. 106(13).'
  mla: Serbyn, Maksym, et al. “Serbyn et Al. Reply:” <i>Physical Review Letters</i>,
    vol. 106, no. 13, American Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevLett.106.139702">10.1103/PhysRevLett.106.139702</a>.
  short: M. Serbyn, M. Skvortsov, A. Varlamov, V. Galitski, Physical Review Letters
    106 (2011).
date_created: 2018-12-11T11:49:27Z
date_published: 2011-04-01T00:00:00Z
date_updated: 2021-01-12T08:22:19Z
day: '01'
doi: 10.1103/PhysRevLett.106.139702
extern: 1
intvolume: '       106'
issue: '13'
month: '04'
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6433'
quality_controlled: 0
status: public
title: 'Serbyn et al. Reply:'
type: journal_article
volume: 106
year: '2011'
...
---
_id: '969'
abstract:
- lang: eng
  text: We investigate the isotope effect on the London penetration depth of a superconductor
    which measures n S/m*, the ratio of superfluid density to effective mass. We use
    a simplified model of electrons weakly coupled to a single phonon frequency ω
    E, but assume that the energy gap Δ does not have any isotope effect. Nevertheless,
    we find an isotope effect for n S/m* which is significant if Δ is sufficiently
    large that it becomes comparable to ω E, a regime of interest to high-T c cuprate
    superconductors and possibly other families of unconventional superconductors
    with relatively high T c. Our model is too simple to describe the cuprates and
    it gives the wrong sign of the isotope effect when compared with experiment, but
    it is a proof of principle that the isotope effect exists for n S/m* in materials
    where the pairing gap and T c are not of phonon origin and have no isotope effect.
author:
- first_name: Maksym
  full_name: Maksym Serbyn
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Patrick
  full_name: Lee, Patrick
  last_name: Lee
citation:
  ama: Serbyn M, Lee P. Isotope effect on the superfluid density in conventional and
    high-temperature superconductors. <i>Physical Review B - Condensed Matter and
    Materials Physics</i>. 2011;83(2). doi:<a href="https://doi.org/10.1103/PhysRevB.83.024506">10.1103/PhysRevB.83.024506</a>
  apa: Serbyn, M., &#38; Lee, P. (2011). Isotope effect on the superfluid density
    in conventional and high-temperature superconductors. <i>Physical Review B - Condensed
    Matter and Materials Physics</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevB.83.024506">https://doi.org/10.1103/PhysRevB.83.024506</a>
  chicago: Serbyn, Maksym, and Patrick Lee. “Isotope Effect on the Superfluid Density
    in Conventional and High-Temperature Superconductors.” <i>Physical Review B -
    Condensed Matter and Materials Physics</i>. American Physical Society, 2011. <a
    href="https://doi.org/10.1103/PhysRevB.83.024506">https://doi.org/10.1103/PhysRevB.83.024506</a>.
  ieee: M. Serbyn and P. Lee, “Isotope effect on the superfluid density in conventional
    and high-temperature superconductors,” <i>Physical Review B - Condensed Matter
    and Materials Physics</i>, vol. 83, no. 2. American Physical Society, 2011.
  ista: Serbyn M, Lee P. 2011. Isotope effect on the superfluid density in conventional
    and high-temperature superconductors. Physical Review B - Condensed Matter and
    Materials Physics. 83(2).
  mla: Serbyn, Maksym, and Patrick Lee. “Isotope Effect on the Superfluid Density
    in Conventional and High-Temperature Superconductors.” <i>Physical Review B -
    Condensed Matter and Materials Physics</i>, vol. 83, no. 2, American Physical
    Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevB.83.024506">10.1103/PhysRevB.83.024506</a>.
  short: M. Serbyn, P. Lee, Physical Review B - Condensed Matter and Materials Physics
    83 (2011).
date_created: 2018-12-11T11:49:28Z
date_published: 2011-01-19T00:00:00Z
date_updated: 2021-01-12T08:22:19Z
day: '19'
doi: 10.1103/PhysRevB.83.024506
extern: 1
intvolume: '        83'
issue: '2'
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1009.2429
month: '01'
oa: 1
publication: Physical Review B - Condensed Matter and Materials Physics
publication_status: published
publisher: American Physical Society
publist_id: '6434'
quality_controlled: 0
status: public
title: Isotope effect on the superfluid density in conventional and high-temperature
  superconductors
type: journal_article
volume: 83
year: '2011'
...
