---
_id: '1987'
abstract:
- lang: eng
  text: |
    In the living cell, proteins are able to organize space much larger than their dimensions. In return, changes of intracellular space can influence biochemical reactions, allowing cells to sense their size and shape. Despite the possibility to reconstitute protein self-organization with only a few purified components, we still lack knowledge of how geometrical boundaries affect spatiotemporal protein patterns. Following a minimal systems approach, we used purified proteins and photolithographically patterned membranes to study the influence of spatial confinement on the self-organization of the Min system, a spatial regulator of bacterial cytokinesis, in vitro. We found that the emerging protein pattern responds even to the lateral, two-dimensional geometry of the membrane such that, as in the three-dimensional cell, Min protein waves travel along the longest axis of the membrane patch. This shows that for spatial sensing the Min system does not need to be enclosed in a three-dimensional compartment. Using a computational model we quantitatively analyzed our experimental findings and identified persistent binding of MinE to the membrane as requirement for the Min system to sense geometry. Our results give insight into the interplay between geometrical confinement and biochemical patterns emerging from a nonlinear reaction-diffusion system.
acknowledgement: 'This work was supported by the Max-Planck-Society (P.S. and M.L.)
  and by the German Research Foundation as part of the Research Training Group “Nano-
  and Biotechnologies for Electronic Device Packaging” (GRK 1401) (J.S.) and by the
  Leibniz-Award (P.S.). '
author:
- first_name: Jakob
  full_name: Schweizer, Jakob
  last_name: Schweizer
- first_name: Martin
  full_name: Martin Loose
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
- first_name: Mike
  full_name: 'Bonny, Mike '
  last_name: Bonny
- first_name: Karsten
  full_name: Kruse, Karsten
  last_name: Kruse
- first_name: Ingolf
  full_name: Mönch, Ingolf
  last_name: Mönch
- first_name: Petra
  full_name: 'Schwille, Petra '
  last_name: Schwille
citation:
  ama: Schweizer J, Loose M, Bonny M, Kruse K, Mönch I, Schwille P. Geometry sensing
    by self-organized protein patterns. <i>PNAS</i>. 2012;109(38):15283-15288. doi:<a
    href="https://doi.org/10.1073/pnas.1206953109">10.1073/pnas.1206953109</a>
  apa: Schweizer, J., Loose, M., Bonny, M., Kruse, K., Mönch, I., &#38; Schwille,
    P. (2012). Geometry sensing by self-organized protein patterns. <i>PNAS</i>. National
    Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1206953109">https://doi.org/10.1073/pnas.1206953109</a>
  chicago: Schweizer, Jakob, Martin Loose, Mike Bonny, Karsten Kruse, Ingolf Mönch,
    and Petra Schwille. “Geometry Sensing by Self-Organized Protein Patterns.” <i>PNAS</i>.
    National Academy of Sciences, 2012. <a href="https://doi.org/10.1073/pnas.1206953109">https://doi.org/10.1073/pnas.1206953109</a>.
  ieee: J. Schweizer, M. Loose, M. Bonny, K. Kruse, I. Mönch, and P. Schwille, “Geometry
    sensing by self-organized protein patterns,” <i>PNAS</i>, vol. 109, no. 38. National
    Academy of Sciences, pp. 15283–15288, 2012.
  ista: Schweizer J, Loose M, Bonny M, Kruse K, Mönch I, Schwille P. 2012. Geometry
    sensing by self-organized protein patterns. PNAS. 109(38), 15283–15288.
  mla: Schweizer, Jakob, et al. “Geometry Sensing by Self-Organized Protein Patterns.”
    <i>PNAS</i>, vol. 109, no. 38, National Academy of Sciences, 2012, pp. 15283–88,
    doi:<a href="https://doi.org/10.1073/pnas.1206953109">10.1073/pnas.1206953109</a>.
  short: J. Schweizer, M. Loose, M. Bonny, K. Kruse, I. Mönch, P. Schwille, PNAS 109
    (2012) 15283–15288.
date_created: 2018-12-11T11:55:04Z
date_published: 2012-09-18T00:00:00Z
date_updated: 2021-01-12T06:54:31Z
day: '18'
doi: 10.1073/pnas.1206953109
extern: 1
intvolume: '       109'
issue: '38'
month: '09'
page: 15283 - 15288
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '5096'
quality_controlled: 0
status: public
title: Geometry sensing by self-organized protein patterns
type: journal_article
volume: 109
year: '2012'
...
---
_id: '2048'
abstract:
- lang: eng
  text: Leakage resilient cryptography attempts to incorporate side-channel leakage
    into the black-box security model and designs cryptographic schemes that are provably
    secure within it. Informally, a scheme is leakage-resilient if it remains secure
    even if an adversary learns a bounded amount of arbitrary information about the
    schemes internal state. Unfortunately, most leakage resilient schemes are unnecessarily
    complicated in order to achieve strong provable security guarantees. As advocated
    by Yu et al. [CCS’10], this mostly is an artefact of the security proof and in
    practice much simpler construction may already suffice to protect against realistic
    side-channel attacks. In this paper, we show that indeed for simpler constructions
    leakage-resilience can be obtained when we aim for relaxed security notions where
    the leakage-functions and/or the inputs to the primitive are chosen non-adaptively.
    For example, we show that a three round Feistel network instantiated with a leakage
    resilient PRF yields a leakage resilient PRP if the inputs are chosen non-adaptively
    (This complements the result of Dodis and Pietrzak [CRYPTO’10] who show that if
    a adaptive queries are allowed, a superlogarithmic number of rounds is necessary.)
    We also show that a minor variation of the classical GGM construction gives a
    leakage resilient PRF if both, the leakage-function and the inputs, are chosen
    non-adaptively.
acknowledgement: "Sebastian Faust acknowledges support from the Danish National Research
  Foundation and The National Science Foundation of China (under the grant 61061130540)
  for the Sino-Danish Center for the Theory of Interactive Computation, within part
  of this work was performed; and from the CFEM research center, supported by the
  Danish Strategic Research Council. \r\nSupported by the European Research Council/ERC
  Starting Grant 259668-PSPC.\r\n"
alternative_title:
- LNCS
author:
- first_name: Sebastian
  full_name: Faust, Sebastian
  last_name: Faust
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
- first_name: Joachim
  full_name: Schipper, Joachim
  id: 7BE863D4-E9CF-11E9-9EDB-90527418172C
  last_name: Schipper
citation:
  ama: 'Faust S, Pietrzak KZ, Schipper J. Practical leakage-resilient symmetric cryptography.
    In: <i> Conference Proceedings CHES 2012</i>. Vol 7428. Springer; 2012:213-232.
    doi:<a href="https://doi.org/10.1007/978-3-642-33027-8_13">10.1007/978-3-642-33027-8_13</a>'
  apa: 'Faust, S., Pietrzak, K. Z., &#38; Schipper, J. (2012). Practical leakage-resilient
    symmetric cryptography. In <i> Conference proceedings CHES 2012</i> (Vol. 7428,
    pp. 213–232). Leuven, Belgium: Springer. <a href="https://doi.org/10.1007/978-3-642-33027-8_13">https://doi.org/10.1007/978-3-642-33027-8_13</a>'
  chicago: Faust, Sebastian, Krzysztof Z Pietrzak, and Joachim Schipper. “Practical
    Leakage-Resilient Symmetric Cryptography.” In <i> Conference Proceedings CHES
    2012</i>, 7428:213–32. Springer, 2012. <a href="https://doi.org/10.1007/978-3-642-33027-8_13">https://doi.org/10.1007/978-3-642-33027-8_13</a>.
  ieee: S. Faust, K. Z. Pietrzak, and J. Schipper, “Practical leakage-resilient symmetric
    cryptography,” in <i> Conference proceedings CHES 2012</i>, Leuven, Belgium, 2012,
    vol. 7428, pp. 213–232.
  ista: 'Faust S, Pietrzak KZ, Schipper J. 2012. Practical leakage-resilient symmetric
    cryptography.  Conference proceedings CHES 2012. CHES: Cryptographic Hardware
    and Embedded Systems, LNCS, vol. 7428, 213–232.'
  mla: Faust, Sebastian, et al. “Practical Leakage-Resilient Symmetric Cryptography.”
    <i> Conference Proceedings CHES 2012</i>, vol. 7428, Springer, 2012, pp. 213–32,
    doi:<a href="https://doi.org/10.1007/978-3-642-33027-8_13">10.1007/978-3-642-33027-8_13</a>.
  short: S. Faust, K.Z. Pietrzak, J. Schipper, in:,  Conference Proceedings CHES 2012,
    Springer, 2012, pp. 213–232.
conference:
  end_date: 2012-09-12
  location: Leuven, Belgium
  name: 'CHES: Cryptographic Hardware and Embedded Systems'
  start_date: 2012-09-09
date_created: 2018-12-11T11:55:25Z
date_published: 2012-09-01T00:00:00Z
date_updated: 2021-01-12T06:54:58Z
day: '01'
department:
- _id: KrPi
doi: 10.1007/978-3-642-33027-8_13
ec_funded: 1
intvolume: '      7428'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.iacr.org/archive/ches2012/74280211/74280211.pdf
month: '09'
oa: 1
oa_version: Preprint
page: 213 - 232
project:
- _id: 258C570E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '259668'
  name: Provable Security for Physical Cryptography
publication: ' Conference proceedings CHES 2012'
publication_status: published
publisher: Springer
publist_id: '5003'
quality_controlled: '1'
scopus_import: 1
status: public
title: Practical leakage-resilient symmetric cryptography
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7428
year: '2012'
...
