---
_id: '2922'
author:
- first_name: Sara
  full_name: Vicente, Sara
  last_name: Vicente
- first_name: Vladimir
  full_name: Vladimir Kolmogorov
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
- first_name: Carsten
  full_name: Rother, Carsten
  last_name: Rother
citation:
  ama: 'Vicente S, Kolmogorov V, Rother C. Graph-cut Based Image Segmentation with
    Connectivity Priors. In: Blake A, Kohli P, Rother C, eds. <i>Markov Random Fields
    for Vision and Image Processing</i>. Massachusetts Institute of Technology Press;
    2011.'
  apa: Vicente, S., Kolmogorov, V., &#38; Rother, C. (2011). Graph-cut Based Image
    Segmentation with Connectivity Priors. In A. Blake, P. Kohli, &#38; C. Rother
    (Eds.), <i>Markov Random Fields for Vision and Image Processing</i>. Massachusetts
    Institute of Technology Press.
  chicago: Vicente, Sara, Vladimir Kolmogorov, and Carsten Rother. “Graph-Cut Based
    Image Segmentation with Connectivity Priors.” In <i>Markov Random Fields for Vision
    and Image Processing</i>, edited by Andrew Blake, Pushmeet Kohli, and Carsten
    Rother. Massachusetts Institute of Technology Press, 2011.
  ieee: S. Vicente, V. Kolmogorov, and C. Rother, “Graph-cut Based Image Segmentation
    with Connectivity Priors,” in <i>Markov Random Fields for Vision and Image Processing</i>,
    A. Blake, P. Kohli, and C. Rother, Eds. Massachusetts Institute of Technology
    Press, 2011.
  ista: 'Vicente S, Kolmogorov V, Rother C. 2011.Graph-cut Based Image Segmentation
    with Connectivity Priors. In: Markov Random Fields for Vision and Image Processing.
    .'
  mla: Vicente, Sara, et al. “Graph-Cut Based Image Segmentation with Connectivity
    Priors.” <i>Markov Random Fields for Vision and Image Processing</i>, edited by
    Andrew Blake et al., Massachusetts Institute of Technology Press, 2011.
  short: S. Vicente, V. Kolmogorov, C. Rother, in:, A. Blake, P. Kohli, C. Rother
    (Eds.), Markov Random Fields for Vision and Image Processing, Massachusetts Institute
    of Technology Press, 2011.
date_created: 2018-12-11T12:00:21Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:00:43Z
day: '01'
editor:
- first_name: Andrew
  full_name: Blake, Andrew
  last_name: Blake
- first_name: Pushmeet
  full_name: Kohli, Pushmeet
  last_name: Kohli
- first_name: Carsten
  full_name: Rother, Carsten
  last_name: Rother
extern: 1
month: '01'
publication: Markov Random Fields for Vision and Image Processing
publication_status: published
publisher: Massachusetts Institute of Technology Press
publist_id: '3815'
quality_controlled: 0
status: public
title: Graph-cut Based Image Segmentation with Connectivity Priors
type: book_chapter
year: '2011'
...
---
_id: '2923'
author:
- first_name: M Pawan
  full_name: Kumar, M Pawan
  last_name: Kumar
- first_name: Vladimir
  full_name: Vladimir Kolmogorov
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
- first_name: Philip
  full_name: Torr, Philip H
  last_name: Torr
citation:
  ama: 'Kumar MP, Kolmogorov V, Torr P. Analyzing Convex Relaxations for MAP Estimation.
    In: Blake A, Kohli P, Rother C, eds. <i>Markov Random Fields for Vision and Image
    Processing</i>. Massachusetts Institute of Technology Press; 2011.'
  apa: Kumar, M. P., Kolmogorov, V., &#38; Torr, P. (2011). Analyzing Convex Relaxations
    for MAP Estimation. In A. Blake, P. Kohli, &#38; C. Rother (Eds.), <i>Markov Random
    Fields for Vision and Image Processing</i>. Massachusetts Institute of Technology
    Press.
  chicago: Kumar, M Pawan, Vladimir Kolmogorov, and Philip Torr. “Analyzing Convex
    Relaxations for MAP Estimation.” In <i>Markov Random Fields for Vision and Image
    Processing</i>, edited by Andrew Blake, Pushmeet Kohli, and Carsten Rother. Massachusetts
    Institute of Technology Press, 2011.
  ieee: M. P. Kumar, V. Kolmogorov, and P. Torr, “Analyzing Convex Relaxations for
    MAP Estimation,” in <i>Markov Random Fields for Vision and Image Processing</i>,
    A. Blake, P. Kohli, and C. Rother, Eds. Massachusetts Institute of Technology
    Press, 2011.
  ista: 'Kumar MP, Kolmogorov V, Torr P. 2011.Analyzing Convex Relaxations for MAP
    Estimation. In: Markov Random Fields for Vision and Image Processing. .'
  mla: Kumar, M. Pawan, et al. “Analyzing Convex Relaxations for MAP Estimation.”
    <i>Markov Random Fields for Vision and Image Processing</i>, edited by Andrew
    Blake et al., Massachusetts Institute of Technology Press, 2011.
  short: M.P. Kumar, V. Kolmogorov, P. Torr, in:, A. Blake, P. Kohli, C. Rother (Eds.),
    Markov Random Fields for Vision and Image Processing, Massachusetts Institute
    of Technology Press, 2011.
date_created: 2018-12-11T12:00:21Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:00:43Z
day: '01'
editor:
- first_name: Andrew
  full_name: Blake, Andrew
  last_name: Blake
- first_name: Pushmeet
  full_name: Kohli, Pushmeet
  last_name: Kohli
- first_name: Carsten
  full_name: Rother, Carsten
  last_name: Rother
extern: 1
month: '01'
publication: Markov Random Fields for Vision and Image Processing
publication_status: published
publisher: Massachusetts Institute of Technology Press
publist_id: '3814'
quality_controlled: 0
status: public
title: Analyzing Convex Relaxations for MAP Estimation
type: book_chapter
year: '2011'
...
---
_id: '2924'
author:
- first_name: Antonio
  full_name: Criminisi, Antonio
  last_name: Criminisi
- first_name: Geoffrey
  full_name: Cross, Geoffrey
  last_name: Cross
- first_name: Andrew
  full_name: Blake, Andrew
  last_name: Blake
- first_name: Vladimir
  full_name: Vladimir Kolmogorov
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
citation:
  ama: 'Criminisi A, Cross G, Blake A, Kolmogorov V. Bilayer Segmentation of Video.
    In: Blake A, Kohli P, Rother C, eds. <i>Markov Random Fields for Vision and Image
    Processing</i>. Massachusetts Institute of Technology Press; 2011.'
  apa: Criminisi, A., Cross, G., Blake, A., &#38; Kolmogorov, V. (2011). Bilayer Segmentation
    of Video. In A. Blake, P. Kohli, &#38; C. Rother (Eds.), <i>Markov Random Fields
    for Vision and Image Processing</i>. Massachusetts Institute of Technology Press.
  chicago: Criminisi, Antonio, Geoffrey Cross, Andrew Blake, and Vladimir Kolmogorov.
    “Bilayer Segmentation of Video.” In <i>Markov Random Fields for Vision and Image
    Processing</i>, edited by Andrew Blake, Pushmeet Kohli, and Carsten Rother. Massachusetts
    Institute of Technology Press, 2011.
  ieee: A. Criminisi, G. Cross, A. Blake, and V. Kolmogorov, “Bilayer Segmentation
    of Video,” in <i>Markov Random Fields for Vision and Image Processing</i>, A.
    Blake, P. Kohli, and C. Rother, Eds. Massachusetts Institute of Technology Press,
    2011.
  ista: 'Criminisi A, Cross G, Blake A, Kolmogorov V. 2011.Bilayer Segmentation of
    Video. In: Markov Random Fields for Vision and Image Processing. .'
  mla: Criminisi, Antonio, et al. “Bilayer Segmentation of Video.” <i>Markov Random
    Fields for Vision and Image Processing</i>, edited by Andrew Blake et al., Massachusetts
    Institute of Technology Press, 2011.
  short: A. Criminisi, G. Cross, A. Blake, V. Kolmogorov, in:, A. Blake, P. Kohli,
    C. Rother (Eds.), Markov Random Fields for Vision and Image Processing, Massachusetts
    Institute of Technology Press, 2011.
date_created: 2018-12-11T12:00:22Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:00:43Z
day: '01'
editor:
- first_name: Andrew
  full_name: Blake, Andrew
  last_name: Blake
- first_name: Pushmeet
  full_name: Kohli, Pushmeet
  last_name: Kohli
- first_name: Carsten
  full_name: Rother, Carsten
  last_name: Rother
extern: 1
month: '01'
publication: Markov Random Fields for Vision and Image Processing
publication_status: published
publisher: Massachusetts Institute of Technology Press
publist_id: '3813'
quality_controlled: 0
status: public
title: Bilayer Segmentation of Video
type: book_chapter
year: '2011'
...
---
_id: '2925'
author:
- first_name: Carsten
  full_name: Rother, Carsten
  last_name: Rother
- first_name: Vladimir
  full_name: Vladimir Kolmogorov
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
- first_name: Yuri
  full_name: Boykov, Yuri
  last_name: Boykov
- first_name: Andrew
  full_name: Blake, Andrew
  last_name: Blake
citation:
  ama: 'Rother C, Kolmogorov V, Boykov Y, Blake A. Interactive Foreground Extraction
    using graph cut. In: Blake A, Kohli P, Rother C, eds. <i>Markov Random Fields
    for Vision and Image Processing</i>. Massachusetts Institute of Technology Press;
    2011.'
  apa: Rother, C., Kolmogorov, V., Boykov, Y., &#38; Blake, A. (2011). Interactive
    Foreground Extraction using graph cut. In A. Blake, P. Kohli, &#38; C. Rother
    (Eds.), <i>Markov Random Fields for Vision and Image Processing</i>. Massachusetts
    Institute of Technology Press.
  chicago: Rother, Carsten, Vladimir Kolmogorov, Yuri Boykov, and Andrew Blake. “Interactive
    Foreground Extraction Using Graph Cut.” In <i>Markov Random Fields for Vision
    and Image Processing</i>, edited by Andrew Blake, Pushmeet Kohli, and Carsten
    Rother. Massachusetts Institute of Technology Press, 2011.
  ieee: C. Rother, V. Kolmogorov, Y. Boykov, and A. Blake, “Interactive Foreground
    Extraction using graph cut,” in <i>Markov Random Fields for Vision and Image Processing</i>,
    A. Blake, P. Kohli, and C. Rother, Eds. Massachusetts Institute of Technology
    Press, 2011.
  ista: 'Rother C, Kolmogorov V, Boykov Y, Blake A. 2011.Interactive Foreground Extraction
    using graph cut. In: Markov Random Fields for Vision and Image Processing. .'
  mla: Rother, Carsten, et al. “Interactive Foreground Extraction Using Graph Cut.”
