---
_id: '495'
abstract:
- lang: eng
  text: An automaton with advice is a finite state automaton which has access to an
    additional fixed infinite string called an advice tape. We refine the Myhill-Nerode
    theorem to characterize the languages of finite strings that are accepted by automata
    with advice. We do the same for tree automata with advice.
alternative_title:
- EPTCS
author:
- first_name: Alex
  full_name: Kruckman, Alex
  last_name: Kruckman
- first_name: Sasha
  full_name: Rubin, Sasha
  id: 2EC51194-F248-11E8-B48F-1D18A9856A87
  last_name: Rubin
- first_name: John
  full_name: Sheridan, John
  last_name: Sheridan
- first_name: Ben
  full_name: Zax, Ben
  last_name: Zax
citation:
  ama: 'Kruckman A, Rubin S, Sheridan J, Zax B. A Myhill Nerode theorem for automata
    with advice. In: <i>Proceedings GandALF 2012</i>. Vol 96. Open Publishing Association;
    2012:238-246. doi:<a href="https://doi.org/10.4204/EPTCS.96.18">10.4204/EPTCS.96.18</a>'
  apa: 'Kruckman, A., Rubin, S., Sheridan, J., &#38; Zax, B. (2012). A Myhill Nerode
    theorem for automata with advice. In <i>Proceedings GandALF 2012</i> (Vol. 96,
    pp. 238–246). Napoli, Italy: Open Publishing Association. <a href="https://doi.org/10.4204/EPTCS.96.18">https://doi.org/10.4204/EPTCS.96.18</a>'
  chicago: Kruckman, Alex, Sasha Rubin, John Sheridan, and Ben Zax. “A Myhill Nerode
    Theorem for Automata with Advice.” In <i>Proceedings GandALF 2012</i>, 96:238–46.
    Open Publishing Association, 2012. <a href="https://doi.org/10.4204/EPTCS.96.18">https://doi.org/10.4204/EPTCS.96.18</a>.
  ieee: A. Kruckman, S. Rubin, J. Sheridan, and B. Zax, “A Myhill Nerode theorem for
    automata with advice,” in <i>Proceedings GandALF 2012</i>, Napoli, Italy, 2012,
    vol. 96, pp. 238–246.
  ista: 'Kruckman A, Rubin S, Sheridan J, Zax B. 2012. A Myhill Nerode theorem for
    automata with advice. Proceedings GandALF 2012. GandALF: Games, Automata, Logics
    and Formal Verification, EPTCS, vol. 96, 238–246.'
  mla: Kruckman, Alex, et al. “A Myhill Nerode Theorem for Automata with Advice.”
    <i>Proceedings GandALF 2012</i>, vol. 96, Open Publishing Association, 2012, pp.
    238–46, doi:<a href="https://doi.org/10.4204/EPTCS.96.18">10.4204/EPTCS.96.18</a>.
  short: A. Kruckman, S. Rubin, J. Sheridan, B. Zax, in:, Proceedings GandALF 2012,
    Open Publishing Association, 2012, pp. 238–246.
conference:
  end_date: 2012-09-08
  location: Napoli, Italy
  name: 'GandALF: Games, Automata, Logics and Formal Verification'
  start_date: 2012-09-06
date_created: 2018-12-11T11:46:47Z
date_published: 2012-10-07T00:00:00Z
date_updated: 2021-01-12T08:01:04Z
day: '07'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.4204/EPTCS.96.18
ec_funded: 1
file:
- access_level: open_access
  checksum: 56277f95edc9d531fa3bdc5f9579fda8
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:15:31Z
  date_updated: 2020-07-14T12:46:35Z
  file_id: '5152'
  file_name: IST-2018-944-v1+1_2012_Rubin_A_Myhill.pdf
  file_size: 97736
  relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: '        96'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '10'
oa: 1
oa_version: Published Version
page: 238 - 246
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
publication: Proceedings GandALF 2012
publication_status: published
publisher: Open Publishing Association
publist_id: '7325'
pubrep_id: '944'
quality_controlled: '1'
scopus_import: 1
status: public
title: A Myhill Nerode theorem for automata with advice
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 96
year: '2012'
...
---
_id: '496'
abstract:
- lang: eng
  text: 'We study the expressive power of logical interpretations on the class of
    scattered trees, namely those with countably many infinite branches. Scattered
    trees can be thought of as the tree analogue of scattered linear orders. Every
    scattered tree has an ordinal rank that reflects the structure of its infinite
    branches. We prove, roughly, that trees and orders of large rank cannot be interpreted
    in scattered trees of small rank. We consider a quite general notion of interpretation:
    each element of the interpreted structure is represented by a set of tuples of
    subsets of the interpreting tree. Our trees are countable, not necessarily finitely
    branching, and may have finitely many unary predicates as labellings. We also
    show how to replace injective set-interpretations in (not necessarily scattered)
    trees by ''finitary'' set-interpretations.'
alternative_title:
- LICS
article_number: '6280474'
author:
- first_name: Alexander
  full_name: Rabinovich, Alexander
  last_name: Rabinovich
- first_name: Sasha
  full_name: Rubin, Sasha
  id: 2EC51194-F248-11E8-B48F-1D18A9856A87
  last_name: Rubin
citation:
  ama: 'Rabinovich A, Rubin S. Interpretations in trees with countably many branches.
    In: IEEE; 2012. doi:<a href="https://doi.org/10.1109/LICS.2012.65">10.1109/LICS.2012.65</a>'
  apa: 'Rabinovich, A., &#38; Rubin, S. (2012). Interpretations in trees with countably
    many branches. Presented at the LICS: Symposium on Logic in Computer Science,
    Dubrovnik, Croatia: IEEE. <a href="https://doi.org/10.1109/LICS.2012.65">https://doi.org/10.1109/LICS.2012.65</a>'
  chicago: Rabinovich, Alexander, and Sasha Rubin. “Interpretations in Trees with
    Countably Many Branches.” IEEE, 2012. <a href="https://doi.org/10.1109/LICS.2012.65">https://doi.org/10.1109/LICS.2012.65</a>.
  ieee: 'A. Rabinovich and S. Rubin, “Interpretations in trees with countably many
    branches,” presented at the LICS: Symposium on Logic in Computer Science, Dubrovnik,
    Croatia, 2012.'
  ista: 'Rabinovich A, Rubin S. 2012. Interpretations in trees with countably many
    branches. LICS: Symposium on Logic in Computer Science, LICS, , 6280474.'
  mla: Rabinovich, Alexander, and Sasha Rubin. <i>Interpretations in Trees with Countably
    Many Branches</i>. 6280474, IEEE, 2012, doi:<a href="https://doi.org/10.1109/LICS.2012.65">10.1109/LICS.2012.65</a>.
  short: A. Rabinovich, S. Rubin, in:, IEEE, 2012.
conference:
  end_date: 2012-06-28
  location: Dubrovnik, Croatia
  name: 'LICS: Symposium on Logic in Computer Science'
  start_date: 2012-06-25
date_created: 2018-12-11T11:46:47Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T08:01:05Z
day: '01'
department:
- _id: KrCh
doi: 10.1109/LICS.2012.65
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arise.or.at/pubpdf/Interpretations_in_Trees_with_Countably_Many_Branches.pdf
month: '01'
oa: 1
oa_version: Preprint
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication_status: published
publisher: IEEE
publist_id: '7324'
quality_controlled: '1'
scopus_import: 1
status: public
title: Interpretations in trees with countably many branches
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '497'
abstract:
- lang: eng
  text: 'One central issue in the formal design and analysis of reactive systems is
    the notion of refinement that asks whether all behaviors of the implementation
    is allowed by the specification. The local interpretation of behavior leads to
    the notion of simulation. Alternating transition systems (ATSs) provide a general
    model for composite reactive systems, and the simulation relation for ATSs is
    known as alternating simulation. The simulation relation for fair transition systems
    is called fair simulation. In this work our main contributions are as follows:
    (1) We present an improved algorithm for fair simulation with Büchi fairness constraints;
    our algorithm requires O(n 3·m) time as compared to the previous known O(n 6)-time
    algorithm, where n is the number of states and m is the number of transitions.
    (2) We present a game based algorithm for alternating simulation that requires
    O(m2)-time as compared to the previous known O((n·m)2)-time algorithm, where n
    is the number of states and m is the size of transition relation. (3) We present
    an iterative algorithm for alternating simulation that matches the time complexity
    of the game based algorithm, but is more space efficient than the game based algorithm.