---
_id: '2049'
abstract:
- lang: eng
  text: "We propose a new authentication protocol that is provably secure based on
    a ring variant of the learning parity with noise (LPN) problem. The protocol follows
    the design principle of the LPN-based protocol from Eurocrypt’11 (Kiltz et al.),
    and like it, is a two round protocol secure against active attacks. Moreover,
    our protocol has small communication complexity and a very small footprint which
    makes it applicable in scenarios that involve low-cost, resource-constrained devices.\r\n\r\nPerformance-wise,
    our protocol is more efficient than previous LPN-based schemes, such as the many
    variants of the Hopper-Blum (HB) protocol and the aforementioned protocol from
    Eurocrypt’11. Our implementation results show that it is even comparable to the
    standard challenge-and-response protocols based on the AES block-cipher. Our basic
    protocol is roughly 20 times slower than AES, but with the advantage of having
    10 times smaller code size. Furthermore, if a few hundred bytes of non-volatile
    memory are available to allow the storage of some off-line pre-computations, then
    the online phase of our protocols is only twice as slow as AES.\r\n"
acknowledgement: "Supported by the European Research Council / ERC Starting Grant
  (259668- PSPC)\r\nWe would like to thank the anonymous referees of this confer-
  ence and those of the ECRYPT Workshop on Lightweight Cryptography for very useful
  comments, and in particular for the suggestion that the scheme is somewhat vulnerable
  to a man-in-the-middle attack whenever an adversary observes two reader challenges
  that are the same. We hope that the attack we described in Appendix A corresponds
  to what the reviewer had in mind. We also thank Tanja Lange for pointing us to the
  pa- per of [Kir11] and for discussions of some of her recent work. "
alternative_title:
- LNCS
author:
- first_name: Stefan
  full_name: Heyse, Stefan
  last_name: Heyse
- first_name: Eike
  full_name: Kiltz, Eike
  last_name: Kiltz
- first_name: Vadim
  full_name: Lyubashevsky, Vadim
  last_name: Lyubashevsky
- first_name: Christof
  full_name: Paar, Christof
  last_name: Paar
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
citation:
  ama: 'Heyse S, Kiltz E, Lyubashevsky V, Paar C, Pietrzak KZ. Lapin: An efficient
    authentication protocol based on ring-LPN. In: <i> Conference Proceedings FSE
    2012</i>. Vol 7549. Springer; 2012:346-365. doi:<a href="https://doi.org/10.1007/978-3-642-34047-5_20">10.1007/978-3-642-34047-5_20</a>'
  apa: 'Heyse, S., Kiltz, E., Lyubashevsky, V., Paar, C., &#38; Pietrzak, K. Z. (2012).
    Lapin: An efficient authentication protocol based on ring-LPN. In <i> Conference
    proceedings FSE 2012</i> (Vol. 7549, pp. 346–365). Washington, DC, USA: Springer.
    <a href="https://doi.org/10.1007/978-3-642-34047-5_20">https://doi.org/10.1007/978-3-642-34047-5_20</a>'
  chicago: 'Heyse, Stefan, Eike Kiltz, Vadim Lyubashevsky, Christof Paar, and Krzysztof
    Z Pietrzak. “Lapin: An Efficient Authentication Protocol Based on Ring-LPN.” In
    <i> Conference Proceedings FSE 2012</i>, 7549:346–65. Springer, 2012. <a href="https://doi.org/10.1007/978-3-642-34047-5_20">https://doi.org/10.1007/978-3-642-34047-5_20</a>.'
  ieee: 'S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, and K. Z. Pietrzak, “Lapin:
    An efficient authentication protocol based on ring-LPN,” in <i> Conference proceedings
    FSE 2012</i>, Washington, DC, USA, 2012, vol. 7549, pp. 346–365.'
  ista: 'Heyse S, Kiltz E, Lyubashevsky V, Paar C, Pietrzak KZ. 2012. Lapin: An efficient
    authentication protocol based on ring-LPN.  Conference proceedings FSE 2012. FSE:
    Fast Software Encryption, LNCS, vol. 7549, 346–365.'
  mla: 'Heyse, Stefan, et al. “Lapin: An Efficient Authentication Protocol Based on
    Ring-LPN.” <i> Conference Proceedings FSE 2012</i>, vol. 7549, Springer, 2012,
    pp. 346–65, doi:<a href="https://doi.org/10.1007/978-3-642-34047-5_20">10.1007/978-3-642-34047-5_20</a>.'
  short: S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, K.Z. Pietrzak, in:,  Conference
    Proceedings FSE 2012, Springer, 2012, pp. 346–365.
conference:
  end_date: 2012-03-21
  location: Washington, DC, USA
  name: 'FSE: Fast Software Encryption'
  start_date: 2012-03-19
date_created: 2018-12-11T11:55:25Z
date_published: 2012-03-01T00:00:00Z
date_updated: 2021-01-12T06:54:58Z
day: '01'
department:
- _id: KrPi
doi: 10.1007/978-3-642-34047-5_20
ec_funded: 1
intvolume: '      7549'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.iacr.org/archive/fse2012/75490350/75490350.pdf
month: '03'
oa: 1
oa_version: Preprint
page: 346 - 365
project:
- _id: 258C570E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '259668'
  name: Provable Security for Physical Cryptography
publication: ' Conference proceedings FSE 2012'
publication_status: published
publisher: Springer
publist_id: '5002'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Lapin: An efficient authentication protocol based on ring-LPN'
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 7549
year: '2012'
...
---
_id: '2073'
abstract:
- lang: eng
  text: 'Background: Drosophila albomicans is a unique model organism for studying
    both sex chromosome and B chromosome evolution. A pair of its autosomes comprising
    roughly 40% of the whole genome has fused to the ancient X and Y chromosomes only
    about 0.12 million years ago, thereby creating the youngest and most gene-rich
    neo-sex system reported to date. This species also possesses recently derived
    B chromosomes that show non-Mendelian inheritance and significantly influence
    fertility.Methods: We sequenced male flies with B chromosomes at 124.5-fold genome
    coverage using next-generation sequencing. To characterize neo-Y specific changes
    and B chromosome sequences, we also sequenced inbred female flies derived from
    the same strain but without B''s at 28.5-fold.Results: We assembled a female genome
    and placed 53% of the sequence and 85% of the annotated proteins into specific
    chromosomes, by comparison with the 12 Drosophila genomes. Despite its very recent
    origin, the non-recombining neo-Y chromosome shows various signs of degeneration,
    including a significant enrichment of non-functional genes compared to the neo-X,
    and an excess of tandem duplications relative to other chromosomes. We also characterized
    a B-chromosome linked scaffold that contains an actively transcribed unit and
    shows sequence similarity to the subcentromeric regions of both the ancient X
    and the neo-X chromosome.Conclusions: Our results provide novel insights into
    the very early stages of sex chromosome evolution and B chromosome origination,
    and suggest an unprecedented connection between the births of these two systems
    in D. albomicans.'
author:
- first_name: Qi
  full_name: Zhou, Qi
  last_name: Zhou
- first_name: Hongmei
  full_name: Zhu, Hongmei
  last_name: Zhu
- first_name: Quanfei
  full_name: Huang, Quanfei
  last_name: Huang
- first_name: Li
  full_name: Zhao, Li
  last_name: Zhao
- first_name: Guo
  full_name: Zhang, Guo J
  last_name: Zhang
- first_name: Scott
  full_name: Roy, Scott W
  last_name: Roy
- first_name: Beatriz
  full_name: Beatriz Vicoso
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Zhaolin
  full_name: Xuan, Zhaolin
  last_name: Xuan
- first_name: Jue
  full_name: Ruan, Jue
  last_name: Ruan
- first_name: Yue
  full_name: Zhang, Yue
  last_name: Zhang
- first_name: Ruoping
  full_name: Zhao, Ruoping
  last_name: Zhao
- first_name: Chen
  full_name: Ye, Chen
  last_name: Ye
- first_name: Xiuqing
  full_name: Zhang, Xiuqing
  last_name: Zhang
- first_name: Jùn
  full_name: Wang, Jùn
  last_name: Wang
- first_name: Wen
  full_name: Wang, Wen
  last_name: Wang
- first_name: Doris
  full_name: Bachtrog, Doris
  last_name: Bachtrog
citation:
  ama: Zhou Q, Zhu H, Huang Q, et al. Deciphering neo-sex and B chromosome evolution
    by the draft genome of Drosophila albomicans. <i>BMC Genomics</i>. 2012;13(1).
    doi:<a href="https://doi.org/10.1186/1471-2164-13-109">10.1186/1471-2164-13-109</a>
  apa: Zhou, Q., Zhu, H., Huang, Q., Zhao, L., Zhang, G., Roy, S., … Bachtrog, D.
    (2012). Deciphering neo-sex and B chromosome evolution by the draft genome of
    Drosophila albomicans. <i>BMC Genomics</i>. BioMed Central. <a href="https://doi.org/10.1186/1471-2164-13-109">https://doi.org/10.1186/1471-2164-13-109</a>
  chicago: Zhou, Qi, Hongmei Zhu, Quanfei Huang, Li Zhao, Guo Zhang, Scott Roy, Beatriz
    Vicoso, et al. “Deciphering Neo-Sex and B Chromosome Evolution by the Draft Genome
    of Drosophila Albomicans.” <i>BMC Genomics</i>. BioMed Central, 2012. <a href="https://doi.org/10.1186/1471-2164-13-109">https://doi.org/10.1186/1471-2164-13-109</a>.
  ieee: Q. Zhou <i>et al.</i>, “Deciphering neo-sex and B chromosome evolution by
    the draft genome of Drosophila albomicans,” <i>BMC Genomics</i>, vol. 13, no.
    1. BioMed Central, 2012.
  ista: Zhou Q, Zhu H, Huang Q, Zhao L, Zhang G, Roy S, Vicoso B, Xuan Z, Ruan J,
    Zhang Y, Zhao R, Ye C, Zhang X, Wang J, Wang W, Bachtrog D. 2012. Deciphering
    neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans.
    BMC Genomics. 13(1).
  mla: Zhou, Qi, et al. “Deciphering Neo-Sex and B Chromosome Evolution by the Draft
    Genome of Drosophila Albomicans.” <i>BMC Genomics</i>, vol. 13, no. 1, BioMed
    Central, 2012, doi:<a href="https://doi.org/10.1186/1471-2164-13-109">10.1186/1471-2164-13-109</a>.
  short: Q. Zhou, H. Zhu, Q. Huang, L. Zhao, G. Zhang, S. Roy, B. Vicoso, Z. Xuan,
    J. Ruan, Y. Zhang, R. Zhao, C. Ye, X. Zhang, J. Wang, W. Wang, D. Bachtrog, BMC
    Genomics 13 (2012).
date_created: 2018-12-11T11:55:33Z
date_published: 2012-03-22T00:00:00Z
date_updated: 2021-01-12T06:55:08Z
day: '22'
doi: 10.1186/1471-2164-13-109
extern: 1
intvolume: '        13'
issue: '1'
license: https://creativecommons.org/licenses/by/4.0/
month: '03'
publication: BMC Genomics
publication_status: published
publisher: BioMed Central
publist_id: '4965'
quality_controlled: 0
status: public
title: Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila
  albomicans
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
volume: 13
year: '2012'
...