    <i>Markov Random Fields for Vision and Image Processing</i>, edited by Andrew
    Blake et al., Massachusetts Institute of Technology Press, 2011.
  short: C. Rother, V. Kolmogorov, Y. Boykov, A. Blake, in:, A. Blake, P. Kohli, C.
    Rother (Eds.), Markov Random Fields for Vision and Image Processing, Massachusetts
    Institute of Technology Press, 2011.
date_created: 2018-12-11T12:00:22Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:00:44Z
day: '01'
editor:
- first_name: Andrew
  full_name: Blake, Andrew
  last_name: Blake
- first_name: Pushmeet
  full_name: Kohli, Pushmeet
  last_name: Kohli
- first_name: Carsten
  full_name: Rother, Carsten
  last_name: Rother
extern: 1
month: '01'
publication: Markov Random Fields for Vision and Image Processing
publication_status: published
publisher: Massachusetts Institute of Technology Press
publist_id: '3812'
quality_controlled: 0
status: public
title: Interactive Foreground Extraction using graph cut
type: book_chapter
year: '2011'
...
---
_id: '2935'
author:
- first_name: Yuri
  full_name: Boykov, Yuri
  last_name: Boykov
- first_name: Vladimir
  full_name: Vladimir Kolmogorov
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
citation:
  ama: 'Boykov Y, Kolmogorov V. Basic graph cut algorithms. In: Blake A, Kohli P,
    Rother C, eds. <i>Markov Random Fields for Vision and Image Processing</i>. Massachusetts
    Institute of Technology Press; 2011:31-50.'
  apa: Boykov, Y., &#38; Kolmogorov, V. (2011). Basic graph cut algorithms. In A.
    Blake, P. Kohli, &#38; C. Rother (Eds.), <i>Markov Random Fields for Vision and
    Image Processing</i> (pp. 31–50). Massachusetts Institute of Technology Press.
  chicago: Boykov, Yuri, and Vladimir Kolmogorov. “Basic Graph Cut Algorithms.” In
    <i>Markov Random Fields for Vision and Image Processing</i>, edited by Andrew
    Blake, Pushmeet Kohli, and Carsten Rother, 31–50. Massachusetts Institute of Technology
    Press, 2011.
  ieee: Y. Boykov and V. Kolmogorov, “Basic graph cut algorithms,” in <i>Markov Random
    Fields for Vision and Image Processing</i>, A. Blake, P. Kohli, and C. Rother,
    Eds. Massachusetts Institute of Technology Press, 2011, pp. 31–50.
  ista: 'Boykov Y, Kolmogorov V. 2011.Basic graph cut algorithms. In: Markov Random
    Fields for Vision and Image Processing. , 31–50.'
  mla: Boykov, Yuri, and Vladimir Kolmogorov. “Basic Graph Cut Algorithms.” <i>Markov
    Random Fields for Vision and Image Processing</i>, edited by Andrew Blake et al.,
    Massachusetts Institute of Technology Press, 2011, pp. 31–50.
  short: Y. Boykov, V. Kolmogorov, in:, A. Blake, P. Kohli, C. Rother (Eds.), Markov
    Random Fields for Vision and Image Processing, Massachusetts Institute of Technology
    Press, 2011, pp. 31–50.
date_created: 2018-12-11T12:00:26Z
date_published: 2011-07-22T00:00:00Z
date_updated: 2021-01-12T07:39:53Z
day: '22'
editor:
- first_name: Andrew
  full_name: Blake, Andrew
  last_name: Blake
- first_name: Pushmeet
  full_name: Kohli, Pushmeet
  last_name: Kohli
- first_name: Carsten
  full_name: Rother, Carsten
  last_name: Rother
extern: 1
month: '07'
page: 31 - 50
publication: Markov Random Fields for Vision and Image Processing
publication_status: published
publisher: Massachusetts Institute of Technology Press
publist_id: '3801'
quality_controlled: 0
status: public
title: Basic graph cut algorithms
type: book_chapter
year: '2011'
...
---
_id: '2960'
abstract:
- lang: eng
  text: Traditional statistical methods for the confidentiality protection for statistical
    databases do not scale well to deal with GWAS (genome-wide association studies)
    databases and external information on them. The more recent concept of differential
    privacy, introduced by the cryptographic community, is an approach which provides
    a rigorous definition of privacy with meaningful privacy guarantees in the presence
    of arbitrary external information. Building on such notions, we propose new methods
    to release aggregate GWAS data without compromising an individual's privacy. We
    present methods for releasing differentially private minor allele frequencies,
    chi-square statistics and p-values. We compare these approaches on simulated data
    and on a GWAS study of canine hair length involving 685 dogs. We also propose
    a privacy-preserving method for finding genome-wide associations based on a differentially
    private approach to penalized logistic regression.
author:
- first_name: Stephen
  full_name: Fienberg, Stephen E
  last_name: Fienberg
- first_name: Aleksandra
  full_name: Slavkovic, Aleksandra
  last_name: Slavkovic
- first_name: Caroline
  full_name: Caroline Uhler
  id: 49ADD78E-F248-11E8-B48F-1D18A9856A87
  last_name: Uhler
  orcid: 0000-0002-7008-0216
citation:
  ama: 'Fienberg S, Slavkovic A, Uhler C. Privacy Preserving GWAS Data Sharing. In:
    IEEE; 2011. doi:<a href="https://doi.org/10.1109/ICDMW.2011.140">10.1109/ICDMW.2011.140</a>'
  apa: Fienberg, S., Slavkovic, A., &#38; Uhler, C. (2011). Privacy Preserving GWAS
    Data Sharing. Presented at the Proceedings of the 11th IEEE International Conference
    on Data Mining, IEEE. <a href="https://doi.org/10.1109/ICDMW.2011.140">https://doi.org/10.1109/ICDMW.2011.140</a>
  chicago: Fienberg, Stephen, Aleksandra Slavkovic, and Caroline Uhler. “Privacy Preserving
    GWAS Data Sharing.” IEEE, 2011. <a href="https://doi.org/10.1109/ICDMW.2011.140">https://doi.org/10.1109/ICDMW.2011.140</a>.
  ieee: S. Fienberg, A. Slavkovic, and C. Uhler, “Privacy Preserving GWAS Data Sharing,”
    presented at the Proceedings of the 11th IEEE International Conference on Data
    Mining, 2011.
  ista: Fienberg S, Slavkovic A, Uhler C. 2011. Privacy Preserving GWAS Data Sharing.
    Proceedings of the 11th IEEE International Conference on Data Mining.
  mla: Fienberg, Stephen, et al. <i>Privacy Preserving GWAS Data Sharing</i>. IEEE,
    2011, doi:<a href="https://doi.org/10.1109/ICDMW.2011.140">10.1109/ICDMW.2011.140</a>.
  short: S. Fienberg, A. Slavkovic, C. Uhler, in:, IEEE, 2011.
conference:
  name: Proceedings of the 11th IEEE International Conference on Data Mining
date_created: 2018-12-11T12:00:34Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:40:05Z
day: '01'
doi: 10.1109/ICDMW.2011.140
extern: 1
month: '01'
publication_status: published
publisher: IEEE
publist_id: '3766'
quality_controlled: 0
status: public
title: Privacy Preserving GWAS Data Sharing
type: conference
year: '2011'
...
---
_id: '2961'
abstract:
- lang: eng
  text: |-
    Rapid research progress in genotyping techniques have allowed large genome-wide association studies. Existing methods often focus on determining associations between single loci and a specic phenotype. However, a particular phenotype is usually the result of complex relationships between multiple loci and the environment. In this paper, we describe a two-stage method for detecting epistasis by combining the traditionally used single-locus search with a search for multiway interactions. Our method is based on an extended version of Fisher's exact test. To
    perform this test, a Markov chain is constructed on the space of multidimensional contingency tables using the elements of a Markov basis as moves. We test our method on simulated data and compare it to a two-stage logistic regression method and to a fully Bayesian method, showing that we are able to detect the interacting loci when other methods fail to do so. Finally, we apply our method to a genome-wide data set consisting of 685 dogs and identify epistasis associated with canine hair length for four pairs of single nucleotide polymorphisms (SNPs).
acknowledgement: Anna-Sapfo Malaspinas is supported by a Janggen-Poehn Fellowship.
  Caroline Uhler is supported by an International Fulbright Science and Technology
  Fellowship.
author:
- first_name: Anna
  full_name: 'Malaspinas, Anna-Sapfo '
  last_name: Malaspinas
- first_name: Caroline
  full_name: Caroline Uhler
  id: 49ADD78E-F248-11E8-B48F-1D18A9856A87
  last_name: Uhler
  orcid: 0000-0002-7008-0216
citation:
  ama: Malaspinas A, Uhler C. Detecting epistasis via Markov bases. <i>Journal of
    Algebraic Statistics</i>. 2011;2(1):36-53. doi:<a href="http://dx.doi.org/10.18409/jas.v2i1.27">http://dx.doi.org/10.18409/jas.v2i1.27</a>
  apa: Malaspinas, A., &#38; Uhler, C. (2011). Detecting epistasis via Markov bases.
    <i>Journal of Algebraic Statistics</i>. Public Knowledge Project. <a href="http://dx.doi.org/10.18409/jas.v2i1.27">http://dx.doi.org/10.18409/jas.v2i1.27</a>
  chicago: Malaspinas, Anna, and Caroline Uhler. “Detecting Epistasis via Markov Bases.”