---
_id: '9762'
abstract:
- lang: eng
  text: Defining population structure and genetic diversity levels is of the utmost
    importance for developing efficient conservation strategies. Overfishing has caused
    mean annual catches of the European spiny lobster (Palinurus elephas) to decrease
    alarmingly along its distribution area. In this context, there is a need for comprehensive
    studies to evaluate the genetic health of the exploited populations. The present
    work is based on a set of 10 nuclear markers amplified in 331 individuals from
    10 different localities covering most of P. elephas distribution area. Samples
    from Atlantic and Mediterranean basins showed small but significant differences,
    indicating that P. elephas populations do not behave as a single panmictic unit
    but form two partially-overlapping groups. Despite intense overfishing, our dataset
    did not recover a recent bottleneck signal, and showed a large and stable historical
    effective size instead. This result could be accounted for by specific life history
    traits (reproduction and longevity) and the limitations of molecular markers in
    covering very recent timescales for non temporal samples. Our study emphasizes
    the necessity of integrating information on effective population sizes and life
    history parameters when evaluating population connectivity levels from genetic
    data.
article_processing_charge: No
author:
- first_name: Ferran
  full_name: Palero, Ferran
  id: 3F0E2A22-F248-11E8-B48F-1D18A9856A87
  last_name: Palero
  orcid: 0000-0002-0343-8329
- first_name: Pere
  full_name: Abello, Pere
  last_name: Abello
- first_name: Enrique
  full_name: Macpherson, Enrique
  last_name: Macpherson
- first_name: Mark
  full_name: Beaumont, Mark
  last_name: Beaumont
- first_name: Marta
  full_name: Pascual, Marta
  last_name: Pascual
citation:
  ama: 'Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. Data from: Effect
    of oceanographic barriers and overfishing on the population genetic structure
    of the European spiny lobster (Palinurus elephas). 2011. doi:<a href="https://doi.org/10.5061/dryad.299h8">10.5061/dryad.299h8</a>'
  apa: 'Palero, F., Abello, P., Macpherson, E., Beaumont, M., &#38; Pascual, M. (2011).
    Data from: Effect of oceanographic barriers and overfishing on the population
    genetic structure of the European spiny lobster (Palinurus elephas). IST Austria.
    <a href="https://doi.org/10.5061/dryad.299h8">https://doi.org/10.5061/dryad.299h8</a>'
  chicago: 'Palero, Ferran, Pere Abello, Enrique Macpherson, Mark Beaumont, and Marta
    Pascual. “Data from: Effect of Oceanographic Barriers and Overfishing on the Population
    Genetic Structure of the European Spiny Lobster (Palinurus Elephas).” IST Austria,
    2011. <a href="https://doi.org/10.5061/dryad.299h8">https://doi.org/10.5061/dryad.299h8</a>.'
  ieee: 'F. Palero, P. Abello, E. Macpherson, M. Beaumont, and M. Pascual, “Data from:
    Effect of oceanographic barriers and overfishing on the population genetic structure
    of the European spiny lobster (Palinurus elephas).” IST Austria, 2011.'
  ista: 'Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. 2011. Data from:
    Effect of oceanographic barriers and overfishing on the population genetic structure
    of the European spiny lobster (Palinurus elephas), IST Austria, <a href="https://doi.org/10.5061/dryad.299h8">10.5061/dryad.299h8</a>.'
  mla: 'Palero, Ferran, et al. <i>Data from: Effect of Oceanographic Barriers and
    Overfishing on the Population Genetic Structure of the European Spiny Lobster
    (Palinurus Elephas)</i>. IST Austria, 2011, doi:<a href="https://doi.org/10.5061/dryad.299h8">10.5061/dryad.299h8</a>.'
  short: F. Palero, P. Abello, E. Macpherson, M. Beaumont, M. Pascual, (2011).
date_created: 2021-08-02T07:11:19Z
date_published: 2011-05-12T00:00:00Z
date_updated: 2023-02-23T11:25:25Z
day: '12'
department:
- _id: NiBa
doi: 10.5061/dryad.299h8
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.299h8
month: '05'
oa: 1
oa_version: Published Version
publisher: IST Austria
related_material:
  record:
  - id: '3395'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: Effect of oceanographic barriers and overfishing on the population
  genetic structure of the European spiny lobster (Palinurus elephas)'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2011'
...