    © Krishnendu Chatterjee, Siddhesh Chaubal, and Pritish Kamath.'
alternative_title:
- LIPIcs
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Siddhesh
  full_name: Chaubal, Siddhesh
  last_name: Chaubal
- first_name: Pritish
  full_name: Kamath, Pritish
  last_name: Kamath
citation:
  ama: 'Chatterjee K, Chaubal S, Kamath P. Faster algorithms for alternating refinement
    relations. In: Vol 16. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2012:167-182.
    doi:<a href="https://doi.org/10.4230/LIPIcs.CSL.2012.167">10.4230/LIPIcs.CSL.2012.167</a>'
  apa: 'Chatterjee, K., Chaubal, S., &#38; Kamath, P. (2012). Faster algorithms for
    alternating refinement relations (Vol. 16, pp. 167–182). Presented at the EACSL:
    European Association for Computer Science Logic, Fontainebleau, France: Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.CSL.2012.167">https://doi.org/10.4230/LIPIcs.CSL.2012.167</a>'
  chicago: Chatterjee, Krishnendu, Siddhesh Chaubal, and Pritish Kamath. “Faster Algorithms
    for Alternating Refinement Relations,” 16:167–82. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2012. <a href="https://doi.org/10.4230/LIPIcs.CSL.2012.167">https://doi.org/10.4230/LIPIcs.CSL.2012.167</a>.
  ieee: 'K. Chatterjee, S. Chaubal, and P. Kamath, “Faster algorithms for alternating
    refinement relations,” presented at the EACSL: European Association for Computer
    Science Logic, Fontainebleau, France, 2012, vol. 16, pp. 167–182.'
  ista: 'Chatterjee K, Chaubal S, Kamath P. 2012. Faster algorithms for alternating
    refinement relations. EACSL: European Association for Computer Science Logic,
    LIPIcs, vol. 16, 167–182.'
  mla: Chatterjee, Krishnendu, et al. <i>Faster Algorithms for Alternating Refinement
    Relations</i>. Vol. 16, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012,
    pp. 167–82, doi:<a href="https://doi.org/10.4230/LIPIcs.CSL.2012.167">10.4230/LIPIcs.CSL.2012.167</a>.
  short: K. Chatterjee, S. Chaubal, P. Kamath, in:, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2012, pp. 167–182.
conference:
  end_date: 2012-09-06
  location: Fontainebleau, France
  name: 'EACSL: European Association for Computer Science Logic'
  start_date: 2012-09-03
date_created: 2018-12-11T11:46:48Z
date_published: 2012-09-01T00:00:00Z
date_updated: 2023-02-23T12:23:32Z
day: '01'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.CSL.2012.167
ec_funded: 1
file:
- access_level: open_access
  checksum: f1b0dd99240800db2d7dbf9b5131fe5e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:08:50Z
  date_updated: 2020-07-14T12:46:35Z
  file_id: '4712'
  file_name: IST-2018-943-v1+1_2012_Chatterjee_Faster_Algorithms.pdf
  file_size: 471236
  relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: '        16'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '09'
oa: 1
oa_version: Published Version
page: 167 - 182
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '7323'
pubrep_id: '943'
quality_controlled: '1'
related_material:
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  - id: '5378'
    relation: earlier_version
    status: public
scopus_import: 1
status: public
title: Faster algorithms for alternating refinement relations
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    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2012'
...
---
_id: '498'
abstract:
- lang: eng
  text: Understanding patterns and correlates of local adaptation in heterogeneous
    landscapes can provide important information in the selection of appropriate seed
    sources for restoration. We assessed the extent of local adaptation of fitness
    components in 12 population pairs of the perennial herb Rutidosis leptorrhynchoides
    (Asteraceae) and examined whether spatial scale (0.7-600 km), environmental distance,
    quantitative (QST) and neutral (FST) genetic differentiation, and size of the
    local and foreign populations could predict patterns of adaptive differentiation.
    Local adaptation varied among populations and fitness components. Including all
    population pairs, local adaptation was observed for seedling survival, but not
    for biomass, while foreign genotype advantage was observed for reproduction (number
    of inflorescences). Among population pairs, local adaptation increased with QST
    and local population size for biomass. QST was associated with environmental distance,
    suggesting ecological selection for phenotypic divergence. However, low FST and
    variation in population structure in small populations demonstrates the interaction
    of gene flow and drift in constraining local adaptation in R. leptorrhynchoides.
    Our study indicates that for species in heterogeneous landscapes, collecting seed
    from large populations from similar environments to candidate sites is likely
    to provide the most appropriate seed sources for restoration.
acknowledgement: "We thank Graham Pickup, David Steer, Linda Broadhurst, Lan Li and
  Carole Elliott for technical assistance. The New\r\nSouth Wales Department of Environment
  and Climate Change, ACT Parks, Conservation and Lands and the\r\nDepartment of Sustainability
  and Environment in Victoria provided permits for seed and soil collection. We thank\r\nSpencer
  C. H. Barrett for comments that improved the quality of the manuscript.\r\n"
author:
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- first_name: David
  full_name: Rowell, David
  last_name: Rowell
- first_name: Andrew
  full_name: Young, Andrew
  last_name: Young
citation:
  ama: 'Pickup M, Field D, Rowell D, Young A. Predicting local adaptation in fragmented
    plant populations: Implications for restoration genetics. <i>Evolutionary Applications</i>.
    2012;5(8):913-924. doi:<a href="https://doi.org/10.1111/j.1752-4571.2012.00284.x">10.1111/j.1752-4571.2012.00284.x</a>'
  apa: 'Pickup, M., Field, D., Rowell, D., &#38; Young, A. (2012). Predicting local
    adaptation in fragmented plant populations: Implications for restoration genetics.
    <i>Evolutionary Applications</i>. Wiley-Blackwell. <a href="https://doi.org/10.1111/j.1752-4571.2012.00284.x">https://doi.org/10.1111/j.1752-4571.2012.00284.x</a>'
  chicago: 'Pickup, Melinda, David Field, David Rowell, and Andrew Young. “Predicting
    Local Adaptation in Fragmented Plant Populations: Implications for Restoration
    Genetics.” <i>Evolutionary Applications</i>. Wiley-Blackwell, 2012. <a href="https://doi.org/10.1111/j.1752-4571.2012.00284.x">https://doi.org/10.1111/j.1752-4571.2012.00284.x</a>.'
  ieee: 'M. Pickup, D. Field, D. Rowell, and A. Young, “Predicting local adaptation
    in fragmented plant populations: Implications for restoration genetics,” <i>Evolutionary
    Applications</i>, vol. 5, no. 8. Wiley-Blackwell, pp. 913–924, 2012.'
  ista: 'Pickup M, Field D, Rowell D, Young A. 2012. Predicting local adaptation in
    fragmented plant populations: Implications for restoration genetics. Evolutionary
    Applications. 5(8), 913–924.'
  mla: 'Pickup, Melinda, et al. “Predicting Local Adaptation in Fragmented Plant Populations:
    Implications for Restoration Genetics.” <i>Evolutionary Applications</i>, vol.
    5, no. 8, Wiley-Blackwell, 2012, pp. 913–24, doi:<a href="https://doi.org/10.1111/j.1752-4571.2012.00284.x">10.1111/j.1752-4571.2012.00284.x</a>.'
  short: M. Pickup, D. Field, D. Rowell, A. Young, Evolutionary Applications 5 (2012)
    913–924.
date_created: 2018-12-11T11:46:48Z
date_published: 2012-12-01T00:00:00Z
date_updated: 2021-01-12T08:01:06Z
day: '01'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.1111/j.1752-4571.2012.00284.x
file:
- access_level: open_access
  checksum: 233007138606aca5a2f75f7ae1742f43
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  creator: system
  date_created: 2018-12-12T10:10:33Z
  date_updated: 2020-07-14T12:46:35Z
  file_id: '4821'
  file_name: IST-2018-942-v1+1_Pickup_et_al-2012-Evolutionary_Applications.pdf
  file_size: 396136
  relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: '         5'
issue: '8'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '12'
oa: 1
oa_version: Published Version
page: 913 - 924
publication: Evolutionary Applications
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7322'
pubrep_id: '942'
quality_controlled: '1'
status: public
title: 'Predicting local adaptation in fragmented plant populations: Implications
  for restoration genetics'
tmp:
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  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2012'
...
---
_id: '506'
article_processing_charge: No
article_type: original
author:
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: 'Sixt MK. Cell migration: Fibroblasts find a new way to get ahead. <i>Journal
    of Cell Biology</i>. 2012;197(3):347-349. doi:<a href="https://doi.org/10.1083/jcb.201204039">10.1083/jcb.201204039</a>'
  apa: 'Sixt, M. K. (2012). Cell migration: Fibroblasts find a new way to get ahead.
    <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href="https://doi.org/10.1083/jcb.201204039">https://doi.org/10.1083/jcb.201204039</a>'
  chicago: 'Sixt, Michael K. “Cell Migration: Fibroblasts Find a New Way to Get Ahead.”
    <i>Journal of Cell Biology</i>. Rockefeller University Press, 2012. <a href="https://doi.org/10.1083/jcb.201204039">https://doi.org/10.1083/jcb.201204039</a>.'
  ieee: 'M. K. Sixt, “Cell migration: Fibroblasts find a new way to get ahead,” <i>Journal
    of Cell Biology</i>, vol. 197, no. 3. Rockefeller University Press, pp. 347–349,
    2012.'
  ista: 'Sixt MK. 2012. Cell migration: Fibroblasts find a new way to get ahead. Journal
    of Cell Biology. 197(3), 347–349.'
  mla: 'Sixt, Michael K. “Cell Migration: Fibroblasts Find a New Way to Get Ahead.”
    <i>Journal of Cell Biology</i>, vol. 197, no. 3, Rockefeller University Press,
    2012, pp. 347–49, doi:<a href="https://doi.org/10.1083/jcb.201204039">10.1083/jcb.201204039</a>.'
  short: M.K. Sixt, Journal of Cell Biology 197 (2012) 347–349.
date_created: 2018-12-11T11:46:51Z
date_published: 2012-04-30T00:00:00Z
date_updated: 2021-01-12T08:01:11Z
day: '30'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.1083/jcb.201204039
file:
- access_level: open_access
  checksum: 45c02be33ebd99fc3077d60b9c90bdfa
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-02-12T09:03:09Z
  date_updated: 2020-07-14T12:46:36Z
  file_id: '5957'
  file_name: 2012_CellBiology_Sixt.pdf
  file_size: 986566
  relation: main_file
file_date_updated: 2020-07-14T12:46:36Z
has_accepted_license: '1'
intvolume: '       197'
issue: '3'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '04'
oa: 1
oa_version: Published Version
page: 347 - 349
publication: Journal of Cell Biology
publication_status: published
publisher: Rockefeller University Press
publist_id: '7314'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Cell migration: Fibroblasts find a new way to get ahead'
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 197
year: '2012'
...