    <i>Journal of Algebraic Statistics</i>. Public Knowledge Project, 2011. <a href="http://dx.doi.org/10.18409/jas.v2i1.27">http://dx.doi.org/10.18409/jas.v2i1.27</a>.
  ieee: A. Malaspinas and C. Uhler, “Detecting epistasis via Markov bases,” <i>Journal
    of Algebraic Statistics</i>, vol. 2, no. 1. Public Knowledge Project, pp. 36–53,
    2011.
  ista: Malaspinas A, Uhler C. 2011. Detecting epistasis via Markov bases. Journal
    of Algebraic Statistics. 2(1), 36–53.
  mla: Malaspinas, Anna, and Caroline Uhler. “Detecting Epistasis via Markov Bases.”
    <i>Journal of Algebraic Statistics</i>, vol. 2, no. 1, Public Knowledge Project,
    2011, pp. 36–53, doi:<a href="http://dx.doi.org/10.18409/jas.v2i1.27">http://dx.doi.org/10.18409/jas.v2i1.27</a>.
  short: A. Malaspinas, C. Uhler, Journal of Algebraic Statistics 2 (2011) 36–53.
date_created: 2018-12-11T12:00:34Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:40:05Z
day: '01'
doi: http://dx.doi.org/10.18409/jas.v2i1.27
extern: 1
intvolume: '         2'
issue: '1'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1006.4929
month: '01'
oa: 1
page: 36 - 53
publication: Journal of Algebraic Statistics
publication_status: published
publisher: Public Knowledge Project
publist_id: '3764'
quality_controlled: 0
status: public
title: Detecting epistasis via Markov bases
type: journal_article
volume: 2
year: '2011'
...
---
_id: '2975'
abstract:
- lang: eng
  text: "Zero-knowledge proofs of knowledge (ZK-PoK) for discrete logarithms and related
    problems are indispensable for practical cryptographic protocols. Recently, Camenisch,
    Kiayias, and Yung provided a specification language (the CKY-language) for such
    protocols which allows for a modular design and protocol analysis: for every zero-knowledge
    proof specified in this language, protocol designers are ensured that there exists
    an efficient protocol which indeed proves the specified statement.\n\nHowever,
    the protocols resulting from their compilation techniques only satisfy the classical
    notion of ZK-PoK, which is not retained are when they used as building blocks
    for higher-level applications or composed with other protocols.\nThis problem
    can be tackled by moving to the Universal Composability (UC) framework, which
    guarantees retention of security when composing protocols in arbitrary ways.  \nWhile
    there exist generic transformations from $\\Sigma$-protocols to UC-secure protocols,
    these transformation are often too inefficient for practice.\n \nIn this paper
    we introduce a specification language akin to the CKY-language and a compiler
    such that the resulting protocols are UC-secure and efficient. \nTo this end,
    we propose an extension of the UC-framework addressing the \nissue that UC-secure
    zero-knowledge proofs are by definition proofs of knowledge, and state a special
    composition theorem which allows one to use the weaker -- but more efficient and
    often sufficient -- notion of proofs of membership in the UC-framework.  \nWe
    believe that our contributions enable the design of practically efficient protocols
    that are UC-secure and thus themselves can be used as building blocks."
acknowledgement: This work was in part funded by the Swiss Hasler Foundation, and
  the EU FP7 grants 216483 and 216499, as well as by the NSF grant CNS-0716690.
alternative_title:
- LNCS
author:
- first_name: Jan
  full_name: Camenisch, Jan
  last_name: Camenisch
- first_name: Stephan
  full_name: Stephan Krenn
  id: 329FCCF0-F248-11E8-B48F-1D18A9856A87
  last_name: Krenn
  orcid: 0000-0003-2835-9093
- first_name: Victor
  full_name: Shoup, Victor
  last_name: Shoup
citation:
  ama: 'Camenisch J, Krenn S, Shoup V. A Framework for Practical Universally Composable
    Zero-Knowledge Protocols. In: Lee D, Wang X, eds. Vol 7073. Springer; 2011:449-467.
    doi:<a href="https://doi.org/10.1007/978-3-642-25385-0">10.1007/978-3-642-25385-0</a>'
  apa: 'Camenisch, J., Krenn, S., &#38; Shoup, V. (2011). A Framework for Practical
    Universally Composable Zero-Knowledge Protocols. In D. Lee &#38; X. Wang (Eds.)
    (Vol. 7073, pp. 449–467). Presented at the ASIACRYPT: Theory and Application of
    Cryptology and Information Security, Springer. <a href="https://doi.org/10.1007/978-3-642-25385-0">https://doi.org/10.1007/978-3-642-25385-0</a>'
  chicago: Camenisch, Jan, Stephan Krenn, and Victor Shoup. “A Framework for Practical
    Universally Composable Zero-Knowledge Protocols.” edited by Dong Lee and Xiaoyun
    Wang, 7073:449–67. Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-25385-0">https://doi.org/10.1007/978-3-642-25385-0</a>.
  ieee: 'J. Camenisch, S. Krenn, and V. Shoup, “A Framework for Practical Universally
    Composable Zero-Knowledge Protocols,” presented at the ASIACRYPT: Theory and Application
    of Cryptology and Information Security, 2011, vol. 7073, pp. 449–467.'
  ista: 'Camenisch J, Krenn S, Shoup V. 2011. A Framework for Practical Universally
    Composable Zero-Knowledge Protocols. ASIACRYPT: Theory and Application of Cryptology
    and Information Security, LNCS, vol. 7073, 449–467.'
  mla: Camenisch, Jan, et al. <i>A Framework for Practical Universally Composable
    Zero-Knowledge Protocols</i>. Edited by Dong Lee and Xiaoyun Wang, vol. 7073,
    Springer, 2011, pp. 449–67, doi:<a href="https://doi.org/10.1007/978-3-642-25385-0">10.1007/978-3-642-25385-0</a>.
  short: J. Camenisch, S. Krenn, V. Shoup, in:, D. Lee, X. Wang (Eds.), Springer,
    2011, pp. 449–467.
conference:
  name: 'ASIACRYPT: Theory and Application of Cryptology and Information Security'
date_created: 2018-12-11T12:00:39Z
date_published: 2011-11-21T00:00:00Z
date_updated: 2021-01-12T07:40:11Z
day: '21'
doi: 10.1007/978-3-642-25385-0
editor:
- first_name: Dong
  full_name: Lee, Dong Hoon
  last_name: Lee
- first_name: Xiaoyun
  full_name: Wang, Xiaoyun
  last_name: Wang
extern: 1
intvolume: '      7073'
main_file_link:
- open_access: '0'
  url: http://eprint.iacr.org/2011/228.pdf
month: '11'
page: 449 - 467
publication_status: published
publisher: Springer
publist_id: '3728'
quality_controlled: 0
status: public
title: A Framework for Practical Universally Composable Zero-Knowledge Protocols
type: conference
volume: 7073
year: '2011'
...
---
_id: '2976'
abstract:
- lang: eng
  text: |-
    Side channel attacks on cryptographic systems exploit information
    gained from physical implementations rather than theoretical
    weaknesses of a scheme. In recent years, major achievements were made
    for the class of so called access-driven cache attacks. Such attacks
    exploit the leakage of the memory locations accessed by a victim
    process.

    In this paper we consider the AES block cipher and present an attack
    which is capable of recovering the full secret key in almost realtime
    for AES-128, requiring only a very limited number of observed
    encryptions. Unlike previous attacks, we do not require any
    information about the plaintext (such as its distribution, etc.).
    Moreover, for the first time, we also show how the plaintext can be
    recovered without having access to the ciphertext at all.  It is the
    first working attack on AES implementations using compressed
    tables. There, no efficient techniques to identify the beginning
    of AES rounds is known, which is the fundamental assumption underlying previous
    attacks.

    We have a fully working implementation of our attack which is able to
    recover AES keys after observing as little as 100 encryptions. It
    works against the OpenSSL 0.9.8n implementation of AES on Linux
    systems.  Our spy process does not require any special privileges
    beyond those of a standard Linux user. A contribution of probably
    independent interest is a denial of service attack on the task scheduler of
    current Linux systems (CFS), which allows one to observe (on average)
    every single memory access of a victim process.
acknowledgement: |-
  This work was in part funded by the European Community’s Seventh Framework Programme (FP7) under grant agreement no. 216499 and the Swiss Hasler Foundation.
  An extended abstract was also accepted for COSADE 2011.
author:
- first_name: David
  full_name: Gullasch, David
  last_name: Gullasch
- first_name: Endre
  full_name: Bangerter, Endre
  last_name: Bangerter
- first_name: Stephan
  full_name: Stephan Krenn
  id: 329FCCF0-F248-11E8-B48F-1D18A9856A87
  last_name: Krenn
  orcid: 0000-0003-2835-9093
citation:
  ama: 'Gullasch D, Bangerter E, Krenn S. Cache Games - Bringing Access-Based Cache
    Attacks on AES to Practice. In: IEEE; 2011:490-505. doi:<a href="https://doi.org/10.1109/SP.2011.22">10.1109/SP.2011.22</a>'
  apa: 'Gullasch, D., Bangerter, E., &#38; Krenn, S. (2011). Cache Games - Bringing
    Access-Based Cache Attacks on AES to Practice (pp. 490–505). Presented at the
    S&#38;P: IEEE Symposium on Security and Privacy, IEEE. <a href="https://doi.org/10.1109/SP.2011.22">https://doi.org/10.1109/SP.2011.22</a>'
  chicago: Gullasch, David, Endre Bangerter, and Stephan Krenn. “Cache Games - Bringing
    Access-Based Cache Attacks on AES to Practice,” 490–505. IEEE, 2011. <a href="https://doi.org/10.1109/SP.2011.22">https://doi.org/10.1109/SP.2011.22</a>.
  ieee: 'D. Gullasch, E. Bangerter, and S. Krenn, “Cache Games - Bringing Access-Based
    Cache Attacks on AES to Practice,” presented at the S&#38;P: IEEE Symposium on
    Security and Privacy, 2011, pp. 490–505.'
  ista: 'Gullasch D, Bangerter E, Krenn S. 2011. Cache Games - Bringing Access-Based
    Cache Attacks on AES to Practice. S&#38;P: IEEE Symposium on Security and Privacy,
    490–505.'
  mla: Gullasch, David, et al. <i>Cache Games - Bringing Access-Based Cache Attacks
    on AES to Practice</i>. IEEE, 2011, pp. 490–505, doi:<a href="https://doi.org/10.1109/SP.2011.22">10.1109/SP.2011.22</a>.
  short: D. Gullasch, E. Bangerter, S. Krenn, in:, IEEE, 2011, pp. 490–505.
conference:
  name: 'S&P: IEEE Symposium on Security and Privacy'
date_created: 2018-12-11T12:00:39Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:40:11Z
day: '01'
doi: 10.1109/SP.2011.22
extern: 1
main_file_link:
- open_access: '0'
  url: http://eprint.iacr.org/2010/594.pdf
month: '01'
page: 490 - 505
publication_status: published
publisher: IEEE
publist_id: '3727'
quality_controlled: 0
status: public
title: Cache Games - Bringing Access-Based Cache Attacks on AES to Practice
type: conference
year: '2011'
...