---
_id: '9943'
abstract:
- lang: eng
  text: Segmentation is the process of partitioning digital images into meaningful
    regions. The analysis of biological high content images often requires segmentation
    as a first step. We propose ilastik as an easy-to-use tool which allows the user
    without expertise in image processing to perform segmentation and classification
    in a unified way. ilastik learns from labels provided by the user through a convenient
    mouse interface. Based on these labels, ilastik infers a problem specific segmentation.
    A random forest classifier is used in the learning step, in which each pixel's
    neighborhood is characterized by a set of generic (nonlinear) features. ilastik
    supports up to three spatial plus one spectral dimension and makes use of all
    dimensions in the feature calculation. ilastik provides realtime feedback that
    enables the user to interactively refine the segmentation result and hence further
    fine-tune the classifier. An uncertainty measure guides the user to ambiguous
    regions in the images. Real time performance is achieved by multi-threading which
    fully exploits the capabilities of modern multi-core machines. Once a classifier
    has been trained on a set of representative images, it can be exported and used
    to automatically process a very large number of images (e.g. using the CellProfiler
    pipeline). ilastik is an open source project and released under the BSD license
    at www.ilastik.org.
article_processing_charge: No
author:
- first_name: Christoph M
  full_name: Sommer, Christoph M
  id: 4DF26D8C-F248-11E8-B48F-1D18A9856A87
  last_name: Sommer
  orcid: 0000-0003-1216-9105
- first_name: Christoph
  full_name: Straehle, Christoph
  last_name: Straehle
- first_name: Ullrich
  full_name: Köthe, Ullrich
  last_name: Köthe
- first_name: Fred A.
  full_name: Hamprecht, Fred A.
  last_name: Hamprecht
citation:
  ama: 'Sommer CM, Straehle C, Köthe U, Hamprecht FA. Ilastik: Interactive learning
    and segmentation toolkit. In: <i>2011 IEEE International Symposium on Biomedical
    Imaging: From Nano to Micro</i>. Institute of Electrical and Electronics Engineers;
    2011. doi:<a href="https://doi.org/10.1109/isbi.2011.5872394">10.1109/isbi.2011.5872394</a>'
  apa: 'Sommer, C. M., Straehle, C., Köthe, U., &#38; Hamprecht, F. A. (2011). Ilastik:
    Interactive learning and segmentation toolkit. In <i>2011 IEEE International Symposium
    on Biomedical Imaging: from Nano to Micro</i>. Chicago, Illinois, USA: Institute
    of Electrical and Electronics Engineers. <a href="https://doi.org/10.1109/isbi.2011.5872394">https://doi.org/10.1109/isbi.2011.5872394</a>'
  chicago: 'Sommer, Christoph M, Christoph Straehle, Ullrich Köthe, and Fred A. Hamprecht.
    “Ilastik: Interactive Learning and Segmentation Toolkit.” In <i>2011 IEEE International
    Symposium on Biomedical Imaging: From Nano to Micro</i>. Institute of Electrical
    and Electronics Engineers, 2011. <a href="https://doi.org/10.1109/isbi.2011.5872394">https://doi.org/10.1109/isbi.2011.5872394</a>.'
  ieee: 'C. M. Sommer, C. Straehle, U. Köthe, and F. A. Hamprecht, “Ilastik: Interactive
    learning and segmentation toolkit,” in <i>2011 IEEE International Symposium on
    Biomedical Imaging: from Nano to Micro</i>, Chicago, Illinois, USA, 2011.'