---
_id: '5377'
abstract:
- lang: eng
  text: 'Two-player games on graphs are central in many problems in formal verification
    and program analysis such as synthesis and verification of open systems. In this
    work we consider solving recursive game graphs (or pushdown game graphs) that
    can model the control flow of sequential programs with recursion. While pushdown
    games have been studied before with qualitative objectives, such as reachability
    and ω-regular objectives, in this work we study for the first time such games
    with the most well-studied quantitative objective, namely, mean-payoff objectives.
    In pushdown games two types of strategies are relevant: (1) global strategies,
    that depend on the entire global history; and (2) modular strategies, that have
    only local memory and thus do not depend on the context of invocation, but only
    on the history of the current invocation of the module. Our main results are as
    follows: (1) One-player pushdown games with mean-payoff objectives under global
    strategies are decidable in polynomial time. (2) Two- player pushdown games with
    mean-payoff objectives under global strategies are undecidable. (3) One-player
    pushdown games with mean-payoff objectives under modular strategies are NP- hard.
    (4) Two-player pushdown games with mean-payoff objectives under modular strategies
    can be solved in NP (i.e., both one-player and two-player pushdown games with
    mean-payoff objectives under modular strategies are NP-complete). We also establish
    the optimal strategy complexity showing that global strategies for mean-payoff
    objectives require infinite memory even in one-player pushdown games; and memoryless
    modular strategies are sufficient in two- player pushdown games. Finally we also
    show that all the problems have the same complexity if the stack boundedness condition
    is added, where along with the mean-payoff objective the player must also ensure
    that the stack height is bounded.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Yaron
  full_name: Velner, Yaron
  last_name: Velner
citation:
  ama: Chatterjee K, Velner Y. <i>Mean-Payoff Pushdown Games</i>. IST Austria; 2012.
    doi:<a href="https://doi.org/10.15479/AT:IST-2012-0002">10.15479/AT:IST-2012-0002</a>
  apa: Chatterjee, K., &#38; Velner, Y. (2012). <i>Mean-payoff pushdown games</i>.
    IST Austria. <a href="https://doi.org/10.15479/AT:IST-2012-0002">https://doi.org/10.15479/AT:IST-2012-0002</a>
  chicago: Chatterjee, Krishnendu, and Yaron Velner. <i>Mean-Payoff Pushdown Games</i>.
    IST Austria, 2012. <a href="https://doi.org/10.15479/AT:IST-2012-0002">https://doi.org/10.15479/AT:IST-2012-0002</a>.
  ieee: K. Chatterjee and Y. Velner, <i>Mean-payoff pushdown games</i>. IST Austria,
    2012.
  ista: Chatterjee K, Velner Y. 2012. Mean-payoff pushdown games, IST Austria, 33p.
  mla: Chatterjee, Krishnendu, and Yaron Velner. <i>Mean-Payoff Pushdown Games</i>.
    IST Austria, 2012, doi:<a href="https://doi.org/10.15479/AT:IST-2012-0002">10.15479/AT:IST-2012-0002</a>.
  short: K. Chatterjee, Y. Velner, Mean-Payoff Pushdown Games, IST Austria, 2012.
date_created: 2018-12-12T11:38:59Z
date_published: 2012-07-02T00:00:00Z
date_updated: 2023-02-23T11:05:50Z
day: '02'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2012-0002
file:
- access_level: open_access
  checksum: a03c08c1589dbb0c96183a8bcf3ab240
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:00Z
  date_updated: 2020-07-14T12:46:38Z
  file_id: '5522'
  file_name: IST-2012-002_IST-2012-0002.pdf
  file_size: 592098
  relation: main_file
file_date_updated: 2020-07-14T12:46:38Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '33'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '10'
related_material:
  record:
  - id: '2956'
    relation: later_version
    status: public
status: public
title: Mean-payoff pushdown games
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '5378'
abstract:
- lang: eng
  text: 'One central issue in the formal design and analysis of reactive systems is
    the notion of refinement that asks whether all behaviors of the implementation
    is allowed by the specification. The local interpretation of behavior leads to
    the notion of simulation. Alternating transition systems (ATSs) provide a general
    model for composite reactive systems, and the simulation relation for ATSs is
    known as alternating simulation. The simulation relation for fair transition systems
    is called fair simulation. In this work our main contributions are as follows:
    (1) We present an improved algorithm for fair simulation with Büchi fairness constraints;
    our algorithm requires O(n3 · m) time as compared to the previous known O(n6)-time
    algorithm, where n is the number of states and m is the number of transitions.
    (2) We present a game based algorithm for alternating simulation that requires
    O(m2)-time as compared to the previous known O((n · m)2)-time algorithm, where
    n is the number of states and m is the size of transition relation. (3) We present
    an iterative algorithm for alternating simulation that matches the time complexity
    of the game based algorithm, but is more space efficient than the game based algorithm.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Siddhesh
  full_name: Chaubal, Siddhesh
  last_name: Chaubal
- first_name: Pritish
  full_name: Kamath, Pritish
  last_name: Kamath
citation:
  ama: Chatterjee K, Chaubal S, Kamath P. <i>Faster Algorithms for Alternating Refinement
    Relations</i>. IST Austria; 2012. doi:<a href="https://doi.org/10.15479/AT:IST-2012-0001">10.15479/AT:IST-2012-0001</a>
  apa: Chatterjee, K., Chaubal, S., &#38; Kamath, P. (2012). <i>Faster algorithms
    for alternating refinement relations</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2012-0001">https://doi.org/10.15479/AT:IST-2012-0001</a>
  chicago: Chatterjee, Krishnendu, Siddhesh Chaubal, and Pritish Kamath. <i>Faster
    Algorithms for Alternating Refinement Relations</i>. IST Austria, 2012. <a href="https://doi.org/10.15479/AT:IST-2012-0001">https://doi.org/10.15479/AT:IST-2012-0001</a>.
  ieee: K. Chatterjee, S. Chaubal, and P. Kamath, <i>Faster algorithms for alternating
    refinement relations</i>. IST Austria, 2012.
  ista: Chatterjee K, Chaubal S, Kamath P. 2012. Faster algorithms for alternating
    refinement relations, IST Austria, 21p.
  mla: Chatterjee, Krishnendu, et al. <i>Faster Algorithms for Alternating Refinement
    Relations</i>. IST Austria, 2012, doi:<a href="https://doi.org/10.15479/AT:IST-2012-0001">10.15479/AT:IST-2012-0001</a>.
  short: K. Chatterjee, S. Chaubal, P. Kamath, Faster Algorithms for Alternating Refinement
    Relations, IST Austria, 2012.
date_created: 2018-12-12T11:38:59Z
date_published: 2012-07-04T00:00:00Z
date_updated: 2023-02-23T12:21:38Z
day: '04'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2012-0001
file:
- access_level: open_access
  checksum: ec8d1857cc7095d3de5107a0162ced37
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:28Z
  date_updated: 2020-07-14T12:46:39Z
  file_id: '5489'
  file_name: IST-2012-0001_IST-2012-0001.pdf
  file_size: 394256
  relation: main_file
file_date_updated: 2020-07-14T12:46:39Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '21'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '14'
related_material:
  record:
  - id: '497'
    relation: later_version
    status: public
status: public
title: Faster algorithms for alternating refinement relations
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '5396'
abstract:
- lang: eng
  text: We consider the problem of inference in agraphical model with binary variables.
    While in theory it is arguably preferable to compute marginal probabilities, in
    practice researchers often use MAP inference due to the availability of efficient
    discrete optimization algorithms. We bridge the gap between the two approaches
    by introducing the Discrete  Marginals technique in which approximate marginals
    are obtained by minimizing an objective function with unary and pair-wise terms
    over a discretized domain. This allows the use of techniques originally devel-oped
    for MAP-MRF inference and learning. We explore two ways to set up the objective
    function - by discretizing the Bethe free energy and by learning it  from training
    data. Experimental results show that for certain types of graphs a learned function
    can out-perform the  Bethe approximation. We also establish a link between the
    Bethe free energy and submodular functions.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Filip
  full_name: Korc, Filip
  id: 476A2FD6-F248-11E8-B48F-1D18A9856A87
  last_name: Korc
- first_name: Vladimir
  full_name: Kolmogorov, Vladimir
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: Korc F, Kolmogorov V, Lampert C. <i>Approximating Marginals Using Discrete
    Energy Minimization</i>. IST Austria; 2012. doi:<a href="https://doi.org/10.15479/AT:IST-2012-0003">10.15479/AT:IST-2012-0003</a>
  apa: Korc, F., Kolmogorov, V., &#38; Lampert, C. (2012). <i>Approximating marginals
    using discrete energy minimization</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2012-0003">https://doi.org/10.15479/AT:IST-2012-0003</a>
  chicago: Korc, Filip, Vladimir Kolmogorov, and Christoph Lampert. <i>Approximating
    Marginals Using Discrete Energy Minimization</i>. IST Austria, 2012. <a href="https://doi.org/10.15479/AT:IST-2012-0003">https://doi.org/10.15479/AT:IST-2012-0003</a>.
  ieee: F. Korc, V. Kolmogorov, and C. Lampert, <i>Approximating marginals using discrete
    energy minimization</i>. IST Austria, 2012.
  ista: Korc F, Kolmogorov V, Lampert C. 2012. Approximating marginals using discrete
    energy minimization, IST Austria, 13p.
  mla: Korc, Filip, et al. <i>Approximating Marginals Using Discrete Energy Minimization</i>.