---
_id: '2977'
abstract:
- lang: eng
  text: "Cryptographic two-party protocols are used ubiquitously in\n    everyday
    life. While some of these protocols are easy to\n    understand and implement
    (e.g., key exchange or transmission of\n    encrypted data), many of them are
    much more complex (e.g.,\n    e-banking and e-voting applications, or anonymous
    authentication\n    and credential systems).\n\n    For a software engineer without
    appropriate cryptographic skills\n    the implementation of such protocols is
    often difficult, time\n    consuming and error-prone. For this reason, a number
    of compilers\n    supporting programmers have been published in recent\n    years.
    However, they are either designed for very specific\n    cryptographic primitives
    (e.g., zero-knowledge proofs of\n    knowledge), or they only offer a very low
    level of abstraction and\n    thus again demand substantial mathematical and cryptographic\n
    \   skills from the programmer. Finally, some of the existing\n    compilers do
    not produce executable code, but only metacode which\n    has to be instantiated
    with mathematical libraries, encryption\n    routines, etc. before it can actually
    be used.\n  \n    In this paper we present a cryptographically aware compiler
    which\n    is equally useful to cryptographers who want to benchmark\n    protocols
    designed on paper, and to programmers who want to\n    implement complex security
    sensitive protocols without having to\n    understand all subtleties. Our tool
    offers a high level of\n    abstraction and outputs well-structured and documented
    Java\n    code. We believe that our compiler can contribute to shortening\n    the
    development cycles of cryptographic applications and to\n    reducing their error-proneness."
acknowledgement: This work was in part funded by the European Community’s Seventh
  Framework Programme (FP7) under grant agreement no. 216499 and the Swiss Hasler
  Foundation under projects no. 09037 and 10069.
author:
- first_name: Endre
  full_name: Bangerter, Endre
  last_name: Bangerter
- first_name: Stephan
  full_name: Stephan Krenn
  id: 329FCCF0-F248-11E8-B48F-1D18A9856A87
  last_name: Krenn
  orcid: 0000-0003-2835-9093
- first_name: Martial
  full_name: Seifriz, Martial
  last_name: Seifriz
- first_name: Ulrich
  full_name: Ultes-Nitsche, Ulrich
  last_name: Ultes Nitsche
citation:
  ama: 'Bangerter E, Krenn S, Seifriz M, Ultes Nitsche U. cPLC - A Cryptographic Programming
    Language and Compiler. In: Venter H, Coetzee M, Loock M, eds. IEEE; 2011. doi:<a
    href="https://doi.org/10.1109/ISSA.2011.6027533">10.1109/ISSA.2011.6027533</a>'
  apa: 'Bangerter, E., Krenn, S., Seifriz, M., &#38; Ultes Nitsche, U. (2011). cPLC
    - A Cryptographic Programming Language and Compiler. In H. Venter, M. Coetzee,
    &#38; M. Loock (Eds.). Presented at the ISSA: Information Security South Africa,
    IEEE. <a href="https://doi.org/10.1109/ISSA.2011.6027533">https://doi.org/10.1109/ISSA.2011.6027533</a>'
  chicago: Bangerter, Endre, Stephan Krenn, Martial Seifriz, and Ulrich Ultes Nitsche.
    “CPLC - A Cryptographic Programming Language and Compiler.” edited by Hein Venter,
    Marijke Coetzee, and Marianne Loock. IEEE, 2011. <a href="https://doi.org/10.1109/ISSA.2011.6027533">https://doi.org/10.1109/ISSA.2011.6027533</a>.
  ieee: 'E. Bangerter, S. Krenn, M. Seifriz, and U. Ultes Nitsche, “cPLC - A Cryptographic
    Programming Language and Compiler,” presented at the ISSA: Information Security
    South Africa, 2011.'
  ista: 'Bangerter E, Krenn S, Seifriz M, Ultes Nitsche U. 2011. cPLC - A Cryptographic
    Programming Language and Compiler. ISSA: Information Security South Africa.'
  mla: Bangerter, Endre, et al. <i>CPLC - A Cryptographic Programming Language and
    Compiler</i>. Edited by Hein Venter et al., IEEE, 2011, doi:<a href="https://doi.org/10.1109/ISSA.2011.6027533">10.1109/ISSA.2011.6027533</a>.
  short: E. Bangerter, S. Krenn, M. Seifriz, U. Ultes Nitsche, in:, H. Venter, M.
    Coetzee, M. Loock (Eds.), IEEE, 2011.
conference:
  name: 'ISSA: Information Security South Africa'
date_created: 2018-12-11T12:00:39Z
date_published: 2011-08-01T00:00:00Z
date_updated: 2021-01-12T07:40:12Z
day: '01'
doi: 10.1109/ISSA.2011.6027533
editor:
- first_name: Hein
  full_name: Venter, Hein S.
  last_name: Venter
- first_name: Marijke
  full_name: Coetzee, Marijke
  last_name: Coetzee
- first_name: Marianne
  full_name: Loock, Marianne
  last_name: Loock
extern: 1
month: '08'
publication_status: published
publisher: IEEE
publist_id: '3726'
quality_controlled: 0
status: public
title: cPLC - A Cryptographic Programming Language and Compiler
type: conference
year: '2011'
...
---
_id: '3082'
abstract:
- lang: eng
  text: Shoot branching is one of the major determinants of plant architecture. Polar
    auxin transport in stems is necessary for the control of bud outgrowth by a dominant
    apex. Here, we show that following decapitation in pea (Pisum sativum L.), the
    axillary buds establish directional auxin export by subcellular polarization of
    PIN auxin transporters. Apical auxin application on the decapitated stem prevents
    this PIN polarization and canalization of laterally applied auxin. These results
    support a model in which the apical and lateral auxin sources compete for primary
    channels of auxin transport in the stem to control the outgrowth of axillary buds.
author:
- first_name: Jozef
  full_name: Balla, Jozef
  last_name: Balla
- first_name: Petr
  full_name: Kalousek, Petr
  last_name: Kalousek
- first_name: Vilém
  full_name: Reinöhl, Vilém
  last_name: Reinöhl
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Stanislav
  full_name: Procházka, Stanislav
  last_name: Procházka
citation:
  ama: Balla J, Kalousek P, Reinöhl V, Friml J, Procházka S. Competitive canalization
    of PIN dependent auxin flow from axillary buds controls pea bud outgrowth. <i>Plant
    Journal</i>. 2011;65(4):571-577. doi:<a href="https://doi.org/10.1111/j.1365-313X.2010.04443.x">10.1111/j.1365-313X.2010.04443.x</a>
  apa: Balla, J., Kalousek, P., Reinöhl, V., Friml, J., &#38; Procházka, S. (2011).
    Competitive canalization of PIN dependent auxin flow from axillary buds controls
    pea bud outgrowth. <i>Plant Journal</i>. Wiley-Blackwell. <a href="https://doi.org/10.1111/j.1365-313X.2010.04443.x">https://doi.org/10.1111/j.1365-313X.2010.04443.x</a>
  chicago: Balla, Jozef, Petr Kalousek, Vilém Reinöhl, Jiří Friml, and Stanislav Procházka.
    “Competitive Canalization of PIN Dependent Auxin Flow from Axillary Buds Controls
    Pea Bud Outgrowth.” <i>Plant Journal</i>. Wiley-Blackwell, 2011. <a href="https://doi.org/10.1111/j.1365-313X.2010.04443.x">https://doi.org/10.1111/j.1365-313X.2010.04443.x</a>.
  ieee: J. Balla, P. Kalousek, V. Reinöhl, J. Friml, and S. Procházka, “Competitive
    canalization of PIN dependent auxin flow from axillary buds controls pea bud outgrowth,”
    <i>Plant Journal</i>, vol. 65, no. 4. Wiley-Blackwell, pp. 571–577, 2011.
  ista: Balla J, Kalousek P, Reinöhl V, Friml J, Procházka S. 2011. Competitive canalization
    of PIN dependent auxin flow from axillary buds controls pea bud outgrowth. Plant
    Journal. 65(4), 571–577.
  mla: Balla, Jozef, et al. “Competitive Canalization of PIN Dependent Auxin Flow
    from Axillary Buds Controls Pea Bud Outgrowth.” <i>Plant Journal</i>, vol. 65,
    no. 4, Wiley-Blackwell, 2011, pp. 571–77, doi:<a href="https://doi.org/10.1111/j.1365-313X.2010.04443.x">10.1111/j.1365-313X.2010.04443.x</a>.
  short: J. Balla, P. Kalousek, V. Reinöhl, J. Friml, S. Procházka, Plant Journal
    65 (2011) 571–577.
date_created: 2018-12-11T12:01:16Z
date_published: 2011-02-01T00:00:00Z
date_updated: 2021-01-12T07:40:56Z
day: '01'
doi: 10.1111/j.1365-313X.2010.04443.x
extern: 1
intvolume: '        65'
issue: '4'
month: '02'
page: 571 - 577
publication: Plant Journal
publication_status: published
publisher: Wiley-Blackwell
publist_id: '3619'
quality_controlled: 0
status: public
title: Competitive canalization of PIN dependent auxin flow from axillary buds controls
  pea bud outgrowth
type: journal_article
volume: 65
year: '2011'
...