  ista: 'Sommer CM, Straehle C, Köthe U, Hamprecht FA. 2011. Ilastik: Interactive
    learning and segmentation toolkit. 2011 IEEE International Symposium on Biomedical
    Imaging: from Nano to Micro. ISBI: International Symposium on Biomedical Imaging.'
  mla: 'Sommer, Christoph M., et al. “Ilastik: Interactive Learning and Segmentation
    Toolkit.” <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano
    to Micro</i>, Institute of Electrical and Electronics Engineers, 2011, doi:<a
    href="https://doi.org/10.1109/isbi.2011.5872394">10.1109/isbi.2011.5872394</a>.'
  short: 'C.M. Sommer, C. Straehle, U. Köthe, F.A. Hamprecht, in:, 2011 IEEE International
    Symposium on Biomedical Imaging: From Nano to Micro, Institute of Electrical and
    Electronics Engineers, 2011.'
conference:
  end_date: 2011-04-02
  location: Chicago, Illinois, USA
  name: 'ISBI: International Symposium on Biomedical Imaging'
  start_date: 2011-03-30
date_created: 2021-08-19T11:49:58Z
date_published: 2011-06-09T00:00:00Z
date_updated: 2023-02-23T14:13:38Z
day: '09'
department:
- _id: Bio
doi: 10.1109/isbi.2011.5872394
extern: '1'
keyword:
- image segmentation
- biomedical imaging
- three dimensional displays
- neurons
- retina
- observers
- image color analysis
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.researchgate.net/publication/224241106_Ilastik_Interactive_learning_and_segmentation_toolkit
month: '06'
oa: 1
oa_version: Preprint
publication: '2011 IEEE International Symposium on Biomedical Imaging: from Nano to
  Micro'
publication_identifier:
  eissn:
  - 1945-8452
  isbn:
  - 978-1-4244-4127-3
  issn:
  - 1945-7928
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
status: public
title: 'Ilastik: Interactive learning and segmentation toolkit'
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2011'
...
---
_id: '10907'
abstract:
- lang: eng
  text: This paper presents a method to create a model of an articulated object using
    the planar motion in an initialization video. The model consists of rigid parts
    connected by points of articulation. The rigid parts are described by the positions
    of salient feature-points tracked throughout the video. Following a filtering
    step that identifies points that belong to different objects, rigid parts are
    found by a grouping process in a graph pyramid. Valid articulation points are
    selected by verifying multiple hypotheses for each pair of parts.
acknowledgement: This work has been partially supported by the Austrian Science Fund
  under grants S9103-N13 and P18716-N13.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Nicole M.
  full_name: Artner, Nicole M.
  last_name: Artner
- first_name: Adrian
  full_name: Ion, Adrian
  id: 29F89302-F248-11E8-B48F-1D18A9856A87
  last_name: Ion
- first_name: Walter G.
  full_name: Kropatsch, Walter G.
  last_name: Kropatsch
citation:
  ama: 'Artner NM, Ion A, Kropatsch WG. Spatio-temporal extraction of articulated
    models in a graph pyramid. In: Jiang X, Ferrer M, Torsello A, eds. <i>Graph-Based
    Representations in Pattern Recognition</i>. Vol 6658. LNIP. Berlin, Heidelberg:
    Springer; 2011:215-224. doi:<a href="https://doi.org/10.1007/978-3-642-20844-7_22">10.1007/978-3-642-20844-7_22</a>'
  apa: 'Artner, N. M., Ion, A., &#38; Kropatsch, W. G. (2011). Spatio-temporal extraction
    of articulated models in a graph pyramid. In X. Jiang, M. Ferrer, &#38; A. Torsello
    (Eds.), <i>Graph-Based Representations in Pattern Recognition</i> (Vol. 6658,
    pp. 215–224). Berlin, Heidelberg: Springer. <a href="https://doi.org/10.1007/978-3-642-20844-7_22">https://doi.org/10.1007/978-3-642-20844-7_22</a>'
  chicago: 'Artner, Nicole M., Adrian Ion, and Walter G. Kropatsch. “Spatio-Temporal
    Extraction of Articulated Models in a Graph Pyramid.” In <i>Graph-Based Representations
    in Pattern Recognition</i>, edited by Xiaoyi Jiang, Miquel Ferrer, and Andrea
    Torsello, 6658:215–24. LNIP. Berlin, Heidelberg: Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-20844-7_22">https://doi.org/10.1007/978-3-642-20844-7_22</a>.'