    IST Austria, 2012, doi:<a href="https://doi.org/10.15479/AT:IST-2012-0003">10.15479/AT:IST-2012-0003</a>.
  short: F. Korc, V. Kolmogorov, C. Lampert, Approximating Marginals Using Discrete
    Energy Minimization, IST Austria, 2012.
date_created: 2018-12-12T11:39:06Z
date_published: 2012-07-23T00:00:00Z
date_updated: 2023-02-23T11:13:22Z
day: '23'
ddc:
- '000'
department:
- _id: VlKo
- _id: ChLa
doi: 10.15479/AT:IST-2012-0003
file:
- access_level: open_access
  checksum: 7e0ba85ad123b13223aaf6cdde2d288c
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:29Z
  date_updated: 2020-07-14T12:46:44Z
  file_id: '5490'
  file_name: IST-2012-0003_IST-2012-0003.pdf
  file_size: 618744
  relation: main_file
file_date_updated: 2020-07-14T12:46:44Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '13'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '36'
related_material:
  record:
  - id: '3124'
    relation: earlier_version
    status: public
status: public
title: Approximating marginals using discrete energy minimization
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '5398'
abstract:
- lang: eng
  text: This document is created as a part of the project “Repository for Research
    Data on IST Austria”. It summarises the actual state of research data at IST Austria,
    based on survey results. It supports the choice of appropriate software, which
    would best fit the requirements of their users, the researchers.
author:
- first_name: Jana
  full_name: Porsche, Jana
  id: 3252EDC2-F248-11E8-B48F-1D18A9856A87
  last_name: Porsche
citation:
  ama: Porsche J. <i>Actual State of Research Data @ ISTAustria</i>. IST Austria;
    2012.
  apa: Porsche, J. (2012). <i>Actual state of research data @ ISTAustria</i>. IST
    Austria.
  chicago: Porsche, Jana. <i>Actual State of Research Data @ ISTAustria</i>. IST Austria,
    2012.
  ieee: J. Porsche, <i>Actual state of research data @ ISTAustria</i>. IST Austria,
    2012.
  ista: Porsche J. 2012. Actual state of research data @ ISTAustria, IST Austria,p.
  mla: Porsche, Jana. <i>Actual State of Research Data @ ISTAustria</i>. IST Austria,
    2012.
  short: J. Porsche, Actual State of Research Data @ ISTAustria, IST Austria, 2012.
date_created: 2018-12-12T11:39:06Z
date_published: 2012-11-12T00:00:00Z
date_updated: 2020-07-14T23:04:49Z
day: '12'
ddc:
- '020'
department:
- _id: E-Lib
file:
- access_level: open_access
  checksum: e0a7c041eea1ca4b70ab6f9ec5177f4e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:11Z
  date_updated: 2020-07-14T12:46:44Z
  file_id: '5472'
  file_name: IST-2012-103-v1+1_Actual_state_of_research_data_@_IST_Austria.pdf
  file_size: 238544
  relation: main_file
file_date_updated: 2020-07-14T12:46:44Z
has_accepted_license: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
publication_status: published
publisher: IST Austria
pubrep_id: '103'
status: public
title: Actual state of research data @ ISTAustria
type: report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '5745'
article_processing_charge: No
author:
- first_name: Ashutosh
  full_name: Gupta, Ashutosh
  last_name: Gupta
citation:
  ama: 'Gupta A. Improved Single Pass Algorithms for Resolution Proof Reduction. In:
    <i>Automated Technology for Verification and Analysis</i>. Vol 7561. LNCS. Berlin,
    Heidelberg: Springer Berlin Heidelberg; 2012:107-121. doi:<a href="https://doi.org/10.1007/978-3-642-33386-6_10">10.1007/978-3-642-33386-6_10</a>'
  apa: 'Gupta, A. (2012). Improved Single Pass Algorithms for Resolution Proof Reduction.
    In <i>Automated Technology for Verification and Analysis</i> (Vol. 7561, pp. 107–121).
    Berlin, Heidelberg: Springer Berlin Heidelberg. <a href="https://doi.org/10.1007/978-3-642-33386-6_10">https://doi.org/10.1007/978-3-642-33386-6_10</a>'
  chicago: 'Gupta, Ashutosh. “Improved Single Pass Algorithms for Resolution Proof
    Reduction.” In <i>Automated Technology for Verification and Analysis</i>, 7561:107–21.
    LNCS. Berlin, Heidelberg: Springer Berlin Heidelberg, 2012. <a href="https://doi.org/10.1007/978-3-642-33386-6_10">https://doi.org/10.1007/978-3-642-33386-6_10</a>.'
  ieee: 'A. Gupta, “Improved Single Pass Algorithms for Resolution Proof Reduction,”
    in <i>Automated Technology for Verification and Analysis</i>, vol. 7561, Berlin,
    Heidelberg: Springer Berlin Heidelberg, 2012, pp. 107–121.'
  ista: 'Gupta A. 2012.Improved Single Pass Algorithms for Resolution Proof Reduction.
    In: Automated Technology for Verification and Analysis. vol. 7561, 107–121.'
  mla: Gupta, Ashutosh. “Improved Single Pass Algorithms for Resolution Proof Reduction.”
    <i>Automated Technology for Verification and Analysis</i>, vol. 7561, Springer
    Berlin Heidelberg, 2012, pp. 107–21, doi:<a href="https://doi.org/10.1007/978-3-642-33386-6_10">10.1007/978-3-642-33386-6_10</a>.
  short: A. Gupta, in:, Automated Technology for Verification and Analysis, Springer
    Berlin Heidelberg, Berlin, Heidelberg, 2012, pp. 107–121.
conference:
  end_date: 2012-10-06
  location: Thiruvananthapuram, Kerala, India
  name: ATVA 2012
  start_date: 2012-10-03
date_created: 2018-12-18T13:01:46Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2023-09-05T14:15:29Z
ddc:
- '005'
department:
- _id: ToHe
doi: 10.1007/978-3-642-33386-6_10
ec_funded: 1
file:
- access_level: open_access
  checksum: 68415837a315de3cc4d120f6019d752c
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-18T13:07:35Z
  date_updated: 2020-07-14T12:47:10Z
  file_id: '5746'
  file_name: 2012_ATVA_Gupta.pdf
  file_size: 465502
  relation: main_file
file_date_updated: 2020-07-14T12:47:10Z
has_accepted_license: '1'
intvolume: '      7561'
language:
- iso: eng
oa: 1
oa_version: None
page: 107-121
place: Berlin, Heidelberg
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
publication: Automated Technology for Verification and Analysis
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783642333859'
  - '9783642333866'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Berlin Heidelberg
pubrep_id: '180'
quality_controlled: '1'
series_title: LNCS
status: public
title: Improved Single Pass Algorithms for Resolution Proof Reduction
type: book_chapter
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 7561
year: '2012'
...
---
_id: '5839'
abstract:
- lang: eng
  text: "Canny's edge detection algorithm is a classical and robust method for edge
    detection in gray-scale images. The two \r\nsignificant features of this method
    are introduction of NMS (Non-Maximum Suppression) and double thresholding of \r\nthe
    \ gradient  image.  Due  to  poor  illumination,  the  region  boundaries  in
    \ an  image  may  become  vague,  creating  \r\nuncertainties  in  the  gradient
    \ image.  In  this  paper,  we  have  proposed  an  algorithm  based  on  the
    \ concept  of  type-2  fuzzy  sets  to  handle  uncertainties  that  automatically
    \ selects  the  threshold  values  needed  to  segment  the  gradient image using
    classical Canny’s edge detection algorithm. The results show that our algorithm
    works significantly well on different benchmark images as well as medical images
    (hand radiography images). "
author:
- first_name: Ranita
  full_name: Biswas, Ranita
  id: 3C2B033E-F248-11E8-B48F-1D18A9856A87
  last_name: Biswas
  orcid: 0000-0002-5372-7890
- first_name: Jaya
  full_name: Sil, Jaya
  last_name: Sil
citation:
  ama: Biswas R, Sil J. An Improved Canny Edge Detection Algorithm Based on Type-2
    Fuzzy Sets. <i>Procedia Technology</i>. 2012;4:820-824. doi:<a href="https://doi.org/10.1016/j.protcy.2012.05.134">10.1016/j.protcy.2012.05.134</a>
  apa: Biswas, R., &#38; Sil, J. (2012). An Improved Canny Edge Detection Algorithm
    Based on Type-2 Fuzzy Sets. <i>Procedia Technology</i>. Elsevier. <a href="https://doi.org/10.1016/j.protcy.2012.05.134">https://doi.org/10.1016/j.protcy.2012.05.134</a>
  chicago: Biswas, Ranita, and Jaya Sil. “An Improved Canny Edge Detection Algorithm
    Based on Type-2 Fuzzy Sets.” <i>Procedia Technology</i>. Elsevier, 2012. <a href="https://doi.org/10.1016/j.protcy.2012.05.134">https://doi.org/10.1016/j.protcy.2012.05.134</a>.
  ieee: R. Biswas and J. Sil, “An Improved Canny Edge Detection Algorithm Based on
    Type-2 Fuzzy Sets,” <i>Procedia Technology</i>, vol. 4. Elsevier, pp. 820–824,
    2012.
  ista: Biswas R, Sil J. 2012. An Improved Canny Edge Detection Algorithm Based on
    Type-2 Fuzzy Sets. Procedia Technology. 4, 820–824.
  mla: Biswas, Ranita, and Jaya Sil. “An Improved Canny Edge Detection Algorithm Based
    on Type-2 Fuzzy Sets.” <i>Procedia Technology</i>, vol. 4, Elsevier, 2012, pp.