---
_id: '3083'
author:
- first_name: David
  full_name: Robinson, David G
  last_name: Robinson
- first_name: David
  full_name: Scheuring, David
  last_name: Scheuring
- first_name: Satoshi
  full_name: Naramoto, Satoshi
  last_name: Naramoto
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Robinson D, Scheuring D, Naramoto S, Friml J. ARF1 localizes to the golgi and
    the trans Golgi network. <i>Plant Cell</i>. 2011;23(3):846-849. doi:<a href="https://doi.org/10.1105/tpc.110.082099">10.1105/tpc.110.082099</a>
  apa: Robinson, D., Scheuring, D., Naramoto, S., &#38; Friml, J. (2011). ARF1 localizes
    to the golgi and the trans Golgi network. <i>Plant Cell</i>. American Society
    of Plant Biologists. <a href="https://doi.org/10.1105/tpc.110.082099">https://doi.org/10.1105/tpc.110.082099</a>
  chicago: Robinson, David, David Scheuring, Satoshi Naramoto, and Jiří Friml. “ARF1
    Localizes to the Golgi and the Trans Golgi Network.” <i>Plant Cell</i>. American
    Society of Plant Biologists, 2011. <a href="https://doi.org/10.1105/tpc.110.082099">https://doi.org/10.1105/tpc.110.082099</a>.
  ieee: D. Robinson, D. Scheuring, S. Naramoto, and J. Friml, “ARF1 localizes to the
    golgi and the trans Golgi network,” <i>Plant Cell</i>, vol. 23, no. 3. American
    Society of Plant Biologists, pp. 846–849, 2011.
  ista: Robinson D, Scheuring D, Naramoto S, Friml J. 2011. ARF1 localizes to the
    golgi and the trans Golgi network. Plant Cell. 23(3), 846–849.
  mla: Robinson, David, et al. “ARF1 Localizes to the Golgi and the Trans Golgi Network.”
    <i>Plant Cell</i>, vol. 23, no. 3, American Society of Plant Biologists, 2011,
    pp. 846–49, doi:<a href="https://doi.org/10.1105/tpc.110.082099">10.1105/tpc.110.082099</a>.
  short: D. Robinson, D. Scheuring, S. Naramoto, J. Friml, Plant Cell 23 (2011) 846–849.
date_created: 2018-12-11T12:01:16Z
date_published: 2011-03-01T00:00:00Z
date_updated: 2021-01-12T07:40:56Z
day: '01'
doi: 10.1105/tpc.110.082099
extern: 1
intvolume: '        23'
issue: '3'
month: '03'
page: 846 - 849
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '3617'
quality_controlled: 0
status: public
title: ARF1 localizes to the golgi and the trans Golgi network
type: journal_article
volume: 23
year: '2011'
...
---
_id: '3084'
abstract:
- lang: eng
  text: |2-

    A central question in developmental biology concerns the mechanism of generation and maintenance of cell polarity, because these processes are essential for many cellular functions and multicellular development [1]. In plants, cell polarity has an additional role in mediating directional transport of the plant hormone auxin that is crucial for multiple developmental processes [2-4]. In addition, plant cells have a complex extracellular matrix, the cell wall [5, 6], whose role in regulating cellular processes, including cell polarity, is unexplored. We have found that polar distribution of PIN auxin transporters [7] in plant cells is maintained by connections between polar domains at the plasma membrane and the cell wall. Genetic and pharmacological interference with cellulose, the major component of the cell wall, or mechanical interference with the cell wall disrupts these connections and leads to increased lateral diffusion and loss of polar distribution of PIN transporters for the phytohormone auxin. Our results reveal a plant-specific mechanism for cell polarity maintenance and provide a conceptual framework for modulating cell polarity and plant development via endogenous and environmental manipulations of the cellulose-based extracellular matrix.
author:
- first_name: Elena
  full_name: Feraru, Elena
  last_name: Feraru
- first_name: Mugurel
  full_name: Feraru, Mugurel I
  last_name: Feraru
- first_name: Jürgen
  full_name: Kleine-Vehn, Jürgen
  last_name: Kleine Vehn
- first_name: Alexandre
  full_name: Martinière, Alexandre
  last_name: Martinière
- first_name: Grégory
  full_name: Mouille, Grégory
  last_name: Mouille
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Samantha
  full_name: Vernhettes, Samantha
  last_name: Vernhettes
- first_name: John
  full_name: Runions, John
  last_name: Runions
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Feraru E, Feraru M, Kleine Vehn J, et al. PIN polarity maintenance by the cell
    wall in Arabidopsis. <i>Current Biology</i>. 2011;21(4):338-343. doi:<a href="https://doi.org/10.1016/j.cub.2011.01.036">10.1016/j.cub.2011.01.036</a>
  apa: Feraru, E., Feraru, M., Kleine Vehn, J., Martinière, A., Mouille, G., Vanneste,
    S., … Friml, J. (2011). PIN polarity maintenance by the cell wall in Arabidopsis.
    <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2011.01.036">https://doi.org/10.1016/j.cub.2011.01.036</a>
  chicago: Feraru, Elena, Mugurel Feraru, Jürgen Kleine Vehn, Alexandre Martinière,
    Grégory Mouille, Steffen Vanneste, Samantha Vernhettes, John Runions, and Jiří
    Friml. “PIN Polarity Maintenance by the Cell Wall in Arabidopsis.” <i>Current
    Biology</i>. Cell Press, 2011. <a href="https://doi.org/10.1016/j.cub.2011.01.036">https://doi.org/10.1016/j.cub.2011.01.036</a>.
  ieee: E. Feraru <i>et al.</i>, “PIN polarity maintenance by the cell wall in Arabidopsis,”
    <i>Current Biology</i>, vol. 21, no. 4. Cell Press, pp. 338–343, 2011.
  ista: Feraru E, Feraru M, Kleine Vehn J, Martinière A, Mouille G, Vanneste S, Vernhettes
    S, Runions J, Friml J. 2011. PIN polarity maintenance by the cell wall in Arabidopsis.
    Current Biology. 21(4), 338–343.
  mla: Feraru, Elena, et al. “PIN Polarity Maintenance by the Cell Wall in Arabidopsis.”
    <i>Current Biology</i>, vol. 21, no. 4, Cell Press, 2011, pp. 338–43, doi:<a href="https://doi.org/10.1016/j.cub.2011.01.036">10.1016/j.cub.2011.01.036</a>.
  short: E. Feraru, M. Feraru, J. Kleine Vehn, A. Martinière, G. Mouille, S. Vanneste,
    S. Vernhettes, J. Runions, J. Friml, Current Biology 21 (2011) 338–343.
date_created: 2018-12-11T12:01:17Z
date_published: 2011-02-22T00:00:00Z
date_updated: 2021-01-12T07:40:56Z
day: '22'
doi: 10.1016/j.cub.2011.01.036
extern: 1
intvolume: '        21'
issue: '4'
month: '02'
page: 338 - 343
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '3618'
quality_controlled: 0
status: public
title: PIN polarity maintenance by the cell wall in Arabidopsis
type: journal_article
volume: 21
year: '2011'
...
---
_id: '3085'
abstract:
- lang: eng
  text: Phototropism is an adaptation response, through which plants grow towards
    the light. It involves light perception and asymmetric distribution of the plant
    hormone auxin. Here we identify a crucial part of the mechanism for phototropism,
    revealing how light perception initiates auxin redistribution that leads to directional
    growth. We show that light polarizes the cellular localization of the auxin efflux
    carrier PIN3 in hypocotyl endodermis cells, resulting in changes in auxin distribution
    and differential growth. In the dark, high expression and activity of the PINOID
    (PID) kinase correlates with apolar targeting of PIN3 to all cell sides. Following
    illumination, light represses PINOID transcription and PIN3 is polarized specifically
    to the inner cell sides by GNOM ARF GTPase GEF (guanine nucleotide exchange factor)-dependent
    trafficking. Thus, differential trafficking at the shaded and illuminated hypocotyl
    side aligns PIN3 polarity with the light direction, and presumably redirects auxin
    flow towards the shaded side, where auxin promotes growth, causing hypocotyls
    to bend towards the light. Our results imply that PID phosphorylation-dependent
    recruitment of PIN proteins into distinct trafficking pathways is a mechanism
    to polarize auxin fluxes in response to different environmental and endogenous
    cues.
author:
- first_name: Zhaojun
  full_name: Ding, Zhaojun
  last_name: Ding
- first_name: Carlos
  full_name: Galván-Ampudia, Carlos S
  last_name: Galván Ampudia
- first_name: Emilie
  full_name: Demarsy, Emilie
  last_name: Demarsy
- first_name: Łukasz
  full_name: Łangowski, Łukasz
  last_name: Łangowski
- first_name: Jürgen
  full_name: Kleine-Vehn, Jürgen
  last_name: Kleine Vehn
- first_name: Yuanwei
  full_name: Fan, Yuanwei
  last_name: Fan
- first_name: Miyo
  full_name: Morita, Miyo T
  last_name: Morita
- first_name: Masao
  full_name: Tasaka, Masao
  last_name: Tasaka
- first_name: Christian
  full_name: Fankhauser, Christian
  last_name: Fankhauser
- first_name: Remko
  full_name: Offringa, Remko
  last_name: Offringa
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Ding Z, Galván Ampudia C, Demarsy E, et al. Light-mediated polarization of
    the PIN3 auxin transporter for the phototropic response in Arabidopsis. <i>Nature
    Cell Biology</i>. 2011;13(4):447-453. doi:<a href="https://doi.org/10.1038/ncb2208">10.1038/ncb2208</a>
  apa: Ding, Z., Galván Ampudia, C., Demarsy, E., Łangowski, Ł., Kleine Vehn, J.,
    Fan, Y., … Friml, J. (2011). Light-mediated polarization of the PIN3 auxin transporter
    for the phototropic response in Arabidopsis. <i>Nature Cell Biology</i>. Nature
    Publishing Group. <a href="https://doi.org/10.1038/ncb2208">https://doi.org/10.1038/ncb2208</a>
  chicago: Ding, Zhaojun, Carlos Galván Ampudia, Emilie Demarsy, Łukasz Łangowski,
    Jürgen Kleine Vehn, Yuanwei Fan, Miyo Morita, et al. “Light-Mediated Polarization
    of the PIN3 Auxin Transporter for the Phototropic Response in Arabidopsis.” <i>Nature
    Cell Biology</i>. Nature Publishing Group, 2011. <a href="https://doi.org/10.1038/ncb2208">https://doi.org/10.1038/ncb2208</a>.
  ieee: Z. Ding <i>et al.</i>, “Light-mediated polarization of the PIN3 auxin transporter
    for the phototropic response in Arabidopsis,” <i>Nature Cell Biology</i>, vol.