---
_id: '2079'
abstract:
- lang: eng
  text: We introduce an algorithm and representation for fabricating 3D shape abstractions
    using mutually intersecting planar cut-outs. The planes have prefabricated slits
    at their intersections and are assembled by sliding them together. Often such
    abstractions are used as a sculptural art form or in architecture and are colloquially
    called ‘cardboard sculptures’. Based on an analysis of construction rules, we
    propose an extended binary space partitioning tree as an efficient representation
    of such cardboard models which allows us to quickly evaluate the feasibility of
    newly added planar elements. The complexity of insertion order quickly increases
    with the number of planar elements and manual analysis becomes intractable. We
    provide tools for generating cardboard sculptures with guaranteed constructibility.
    In combination with a simple optimization and sampling strategy for new elements,
    planar shape abstraction models can be designed by iteratively adding elements.
    As an output, we obtain a fabrication plan that can be printed or sent to a laser
    cutter. We demonstrate the complete process by designing and fabricating cardboard
    models of various well-known 3D shapes.
author:
- first_name: Kristian
  full_name: Hildebrand, Kristian
  last_name: Hildebrand
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Marc
  full_name: Alexa, Marc
  last_name: Alexa
citation:
  ama: 'Hildebrand K, Bickel B, Alexa M. crdbrd: Shape fabrication by sliding planar
    slices. <i>Computer Graphics Forum</i>. 2012;31(2pt3):583-592. doi:<a href="https://doi.org/10.1111/j.1467-8659.2012.03037.x">10.1111/j.1467-8659.2012.03037.x</a>'
  apa: 'Hildebrand, K., Bickel, B., &#38; Alexa, M. (2012). crdbrd: Shape fabrication
    by sliding planar slices. <i>Computer Graphics Forum</i>. Wiley-Blackwell. <a
    href="https://doi.org/10.1111/j.1467-8659.2012.03037.x">https://doi.org/10.1111/j.1467-8659.2012.03037.x</a>'
  chicago: 'Hildebrand, Kristian, Bernd Bickel, and Marc Alexa. “Crdbrd: Shape Fabrication
    by Sliding Planar Slices.” <i>Computer Graphics Forum</i>. Wiley-Blackwell, 2012.
    <a href="https://doi.org/10.1111/j.1467-8659.2012.03037.x">https://doi.org/10.1111/j.1467-8659.2012.03037.x</a>.'
  ieee: 'K. Hildebrand, B. Bickel, and M. Alexa, “crdbrd: Shape fabrication by sliding
    planar slices,” <i>Computer Graphics Forum</i>, vol. 31, no. 2pt3. Wiley-Blackwell,
    pp. 583–592, 2012.'
  ista: 'Hildebrand K, Bickel B, Alexa M. 2012. crdbrd: Shape fabrication by sliding
    planar slices. Computer Graphics Forum. 31(2pt3), 583–592.'
  mla: 'Hildebrand, Kristian, et al. “Crdbrd: Shape Fabrication by Sliding Planar
    Slices.” <i>Computer Graphics Forum</i>, vol. 31, no. 2pt3, Wiley-Blackwell, 2012,
    pp. 583–92, doi:<a href="https://doi.org/10.1111/j.1467-8659.2012.03037.x">10.1111/j.1467-8659.2012.03037.x</a>.'
  short: K. Hildebrand, B. Bickel, M. Alexa, Computer Graphics Forum 31 (2012) 583–592.
date_created: 2018-12-11T11:55:35Z
date_published: 2012-05-01T00:00:00Z
date_updated: 2021-01-12T06:55:10Z
day: '01'
doi: 10.1111/j.1467-8659.2012.03037.x
extern: 1
intvolume: '        31'
issue: 2pt3
month: '05'
page: 583 - 592
publication: Computer Graphics Forum
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4959'
quality_controlled: 0
status: public
title: 'crdbrd: Shape fabrication by sliding planar slices'
type: journal_article
volume: 31
year: '2012'
...
---
_id: '2101'
abstract:
- lang: eng
  text: 'Articulated deformable characters are widespread in computer animation. Unfortunately,
    we lack methods for their automatic fabrication using modern additive manufacturing
    (AM) technologies. We propose a method that takes a skinned mesh as input, then
    estimates a fabricatable single-material model that approximates the 3D kinematics
    of the corresponding virtual articulated character in a piecewise linear manner.
    We first extract a set of potential joint locations. From this set, together with
    optional, user-specified range constraints, we then estimate mechanical friction
    joints that satisfy inter-joint non-penetration and other fabrication constraints.
    To avoid brittle joint designs, we place joint centers on an approximate medial
    axis representation of the input geometry, and maximize each joint''s minimal
    cross-sectional area. We provide several demonstrations, manufactured as single,
    assembled pieces using 3D printers. '
acknowledgement: This work was partially supported by NSF grant IIS-1116619. Doug
  James acknowledges support from Pixar and a fellowship from the John Simon Guggenheim
  Memorial Foundation
author:
- first_name: Moritz
  full_name: Bac̈her, Moritz
  last_name: Bac̈Her
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Doug
  full_name: James, Doug L
  last_name: James
- first_name: Hanspeter
  full_name: Pfister, Hanspeter
  last_name: Pfister
citation:
  ama: Bac̈Her M, Bickel B, James D, Pfister H. Fabricating articulated characters
    from skinned meshes. <i>ACM Transactions on Graphics</i>. 2012;31(4). doi:<a href="https://doi.org/10.1145/2185520.2185543">10.1145/2185520.2185543</a>
  apa: Bac̈Her, M., Bickel, B., James, D., &#38; Pfister, H. (2012). Fabricating articulated
    characters from skinned meshes. <i>ACM Transactions on Graphics</i>. ACM. <a href="https://doi.org/10.1145/2185520.2185543">https://doi.org/10.1145/2185520.2185543</a>
  chicago: Bac̈Her, Moritz, Bernd Bickel, Doug James, and Hanspeter Pfister. “Fabricating
    Articulated Characters from Skinned Meshes.” <i>ACM Transactions on Graphics</i>.
    ACM, 2012. <a href="https://doi.org/10.1145/2185520.2185543">https://doi.org/10.1145/2185520.2185543</a>.
  ieee: M. Bac̈Her, B. Bickel, D. James, and H. Pfister, “Fabricating articulated
    characters from skinned meshes,” <i>ACM Transactions on Graphics</i>, vol. 31,
    no. 4. ACM, 2012.
  ista: Bac̈Her M, Bickel B, James D, Pfister H. 2012. Fabricating articulated characters
    from skinned meshes. ACM Transactions on Graphics. 31(4).
  mla: Bac̈Her, Moritz, et al. “Fabricating Articulated Characters from Skinned Meshes.”
    <i>ACM Transactions on Graphics</i>, vol. 31, no. 4, ACM, 2012, doi:<a href="https://doi.org/10.1145/2185520.2185543">10.1145/2185520.2185543</a>.
  short: M. Bac̈Her, B. Bickel, D. James, H. Pfister, ACM Transactions on Graphics
    31 (2012).
date_created: 2018-12-11T11:55:43Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T06:55:19Z
day: '01'
doi: 10.1145/2185520.2185543
extern: 1
intvolume: '        31'
issue: '4'
month: '01'
publication: ACM Transactions on Graphics
publication_status: published
publisher: ACM
publist_id: '4933'
quality_controlled: 0
status: public
title: Fabricating articulated characters from skinned meshes
type: journal_article
volume: 31
year: '2012'
...
---
_id: '2102'
abstract:
- lang: eng
  text: 'We propose a complete process for designing, simulating, and fabricating
    synthetic skin for an animatronics character that mimics the face of a given subject
    and its expressions. The process starts with measuring the elastic properties
    of a material used to manufacture synthetic soft tissue. Given these measurements
    we use physicsbased simulation to predict the behavior of a face when it is driven
    by the underlying robotic actuation. Next, we capture 3D facial expressions for
    a given target subject. As the key component of our process, we present a novel
    optimization scheme that determines the shape of the synthetic skin as well as
    the actuation parameters that provide the best match to the target expressions.
    We demonstrate this computational skin design by physically cloning a real human
    face onto an animatronics figure. '
acknowledgement: This work was supported in part by the NCCR Co-Me of the Swiss NSF
author:
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Peter
  full_name: Kaufmann, Peter
  last_name: Kaufmann
- first_name: Mélina
  full_name: Skouras, Mélina
  last_name: Skouras
- first_name: Bernhard
  full_name: Thomaszewski, Bernhard
  last_name: Thomaszewski
- first_name: Derek
  full_name: Bradley, Derek J
  last_name: Bradley
- first_name: Thabo
  full_name: Beeler, Thabo
  last_name: Beeler
- first_name: Philip
  full_name: Jackson, Philip V
  last_name: Jackson
- first_name: Steve
  full_name: Marschner, Steve
  last_name: Marschner
- first_name: Wojciech
  full_name: Matusik, Wojciech
  last_name: Matusik
- first_name: Markus
  full_name: Groß, Markus S
  last_name: Groß
citation:
  ama: Bickel B, Kaufmann P, Skouras M, et al. Physical face cloning. <i>ACM Transactions
    on Graphics</i>. 2012;31(4). doi:<a href="https://doi.org/10.1145/2185520.2185614">10.1145/2185520.2185614</a>
  apa: Bickel, B., Kaufmann, P., Skouras, M., Thomaszewski, B., Bradley, D., Beeler,
    T., … Groß, M. (2012). Physical face cloning. <i>ACM Transactions on Graphics</i>.