    820–24, doi:<a href="https://doi.org/10.1016/j.protcy.2012.05.134">10.1016/j.protcy.2012.05.134</a>.
  short: R. Biswas, J. Sil, Procedia Technology 4 (2012) 820–824.
date_created: 2019-01-17T11:54:21Z
date_published: 2012-05-01T00:00:00Z
date_updated: 2021-01-12T08:03:43Z
day: '01'
ddc:
- '000'
doi: 10.1016/j.protcy.2012.05.134
extern: '1'
file:
- access_level: open_access
  checksum: ba0185986b151d8c11201f48cd505ceb
  content_type: application/pdf
  creator: dernst
  date_created: 2019-01-21T07:28:06Z
  date_updated: 2020-07-14T12:47:12Z
  file_id: '5863'
  file_name: 2012_Procedia_Biswas.pdf
  file_size: 305426
  relation: main_file
file_date_updated: 2020-07-14T12:47:12Z
has_accepted_license: '1'
intvolume: '         4'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 820-824
publication: Procedia Technology
publication_identifier:
  issn:
  - 2212-0173
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: An Improved Canny Edge Detection Algorithm Based on Type-2 Fuzzy Sets
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 4
year: '2012'
...
---
_id: '596'
abstract:
- lang: eng
  text: The human Mediator complex controls RNA polymerase II (pol II) function in
    ways that remain incompletely understood. Activator-Mediator binding alters Mediator
    structure, and these activator-induced structural shifts appear to play key roles
    in regulating transcription. A recent cryo-electron microscopy (EM) analysis revealed
    that pol II adopted a stable orientation within a Mediator-pol II-TFIIF assembly
    in which Mediator was bound to the activation domain of viral protein 16 (VP16).
    Whereas TFIIF was shown to be important for orienting pol II within this assembly,
    the potential role of the activator was not assessed. To determine how activator
    binding might affect pol II orientation, we isolated human Mediator-pol II-TFIIF
    complexes in which Mediator was not bound to an activator. Cryo-EM analysis of
    this assembly, coupled with pol II crystal structure docking, revealed that pol
    II binds Mediator at the same general location; however, in contrast to VP16-bound
    Mediator, pol II does not appear to stably orient in the absence of an activator.
    Variability in pol II orientation might be important mechanistically, perhaps
    to enable sense and antisense transcription at human promoters. Because Mediator
    interacts extensively with pol II, these results suggest that Mediator structural
    shifts induced by activator binding help stably orient pol II prior to transcription
    initiation.
article_processing_charge: No
author:
- first_name: Carrie A
  full_name: Bernecky, Carrie A
  id: 2CB9DFE2-F248-11E8-B48F-1D18A9856A87
  last_name: Bernecky
  orcid: 0000-0003-0893-7036
- first_name: Dylan
  full_name: Taatjes, Dylan
  last_name: Taatjes
citation:
  ama: Bernecky C, Taatjes D. Activator-mediator binding stabilizes RNA polymerase
    II orientation within the human mediator-RNA polymerase II-TFIIF assembly. <i>Journal
    of Molecular Biology</i>. 2012;417(5):387-394. doi:<a href="https://doi.org/10.1016/j.jmb.2012.02.014">10.1016/j.jmb.2012.02.014</a>
  apa: Bernecky, C., &#38; Taatjes, D. (2012). Activator-mediator binding stabilizes
    RNA polymerase II orientation within the human mediator-RNA polymerase II-TFIIF
    assembly. <i>Journal of Molecular Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.jmb.2012.02.014">https://doi.org/10.1016/j.jmb.2012.02.014</a>
  chicago: Bernecky, Carrie, and Dylan Taatjes. “Activator-Mediator Binding Stabilizes
    RNA Polymerase II Orientation within the Human Mediator-RNA Polymerase II-TFIIF
    Assembly.” <i>Journal of Molecular Biology</i>. Elsevier, 2012. <a href="https://doi.org/10.1016/j.jmb.2012.02.014">https://doi.org/10.1016/j.jmb.2012.02.014</a>.
  ieee: C. Bernecky and D. Taatjes, “Activator-mediator binding stabilizes RNA polymerase
    II orientation within the human mediator-RNA polymerase II-TFIIF assembly,” <i>Journal
    of Molecular Biology</i>, vol. 417, no. 5. Elsevier, pp. 387–394, 2012.
  ista: Bernecky C, Taatjes D. 2012. Activator-mediator binding stabilizes RNA polymerase
    II orientation within the human mediator-RNA polymerase II-TFIIF assembly. Journal
    of Molecular Biology. 417(5), 387–394.
  mla: Bernecky, Carrie, and Dylan Taatjes. “Activator-Mediator Binding Stabilizes
    RNA Polymerase II Orientation within the Human Mediator-RNA Polymerase II-TFIIF
    Assembly.” <i>Journal of Molecular Biology</i>, vol. 417, no. 5, Elsevier, 2012,
    pp. 387–94, doi:<a href="https://doi.org/10.1016/j.jmb.2012.02.014">10.1016/j.jmb.2012.02.014</a>.
  short: C. Bernecky, D. Taatjes, Journal of Molecular Biology 417 (2012) 387–394.
date_created: 2018-12-11T11:47:24Z
date_published: 2012-04-13T00:00:00Z
date_updated: 2021-01-12T08:05:21Z
day: '13'
doi: 10.1016/j.jmb.2012.02.014
extern: '1'
intvolume: '       417'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4582759/
month: '04'
oa: 1
oa_version: None
page: 387 - 394
publication: Journal of Molecular Biology
publication_status: published
publisher: Elsevier
publist_id: '7208'
status: public
title: Activator-mediator binding stabilizes RNA polymerase II orientation within
  the human mediator-RNA polymerase II-TFIIF assembly
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 417
year: '2012'
...
---
_id: '6136'
abstract:
- lang: eng
  text: Tonic receptors convey stimulus duration and intensity and are implicated
    in homeostatic control. However, how tonic homeostatic signals are generated and
    how they reconfigure neural circuits and modify animal behavior is poorly understood.
    Here we show that Caenorhabditis elegans O2-sensing neurons are tonic receptors
    that continuously signal ambient [O2] to set the animal's behavioral state. Sustained
    signaling relied on a Ca2+ relay involving L-type voltage-gated Ca2+ channels,
    the ryanodine and the inositol-1,4,5-trisphosphate receptors. Tonic activity evoked
    continuous neuropeptide release, which helps elicit the enduring behavioral state
    associated with high [O2]. Sustained O2 receptor signaling was propagated to downstream
    neural circuits, including the hub interneuron RMG. O2 receptors evoked similar
    locomotory states at particular O2 concentrations, regardless of previous d[O2]/dt.
    However, a phasic component of the URX receptors' response to high d[O2]/dt, as
    well as tonic-to-phasic transformations in downstream interneurons, enabled transient
    reorientation movements shaped by d[O2]/dt. Our results highlight how tonic homeostatic
    signals can generate both transient and enduring behavioral change.
author:
- first_name: Karl Emanuel
  full_name: Busch, Karl Emanuel
  last_name: Busch
- first_name: Patrick
  full_name: Laurent, Patrick
  last_name: Laurent
- first_name: Zoltan
  full_name: Soltesz, Zoltan
  last_name: Soltesz
- first_name: Robin Joseph
  full_name: Murphy, Robin Joseph
  last_name: Murphy
- first_name: Olivier
  full_name: Faivre, Olivier
  last_name: Faivre
- first_name: Berthold
  full_name: Hedwig, Berthold
  last_name: Hedwig
- first_name: Martin
  full_name: Thomas, Martin
  last_name: Thomas
- first_name: Heather L
  full_name: Smith, Heather L
  last_name: Smith
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Busch KE, Laurent P, Soltesz Z, et al. Tonic signaling from O2 sensors sets
    neural circuit activity and behavioral state. <i>Nature Neuroscience</i>. 2012;15(4):581-591.
    doi:<a href="https://doi.org/10.1038/nn.3061">10.1038/nn.3061</a>
  apa: Busch, K. E., Laurent, P., Soltesz, Z., Murphy, R. J., Faivre, O., Hedwig,
    B., … de Bono, M. (2012). Tonic signaling from O2 sensors sets neural circuit
    activity and behavioral state. <i>Nature Neuroscience</i>. Springer Nature. <a
    href="https://doi.org/10.1038/nn.3061">https://doi.org/10.1038/nn.3061</a>
  chicago: Busch, Karl Emanuel, Patrick Laurent, Zoltan Soltesz, Robin Joseph Murphy,
    Olivier Faivre, Berthold Hedwig, Martin Thomas, Heather L Smith, and Mario de
    Bono. “Tonic Signaling from O2 Sensors Sets Neural Circuit Activity and Behavioral
    State.” <i>Nature Neuroscience</i>. Springer Nature, 2012. <a href="https://doi.org/10.1038/nn.3061">https://doi.org/10.1038/nn.3061</a>.