  ieee: N. M. Artner, A. Ion, and W. G. Kropatsch, “Spatio-temporal extraction of
    articulated models in a graph pyramid,” in <i>Graph-Based Representations in Pattern
    Recognition</i>, Münster, Germany, 2011, vol. 6658, pp. 215–224.
  ista: 'Artner NM, Ion A, Kropatsch WG. 2011. Spatio-temporal extraction of articulated
    models in a graph pyramid. Graph-Based Representations in Pattern Recognition.
    GbRPR: Graph-based Representations in Pattern RecognitionLNIP, LNCS, vol. 6658,
    215–224.'
  mla: Artner, Nicole M., et al. “Spatio-Temporal Extraction of Articulated Models
    in a Graph Pyramid.” <i>Graph-Based Representations in Pattern Recognition</i>,
    edited by Xiaoyi Jiang et al., vol. 6658, Springer, 2011, pp. 215–24, doi:<a href="https://doi.org/10.1007/978-3-642-20844-7_22">10.1007/978-3-642-20844-7_22</a>.
  short: N.M. Artner, A. Ion, W.G. Kropatsch, in:, X. Jiang, M. Ferrer, A. Torsello
    (Eds.), Graph-Based Representations in Pattern Recognition, Springer, Berlin,
    Heidelberg, 2011, pp. 215–224.
conference:
  end_date: 2011-05-20
  location: Münster, Germany
  name: 'GbRPR: Graph-based Representations in Pattern Recognition'
  start_date: 2011-05-18
date_created: 2022-03-21T08:08:35Z
date_published: 2011-06-01T00:00:00Z
date_updated: 2023-09-05T14:10:15Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-642-20844-7_22
editor:
- first_name: Xiaoyi
  full_name: Jiang, Xiaoyi
  last_name: Jiang
- first_name: Miquel
  full_name: Ferrer, Miquel
  last_name: Ferrer
- first_name: Andrea
  full_name: Torsello, Andrea
  last_name: Torsello
intvolume: '      6658'
language:
- iso: eng
month: '06'
oa_version: None
page: 215-224
place: Berlin, Heidelberg
publication: Graph-Based Representations in Pattern Recognition
publication_identifier:
  eisbn:
  - '9783642208447'
  eissn:
  - 1611-3349
  isbn:
  - '9783642208430'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
series_title: LNIP
status: public
title: Spatio-temporal extraction of articulated models in a graph pyramid
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 6658
year: '2011'
...
---
_id: '11094'
abstract:
- lang: eng
  text: Nuclear pore complexes (NPCs) assemble at the end of mitosis during nuclear
    envelope (NE) reformation and into an intact NE as cells progress through interphase.
    Although recent studies have shown that NPC formation occurs by two different
    molecular mechanisms at two distinct cell cycle stages, little is known about
    the molecular players that mediate the fusion of the outer and inner nuclear membranes
    to form pores. In this paper, we provide evidence that the transmembrane nucleoporin
    (Nup), POM121, but not the Nup107–160 complex, is present at new pore assembly
    sites at a time that coincides with inner nuclear membrane (INM) and outer nuclear
    membrane (ONM) fusion. Overexpression of POM121 resulted in juxtaposition of the
    INM and ONM. Additionally, Sun1, an INM protein that is known to interact with
    the cytoskeleton, was specifically required for interphase assembly and localized
    with POM121 at forming pores. We propose a model in which POM121 and Sun1 interact
    transiently to promote early steps of interphase NPC assembly.
article_processing_charge: No
article_type: original
author:
- first_name: Jessica A.
  full_name: Talamas, Jessica A.