    ACM. <a href="https://doi.org/10.1145/2185520.2185614">https://doi.org/10.1145/2185520.2185614</a>
  chicago: Bickel, Bernd, Peter Kaufmann, Mélina Skouras, Bernhard Thomaszewski, Derek
    Bradley, Thabo Beeler, Philip Jackson, Steve Marschner, Wojciech Matusik, and
    Markus Groß. “Physical Face Cloning.” <i>ACM Transactions on Graphics</i>. ACM,
    2012. <a href="https://doi.org/10.1145/2185520.2185614">https://doi.org/10.1145/2185520.2185614</a>.
  ieee: B. Bickel <i>et al.</i>, “Physical face cloning,” <i>ACM Transactions on Graphics</i>,
    vol. 31, no. 4. ACM, 2012.
  ista: Bickel B, Kaufmann P, Skouras M, Thomaszewski B, Bradley D, Beeler T, Jackson
    P, Marschner S, Matusik W, Groß M. 2012. Physical face cloning. ACM Transactions
    on Graphics. 31(4).
  mla: Bickel, Bernd, et al. “Physical Face Cloning.” <i>ACM Transactions on Graphics</i>,
    vol. 31, no. 4, ACM, 2012, doi:<a href="https://doi.org/10.1145/2185520.2185614">10.1145/2185520.2185614</a>.
  short: B. Bickel, P. Kaufmann, M. Skouras, B. Thomaszewski, D. Bradley, T. Beeler,
    P. Jackson, S. Marschner, W. Matusik, M. Groß, ACM Transactions on Graphics 31
    (2012).
date_created: 2018-12-11T11:55:43Z
date_published: 2012-07-04T00:00:00Z
date_updated: 2021-01-12T06:55:19Z
day: '04'
doi: 10.1145/2185520.2185614
extern: 1
intvolume: '        31'
issue: '4'
month: '07'
publication: ACM Transactions on Graphics
publication_status: published
publisher: ACM
publist_id: '4931'
quality_controlled: 0
status: public
title: Physical face cloning
type: journal_article
volume: 31
year: '2012'
...
---
_id: '2103'
abstract:
- lang: eng
  text: Although facial hair plays an important role in individual expression, facial-hair
    reconstruction is not addressed by current facecapture systems. Our research addresses
    this limitation with an algorithm that treats hair and skin surface capture together
    in a coupled fashion so that a high-quality representation of hair fibers as well
    as the underlying skin surface can be reconstructed. We propose a passive, camera-based
    system that is robust against arbitrary motion since all data is acquired within
    the time period of a single exposure. Our reconstruction algorithm detects and
    traces hairs in the captured images and reconstructs them in 3D using a multiview
    stereo approach. Our coupled skin-reconstruction algorithm uses information about
    the detected hairs to deliver a skin surface that lies underneath all hairs irrespective
    of occlusions. In dense regions like eyebrows, we employ a hair-synthesis method
    to create hair fibers that plausibly match the image data. We demonstrate our
    scanning system on a number of individuals and show that it can successfully reconstruct
    a variety of facial-hair styles together with the underlying skin surface.
author:
- first_name: Thabo
  full_name: Beeler, Thabo
  last_name: Beeler
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Gioacchino
  full_name: Noris, Gioacchino
  last_name: Noris
- first_name: Paul
  full_name: Beardsley, Paul A
  last_name: Beardsley
- first_name: Steve
  full_name: Marschner, Steve
  last_name: Marschner
- first_name: Robert
  full_name: Sumner, Robert W
  last_name: Sumner
- first_name: Markus
  full_name: Groß, Markus S
  last_name: Groß
citation:
  ama: Beeler T, Bickel B, Noris G, et al. Coupled 3D reconstruction of sparse facial
    hair and skin. <i>ACM Transactions on Graphics</i>. 2012;31(4). doi:<a href="https://doi.org/10.1145/2185520.2185613">10.1145/2185520.2185613</a>
  apa: Beeler, T., Bickel, B., Noris, G., Beardsley, P., Marschner, S., Sumner, R.,
    &#38; Groß, M. (2012). Coupled 3D reconstruction of sparse facial hair and skin.
    <i>ACM Transactions on Graphics</i>. ACM. <a href="https://doi.org/10.1145/2185520.2185613">https://doi.org/10.1145/2185520.2185613</a>
  chicago: Beeler, Thabo, Bernd Bickel, Gioacchino Noris, Paul Beardsley, Steve Marschner,
    Robert Sumner, and Markus Groß. “Coupled 3D Reconstruction of Sparse Facial Hair
    and Skin.” <i>ACM Transactions on Graphics</i>. ACM, 2012. <a href="https://doi.org/10.1145/2185520.2185613">https://doi.org/10.1145/2185520.2185613</a>.
  ieee: T. Beeler <i>et al.</i>, “Coupled 3D reconstruction of sparse facial hair
    and skin,” <i>ACM Transactions on Graphics</i>, vol. 31, no. 4. ACM, 2012.
  ista: Beeler T, Bickel B, Noris G, Beardsley P, Marschner S, Sumner R, Groß M. 2012.
    Coupled 3D reconstruction of sparse facial hair and skin. ACM Transactions on
    Graphics. 31(4).
  mla: Beeler, Thabo, et al. “Coupled 3D Reconstruction of Sparse Facial Hair and
    Skin.” <i>ACM Transactions on Graphics</i>, vol. 31, no. 4, ACM, 2012, doi:<a
    href="https://doi.org/10.1145/2185520.2185613">10.1145/2185520.2185613</a>.
  short: T. Beeler, B. Bickel, G. Noris, P. Beardsley, S. Marschner, R. Sumner, M.
    Groß, ACM Transactions on Graphics 31 (2012).
date_created: 2018-12-11T11:55:44Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T06:55:20Z
day: '01'
doi: 10.1145/2185520.2185613
extern: 1
intvolume: '        31'
issue: '4'
month: '01'
publication: ACM Transactions on Graphics
publication_status: published
publisher: ACM
publist_id: '4932'
quality_controlled: 0
status: public
title: Coupled 3D reconstruction of sparse facial hair and skin
type: journal_article
volume: 31
year: '2012'
...
---
_id: '2104'
abstract:
- lang: eng
  text: 'In recent years, various methods have been introduced to exploit pre-recorded
    data to improve the performance and/or realism of dynamic deformations, but their
    differences and similarities have not been adequately analyzed or discussed. So
    far, the proposed methods have been explored mainly in the research context. They
    have not been adopted by the computer graphics industry. This course bridges the
    gap between research labs and industry to present a unifying theory and understanding
    of data-driven methods for dynamic deformations that may inspire development of
    novel solutions. It focuses on application of data-driven methods to three areas
    of computer animation: dynamic deformation of faces, soft volumetric tissue, and
    cloth. And it describes how to approach these challenges in a data-driven manner,
    classifies the various methods, and demonstrates how data-driven methods can work
    in other settings. '
author:
- first_name: Miguel
  full_name: Otaduy, Miguel A
  last_name: Otaduy
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Derek
  full_name: Bradley, Derek J
  last_name: Bradley
- first_name: Huamin
  full_name: Wang, Huamin
  last_name: Wang
citation:
  ama: 'Otaduy M, Bickel B, Bradley D, Wang H. Data-driven simulation methods in computer
    graphics: Cloth, tissue and faces. In: ACM; 2012. doi:<a href="https://doi.org/10.1145/2343483.2343495">10.1145/2343483.2343495</a>'
  apa: 'Otaduy, M., Bickel, B., Bradley, D., &#38; Wang, H. (2012). Data-driven simulation
    methods in computer graphics: Cloth, tissue and faces. Presented at the SIGGRAPH:
    Special Interest Group on Computer Graphics and Interactive Techniques, ACM. <a
    href="https://doi.org/10.1145/2343483.2343495">https://doi.org/10.1145/2343483.2343495</a>'
  chicago: 'Otaduy, Miguel, Bernd Bickel, Derek Bradley, and Huamin Wang. “Data-Driven
    Simulation Methods in Computer Graphics: Cloth, Tissue and Faces.” ACM, 2012.
    <a href="https://doi.org/10.1145/2343483.2343495">https://doi.org/10.1145/2343483.2343495</a>.'
  ieee: 'M. Otaduy, B. Bickel, D. Bradley, and H. Wang, “Data-driven simulation methods
    in computer graphics: Cloth, tissue and faces,” presented at the SIGGRAPH: Special
    Interest Group on Computer Graphics and Interactive Techniques, 2012.'
  ista: 'Otaduy M, Bickel B, Bradley D, Wang H. 2012. Data-driven simulation methods
    in computer graphics: Cloth, tissue and faces. SIGGRAPH: Special Interest Group
    on Computer Graphics and Interactive Techniques.'
  mla: 'Otaduy, Miguel, et al. <i>Data-Driven Simulation Methods in Computer Graphics:
    Cloth, Tissue and Faces</i>. ACM, 2012, doi:<a href="https://doi.org/10.1145/2343483.2343495">10.1145/2343483.2343495</a>.'
  short: M. Otaduy, B. Bickel, D. Bradley, H. Wang, in:, ACM, 2012.
conference:
  name: 'SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques'
date_created: 2018-12-11T11:55:44Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T06:55:20Z
day: '01'
doi: 10.1145/2343483.2343495
extern: 1
month: '01'
publication_status: published
publisher: ACM
publist_id: '4930'
quality_controlled: 0
status: public
title: 'Data-driven simulation methods in computer graphics: Cloth, tissue and faces'
type: conference
year: '2012'
...
---
_id: '2105'
acknowledgement: Mélina Skouras was partially supported by the NCCR Co-Me of the Swiss
  National Science Foundation.
author:
- first_name: Mélina
  full_name: Skouras, Mélina
  last_name: Skouras
- first_name: Bernhard
  full_name: Thomaszewski, Bernhard
  last_name: Thomaszewski
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Markus
  full_name: Groß, Markus S
  last_name: Groß
citation:
  ama: 'Skouras M, Thomaszewski B, Bickel B, Groß M. Computational design of rubber
    balloons. In: Vol 31. Wiley-Blackwell; 2012:835-844. doi:<a href="https://doi.org/10.1111/j.1467-8659.2012.03064.x">10.1111/j.1467-8659.2012.03064.x</a>'
  apa: 'Skouras, M., Thomaszewski, B., Bickel, B., &#38; Groß, M. (2012). Computational
    design of rubber balloons (Vol. 31, pp. 835–844). Presented at the EUROGRAPHICS:
    European Association for Computer Graphics, Wiley-Blackwell. <a href="https://doi.org/10.1111/j.1467-8659.2012.03064.x">https://doi.org/10.1111/j.1467-8659.2012.03064.x</a>'
  chicago: Skouras, Mélina, Bernhard Thomaszewski, Bernd Bickel, and Markus Groß.