    13, no. 4. Nature Publishing Group, pp. 447–453, 2011.
  ista: Ding Z, Galván Ampudia C, Demarsy E, Łangowski Ł, Kleine Vehn J, Fan Y, Morita
    M, Tasaka M, Fankhauser C, Offringa R, Friml J. 2011. Light-mediated polarization
    of the PIN3 auxin transporter for the phototropic response in Arabidopsis. Nature
    Cell Biology. 13(4), 447–453.
  mla: Ding, Zhaojun, et al. “Light-Mediated Polarization of the PIN3 Auxin Transporter
    for the Phototropic Response in Arabidopsis.” <i>Nature Cell Biology</i>, vol.
    13, no. 4, Nature Publishing Group, 2011, pp. 447–53, doi:<a href="https://doi.org/10.1038/ncb2208">10.1038/ncb2208</a>.
  short: Z. Ding, C. Galván Ampudia, E. Demarsy, Ł. Łangowski, J. Kleine Vehn, Y.
    Fan, M. Morita, M. Tasaka, C. Fankhauser, R. Offringa, J. Friml, Nature Cell Biology
    13 (2011) 447–453.
date_created: 2018-12-11T12:01:17Z
date_published: 2011-04-01T00:00:00Z
date_updated: 2021-01-12T07:40:57Z
day: '01'
doi: 10.1038/ncb2208
extern: 1
intvolume: '        13'
issue: '4'
month: '04'
page: 447 - 453
publication: Nature Cell Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '3616'
quality_controlled: 0
status: public
title: Light-mediated polarization of the PIN3 auxin transporter for the phototropic
  response in Arabidopsis
type: journal_article
volume: 13
year: '2011'
...
---
_id: '3086'
abstract:
- lang: eng
  text: PIN-FORMED (PIN)-dependent auxin transport is essential for plant development
    and its modulation in response to the environment or endogenous signals. A NON-PHOTOTROPIC
    HYPOCOTYL 3 (NPH3)-like protein, MACCHI-BOU 4 (MAB4), has been shown to control
    PIN1 localization during organ formation, but its contribution is limited. The
    Arabidopsis genome contains four genes, MAB4/ENP/NPY1-LIKE1 (MEL1), MEL2, MEL3
    and MEL4, highly homologous to MAB4. Genetic analysis disclosed functional redundancy
    between MAB4 and MEL genes in regulation of not only organ formation but also
    of root gravitropism, revealing that NPH3 family proteins have a wider range of
    functions than previously suspected. Multiple mutants showed severe reduction
    in PIN abundance and PIN polar localization, leading to defective expression of
    an auxin responsive marker DR5rev::GFP. Pharmacological analyses and fluorescence
    recovery after photo-bleaching experiments showed that mel mutations increase
    PIN2 internalization from the plasma membrane, but affect neither intracellular
    PIN2 trafficking nor PIN2 lateral diffusion at the plasma membrane. Notably, all
    MAB4 subfamily proteins show polar localization at the cell periphery in plants.
    The MAB4 polarity was almost identical to PIN polarity. Our results suggest that
    the MAB4 subfamily proteins specifically retain PIN proteins in a polarized manner
    at the plasma membrane, thus controlling directional auxin transport and plant
    development.
author:
- first_name: Masahiko
  full_name: Furutani, Masahiko
  last_name: Furutani
- first_name: Norihito
  full_name: Sakamoto, Norihito
  last_name: Sakamoto
- first_name: Shuhei
  full_name: Yoshida, Shuhei
  last_name: Yoshida
- first_name: Takahito
  full_name: Kajiwara, Takahito
  last_name: Kajiwara
- first_name: Hélène
  full_name: Robert, Hélène S
  last_name: Robert
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Masao
  full_name: Tasaka, Masao
  last_name: Tasaka
citation:
  ama: Furutani M, Sakamoto N, Yoshida S, et al. Polar localized NPH3-like proteins
    regulate polarity and endocytosis of PIN-FORMED auxin efflux carriers. <i>Development</i>.
    2011;138(10):2069-2078. doi:<a href="https://doi.org/10.1242/dev.057745">10.1242/dev.057745</a>
  apa: Furutani, M., Sakamoto, N., Yoshida, S., Kajiwara, T., Robert, H., Friml, J.,
    &#38; Tasaka, M. (2011). Polar localized NPH3-like proteins regulate polarity
    and endocytosis of PIN-FORMED auxin efflux carriers. <i>Development</i>. Company
    of Biologists. <a href="https://doi.org/10.1242/dev.057745">https://doi.org/10.1242/dev.057745</a>
  chicago: Furutani, Masahiko, Norihito Sakamoto, Shuhei Yoshida, Takahito Kajiwara,
    Hélène Robert, Jiří Friml, and Masao Tasaka. “Polar Localized NPH3-like Proteins
    Regulate Polarity and Endocytosis of PIN-FORMED Auxin Efflux Carriers.” <i>Development</i>.
    Company of Biologists, 2011. <a href="https://doi.org/10.1242/dev.057745">https://doi.org/10.1242/dev.057745</a>.
  ieee: M. Furutani <i>et al.</i>, “Polar localized NPH3-like proteins regulate polarity
    and endocytosis of PIN-FORMED auxin efflux carriers,” <i>Development</i>, vol.
    138, no. 10. Company of Biologists, pp. 2069–2078, 2011.
  ista: Furutani M, Sakamoto N, Yoshida S, Kajiwara T, Robert H, Friml J, Tasaka M.
    2011. Polar localized NPH3-like proteins regulate polarity and endocytosis of
    PIN-FORMED auxin efflux carriers. Development. 138(10), 2069–2078.
  mla: Furutani, Masahiko, et al. “Polar Localized NPH3-like Proteins Regulate Polarity
    and Endocytosis of PIN-FORMED Auxin Efflux Carriers.” <i>Development</i>, vol.
    138, no. 10, Company of Biologists, 2011, pp. 2069–78, doi:<a href="https://doi.org/10.1242/dev.057745">10.1242/dev.057745</a>.
  short: M. Furutani, N. Sakamoto, S. Yoshida, T. Kajiwara, H. Robert, J. Friml, M.
    Tasaka, Development 138 (2011) 2069–2078.
date_created: 2018-12-11T12:01:17Z
date_published: 2011-05-01T00:00:00Z
date_updated: 2021-01-12T07:40:57Z
day: '01'
doi: 10.1242/dev.057745
extern: 1
intvolume: '       138'
issue: '10'
month: '05'
page: 2069 - 2078
publication: Development
publication_status: published
publisher: Company of Biologists
publist_id: '3615'
quality_controlled: 0
status: public
title: Polar localized NPH3-like proteins regulate polarity and endocytosis of PIN-FORMED
  auxin efflux carriers
type: journal_article
volume: 138
year: '2011'
...
---
_id: '3087'
abstract:
- lang: eng
  text: Endocytosis is a crucial mechanism by which eukaryotic cells internalize extracellular
    and plasma membrane material, and it is required for a multitude of cellular and
    developmental processes in unicellular and multicellular organisms. In animals
    and yeast, the best characterized pathway for endocytosis depends on the function
    of the vesicle coat protein clathrin. Clathrinmediated endocytosis has recently
    been demonstrated also in plant cells, but its physiological and developmental
    roles remain unclear. Here, we assessed the roles of the clathrin-mediated mechanism
    of endocytosis in plants by genetic means. We interfered with clathrin heavy chain
    (CHC) function through mutants and dominant-negative approaches in Arabidopsis
    thaliana and established tools to manipulate clathrin function in a cell type-specific
    manner. The chc2 single mutants and dominant-negative CHC1 (HUB) transgenic lines
    were defective in bulk endocytosis as well as in internalization of prominent
    plasma membrane proteins. Interference with clathrin-mediated endocytosis led
    to defects in constitutive endocytic recycling of PIN auxin transporters and their
    polar distribution in embryos and roots. Consistent with this, these lines had
    altered auxin distribution patterns and associated auxin transport-related phenotypes,
    such as aberrant embryo patterning, imperfect cotyledon specification, agravitropic
    growth, and impaired lateral root organogenesis. Together, these data demonstrate
    a fundamental role for clathrin function in cell polarity, growth, patterning,
    and organogenesis in plants.
author:
- first_name: Saeko
  full_name: Kitakura, Saeko
  last_name: Kitakura
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Stéphanie
  full_name: Robert, Stéphanie
  last_name: Robert
- first_name: Christian
  full_name: Löfke, Christian
  last_name: Löfke
- first_name: Thomas
  full_name: Teichmann, Thomas
  last_name: Teichmann
- first_name: Hirokazu
  full_name: Tanaka, Hirokazu
  last_name: Tanaka
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Kitakura S, Vanneste S, Robert S, et al. Clathrin mediates endocytosis and
    polar distribution of PIN auxin transporters in Arabidopsis. <i>Plant Cell</i>.
    2011;23(5):1920-1931. doi:<a href="https://doi.org/10.1105/tpc.111.083030">10.1105/tpc.111.083030</a>
  apa: Kitakura, S., Vanneste, S., Robert, S., Löfke, C., Teichmann, T., Tanaka, H.,
    &#38; Friml, J. (2011). Clathrin mediates endocytosis and polar distribution of
    PIN auxin transporters in Arabidopsis. <i>Plant Cell</i>. American Society of
    Plant Biologists. <a href="https://doi.org/10.1105/tpc.111.083030">https://doi.org/10.1105/tpc.111.083030</a>
  chicago: Kitakura, Saeko, Steffen Vanneste, Stéphanie Robert, Christian Löfke, Thomas
    Teichmann, Hirokazu Tanaka, and Jiří Friml. “Clathrin Mediates Endocytosis and
    Polar Distribution of PIN Auxin Transporters in Arabidopsis.” <i>Plant Cell</i>.