  ieee: K. E. Busch <i>et al.</i>, “Tonic signaling from O2 sensors sets neural circuit
    activity and behavioral state,” <i>Nature Neuroscience</i>, vol. 15, no. 4. Springer
    Nature, pp. 581–591, 2012.
  ista: Busch KE, Laurent P, Soltesz Z, Murphy RJ, Faivre O, Hedwig B, Thomas M, Smith
    HL, de Bono M. 2012. Tonic signaling from O2 sensors sets neural circuit activity
    and behavioral state. Nature Neuroscience. 15(4), 581–591.
  mla: Busch, Karl Emanuel, et al. “Tonic Signaling from O2 Sensors Sets Neural Circuit
    Activity and Behavioral State.” <i>Nature Neuroscience</i>, vol. 15, no. 4, Springer
    Nature, 2012, pp. 581–91, doi:<a href="https://doi.org/10.1038/nn.3061">10.1038/nn.3061</a>.
  short: K.E. Busch, P. Laurent, Z. Soltesz, R.J. Murphy, O. Faivre, B. Hedwig, M.
    Thomas, H.L. Smith, M. de Bono, Nature Neuroscience 15 (2012) 581–591.
date_created: 2019-03-20T14:23:30Z
date_published: 2012-03-04T00:00:00Z
date_updated: 2021-01-12T08:06:17Z
day: '04'
doi: 10.1038/nn.3061
extern: '1'
external_id:
  pmid:
  - '22388961'
intvolume: '        15'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3564487/
month: '03'
oa: 1
oa_version: Submitted Version
page: 581-591
pmid: 1
publication: Nature Neuroscience
publication_identifier:
  issn:
  - 1097-6256
  - 1546-1726
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Tonic signaling from O2 sensors sets neural circuit activity and behavioral
  state
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2012'
...
---
_id: '6588'
abstract:
- lang: eng
  text: First we note that the best polynomial approximation to vertical bar x vertical
    bar on the set, which consists of an interval on the positive half-axis and a
    point on the negative half-axis, can be given by means of the classical Chebyshev
    polynomials. Then we explore the cases when a solution of the related problem
    on two intervals can be given in elementary functions.
acknowledgement: "This work is supported by the Austrian Science Fund (FWF), Project
  P22025-N18.\r\n"
article_processing_charge: No
article_type: original
author:
- first_name: Florian
  full_name: Pausinger, Florian
  id: 2A77D7A2-F248-11E8-B48F-1D18A9856A87
  last_name: Pausinger
  orcid: 0000-0002-8379-3768
citation:
  ama: Pausinger F. Elementary solutions of the Bernstein problem on two intervals.
    <i>Journal of Mathematical Physics, Analysis, Geometry</i>. 2012;8(1):63-78.
  apa: Pausinger, F. (2012). Elementary solutions of the Bernstein problem on two
    intervals. <i>Journal of Mathematical Physics, Analysis, Geometry</i>. B. Verkin
    Institute for Low Temperature Physics and Engineering.
  chicago: Pausinger, Florian. “Elementary Solutions of the Bernstein Problem on Two
    Intervals.” <i>Journal of Mathematical Physics, Analysis, Geometry</i>. B. Verkin
    Institute for Low Temperature Physics and Engineering, 2012.
  ieee: F. Pausinger, “Elementary solutions of the Bernstein problem on two intervals,”
    <i>Journal of Mathematical Physics, Analysis, Geometry</i>, vol. 8, no. 1. B.
    Verkin Institute for Low Temperature Physics and Engineering, pp. 63–78, 2012.
  ista: Pausinger F. 2012. Elementary solutions of the Bernstein problem on two intervals.
    Journal of Mathematical Physics, Analysis, Geometry. 8(1), 63–78.
  mla: Pausinger, Florian. “Elementary Solutions of the Bernstein Problem on Two Intervals.”
    <i>Journal of Mathematical Physics, Analysis, Geometry</i>, vol. 8, no. 1, B.
    Verkin Institute for Low Temperature Physics and Engineering, 2012, pp. 63–78.
  short: F. Pausinger, Journal of Mathematical Physics, Analysis, Geometry 8 (2012)
    63–78.
date_created: 2019-06-27T08:16:56Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2023-10-16T09:41:31Z
day: '01'
department:
- _id: HeEd
external_id:
  isi:
  - '000301173600004'
intvolume: '         8'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://mi.mathnet.ru/eng/jmag525
month: '01'
oa: 1
oa_version: Published Version
page: 63-78
publication: Journal of Mathematical Physics, Analysis, Geometry
publication_identifier:
  issn:
  - 1812-9471
publication_status: published
publisher: B. Verkin Institute for Low Temperature Physics and Engineering
quality_controlled: '1'
scopus_import: '1'
status: public
title: Elementary solutions of the Bernstein problem on two intervals
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2012'
...
---
_id: '1471'
abstract:
- lang: eng
  text: 'Given a possibly reducible and non-reduced spectral cover π: X → C over a
    smooth projective complex curve C we determine the group of connected components
    of the Prym variety Prym(X/C). As an immediate application we show that the finite
    group of n-torsion points of the Jacobian of C acts trivially on the cohomology
    of the twisted SL n-Higgs moduli space up to the degree which is predicted by
    topological mirror symmetry. In particular this yields a new proof of a result
    of Harder-Narasimhan, showing that this finite group acts trivially on the cohomology
    of the twisted SL n stable bundle moduli space.'
author:
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
- first_name: Christian
  full_name: Pauly, Christian
  last_name: Pauly
citation:
  ama: Hausel T, Pauly C. Prym varieties of spectral covers. <i>Geometry and Topology</i>.
    2012;16(3):1609-1638. doi:<a href="https://doi.org/10.2140/gt.2012.16.1609">10.2140/gt.2012.16.1609</a>
  apa: Hausel, T., &#38; Pauly, C. (2012). Prym varieties of spectral covers. <i>Geometry
    and Topology</i>. University of Warwick. <a href="https://doi.org/10.2140/gt.2012.16.1609">https://doi.org/10.2140/gt.2012.16.1609</a>
  chicago: Hausel, Tamás, and Christian Pauly. “Prym Varieties of Spectral Covers.”
    <i>Geometry and Topology</i>. University of Warwick, 2012. <a href="https://doi.org/10.2140/gt.2012.16.1609">https://doi.org/10.2140/gt.2012.16.1609</a>.
  ieee: T. Hausel and C. Pauly, “Prym varieties of spectral covers,” <i>Geometry and
    Topology</i>, vol. 16, no. 3. University of Warwick, pp. 1609–1638, 2012.
  ista: Hausel T, Pauly C. 2012. Prym varieties of spectral covers. Geometry and Topology.
    16(3), 1609–1638.
  mla: Hausel, Tamás, and Christian Pauly. “Prym Varieties of Spectral Covers.” <i>Geometry
    and Topology</i>, vol. 16, no. 3, University of Warwick, 2012, pp. 1609–38, doi:<a
    href="https://doi.org/10.2140/gt.2012.16.1609">10.2140/gt.2012.16.1609</a>.
  short: T. Hausel, C. Pauly, Geometry and Topology 16 (2012) 1609–1638.
date_created: 2018-12-11T11:52:13Z
date_published: 2012-08-01T00:00:00Z
date_updated: 2021-01-12T06:50:58Z
day: '01'
doi: 10.2140/gt.2012.16.1609
extern: 1
intvolume: '        16'
issue: '3'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1012.4748
month: '08'
oa: 1
page: 1609 - 1638
publication: Geometry and Topology
publication_status: published
publisher: University of Warwick
publist_id: '5726'
quality_controlled: 0
status: public
title: Prym varieties of spectral covers
type: journal_article
volume: 16
year: '2012'
...
---
_id: '1472'
abstract:
- lang: eng
  text: For G = GL 2, PGL 2, SL 2 we prove that the perverse filtration associated
    with the Hitchin map on the rational cohomology of the moduli space of twisted
    G-Higgs bundles on a compact Riemann surface C agrees with the weight filtration
    on the rational cohomology of the twisted G character variety of C when the cohomologies
    are identified via non-Abelian Hodge theory. The proof is accomplished by means
    of a study of the topology of the Hitchin map over the locus of integral spectral
    curves.
acknowledgement: Mark Andrea A. de Cataldo was partially supported by N.S.A. and N.S.F.
  Tamás Hausel was supported by a Royal Society University Research Fellowship. Luca
  Migliorini was partially supported by PRIN 2007 project "Spazi di moduli e teoria
  di Lie"
author:
- first_name: Mark
  full_name: De Cataldo, Mark A
  last_name: De Cataldo
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
- first_name: Luca
  full_name: Migliorini, Luca
  last_name: Migliorini
citation:
  ama: 'De Cataldo M, Hausel T, Migliorini L. Topology of hitchin systems and Hodge
    theory of character varieties: The case A 1. <i>Annals of Mathematics</i>. 2012;175(3):1329-1407.
    doi:<a href="https://doi.org/10.4007/annals.2012.175.3.7">10.4007/annals.2012.175.3.7</a>'
  apa: 'De Cataldo, M., Hausel, T., &#38; Migliorini, L. (2012). Topology of hitchin
    systems and Hodge theory of character varieties: The case A 1. <i>Annals of Mathematics</i>.