    “Computational Design of Rubber Balloons,” 31:835–44. Wiley-Blackwell, 2012. <a
    href="https://doi.org/10.1111/j.1467-8659.2012.03064.x">https://doi.org/10.1111/j.1467-8659.2012.03064.x</a>.
  ieee: 'M. Skouras, B. Thomaszewski, B. Bickel, and M. Groß, “Computational design
    of rubber balloons,” presented at the EUROGRAPHICS: European Association for Computer
    Graphics, 2012, vol. 31, no. 2, pp. 835–844.'
  ista: 'Skouras M, Thomaszewski B, Bickel B, Groß M. 2012. Computational design of
    rubber balloons. EUROGRAPHICS: European Association for Computer Graphics vol.
    31, 835–844.'
  mla: Skouras, Mélina, et al. <i>Computational Design of Rubber Balloons</i>. Vol.
    31, no. 2, Wiley-Blackwell, 2012, pp. 835–44, doi:<a href="https://doi.org/10.1111/j.1467-8659.2012.03064.x">10.1111/j.1467-8659.2012.03064.x</a>.
  short: M. Skouras, B. Thomaszewski, B. Bickel, M. Groß, in:, Wiley-Blackwell, 2012,
    pp. 835–844.
conference:
  name: 'EUROGRAPHICS: European Association for Computer Graphics'
date_created: 2018-12-11T11:55:45Z
date_published: 2012-05-01T00:00:00Z
date_updated: 2021-01-12T06:55:20Z
day: '01'
doi: 10.1111/j.1467-8659.2012.03064.x
extern: 1
intvolume: '        31'
issue: '2'
month: '05'
page: 835 - 844
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4928'
quality_controlled: 0
status: public
title: Computational design of rubber balloons
type: conference
volume: 31
year: '2012'
...
---
_id: '2106'
abstract:
- lang: eng
  text: Progress in cloth simulation for computer animation and apparel design has
    led to a multitude of deformation models, each with its own way of relating geometry,
    deformation, and forces. As simulators improve, differences between these models
    become more important, but it is difficult to choose a model and a set of parameters
    to match a given real material simply by looking at simulation results. This paper
    provides measurement and fitting methods that allow nonlinear models to be fit
    to the observed deformation of a particular cloth sample. Unlike standard textile
    testing, our system measures complex 3D deformations of a sheet of cloth, not
    just one-dimensional force-displacement curves, so it works under a wider range
    of deformation conditions. The fitted models are then evaluated by comparison
    to measured deformations with motions very different from those used for fitting.
acknowledgement: This work was funded in part by the Spanish Ministry of Science and
  Innovation, project TIN2009-07942, and by the European Research Council, project
  ERC-2011-StG-280135 Animetrics.
author:
- first_name: Eder
  full_name: Miguel, Eder
  last_name: Miguel
- first_name: Derek
  full_name: Bradley, Derek J
  last_name: Bradley
- first_name: Bernhard
  full_name: Thomaszewski, Bernhard
  last_name: Thomaszewski
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Wojciech
  full_name: Matusik, Wojciech
  last_name: Matusik
- first_name: Miguel
  full_name: Otaduy, Miguel A
  last_name: Otaduy
- first_name: Steve
  full_name: Marschner, Steve
  last_name: Marschner
citation:
  ama: 'Miguel E, Bradley D, Thomaszewski B, et al. Data-driven estimation of cloth
    simulation models. In: Vol 31. Wiley-Blackwell; 2012:519-528. doi:<a href="https://doi.org/10.1111/j.1467-8659.2012.03031.x">10.1111/j.1467-8659.2012.03031.x</a>'
  apa: Miguel, E., Bradley, D., Thomaszewski, B., Bickel, B., Matusik, W., Otaduy,
    M., &#38; Marschner, S. (2012). Data-driven estimation of cloth simulation models
    (Vol. 31, pp. 519–528). Presented at the Computer Graphics Forum, Wiley-Blackwell.
    <a href="https://doi.org/10.1111/j.1467-8659.2012.03031.x">https://doi.org/10.1111/j.1467-8659.2012.03031.x</a>
  chicago: Miguel, Eder, Derek Bradley, Bernhard Thomaszewski, Bernd Bickel, Wojciech
    Matusik, Miguel Otaduy, and Steve Marschner. “Data-Driven Estimation of Cloth
    Simulation Models,” 31:519–28. Wiley-Blackwell, 2012. <a href="https://doi.org/10.1111/j.1467-8659.2012.03031.x">https://doi.org/10.1111/j.1467-8659.2012.03031.x</a>.
  ieee: E. Miguel <i>et al.</i>, “Data-driven estimation of cloth simulation models,”
    presented at the Computer Graphics Forum, 2012, vol. 31, no. 2, pp. 519–528.
  ista: Miguel E, Bradley D, Thomaszewski B, Bickel B, Matusik W, Otaduy M, Marschner
    S. 2012. Data-driven estimation of cloth simulation models. Computer Graphics
    Forum vol. 31, 519–528.
  mla: Miguel, Eder, et al. <i>Data-Driven Estimation of Cloth Simulation Models</i>.
    Vol. 31, no. 2, Wiley-Blackwell, 2012, pp. 519–28, doi:<a href="https://doi.org/10.1111/j.1467-8659.2012.03031.x">10.1111/j.1467-8659.2012.03031.x</a>.
  short: E. Miguel, D. Bradley, B. Thomaszewski, B. Bickel, W. Matusik, M. Otaduy,
    S. Marschner, in:, Wiley-Blackwell, 2012, pp. 519–528.
conference:
  name: Computer Graphics Forum
date_created: 2018-12-11T11:55:45Z
date_published: 2012-05-01T00:00:00Z
date_updated: 2021-01-12T06:55:21Z
day: '01'
doi: 10.1111/j.1467-8659.2012.03031.x
extern: 1
intvolume: '        31'
issue: '2'
month: '05'
page: 519 - 528
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4929'
quality_controlled: 0
status: public
title: Data-driven estimation of cloth simulation models
type: conference
volume: 31
year: '2012'
...
---
_id: '2125'
abstract:
- lang: eng
  text: We consider a class of stochastic PDEs of Burgers type in spatial dimension
    1, driven by space–time white noise. Even though it is well known that these equations
    are well posed, it turns out that if one performs a spatial discretization of
    the nonlinearity in the “wrong” way, then the sequence of approximate equations
    does converge to a limit, but this limit exhibits an additional correction term.
    This correction term is proportional to the local quadratic cross-variation (in
    space) of the gradient of the conserved quantity with the solution itself. This
    can be understood as a consequence of the fact that for any fixed time, the law
    of the solution is locally equivalent to Wiener measure, where space plays the
    role of time. In this sense, the correction term is similar to the usual Itô–Stratonovich
    correction term that arises when one considers different temporal discretizations
    of stochastic ODEs.
acknowledgement: Supported by Rubicon Grant 680-50-0901 of the Netherlands Organisation
  for Scientific Research (NWO). Supported by the EPSRC Grants EP/E002269/1 and EP/D071593/1,
  a Wolfson Research Merit Award of the Royal Society and a Philip Leverhulme prize
  of the Lev
author:
- first_name: Martin
  full_name: Hairer, Martin M
  last_name: Hairer
- first_name: Jan
  full_name: Jan Maas
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
citation:
  ama: Hairer M, Maas J. A spatial version of the Itô-Stratonovich correction. <i>Annals
    of Probability</i>. 2012;40(4):1675-1714. doi:<a href="https://doi.org/10.1214/11-AOP662">10.1214/11-AOP662</a>
  apa: Hairer, M., &#38; Maas, J. (2012). A spatial version of the Itô-Stratonovich
    correction. <i>Annals of Probability</i>. Institute of Mathematical Statistics.
    <a href="https://doi.org/10.1214/11-AOP662">https://doi.org/10.1214/11-AOP662</a>
  chicago: Hairer, Martin, and Jan Maas. “A Spatial Version of the Itô-Stratonovich
    Correction.” <i>Annals of Probability</i>. Institute of Mathematical Statistics,
    2012. <a href="https://doi.org/10.1214/11-AOP662">https://doi.org/10.1214/11-AOP662</a>.
  ieee: M. Hairer and J. Maas, “A spatial version of the Itô-Stratonovich correction,”
    <i>Annals of Probability</i>, vol. 40, no. 4. Institute of Mathematical Statistics,
    pp. 1675–1714, 2012.
  ista: Hairer M, Maas J. 2012. A spatial version of the Itô-Stratonovich correction.
    Annals of Probability. 40(4), 1675–1714.
  mla: Hairer, Martin, and Jan Maas. “A Spatial Version of the Itô-Stratonovich Correction.”
    <i>Annals of Probability</i>, vol. 40, no. 4, Institute of Mathematical Statistics,
    2012, pp. 1675–714, doi:<a href="https://doi.org/10.1214/11-AOP662">10.1214/11-AOP662</a>.
  short: M. Hairer, J. Maas, Annals of Probability 40 (2012) 1675–1714.
date_created: 2018-12-11T11:55:51Z
date_published: 2012-07-01T00:00:00Z
date_updated: 2021-01-12T06:55:27Z
day: '01'
doi: 10.1214/11-AOP662
extern: 1
intvolume: '        40'
issue: '4'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1011.0966
month: '07'
oa: 1
page: 1675 - 1714
publication: Annals of Probability
publication_status: published
publisher: Institute of Mathematical Statistics
publist_id: '4908'
quality_controlled: 0
status: public
title: A spatial version of the Itô-Stratonovich correction
type: journal_article
volume: 40
year: '2012'
...