    American Society of Plant Biologists, 2011. <a href="https://doi.org/10.1105/tpc.111.083030">https://doi.org/10.1105/tpc.111.083030</a>.
  ieee: S. Kitakura <i>et al.</i>, “Clathrin mediates endocytosis and polar distribution
    of PIN auxin transporters in Arabidopsis,” <i>Plant Cell</i>, vol. 23, no. 5.
    American Society of Plant Biologists, pp. 1920–1931, 2011.
  ista: Kitakura S, Vanneste S, Robert S, Löfke C, Teichmann T, Tanaka H, Friml J.
    2011. Clathrin mediates endocytosis and polar distribution of PIN auxin transporters
    in Arabidopsis. Plant Cell. 23(5), 1920–1931.
  mla: Kitakura, Saeko, et al. “Clathrin Mediates Endocytosis and Polar Distribution
    of PIN Auxin Transporters in Arabidopsis.” <i>Plant Cell</i>, vol. 23, no. 5,
    American Society of Plant Biologists, 2011, pp. 1920–31, doi:<a href="https://doi.org/10.1105/tpc.111.083030">10.1105/tpc.111.083030</a>.
  short: S. Kitakura, S. Vanneste, S. Robert, C. Löfke, T. Teichmann, H. Tanaka, J.
    Friml, Plant Cell 23 (2011) 1920–1931.
date_created: 2018-12-11T12:01:18Z
date_published: 2011-05-01T00:00:00Z
date_updated: 2021-01-12T07:40:57Z
day: '01'
doi: 10.1105/tpc.111.083030
extern: 1
intvolume: '        23'
issue: '5'
month: '05'
page: 1920 - 1931
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '3614'
quality_controlled: 0
status: public
title: Clathrin mediates endocytosis and polar distribution of PIN auxin transporters
  in Arabidopsis
type: journal_article
volume: 23
year: '2011'
...
---
_id: '3088'
abstract:
- lang: eng
  text: 'Background: Whereas the majority of animals develop toward a predetermined
    body plan, plants show iterative growth and continually produce new organs and
    structures from actively dividing meristems. This raises an intriguing question:
    How are these newly developed organs patterned? In Arabidopsis embryos, radial
    symmetry is broken by the bisymmetric specification of the cotyledons in the apical
    domain. Subsequently, this bisymmetry is propagated to the root promeristem. Results:
    Here we present a mutually inhibitory feedback loop between auxin and cytokinin
    that sets distinct boundaries of hormonal output. Cytokinins promote the bisymmetric
    distribution of the PIN-FORMED (PIN) auxin efflux proteins, which channel auxin
    toward a central domain. High auxin promotes transcription of the cytokinin signaling
    inhibitor AHP6, which closes the interaction loop. This bisymmetric auxin response
    domain specifies the differentiation of protoxylem in a bisymmetric pattern. In
    embryonic roots, cytokinin is required to translate a bisymmetric auxin response
    in the cotyledons to a bisymmetric vascular pattern in the root promeristem. Conclusions:
    Our results present an interactive feedback loop between hormonal signaling and
    transport by which small biases in hormonal input are propagated into distinct
    signaling domains to specify the vascular pattern in the root meristem. It is
    an intriguing possibility that such a mechanism could transform radial patterns
    and allow continuous vascular connections between other newly emerging organs.'
author:
- first_name: Anthony
  full_name: Bishopp, Anthony
  last_name: Bishopp
- first_name: Hanna
  full_name: Help, Hanna
  last_name: Help
- first_name: Sedeer
  full_name: El-Showk, Sedeer
  last_name: El Showk
- first_name: Dolf
  full_name: Weijers, Dolf
  last_name: Weijers
- first_name: Ben
  full_name: Scheres, Ben
  last_name: Scheres
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Eva
  full_name: Eva Benková
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
- first_name: Ari
  full_name: Mähönen, Ari Pekka
  last_name: Mähönen
- first_name: Ykä
  full_name: Helariutta, Ykä
  last_name: Helariutta
citation:
  ama: Bishopp A, Help H, El Showk S, et al. A mutually inhibitory interaction between
    auxin and cytokinin specifies vascular pattern in roots. <i>Current Biology</i>.
    2011;21(11):917-926. doi:<a href="https://doi.org/10.1016/j.cub.2011.04.017">10.1016/j.cub.2011.04.017</a>
  apa: Bishopp, A., Help, H., El Showk, S., Weijers, D., Scheres, B., Friml, J., …
    Helariutta, Y. (2011). A mutually inhibitory interaction between auxin and cytokinin
    specifies vascular pattern in roots. <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2011.04.017">https://doi.org/10.1016/j.cub.2011.04.017</a>
  chicago: Bishopp, Anthony, Hanna Help, Sedeer El Showk, Dolf Weijers, Ben Scheres,
    Jiří Friml, Eva Benková, Ari Mähönen, and Ykä Helariutta. “A Mutually Inhibitory
    Interaction between Auxin and Cytokinin Specifies Vascular Pattern in Roots.”
    <i>Current Biology</i>. Cell Press, 2011. <a href="https://doi.org/10.1016/j.cub.2011.04.017">https://doi.org/10.1016/j.cub.2011.04.017</a>.
  ieee: A. Bishopp <i>et al.</i>, “A mutually inhibitory interaction between auxin
    and cytokinin specifies vascular pattern in roots,” <i>Current Biology</i>, vol.
    21, no. 11. Cell Press, pp. 917–926, 2011.
  ista: Bishopp A, Help H, El Showk S, Weijers D, Scheres B, Friml J, Benková E, Mähönen
    A, Helariutta Y. 2011. A mutually inhibitory interaction between auxin and cytokinin
    specifies vascular pattern in roots. Current Biology. 21(11), 917–926.
  mla: Bishopp, Anthony, et al. “A Mutually Inhibitory Interaction between Auxin and
    Cytokinin Specifies Vascular Pattern in Roots.” <i>Current Biology</i>, vol. 21,
    no. 11, Cell Press, 2011, pp. 917–26, doi:<a href="https://doi.org/10.1016/j.cub.2011.04.017">10.1016/j.cub.2011.04.017</a>.
  short: A. Bishopp, H. Help, S. El Showk, D. Weijers, B. Scheres, J. Friml, E. Benková,
    A. Mähönen, Y. Helariutta, Current Biology 21 (2011) 917–926.
date_created: 2018-12-11T12:01:18Z
date_published: 2011-06-07T00:00:00Z
date_updated: 2021-01-12T07:40:58Z
day: '07'
doi: 10.1016/j.cub.2011.04.017
extern: 1
intvolume: '        21'
issue: '11'
month: '06'
page: 917 - 926
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '3613'
quality_controlled: 0
status: public
title: A mutually inhibitory interaction between auxin and cytokinin specifies vascular
  pattern in roots
type: journal_article
volume: 21
year: '2011'
...
---
_id: '3089'
abstract:
- lang: eng
  text: The phytohormone auxin is an important determinant of plant development. Directional
    auxin flow within tissues depends on polar localization of PIN auxin transporters.
    To explore regulation of PIN-mediated auxin transport, we screened for suppressors
    of PIN1 overexpression (supo) and identified an inositol polyphosphate 1-phosphatase
    mutant (supo1), with elevated inositol trisphosphate (InsP 3) and cytosolic Ca
    2+ levels. Pharmacological and genetic increases in InsP 3 or Ca 2+ levels also
    suppressed the PIN1 gain-of-function phenotypes and caused defects in basal PIN
    localization, auxin transport and auxin-mediated development. In contrast, the
    reductions in InsP 3 levels and Ca 2+ signaling antagonized the effects of the
    supo1 mutation and disrupted preferentially apical PIN localization. InsP 3 and
    Ca 2+ are evolutionarily conserved second messengers involved in various cellular
    functions, particularly stress responses. Our findings implicate them as modifiers
    of cell polarity and polar auxin transport, and highlight a potential integration
    point through which Ca 2+ signaling-related stimuli could influence auxin-mediated
    development.
author:
- first_name: Jing
  full_name: Zhang, Jing
  last_name: Zhang
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Philip
  full_name: Brewer, Philip B
  last_name: Brewer
- first_name: Marta
  full_name: Michniewicz, Marta
  last_name: Michniewicz
- first_name: Peter
  full_name: Peter Grones
  id: 399876EC-F248-11E8-B48F-1D18A9856A87
  last_name: Grones
- first_name: Jürgen
  full_name: Kleine-Vehn, Jürgen
  last_name: Kleine Vehn
- first_name: Christian
  full_name: Löfke, Christian
  last_name: Löfke
- first_name: Thomas
  full_name: Teichmann, Thomas
  last_name: Teichmann
- first_name: Agnieszka
  full_name: Bielach, Agnieszka
  last_name: Bielach
- first_name: Bernard
  full_name: Cannoot, Bernard
  last_name: Cannoot
- first_name: Klára
  full_name: Hoyerová, Klára
  last_name: Hoyerová
- first_name: Xu
  full_name: Xu Chen
  id: 4E5ADCAA-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Hong
  full_name: Xue, Hong-Wei
  last_name: Xue
- first_name: Eva
  full_name: Eva Benková
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
- first_name: Eva
  full_name: Zažímalová, Eva
  last_name: Zažímalová
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Zhang J, Vanneste S, Brewer P, et al. Inositol trisphosphate-induced ca^2+
    signaling modulates auxin transport and pin polarity. <i>Developmental Cell</i>.
    2011;20(6):855-866. doi:<a href="https://doi.org/10.1016/j.devcel.2011.05.013">10.1016/j.devcel.2011.05.013</a>
  apa: Zhang, J., Vanneste, S., Brewer, P., Michniewicz, M., Grones, P., Kleine Vehn,
    J., … Friml, J. (2011). Inositol trisphosphate-induced ca^2+ signaling modulates
    auxin transport and pin polarity. <i>Developmental Cell</i>. Cell Press. <a href="https://doi.org/10.1016/j.devcel.2011.05.013">https://doi.org/10.1016/j.devcel.2011.05.013</a>
  chicago: Zhang, Jing, Steffen Vanneste, Philip Brewer, Marta Michniewicz, Peter
    Grones, Jürgen Kleine Vehn, Christian Löfke, et al. “Inositol Trisphosphate-Induced
    Ca^2+ Signaling Modulates Auxin Transport and Pin Polarity.” <i>Developmental
    Cell</i>. Cell Press, 2011. <a href="https://doi.org/10.1016/j.devcel.2011.05.013">https://doi.org/10.1016/j.devcel.2011.05.013</a>.
  ieee: J. Zhang <i>et al.</i>, “Inositol trisphosphate-induced ca^2+ signaling modulates
    auxin transport and pin polarity,” <i>Developmental Cell</i>, vol. 20, no. 6.