  last_name: Talamas
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Talamas JA, Hetzer M. POM121 and Sun1 play a role in early steps of interphase
    NPC assembly. <i>Journal of Cell Biology</i>. 2011;194(1):27-37. doi:<a href="https://doi.org/10.1083/jcb.201012154">10.1083/jcb.201012154</a>
  apa: Talamas, J. A., &#38; Hetzer, M. (2011). POM121 and Sun1 play a role in early
    steps of interphase NPC assembly. <i>Journal of Cell Biology</i>. Rockefeller
    University Press. <a href="https://doi.org/10.1083/jcb.201012154">https://doi.org/10.1083/jcb.201012154</a>
  chicago: Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in
    Early Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>. Rockefeller
    University Press, 2011. <a href="https://doi.org/10.1083/jcb.201012154">https://doi.org/10.1083/jcb.201012154</a>.
  ieee: J. A. Talamas and M. Hetzer, “POM121 and Sun1 play a role in early steps of
    interphase NPC assembly,” <i>Journal of Cell Biology</i>, vol. 194, no. 1. Rockefeller
    University Press, pp. 27–37, 2011.
  ista: Talamas JA, Hetzer M. 2011. POM121 and Sun1 play a role in early steps of
    interphase NPC assembly. Journal of Cell Biology. 194(1), 27–37.
  mla: Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early
    Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>, vol. 194, no.
    1, Rockefeller University Press, 2011, pp. 27–37, doi:<a href="https://doi.org/10.1083/jcb.201012154">10.1083/jcb.201012154</a>.
  short: J.A. Talamas, M. Hetzer, Journal of Cell Biology 194 (2011) 27–37.
date_created: 2022-04-07T07:52:18Z
date_published: 2011-07-04T00:00:00Z
date_updated: 2022-07-18T08:53:46Z
day: '04'
doi: 10.1083/jcb.201012154
extern: '1'
external_id:
  pmid:
  - '21727197'
intvolume: '       194'
issue: '1'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1083/jcb.201012154
month: '07'
oa: 1
oa_version: Published Version
page: 27-37
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: POM121 and Sun1 play a role in early steps of interphase NPC assembly
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 194
year: '2011'
...
---
_id: '11095'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
- first_name: Giacomo
  full_name: Cavalli, Giacomo
  last_name: Cavalli
citation:
  ama: Hetzer M, Cavalli G. Editorial overview. <i>Current Opinion in Cell Biology</i>.
    2011;23(3):255-257. doi:<a href="https://doi.org/10.1016/j.ceb.2011.04.013">10.1016/j.ceb.2011.04.013</a>
  apa: Hetzer, M., &#38; Cavalli, G. (2011). Editorial overview. <i>Current Opinion
    in Cell Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.ceb.2011.04.013">https://doi.org/10.1016/j.ceb.2011.04.013</a>
  chicago: Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion
    in Cell Biology</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.ceb.2011.04.013">https://doi.org/10.1016/j.ceb.2011.04.013</a>.
  ieee: M. Hetzer and G. Cavalli, “Editorial overview,” <i>Current Opinion in Cell
    Biology</i>, vol. 23, no. 3. Elsevier, pp. 255–257, 2011.
  ista: Hetzer M, Cavalli G. 2011. Editorial overview. Current Opinion in Cell Biology.
    23(3), 255–257.
  mla: Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion
    in Cell Biology</i>, vol. 23, no. 3, Elsevier, 2011, pp. 255–57, doi:<a href="https://doi.org/10.1016/j.ceb.2011.04.013">10.1016/j.ceb.2011.04.013</a>.
  short: M. Hetzer, G. Cavalli, Current Opinion in Cell Biology 23 (2011) 255–257.
date_created: 2022-04-07T07:52:27Z
date_published: 2011-06-01T00:00:00Z
date_updated: 2022-07-18T08:39:40Z
day: '01'
doi: 10.1016/j.ceb.2011.04.013
extern: '1'
external_id:
  pmid:
  - '21592757'
intvolume: '        23'
issue: '3'
keyword:
- Cell Biology
language:
- iso: eng
month: '06'
oa_version: None
page: 255-257
pmid: 1
publication: Current Opinion in Cell Biology
publication_identifier:
  issn:
  - 0955-0674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Editorial overview
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 23
year: '2011'
...