---
_id: '2127'
abstract:
- lang: eng
  text: We study a new notion of Ricci curvature that applies to Markov chains on
    discrete spaces. This notion relies on geodesic convexity of the entropy and is
    analogous to the one introduced by Lott, Sturm, and Villani for geodesic measure
    spaces. In order to apply to the discrete setting, the role of the Wasserstein
    metric is taken over by a different metric, having the property that continuous
    time Markov chains are gradient flows of the entropy. Using this notion of Ricci
    curvature we prove discrete analogues of fundamental results by Bakry–Émery and
    Otto–Villani. Further, we show that Ricci curvature bounds are preserved under
    tensorisation. As a special case we obtain the sharp Ricci curvature lower bound
    for the discrete hypercube.
acknowledgement: Jan Maas is supported by Rubicon subsidy 680-50-0901 of the Netherlands
  Organisation for Scientific Research (NWO).
author:
- first_name: Matthias
  full_name: Erbar, Matthias
  last_name: Erbar
- first_name: Jan
  full_name: Jan Maas
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
citation:
  ama: Erbar M, Maas J. Ricci curvature of finite Markov chains via convexity of the
    entropy. <i>Archive for Rational Mechanics and Analysis</i>. 2012;206(3):997-1038.
    doi:<a href="https://doi.org/10.1007/s00205-012-0554-z">10.1007/s00205-012-0554-z</a>
  apa: Erbar, M., &#38; Maas, J. (2012). Ricci curvature of finite Markov chains via
    convexity of the entropy. <i>Archive for Rational Mechanics and Analysis</i>.
    Springer. <a href="https://doi.org/10.1007/s00205-012-0554-z">https://doi.org/10.1007/s00205-012-0554-z</a>
  chicago: Erbar, Matthias, and Jan Maas. “Ricci Curvature of Finite Markov Chains
    via Convexity of the Entropy.” <i>Archive for Rational Mechanics and Analysis</i>.
    Springer, 2012. <a href="https://doi.org/10.1007/s00205-012-0554-z">https://doi.org/10.1007/s00205-012-0554-z</a>.
  ieee: M. Erbar and J. Maas, “Ricci curvature of finite Markov chains via convexity
    of the entropy,” <i>Archive for Rational Mechanics and Analysis</i>, vol. 206,
    no. 3. Springer, pp. 997–1038, 2012.
  ista: Erbar M, Maas J. 2012. Ricci curvature of finite Markov chains via convexity
    of the entropy. Archive for Rational Mechanics and Analysis. 206(3), 997–1038.
  mla: Erbar, Matthias, and Jan Maas. “Ricci Curvature of Finite Markov Chains via
    Convexity of the Entropy.” <i>Archive for Rational Mechanics and Analysis</i>,
    vol. 206, no. 3, Springer, 2012, pp. 997–1038, doi:<a href="https://doi.org/10.1007/s00205-012-0554-z">10.1007/s00205-012-0554-z</a>.
  short: M. Erbar, J. Maas, Archive for Rational Mechanics and Analysis 206 (2012)
    997–1038.
date_created: 2018-12-11T11:55:52Z
date_published: 2012-12-01T00:00:00Z
date_updated: 2021-01-12T06:55:28Z
day: '01'
doi: 10.1007/s00205-012-0554-z
extern: 1
intvolume: '       206'
issue: '3'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1111.2687
month: '12'
oa: 1
page: 997 - 1038
publication: Archive for Rational Mechanics and Analysis
publication_status: published
publisher: Springer
publist_id: '4906'
quality_controlled: 0
status: public
title: Ricci curvature of finite Markov chains via convexity of the entropy
type: journal_article
volume: 206
year: '2012'
...
---
_id: '2128'
abstract:
- lang: eng
  text: We introduce a technique for handling Whitney decompositions in Gaussian harmonic
    analysis and apply it to the study of Gaussian analogues of the classical tent
    spaces T 1,q of Coifman–Meyer–Stein.
acknowledgement: J. Maas was supported by Rubicon subsidy 680-50-0901 of the Netherlands
  Organisation for Scientific Research (NWO). J. van Neerven was supported by VICI
  subsidy 639.033.604 of the Netherlands Organisation for Scientific Research (NWO).
author:
- first_name: Jan
  full_name: Jan Maas
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
- first_name: Jan
  full_name: van Neerven, Jan M
  last_name: Van Neerven
- first_name: Pierre
  full_name: Portal, Pierre
  last_name: Portal
citation:
  ama: Maas J, Van Neerven J, Portal P. Whitney coverings and the tent spaces T 1,q
    (γ) for the Gaussian measure. <i>Arkiv för Matematik</i>. 2012;50(2):379-395.
    doi:<a href="https://doi.org/10.1007/s11512-010-0143-z">10.1007/s11512-010-0143-z</a>
  apa: Maas, J., Van Neerven, J., &#38; Portal, P. (2012). Whitney coverings and the
    tent spaces T 1,q (γ) for the Gaussian measure. <i>Arkiv För Matematik</i>. Springer.
    <a href="https://doi.org/10.1007/s11512-010-0143-z">https://doi.org/10.1007/s11512-010-0143-z</a>
  chicago: Maas, Jan, Jan Van Neerven, and Pierre Portal. “Whitney Coverings and the
    Tent Spaces T 1,q (γ) for the Gaussian Measure.” <i>Arkiv För Matematik</i>. Springer,
    2012. <a href="https://doi.org/10.1007/s11512-010-0143-z">https://doi.org/10.1007/s11512-010-0143-z</a>.
  ieee: J. Maas, J. Van Neerven, and P. Portal, “Whitney coverings and the tent spaces
    T 1,q (γ) for the Gaussian measure,” <i>Arkiv för Matematik</i>, vol. 50, no.
    2. Springer, pp. 379–395, 2012.
  ista: Maas J, Van Neerven J, Portal P. 2012. Whitney coverings and the tent spaces
    T 1,q (γ) for the Gaussian measure. Arkiv för Matematik. 50(2), 379–395.
  mla: Maas, Jan, et al. “Whitney Coverings and the Tent Spaces T 1,q (γ) for the
    Gaussian Measure.” <i>Arkiv För Matematik</i>, vol. 50, no. 2, Springer, 2012,
    pp. 379–95, doi:<a href="https://doi.org/10.1007/s11512-010-0143-z">10.1007/s11512-010-0143-z</a>.
  short: J. Maas, J. Van Neerven, P. Portal, Arkiv För Matematik 50 (2012) 379–395.
date_created: 2018-12-11T11:55:52Z
date_published: 2012-10-01T00:00:00Z
date_updated: 2021-01-12T06:55:28Z
day: '01'
doi: 10.1007/s11512-010-0143-z
extern: 1
intvolume: '        50'
issue: '2'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1002.4911
month: '10'
oa: 1
page: 379 - 395
publication: Arkiv för Matematik
publication_status: published
publisher: Springer
publist_id: '4907'
quality_controlled: 0
status: public
title: Whitney coverings and the tent spaces T 1,q (γ) for the Gaussian measure
type: journal_article
volume: 50
year: '2012'
...
---
_id: '2201'
abstract:
- lang: eng
  text: We study the growth dynamics of ordered structures of strongly interacting
    polar molecules in optical lattices. Using a dipole blockade of microwave excitations,
    we map the system onto an interacting spin-1/2 model possessing ground states
    with crystalline order, and describe a way to prepare these states by nonadiabatically
    driving the transitions between molecular rotational levels. The proposed technique
    bypasses the need to cross a phase transition and allows for the creation of ordered
    domains of considerably larger size compared to approaches relying on adiabatic
    preparation.
article_processing_charge: No
author:
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Roman
  full_name: Krems, Roman
  last_name: Krems
- first_name: Hendrik
  full_name: Weimer, Hendrik
  last_name: Weimer
citation:
  ama: Lemeshko M, Krems R, Weimer H. Nonadiabatic preparation of spin crystals with
    ultracold polar molecules. <i>Physical Review Letters</i>. 2012;109(3). doi:<a
    href="https://doi.org/10.1103/PhysRevLett.109.035301">10.1103/PhysRevLett.109.035301</a>
  apa: Lemeshko, M., Krems, R., &#38; Weimer, H. (2012). Nonadiabatic preparation
    of spin crystals with ultracold polar molecules. <i>Physical Review Letters</i>.
    American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.109.035301">https://doi.org/10.1103/PhysRevLett.109.035301</a>
  chicago: Lemeshko, Mikhail, Roman Krems, and Hendrik Weimer. “Nonadiabatic Preparation
    of Spin Crystals with Ultracold Polar Molecules.” <i>Physical Review Letters</i>.
    American Physical Society, 2012. <a href="https://doi.org/10.1103/PhysRevLett.109.035301">https://doi.org/10.1103/PhysRevLett.109.035301</a>.
  ieee: M. Lemeshko, R. Krems, and H. Weimer, “Nonadiabatic preparation of spin crystals
    with ultracold polar molecules,” <i>Physical Review Letters</i>, vol. 109, no.
    3. American Physical Society, 2012.
  ista: Lemeshko M, Krems R, Weimer H. 2012. Nonadiabatic preparation of spin crystals
    with ultracold polar molecules. Physical Review Letters. 109(3).
  mla: Lemeshko, Mikhail, et al. “Nonadiabatic Preparation of Spin Crystals with Ultracold
    Polar Molecules.” <i>Physical Review Letters</i>, vol. 109, no. 3, American Physical
    Society, 2012, doi:<a href="https://doi.org/10.1103/PhysRevLett.109.035301">10.1103/PhysRevLett.109.035301</a>.
  short: M. Lemeshko, R. Krems, H. Weimer, Physical Review Letters 109 (2012).
date_created: 2018-12-11T11:56:17Z
date_published: 2012-07-16T00:00:00Z
date_updated: 2021-11-16T08:01:02Z
day: '16'
doi: 10.1103/PhysRevLett.109.035301
extern: '1'
intvolume: '       109'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1203.0010
month: '07'
oa: 1
oa_version: None
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '4772'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1103/PhysRevLett.109.049901
status: public
title: Nonadiabatic preparation of spin crystals with ultracold polar molecules
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 109
year: '2012'
...
---
_id: '2202'
abstract:
- lang: eng
  text: We propose a method for sensitive parallel detection of low-frequency electromagnetic
    fields based on the fine structure interactions in paramagnetic polar molecules.