    Cell Press, pp. 855–866, 2011.
  ista: Zhang J, Vanneste S, Brewer P, Michniewicz M, Grones P, Kleine Vehn J, Löfke
    C, Teichmann T, Bielach A, Cannoot B, Hoyerová K, Chen X, Xue H, Benková E, Zažímalová
    E, Friml J. 2011. Inositol trisphosphate-induced ca^2+ signaling modulates auxin
    transport and pin polarity. Developmental Cell. 20(6), 855–866.
  mla: Zhang, Jing, et al. “Inositol Trisphosphate-Induced Ca^2+ Signaling Modulates
    Auxin Transport and Pin Polarity.” <i>Developmental Cell</i>, vol. 20, no. 6,
    Cell Press, 2011, pp. 855–66, doi:<a href="https://doi.org/10.1016/j.devcel.2011.05.013">10.1016/j.devcel.2011.05.013</a>.
  short: J. Zhang, S. Vanneste, P. Brewer, M. Michniewicz, P. Grones, J. Kleine Vehn,
    C. Löfke, T. Teichmann, A. Bielach, B. Cannoot, K. Hoyerová, X. Chen, H. Xue,
    E. Benková, E. Zažímalová, J. Friml, Developmental Cell 20 (2011) 855–866.
date_created: 2018-12-11T12:01:18Z
date_published: 2011-06-14T00:00:00Z
date_updated: 2021-01-12T07:40:58Z
day: '14'
doi: 10.1016/j.devcel.2011.05.013
extern: 1
intvolume: '        20'
issue: '6'
month: '06'
page: 855 - 866
publication: Developmental Cell
publication_status: published
publisher: Cell Press
publist_id: '3612'
quality_controlled: 0
status: public
title: Inositol trisphosphate-induced ca^2+ signaling modulates auxin transport and
  pin polarity
type: journal_article
volume: 20
year: '2011'
...
---
_id: '3090'
abstract:
- lang: eng
  text: The polarized transport of the phytohormone auxin [1], which is crucial for
    the regulation of different stages of plant development [2, 3], depends on the
    asymmetric plasma membrane distribution of the PIN-FORMED (PIN) auxin efflux carriers
    [4, 5]. The PIN polar localization results from clathrin-mediated endocytosis
    (CME) from the plasma membrane and subsequent polar recycling [6]. The Arabidopsis
    genome encodes two groups of dynamin-related proteins (DRPs) that show homology
    to mammalian dynamin - a protein required for fission of endocytic vesicles during
    CME [7, 8]. Here we show by coimmunoprecipitation (coIP), bimolecular fluorescence
    complementation (BiFC), and Förster resonance energy transfer (FRET) that members
    of the DRP1 group closely associate with PIN proteins at the cell plate. Localization
    and phenotypic analysis of novel drp1 mutants revealed a requirement for DRP1
    function in correct PIN distribution and in auxin-mediated development. We propose
    that rapid and specific internalization of PIN proteins mediated by the DRP1 proteins
    and the associated CME machinery from the cell plate membranes during cytokinesis
    is an important mechanism for proper polar PIN positioning in interphase cells.
author:
- first_name: Jozef
  full_name: Mravec, Jozef
  last_name: Mravec
- first_name: Jan
  full_name: Petrášek, Jan
  last_name: Petrášek
- first_name: Na
  full_name: Li, Na
  last_name: Li
- first_name: Sjef
  full_name: Boeren, Sjef
  last_name: Boeren
- first_name: Rumyana
  full_name: Karlova, Rumyana
  last_name: Karlova
- first_name: Saeko
  full_name: Kitakura, Saeko
  last_name: Kitakura
- first_name: Markéta
  full_name: Pařezová, Markéta
  last_name: Pařezová
- first_name: Satoshi
  full_name: Naramoto, Satoshi
  last_name: Naramoto
- first_name: Thomasz
  full_name: Nodzyński, Thomasz
  last_name: Nodzyński
- first_name: Pankaj
  full_name: Dhonukshe, Pankaj
  last_name: Dhonukshe
- first_name: Sebastian
  full_name: Bednarek, Sebastian Y
  last_name: Bednarek
- first_name: Eva
  full_name: Zažímalová, Eva
  last_name: Zažímalová
- first_name: Sacco
  full_name: De Vries, Sacco
  last_name: De Vries
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Mravec J, Petrášek J, Li N, et al. Cell plate restricted association of DRP1A
    and PIN proteins is required for cell polarity establishment in arabidopsis. <i>Current
    Biology</i>. 2011;21(12):1055-1060. doi:<a href="https://doi.org/10.1016/j.cub.2011.05.018">10.1016/j.cub.2011.05.018</a>
  apa: Mravec, J., Petrášek, J., Li, N., Boeren, S., Karlova, R., Kitakura, S., …
    Friml, J. (2011). Cell plate restricted association of DRP1A and PIN proteins
    is required for cell polarity establishment in arabidopsis. <i>Current Biology</i>.
    Cell Press. <a href="https://doi.org/10.1016/j.cub.2011.05.018">https://doi.org/10.1016/j.cub.2011.05.018</a>
  chicago: Mravec, Jozef, Jan Petrášek, Na Li, Sjef Boeren, Rumyana Karlova, Saeko
    Kitakura, Markéta Pařezová, et al. “Cell Plate Restricted Association of DRP1A
    and PIN Proteins Is Required for Cell Polarity Establishment in Arabidopsis.”
    <i>Current Biology</i>. Cell Press, 2011. <a href="https://doi.org/10.1016/j.cub.2011.05.018">https://doi.org/10.1016/j.cub.2011.05.018</a>.
  ieee: J. Mravec <i>et al.</i>, “Cell plate restricted association of DRP1A and PIN
    proteins is required for cell polarity establishment in arabidopsis,” <i>Current
    Biology</i>, vol. 21, no. 12. Cell Press, pp. 1055–1060, 2011.
  ista: Mravec J, Petrášek J, Li N, Boeren S, Karlova R, Kitakura S, Pařezová M, Naramoto
    S, Nodzyński T, Dhonukshe P, Bednarek S, Zažímalová E, De Vries S, Friml J. 2011.
    Cell plate restricted association of DRP1A and PIN proteins is required for cell
    polarity establishment in arabidopsis. Current Biology. 21(12), 1055–1060.
  mla: Mravec, Jozef, et al. “Cell Plate Restricted Association of DRP1A and PIN Proteins
    Is Required for Cell Polarity Establishment in Arabidopsis.” <i>Current Biology</i>,
    vol. 21, no. 12, Cell Press, 2011, pp. 1055–60, doi:<a href="https://doi.org/10.1016/j.cub.2011.05.018">10.1016/j.cub.2011.05.018</a>.
  short: J. Mravec, J. Petrášek, N. Li, S. Boeren, R. Karlova, S. Kitakura, M. Pařezová,
    S. Naramoto, T. Nodzyński, P. Dhonukshe, S. Bednarek, E. Zažímalová, S. De Vries,
    J. Friml, Current Biology 21 (2011) 1055–1060.
date_created: 2018-12-11T12:01:19Z
date_published: 2011-06-21T00:00:00Z
date_updated: 2021-01-12T07:40:59Z
day: '21'
doi: 10.1016/j.cub.2011.05.018
extern: 1
intvolume: '        21'
issue: '12'
month: '06'
page: 1055 - 1060
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '3611'
quality_controlled: 0
status: public
title: Cell plate restricted association of DRP1A and PIN proteins is required for
  cell polarity establishment in arabidopsis
type: journal_article
volume: 21
year: '2011'
...
---
_id: '3091'
author:
- first_name: Michael
  full_name: Sauer, Michael
  last_name: Sauer
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Sauer M, Friml J. Fleeting hormone cues get stabilized for plant organogenesis.
    <i>Molecular Systems Biology</i>. 2011;7. doi:<a href="https://doi.org/10.1038/msb.2011.45">10.1038/msb.2011.45</a>
  apa: Sauer, M., &#38; Friml, J. (2011). Fleeting hormone cues get stabilized for
    plant organogenesis. <i>Molecular Systems Biology</i>. Nature Publishing Group.
    <a href="https://doi.org/10.1038/msb.2011.45">https://doi.org/10.1038/msb.2011.45</a>
  chicago: Sauer, Michael, and Jiří Friml. “Fleeting Hormone Cues Get Stabilized for
    Plant Organogenesis.” <i>Molecular Systems Biology</i>. Nature Publishing Group,
    2011. <a href="https://doi.org/10.1038/msb.2011.45">https://doi.org/10.1038/msb.2011.45</a>.
  ieee: M. Sauer and J. Friml, “Fleeting hormone cues get stabilized for plant organogenesis,”
    <i>Molecular Systems Biology</i>, vol. 7. Nature Publishing Group, 2011.
  ista: Sauer M, Friml J. 2011. Fleeting hormone cues get stabilized for plant organogenesis.
    Molecular Systems Biology. 7.
  mla: Sauer, Michael, and Jiří Friml. “Fleeting Hormone Cues Get Stabilized for Plant
    Organogenesis.” <i>Molecular Systems Biology</i>, vol. 7, Nature Publishing Group,
    2011, doi:<a href="https://doi.org/10.1038/msb.2011.45">10.1038/msb.2011.45</a>.
  short: M. Sauer, J. Friml, Molecular Systems Biology 7 (2011).
date_created: 2018-12-11T12:01:19Z
date_published: 2011-07-05T00:00:00Z
date_updated: 2021-01-12T07:41:00Z
day: '05'
doi: 10.1038/msb.2011.45
extern: '1'
external_id:
  pmid:
  - '21734646'
intvolume: '         7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3159970/
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Molecular Systems Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '3610'
quality_controlled: '1'
status: public
title: Fleeting hormone cues get stabilized for plant organogenesis
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2011'
...