    Princeton University Press. <a href="https://doi.org/10.4007/annals.2012.175.3.7">https://doi.org/10.4007/annals.2012.175.3.7</a>'
  chicago: 'De Cataldo, Mark, Tamás Hausel, and Luca Migliorini. “Topology of Hitchin
    Systems and Hodge Theory of Character Varieties: The Case A 1.” <i>Annals of Mathematics</i>.
    Princeton University Press, 2012. <a href="https://doi.org/10.4007/annals.2012.175.3.7">https://doi.org/10.4007/annals.2012.175.3.7</a>.'
  ieee: 'M. De Cataldo, T. Hausel, and L. Migliorini, “Topology of hitchin systems
    and Hodge theory of character varieties: The case A 1,” <i>Annals of Mathematics</i>,
    vol. 175, no. 3. Princeton University Press, pp. 1329–1407, 2012.'
  ista: 'De Cataldo M, Hausel T, Migliorini L. 2012. Topology of hitchin systems and
    Hodge theory of character varieties: The case A 1. Annals of Mathematics. 175(3),
    1329–1407.'
  mla: 'De Cataldo, Mark, et al. “Topology of Hitchin Systems and Hodge Theory of
    Character Varieties: The Case A 1.” <i>Annals of Mathematics</i>, vol. 175, no.
    3, Princeton University Press, 2012, pp. 1329–407, doi:<a href="https://doi.org/10.4007/annals.2012.175.3.7">10.4007/annals.2012.175.3.7</a>.'
  short: M. De Cataldo, T. Hausel, L. Migliorini, Annals of Mathematics 175 (2012)
    1329–1407.
date_created: 2018-12-11T11:52:13Z
date_published: 2012-05-01T00:00:00Z
date_updated: 2021-01-12T06:50:59Z
day: '01'
doi: 10.4007/annals.2012.175.3.7
extern: 1
intvolume: '       175'
issue: '3'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1004.1420
month: '05'
oa: 1
page: 1329 - 1407
publication: Annals of Mathematics
publication_status: published
publisher: Princeton University Press
publist_id: '5727'
quality_controlled: 0
status: public
title: 'Topology of hitchin systems and Hodge theory of character varieties: The case
  A 1'
type: journal_article
volume: 175
year: '2012'
...
---
_id: '13075'
abstract:
- lang: eng
  text: Little is known about the stability of trophic relationships in complex natural
    communities over evolutionary timescales. Here, we use sequence data from 18 nuclear
    loci to reconstruct and compare the intraspecific histories of major Pleistocene
    refugial populations in the Middle East, the Balkans and Iberia in a guild of
    four Chalcid parasitoids (Cecidostiba fungosa, C. semifascia, Hobbya stenonota
    and Mesopolobus amaenus) all attacking Cynipid oak galls. We develop a likelihood
    method to numerically estimate models of divergence between three populations
    from multilocus data. We investigate the power of this framework on simulated
    data, and - using triplet alignments of intronic loci - quantify the support for
    all possible divergence relationships between refugial populations in the four
    parasitoids. Although an East to West order of population divergence has highest
    support in all but one species, we cannot rule out alternative population tree
    topologies. Comparing the estimated times of population splits between species,
    we find that one species, M. amaenus, has a significantly older history than the
    rest of the guild and must have arrived in central Europe at least one glacial
    cycle prior to other guild members. This suggests that although all four species
    may share a common origin in the East, they expanded westwards into Europe at
    different times.
article_processing_charge: No
author:
- first_name: Konrad
  full_name: Lohse, Konrad
  last_name: Lohse
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
- first_name: Graham
  full_name: Stone, Graham
  last_name: Stone
- first_name: George
  full_name: Melika, George
  last_name: Melika
citation:
  ama: 'Lohse K, Barton NH, Stone G, Melika G. Data from: A likelihood-based comparison
    of population histories in a parasitoid guild. 2012. doi:<a href="https://doi.org/10.5061/DRYAD.0G0FS">10.5061/DRYAD.0G0FS</a>'
  apa: 'Lohse, K., Barton, N. H., Stone, G., &#38; Melika, G. (2012). Data from: A
    likelihood-based comparison of population histories in a parasitoid guild. Dryad.
    <a href="https://doi.org/10.5061/DRYAD.0G0FS">https://doi.org/10.5061/DRYAD.0G0FS</a>'
  chicago: 'Lohse, Konrad, Nicholas H Barton, Graham Stone, and George Melika. “Data
    from: A Likelihood-Based Comparison of Population Histories in a Parasitoid Guild.”
    Dryad, 2012. <a href="https://doi.org/10.5061/DRYAD.0G0FS">https://doi.org/10.5061/DRYAD.0G0FS</a>.'
  ieee: 'K. Lohse, N. H. Barton, G. Stone, and G. Melika, “Data from: A likelihood-based
    comparison of population histories in a parasitoid guild.” Dryad, 2012.'
  ista: 'Lohse K, Barton NH, Stone G, Melika G. 2012. Data from: A likelihood-based
    comparison of population histories in a parasitoid guild, Dryad, <a href="https://doi.org/10.5061/DRYAD.0G0FS">10.5061/DRYAD.0G0FS</a>.'
  mla: 'Lohse, Konrad, et al. <i>Data from: A Likelihood-Based Comparison of Population
    Histories in a Parasitoid Guild</i>. Dryad, 2012, doi:<a href="https://doi.org/10.5061/DRYAD.0G0FS">10.5061/DRYAD.0G0FS</a>.'
  short: K. Lohse, N.H. Barton, G. Stone, G. Melika, (2012).
date_created: 2023-05-23T17:01:02Z
date_published: 2012-06-08T00:00:00Z
date_updated: 2025-05-28T11:56:58Z
day: '08'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.5061/DRYAD.0G0FS
license: https://creativecommons.org/publicdomain/zero/1.0/
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.0g0fs
month: '06'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '2968'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: A likelihood-based comparison of population histories in a parasitoid
  guild'
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '13407'
abstract:
- lang: eng
  text: We show that diamagnetic particles can be remotely manipulated by a magnet
    by the reversible adsorption of dual-responsive, light-switchable/superparamagnetic
    nanoparticles down to their surface. Adsorption occurs upon exposure to UV light,
    and can be reversed thermally or by ambient light. The dynamic self-assembly of
    thin films of the dual-responsive nanoparticles induces attractive interactions
    between diamagnetic particles. We demonstrate that catalytic amounts of the dual-responsive
    nanoparticles are sufficient to magnetically guide and deliver the diamagnetic
    particles to desired locations, where they can then be released by disassembling
    the dynamic layers of superparamagnetic nanoparticles with visible light.
article_processing_charge: No
article_type: original
author:
- first_name: Olga
  full_name: Chovnik, Olga
  last_name: Chovnik
- first_name: Renata
  full_name: Balgley, Renata
  last_name: Balgley
- first_name: Joel R.
  full_name: Goldman, Joel R.
  last_name: Goldman
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Chovnik O, Balgley R, Goldman JR, Klajn R. Dynamically self-assembling carriers
    enable guiding of diamagnetic particles by weak magnets. <i>Journal of the American
    Chemical Society</i>. 2012;134(48):19564-19567. doi:<a href="https://doi.org/10.1021/ja309633v">10.1021/ja309633v</a>
  apa: Chovnik, O., Balgley, R., Goldman, J. R., &#38; Klajn, R. (2012). Dynamically
    self-assembling carriers enable guiding of diamagnetic particles by weak magnets.
    <i>Journal of the American Chemical Society</i>. American Chemical Society. <a
    href="https://doi.org/10.1021/ja309633v">https://doi.org/10.1021/ja309633v</a>
  chicago: Chovnik, Olga, Renata Balgley, Joel R. Goldman, and Rafal Klajn. “Dynamically
    Self-Assembling Carriers Enable Guiding of Diamagnetic Particles by Weak Magnets.”
    <i>Journal of the American Chemical Society</i>. American Chemical Society, 2012.
    <a href="https://doi.org/10.1021/ja309633v">https://doi.org/10.1021/ja309633v</a>.
  ieee: O. Chovnik, R. Balgley, J. R. Goldman, and R. Klajn, “Dynamically self-assembling
    carriers enable guiding of diamagnetic particles by weak magnets,” <i>Journal
    of the American Chemical Society</i>, vol. 134, no. 48. American Chemical Society,
    pp. 19564–19567, 2012.
  ista: Chovnik O, Balgley R, Goldman JR, Klajn R. 2012. Dynamically self-assembling
    carriers enable guiding of diamagnetic particles by weak magnets. Journal of the
    American Chemical Society. 134(48), 19564–19567.
  mla: Chovnik, Olga, et al. “Dynamically Self-Assembling Carriers Enable Guiding
    of Diamagnetic Particles by Weak Magnets.” <i>Journal of the American Chemical
    Society</i>, vol. 134, no. 48, American Chemical Society, 2012, pp. 19564–67,
    doi:<a href="https://doi.org/10.1021/ja309633v">10.1021/ja309633v</a>.
  short: O. Chovnik, R. Balgley, J.R. Goldman, R. Klajn, Journal of the American Chemical
    Society 134 (2012) 19564–19567.
date_created: 2023-08-01T09:47:42Z
date_published: 2012-11-26T00:00:00Z
date_updated: 2023-08-08T07:51:10Z
day: '26'
doi: 10.1021/ja309633v
extern: '1'
external_id:
  pmid:
  - '23181449'
intvolume: '       134'
issue: '48'
keyword:
- Colloid and Surface Chemistry
- Biochemistry
- General Chemistry
- Catalysis
language:
- iso: eng
month: '11'
oa_version: Published Version
page: 19564-19567
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
  eissn:
  - 1520-5126
  issn:
  - 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dynamically self-assembling carriers enable guiding of diamagnetic particles
  by weak magnets
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 134
year: '2012'
...