    Compared to the recently implemented scheme employing ultracold 87Rb atoms by
    Böhi, the technique based on molecules offers a 100-fold higher sensitivity, the
    possibility to measure both the electric and magnetic field components, and a
    probe of a wide range of frequencies from the dc limit to the THz regime.
author:
- first_name: Sergey
  full_name: Alyabyshev, Sergey V
  last_name: Alyabyshev
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Roman
  full_name: Krems, Roman V
  last_name: Krems
citation:
  ama: Alyabyshev S, Lemeshko M, Krems R. Sensitive imaging of electromagnetic fields
    with paramagnetic polar molecules. <i>Physical Review A - Atomic, Molecular, and
    Optical Physics</i>. 2012;86(1). doi:<a href="https://doi.org/10.1103/PhysRevA.86.013409">10.1103/PhysRevA.86.013409</a>
  apa: Alyabyshev, S., Lemeshko, M., &#38; Krems, R. (2012). Sensitive imaging of
    electromagnetic fields with paramagnetic polar molecules. <i>Physical Review A
    - Atomic, Molecular, and Optical Physics</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevA.86.013409">https://doi.org/10.1103/PhysRevA.86.013409</a>
  chicago: Alyabyshev, Sergey, Mikhail Lemeshko, and Roman Krems. “Sensitive Imaging
    of Electromagnetic Fields with Paramagnetic Polar Molecules.” <i>Physical Review
    A - Atomic, Molecular, and Optical Physics</i>. American Physical Society, 2012.
    <a href="https://doi.org/10.1103/PhysRevA.86.013409">https://doi.org/10.1103/PhysRevA.86.013409</a>.
  ieee: S. Alyabyshev, M. Lemeshko, and R. Krems, “Sensitive imaging of electromagnetic
    fields with paramagnetic polar molecules,” <i>Physical Review A - Atomic, Molecular,
    and Optical Physics</i>, vol. 86, no. 1. American Physical Society, 2012.
  ista: Alyabyshev S, Lemeshko M, Krems R. 2012. Sensitive imaging of electromagnetic
    fields with paramagnetic polar molecules. Physical Review A - Atomic, Molecular,
    and Optical Physics. 86(1).
  mla: Alyabyshev, Sergey, et al. “Sensitive Imaging of Electromagnetic Fields with
    Paramagnetic Polar Molecules.” <i>Physical Review A - Atomic, Molecular, and Optical
    Physics</i>, vol. 86, no. 1, American Physical Society, 2012, doi:<a href="https://doi.org/10.1103/PhysRevA.86.013409">10.1103/PhysRevA.86.013409</a>.
  short: S. Alyabyshev, M. Lemeshko, R. Krems, Physical Review A - Atomic, Molecular,
    and Optical Physics 86 (2012).
date_created: 2018-12-11T11:56:18Z
date_published: 2012-07-13T00:00:00Z
date_updated: 2021-01-12T06:55:57Z
day: '13'
doi: 10.1103/PhysRevA.86.013409
extern: 1
intvolume: '        86'
issue: '1'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1202.1857
month: '07'
oa: 1
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '4773'
quality_controlled: 0
status: public
title: Sensitive imaging of electromagnetic fields with paramagnetic polar molecules
type: journal_article
volume: 86
year: '2012'
...
---
_id: '2203'
abstract:
- lang: eng
  text: We show that the electric dipole-dipole interaction between a pair of polar
    molecules undergoes an all-out transformation when superimposed by a far-off-resonant
    optical field. The combined interaction potential becomes tunable by variation
    of wavelength, polarisation and intensity of the optical field and its dependence
    on the intermolecular separation exhibits a crossover from an inverse-power to
    an oscillating behaviour. The ability thereby offered to control molecular interactions
    opens up avenues toward the creation and manipulation of novel phases of ultracold
    polar gases among whose characteristics is a long-range entanglement of the dipoles'
    mutual orientation. We devised an accurate analytic model of such optical-field-dressed
    dipole-dipole interaction potentials, which enables a straightforward access to
    the optical-field parameters required for the design of intermolecular interactions
    in the laboratory.
author:
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Břetislav
  full_name: Friedrich, Břetislav
  last_name: Friedrich
citation:
  ama: 'Lemeshko M, Friedrich B. Interaction between polar molecules subject to a
    far-off-resonant optical field: Entangled dipoles up- or down-holding each other.
    <i>Molecular Physics</i>. 2012;110(15-16):1873-1881. doi:<a href="https://doi.org/10.1080/00268976.2012.689868">10.1080/00268976.2012.689868</a>'
  apa: 'Lemeshko, M., &#38; Friedrich, B. (2012). Interaction between polar molecules
    subject to a far-off-resonant optical field: Entangled dipoles up- or down-holding
    each other. <i>Molecular Physics</i>. Taylor &#38; Francis. <a href="https://doi.org/10.1080/00268976.2012.689868">https://doi.org/10.1080/00268976.2012.689868</a>'
  chicago: 'Lemeshko, Mikhail, and Břetislav Friedrich. “Interaction between Polar
    Molecules Subject to a Far-off-Resonant Optical Field: Entangled Dipoles up- or
    down-Holding Each Other.” <i>Molecular Physics</i>. Taylor &#38; Francis, 2012.
    <a href="https://doi.org/10.1080/00268976.2012.689868">https://doi.org/10.1080/00268976.2012.689868</a>.'
  ieee: 'M. Lemeshko and B. Friedrich, “Interaction between polar molecules subject
    to a far-off-resonant optical field: Entangled dipoles up- or down-holding each
    other,” <i>Molecular Physics</i>, vol. 110, no. 15–16. Taylor &#38; Francis, pp.
    1873–1881, 2012.'
  ista: 'Lemeshko M, Friedrich B. 2012. Interaction between polar molecules subject
    to a far-off-resonant optical field: Entangled dipoles up- or down-holding each
    other. Molecular Physics. 110(15–16), 1873–1881.'
  mla: 'Lemeshko, Mikhail, and Břetislav Friedrich. “Interaction between Polar Molecules
    Subject to a Far-off-Resonant Optical Field: Entangled Dipoles up- or down-Holding
    Each Other.” <i>Molecular Physics</i>, vol. 110, no. 15–16, Taylor &#38; Francis,
    2012, pp. 1873–81, doi:<a href="https://doi.org/10.1080/00268976.2012.689868">10.1080/00268976.2012.689868</a>.'
  short: M. Lemeshko, B. Friedrich, Molecular Physics 110 (2012) 1873–1881.
date_created: 2018-12-11T11:56:18Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T06:55:58Z
day: '01'
doi: 10.1080/00268976.2012.689868
extern: 1
intvolume: '       110'
issue: 15-16
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1108.4583
month: '01'
oa: 1
page: 1873 - 1881
publication: Molecular Physics
publication_status: published
publisher: Taylor & Francis
publist_id: '4770'
quality_controlled: 0
status: public
title: 'Interaction between polar molecules subject to a far-off-resonant optical
  field: Entangled dipoles up- or down-holding each other'
type: journal_article
volume: 110
year: '2012'
...
---
_id: '2262'
abstract:
- lang: eng
  text: 'Mosaic Analysis with Double Markers (MADM) is a method for generating genetically
    mosaic mice, in which sibling mutant and wild-type cells are labeled with different
    fluorescent markers. It is a powerful tool that enables analysis of gene function
    at the single cell level in vivo. It requires transgenic cassettes to be located
    between the centromere and the mutation in the gene of interest on the same chromosome.
    Here we compare procedures for introduction of MADM cassettes into new loci in
    the mouse genome, and describe new approaches for expanding the utility of MADM.
    We show that: 1) Targeted homologous recombination outperforms random transgenesis
    in generation of reliably expressed MADM cassettes, 2) MADM cassettes in new genomic
    loci need to be validated for biallelic and ubiquitous expression, 3) Recombination
    between MADM cassettes on different chromosomes can be used to study reciprocal
    chromosomal deletions/duplications, and 4) MADM can be modified to permit transgene
    expression by combining it with a binary expression system. The advances described
    in this study expand current, and enable new and more versatile applications of
    MADM.'
acknowledgement: This work was supported by a National Institutes of Health grant
  to LL (R01-NS050835). BT was a Damon Runyon Fellow and was supported by the Damon
  Runyon Cancer Research Foundation Grant DRG-1819-04. KM was supported by the Japan
  Society for the Promotion of Science program for Research Abroad and Human Frontier
  Science Program Organization (LT00300/2007-L). SH was supported by postdoctoral
  fellowships from the European Molecular Biology Organization (ALTF 851-2005), Human
  Frontier Science Program Organization (LT00805/2006-L), and Swiss National Science
  Foundation (PA00P3_124160 and PA00P3_136482). HZ is a Pew Scholar in Biomedical
  Sciences, supported by The Pew Charitable Trusts. LL is an investigator of the Howard
  Hughes Medical Institute. The funders had no role in study design, data collection
  and analysis, decision to publish, or preparation of the manuscript.
author:
- first_name: Bosiljka
  full_name: Tasic, Bosiljka
  last_name: Tasic
- first_name: Kazunari
  full_name: Miyamichi, Kazunari
  last_name: Miyamichi
- first_name: Simon
  full_name: Simon Hippenmeyer
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
- first_name: Vardhan
  full_name: Dani, Vardhan S.
  last_name: Dani
- first_name: H.
  full_name: Zeng, H.
  last_name: Zeng
- first_name: William
  full_name: Joo, William
  last_name: Joo
- first_name: Hui
  full_name: Zong, Hui
  last_name: Zong
- first_name: Yanru
  full_name: Chen-Tsai, Yanru
  last_name: Chen Tsai
- first_name: Liqun
  full_name: Luo, Liqun
  last_name: Luo
citation:
  ama: Tasic B, Miyamichi K, Hippenmeyer S, et al. Extensions of MADM (Mosaic Analysis
    with Double Markers) in Mice . <i>PLoS One</i>. 2012;7(3). doi:<a href="https://doi.org/10.1371/journal.pone.0033332">10.1371/journal.pone.0033332</a>
  apa: Tasic, B., Miyamichi, K., Hippenmeyer, S., Dani, V., Zeng, H., Joo, W., … Luo,
    L. (2012). Extensions of MADM (Mosaic Analysis with Double Markers) in Mice .
    <i>PLoS One</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0033332">https://doi.org/10.1371/journal.pone.0033332</a>
  chicago: Tasic, Bosiljka, Kazunari Miyamichi, Simon Hippenmeyer, Vardhan Dani, H.
    Zeng, William Joo, Hui Zong, Yanru Chen Tsai, and Liqun Luo. “Extensions of MADM
    (Mosaic Analysis with Double Markers) in Mice .” <i>PLoS One</i>. Public Library
    of Science, 2012. <a href="https://doi.org/10.1371/journal.pone.0033332">https://doi.org/10.1371/journal.pone.0033332</a>.
  ieee: B. Tasic <i>et al.</i>, “Extensions of MADM (Mosaic Analysis with Double Markers)
    in Mice ,” <i>PLoS One</i>, vol. 7, no. 3. Public Library of Science, 2012.
  ista: Tasic B, Miyamichi K, Hippenmeyer S, Dani V, Zeng H, Joo W, Zong H, Chen Tsai
    Y, Luo L. 2012. Extensions of MADM (Mosaic Analysis with Double Markers) in Mice
    . PLoS One. 7(3).
  mla: Tasic, Bosiljka, et al. “Extensions of MADM (Mosaic Analysis with Double Markers)
    in Mice .” <i>PLoS One</i>, vol. 7, no. 3, Public Library of Science, 2012, doi:<a
    href="https://doi.org/10.1371/journal.pone.0033332">10.1371/journal.pone.0033332</a>.
  short: B. Tasic, K. Miyamichi, S. Hippenmeyer, V. Dani, H. Zeng, W. Joo, H. Zong,
    Y. Chen Tsai, L. Luo, PLoS One 7 (2012).
date_created: 2018-12-11T11:56:38Z
date_published: 2012-03-27T00:00:00Z
date_updated: 2021-01-12T06:56:22Z
day: '27'
doi: 10.1371/journal.pone.0033332
extern: 1
intvolume: '         7'
issue: '3'
month: '03'
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '4683'
quality_controlled: 0
status: public
title: 'Extensions of MADM (Mosaic Analysis with Double Markers) in Mice '
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
volume: 7
year: '2012'
...
---
_id: '2263'
abstract:
- lang: eng
  text: Nestin-cre transgenic mice have been widely used to direct recombination to
    neural stem cells (NSCs) and intermediate neural progenitor cells (NPCs). Here
    we report that a readily utilized, and the only commercially available, Nestin-cre
    line is insufficient for directing recombination in early embryonic NSCs and NPCs.
    Analysis of recombination efficiency in multiple cre-dependent reporters and a
    genetic mosaic line revealed consistent temporal and spatial patterns of recombination
    in NSCs and NPCs. For comparison we utilized a knock-in Emx1cre line and found
    robust recombination in NSCs and NPCs in ventricular and subventricular zones
    of the cerebral cortices as early as embryonic day 12.5. In addition we found
    that the rate of Nestin-cre driven recombination only reaches sufficiently high
    levels in NSCs and NPCs during late embryonic and early postnatal periods. These
    findings are important when commercially available cre lines are considered for
    directing recombination to embryonic NSCs and NPCs.
author:
- first_name: Huixuan
  full_name: Liang, Huixuan
  last_name: Liang
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
- first_name: H.
  full_name: Ghashghaei, H.
  last_name: Ghashghaei
citation:
  ama: Liang H, Hippenmeyer S, Ghashghaei H. A Nestin-cre transgenic mouse is insufficient
    for recombination in early embryonic neural progenitors. <i>Biology open</i>.
    2012;1(12):1200-1203. doi:<a href="https://doi.org/10.1242/bio.20122287">10.1242/bio.20122287</a>
  apa: Liang, H., Hippenmeyer, S., &#38; Ghashghaei, H. (2012). A Nestin-cre transgenic
    mouse is insufficient for recombination in early embryonic neural progenitors.
    <i>Biology Open</i>. The Company of Biologists. <a href="https://doi.org/10.1242/bio.20122287">https://doi.org/10.1242/bio.20122287</a>
  chicago: Liang, Huixuan, Simon Hippenmeyer, and H. Ghashghaei. “A Nestin-Cre Transgenic
    Mouse Is Insufficient for Recombination in Early Embryonic Neural Progenitors.”
    <i>Biology Open</i>. The Company of Biologists, 2012. <a href="https://doi.org/10.1242/bio.20122287">https://doi.org/10.1242/bio.20122287</a>.
  ieee: H. Liang, S. Hippenmeyer, and H. Ghashghaei, “A Nestin-cre transgenic mouse
    is insufficient for recombination in early embryonic neural progenitors,” <i>Biology
    open</i>, vol. 1, no. 12. The Company of Biologists, pp. 1200–1203, 2012.
  ista: Liang H, Hippenmeyer S, Ghashghaei H. 2012. A Nestin-cre transgenic mouse
    is insufficient for recombination in early embryonic neural progenitors. Biology
    open. 1(12), 1200–1203.
  mla: Liang, Huixuan, et al. “A Nestin-Cre Transgenic Mouse Is Insufficient for Recombination
    in Early Embryonic Neural Progenitors.” <i>Biology Open</i>, vol. 1, no. 12, The
    Company of Biologists, 2012, pp. 1200–03, doi:<a href="https://doi.org/10.1242/bio.20122287">10.1242/bio.20122287</a>.
  short: H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.
date_created: 2018-12-11T11:56:38Z
date_published: 2012-12-15T00:00:00Z
date_updated: 2021-01-12T06:56:23Z
day: '15'
ddc:
- '576'
department:
- _id: SiHi
doi: 10.1242/bio.20122287
file:
- access_level: open_access
  checksum: 605a1800b81227848c361fd6ba7d22ba
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:09Z
  date_updated: 2020-07-14T12:45:35Z
  file_id: '4990'
  file_name: IST-2015-387-v1+1_1200.full.pdf
  file_size: 726695
  relation: main_file
file_date_updated: 2020-07-14T12:45:35Z
has_accepted_license: '1'
intvolume: '         1'
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 1200 - 1203
publication: Biology open
publication_status: published
publisher: The Company of Biologists
publist_id: '4682'
pubrep_id: '387'
quality_controlled: '1'
scopus_import: 1
status: public
title: A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic
  neural progenitors
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2012'
...
---
_id: '2267'
abstract:
- lang: eng
  text: 'Capturing real-world objects with laser-scanning technology has become an
    everyday task. Recently, the acquisition of dynamic scenes at interactive frame
    rates has become feasible. A high-quality visualization of the resulting point
    cloud stream would require a per-frame reconstruction of object surfaces. Unfortunately,
    reconstruction computations are still too time-consuming to be applied interactively.
    In this paper we present a local surface reconstruction and visualization technique
    that provides interactive feedback for reasonably sized point clouds, while achieving
    high image quality. Our method is performed entirely on the GPU and in screen
    pace, exploiting the efficiency of the common rasterization pipeline. The approach
    is very general, as no assumption is made about point connectivity or sampling
    density. This naturally allows combining the outputs of multiple scanners in a
    single visualization, which is useful for many virtual and augmented reality applications. '
author:
- first_name: Reinhold
  full_name: Preiner, Reinhold
  last_name: Preiner
- first_name: Stefan
  full_name: Jeschke, Stefan
  id: 44D6411A-F248-11E8-B48F-1D18A9856A87
  last_name: Jeschke
- first_name: Michael
  full_name: Wimmer, Michael
  last_name: Wimmer
citation:
  ama: 'Preiner R, Jeschke S, Wimmer M. Auto splats: Dynamic point cloud visualization
    on the GPU. In: Eurographics Association; 2012:139-148. doi:<a href="https://doi.org/10.2312/EGPGV/EGPGV12/139-148">10.2312/EGPGV/EGPGV12/139-148</a>'
  apa: 'Preiner, R., Jeschke, S., &#38; Wimmer, M. (2012). Auto splats: Dynamic point
    cloud visualization on the GPU (pp. 139–148). Presented at the EGPGV: Eurographics
    Symposium on Parallel Graphics and Visualization, Calgari, Italy: Eurographics
    Association. <a href="https://doi.org/10.2312/EGPGV/EGPGV12/139-148">https://doi.org/10.2312/EGPGV/EGPGV12/139-148</a>'
  chicago: 'Preiner, Reinhold, Stefan Jeschke, and Michael Wimmer. “Auto Splats: Dynamic
    Point Cloud Visualization on the GPU,” 139–48. Eurographics Association, 2012.
    <a href="https://doi.org/10.2312/EGPGV/EGPGV12/139-148">https://doi.org/10.2312/EGPGV/EGPGV12/139-148</a>.'
  ieee: 'R. Preiner, S. Jeschke, and M. Wimmer, “Auto splats: Dynamic point cloud
    visualization on the GPU,” presented at the EGPGV: Eurographics Symposium on Parallel
    Graphics and Visualization, Calgari, Italy, 2012, pp. 139–148.'
  ista: 'Preiner R, Jeschke S, Wimmer M. 2012. Auto splats: Dynamic point cloud visualization
    on the GPU. EGPGV: Eurographics Symposium on Parallel Graphics and Visualization,
    139–148.'
  mla: 'Preiner, Reinhold, et al. <i>Auto Splats: Dynamic Point Cloud Visualization
    on the GPU</i>. Eurographics Association, 2012, pp. 139–48, doi:<a href="https://doi.org/10.2312/EGPGV/EGPGV12/139-148">10.2312/EGPGV/EGPGV12/139-148</a>.'
  short: R. Preiner, S. Jeschke, M. Wimmer, in:, Eurographics Association, 2012, pp.
    139–148.
conference:
  end_date: 2012-05-14
  location: Calgari, Italy
  name: 'EGPGV: Eurographics Symposium on Parallel Graphics and Visualization'
  start_date: 2012-05-13
date_created: 2018-12-11T11:56:40Z
date_published: 2012-05-13T00:00:00Z
date_updated: 2021-01-12T06:56:24Z
day: '13'
ddc:
- '000'
doi: 10.2312/EGPGV/EGPGV12/139-148
extern: '1'
file:
- access_level: open_access
  checksum: 5495bb6ee8662cd401b34afb04dfb40f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:11:13Z
  date_updated: 2020-07-14T12:45:35Z
  file_id: '4866'
  file_name: IST-2016-572-v1+1_preiner_2012_AS-draft.pdf
  file_size: 14903860
  relation: main_file
file_date_updated: 2020-07-14T12:45:35Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Submitted Version
page: 139 - 148
publication_status: published
publisher: Eurographics Association
publist_id: '4677'
pubrep_id: '572'
quality_controlled: '1'
status: public
title: 'Auto splats: Dynamic point cloud visualization on the GPU'
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