---
_id: '13408'
abstract:
- lang: eng
  text: Well-defined metallic nanobowls can be prepared by extending the concept of
    a protecting group to colloidal synthesis. Magnetic nanoparticles are employed
    as “protecting groups” during the galvanic replacement of silver with gold. The
    replacement reaction is accompanied by spontantous dissociation of the protecting
    groups, leaving behind metallic nanobowls.
article_processing_charge: No
article_type: original
author:
- first_name: Yonatan
  full_name: Ridelman, Yonatan
  last_name: Ridelman
- first_name: Gurvinder
  full_name: Singh, Gurvinder
  last_name: Singh
- first_name: Ronit
  full_name: Popovitz-Biro, Ronit
  last_name: Popovitz-Biro
- first_name: Sharon G.
  full_name: Wolf, Sharon G.
  last_name: Wolf
- first_name: Sanjib
  full_name: Das, Sanjib
  last_name: Das
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Ridelman Y, Singh G, Popovitz-Biro R, Wolf SG, Das S, Klajn R. Metallic nanobowls
    by galvanic replacement reaction on heterodimeric nanoparticles. <i>Small</i>.
    2012;8(5):654-660. doi:<a href="https://doi.org/10.1002/smll.201101882">10.1002/smll.201101882</a>
  apa: Ridelman, Y., Singh, G., Popovitz-Biro, R., Wolf, S. G., Das, S., &#38; Klajn,
    R. (2012). Metallic nanobowls by galvanic replacement reaction on heterodimeric
    nanoparticles. <i>Small</i>. Wiley. <a href="https://doi.org/10.1002/smll.201101882">https://doi.org/10.1002/smll.201101882</a>
  chicago: Ridelman, Yonatan, Gurvinder Singh, Ronit Popovitz-Biro, Sharon G. Wolf,
    Sanjib Das, and Rafal Klajn. “Metallic Nanobowls by Galvanic Replacement Reaction
    on Heterodimeric Nanoparticles.” <i>Small</i>. Wiley, 2012. <a href="https://doi.org/10.1002/smll.201101882">https://doi.org/10.1002/smll.201101882</a>.
  ieee: Y. Ridelman, G. Singh, R. Popovitz-Biro, S. G. Wolf, S. Das, and R. Klajn,
    “Metallic nanobowls by galvanic replacement reaction on heterodimeric nanoparticles,”
    <i>Small</i>, vol. 8, no. 5. Wiley, pp. 654–660, 2012.
  ista: Ridelman Y, Singh G, Popovitz-Biro R, Wolf SG, Das S, Klajn R. 2012. Metallic
    nanobowls by galvanic replacement reaction on heterodimeric nanoparticles. Small.
    8(5), 654–660.
  mla: Ridelman, Yonatan, et al. “Metallic Nanobowls by Galvanic Replacement Reaction
    on Heterodimeric Nanoparticles.” <i>Small</i>, vol. 8, no. 5, Wiley, 2012, pp.
    654–60, doi:<a href="https://doi.org/10.1002/smll.201101882">10.1002/smll.201101882</a>.
  short: Y. Ridelman, G. Singh, R. Popovitz-Biro, S.G. Wolf, S. Das, R. Klajn, Small
    8 (2012) 654–660.
date_created: 2023-08-01T09:47:55Z
date_published: 2012-03-12T00:00:00Z
date_updated: 2023-08-08T07:55:10Z
day: '12'
doi: 10.1002/smll.201101882
extern: '1'
external_id:
  pmid:
  - '22392681'
intvolume: '         8'
issue: '5'
keyword:
- Biomaterials
- Biotechnology
- General Materials Science
- General Chemistry
language:
- iso: eng
month: '03'
oa_version: None
page: 654-660
pmid: 1
publication: Small
publication_identifier:
  eissn:
  - 1613-6829
  issn:
  - 1613-6810
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Metallic nanobowls by galvanic replacement reaction on heterodimeric nanoparticles
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2012'
...
---
_id: '1384'
abstract:
- lang: eng
  text: 'Software model checking, as an undecidable problem, has three possible outcomes:
    (1) the program satisfies the specification, (2) the program does not satisfy
    the specification, and (3) the model checker fails. The third outcome usually
    manifests itself in a space-out, time-out, or one component of the verification
    tool giving up; in all of these failing cases, significant computation is performed
    by the verification tool before the failure, but no result is reported. We propose
    to reformulate the model-checking problem as follows, in order to have the verification
    tool report a summary of the performed work even in case of failure: given a program
    and a specification, the model checker returns a condition Ψ - usually a state
    predicate - such that the program satisfies the specification under the condition
    Ψ - that is, as long as the program does not leave the states in which Ψ is satisfied.
    In our experiments, we investigated as one major application of conditional model
    checking the sequential combination of model checkers with information passing.
    We give the condition that one model checker produces, as input to a second conditional
    model checker, such that the verification problem for the second is restricted
    to the part of the state space that is not covered by the condition, i.e., the
    second model checker works on the problems that the first model checker could
    not solve. Our experiments demonstrate that repeated application of conditional
    model checkers, passing information from one model checker to the next, can significantly
    improve the verification results and performance, i.e., we can now verify programs
    that we could not verify before.'
acknowledgement: This  research  was  supported  by  the  Canadian  NSERC grant   RGPIN   341819-07,    the   ERC   Advanced   Grant
  QUAREM, and the Austrian Science Fund NFN RiSE.
article_number: '57'
author:
- first_name: Dirk
  full_name: Beyer, Dirk
  last_name: Beyer
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Mehmet
  full_name: Keremoglu, Mehmet
  last_name: Keremoglu
- first_name: Philipp
  full_name: Wendler, Philipp
  last_name: Wendler
citation:
  ama: 'Beyer D, Henzinger TA, Keremoglu M, Wendler P. Conditional model checking:
    A technique to pass information between verifiers. In: <i>Proceedings of the ACM
    SIGSOFT 20th International Symposium on the Foundations of Software Engineering</i>.
    ACM; 2012. doi:<a href="https://doi.org/10.1145/2393596.2393664">10.1145/2393596.2393664</a>'
  apa: 'Beyer, D., Henzinger, T. A., Keremoglu, M., &#38; Wendler, P. (2012). Conditional
    model checking: A technique to pass information between verifiers. In <i>Proceedings
    of the ACM SIGSOFT 20th International Symposium on the Foundations of Software
    Engineering</i>. Cary, NC, USA: ACM. <a href="https://doi.org/10.1145/2393596.2393664">https://doi.org/10.1145/2393596.2393664</a>'
  chicago: 'Beyer, Dirk, Thomas A Henzinger, Mehmet Keremoglu, and Philipp Wendler.
    “Conditional Model Checking: A Technique to Pass Information between Verifiers.”
    In <i>Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations
    of Software Engineering</i>. ACM, 2012. <a href="https://doi.org/10.1145/2393596.2393664">https://doi.org/10.1145/2393596.2393664</a>.'
  ieee: 'D. Beyer, T. A. Henzinger, M. Keremoglu, and P. Wendler, “Conditional model
    checking: A technique to pass information between verifiers,” in <i>Proceedings
    of the ACM SIGSOFT 20th International Symposium on the Foundations of Software
    Engineering</i>, Cary, NC, USA, 2012.'
  ista: 'Beyer D, Henzinger TA, Keremoglu M, Wendler P. 2012. Conditional model checking:
    A technique to pass information between verifiers. Proceedings of the ACM SIGSOFT
    20th International Symposium on the Foundations of Software Engineering. FSE:
    Foundations of Software Engineering, 57.'
  mla: 'Beyer, Dirk, et al. “Conditional Model Checking: A Technique to Pass Information
    between Verifiers.” <i>Proceedings of the ACM SIGSOFT 20th International Symposium
    on the Foundations of Software Engineering</i>, 57, ACM, 2012, doi:<a href="https://doi.org/10.1145/2393596.2393664">10.1145/2393596.2393664</a>.'
  short: D. Beyer, T.A. Henzinger, M. Keremoglu, P. Wendler, in:, Proceedings of the
    ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering,
    ACM, 2012.
conference:
  end_date: 2012-11-16
  location: Cary, NC, USA
  name: 'FSE: Foundations of Software Engineering'
  start_date: 2012-11-11
date_created: 2018-12-11T11:51:42Z
date_published: 2012-11-01T00:00:00Z
date_updated: 2021-01-12T06:50:18Z
day: '01'
department:
- _id: ToHe
doi: 10.1145/2393596.2393664
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1109.6926
month: '11'
oa: 1
oa_version: Preprint
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication: Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations
  of Software Engineering
publication_status: published
publisher: ACM
publist_id: '5826'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Conditional model checking: A technique to pass information between verifiers'
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
