---
_id: '342'
abstract:
- lang: eng
  text: Morphology is a key parameter in the design of novel nanocrystals and nanomaterials
    with controlled functional properties. Here, we demonstrate the potential of foreign
    metal ions to tune the morphology of colloidal semiconductor nanoparticles. We
    illustrate the underlying mechanism by preparing copper selenide nanocubes in
    the presence of Al ions. We further characterize the plasmonic properties of the
    obtained nanocrystals and demonstrate their potential as a platform to produce
    cubic nanoparticles with different composition by cation exchange. © 2013 American
    Chemical Society.
acknowledgement: The research was supported by the European Regional Development Funds.
  M.I. thanks the Spanish MICINN for her Ph.D. grant. J.A. and R.Z. also acknowledge
  MAT2010-15138.
article_processing_charge: No
article_type: original
author:
- first_name: Wenhua
  full_name: Li, Wenhua
  last_name: Li
- first_name: Reza
  full_name: Zamani, Reza
  last_name: Zamani
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Doris
  full_name: Cadavid, Doris
  last_name: Cadavid
- first_name: Alexey
  full_name: Shavel, Alexey
  last_name: Shavel
- first_name: Joan
  full_name: Morante, Joan
  last_name: Morante
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: 'Li W, Zamani R, Ibáñez M, et al. Metal ions to control the morphology of semiconductor
    nanoparticles: Copper selenide nanocubes. <i>Journal of the American Chemical
    Society</i>. 2013;135(12):4664-4667. doi:<a href="https://doi.org/10.1021/ja400472m">10.1021/ja400472m</a>'
  apa: 'Li, W., Zamani, R., Ibáñez, M., Cadavid, D., Shavel, A., Morante, J., … Cabot,
    A. (2013). Metal ions to control the morphology of semiconductor nanoparticles:
    Copper selenide nanocubes. <i>Journal of the American Chemical Society</i>. American
    Chemical Society. <a href="https://doi.org/10.1021/ja400472m">https://doi.org/10.1021/ja400472m</a>'
  chicago: 'Li, Wenhua, Reza Zamani, Maria Ibáñez, Doris Cadavid, Alexey Shavel, Joan
    Morante, Jordi Arbiol, and Andreu Cabot. “Metal Ions to Control the Morphology
    of Semiconductor Nanoparticles: Copper Selenide Nanocubes.” <i>Journal of the
    American Chemical Society</i>. American Chemical Society, 2013. <a href="https://doi.org/10.1021/ja400472m">https://doi.org/10.1021/ja400472m</a>.'
  ieee: 'W. Li <i>et al.</i>, “Metal ions to control the morphology of semiconductor
    nanoparticles: Copper selenide nanocubes,” <i>Journal of the American Chemical
    Society</i>, vol. 135, no. 12. American Chemical Society, pp. 4664–4667, 2013.'
  ista: 'Li W, Zamani R, Ibáñez M, Cadavid D, Shavel A, Morante J, Arbiol J, Cabot
    A. 2013. Metal ions to control the morphology of semiconductor nanoparticles:
    Copper selenide nanocubes. Journal of the American Chemical Society. 135(12),
    4664–4667.'
  mla: 'Li, Wenhua, et al. “Metal Ions to Control the Morphology of Semiconductor
    Nanoparticles: Copper Selenide Nanocubes.” <i>Journal of the American Chemical
    Society</i>, vol. 135, no. 12, American Chemical Society, 2013, pp. 4664–67, doi:<a
    href="https://doi.org/10.1021/ja400472m">10.1021/ja400472m</a>.'
  short: W. Li, R. Zamani, M. Ibáñez, D. Cadavid, A. Shavel, J. Morante, J. Arbiol,
    A. Cabot, Journal of the American Chemical Society 135 (2013) 4664–4667.
date_created: 2018-12-11T11:45:55Z
date_published: 2013-03-07T00:00:00Z
date_updated: 2021-01-12T07:43:21Z
day: '07'
doi: 10.1021/ja400472m
extern: '1'
intvolume: '       135'
issue: '12'
language:
- iso: eng
month: '03'
oa_version: None
page: 4664 - 4667
publication: Journal of the American Chemical Society
publication_status: published
publisher: American Chemical Society
publist_id: '7482'
quality_controlled: '1'
status: public
title: 'Metal ions to control the morphology of semiconductor nanoparticles: Copper
  selenide nanocubes'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 135
year: '2013'
...
---
_id: '343'
abstract:
- lang: eng
  text: The bottom-up assembly of nanocrystals provides access to a three-dimensional
    composition control at the nanoscale not attainable by any other technology. In
    particular, colloidal nanoheterostructures, with intrinsic multiphase organization,
    are especially appealing building blocks for the bottom-up production of nanocomposites.
    In the present work, we use PbTe-PbS as the model material system and thermoelectricity
    as the paradigmatic application to investigate the potential of the bottom-up
    assembly of core-shell nanoparticles to produce functional nanocomposites. With
    this goal in mind, a rapid, high-yield and scalable colloidal synthetic route
    to prepare grams of PbTe@PbS core-shell nanoparticles with unprecedented narrow
    size distributions and exceptional composition control is detailed. PbTe@PbS nanoparticles
    were used as building blocks for the bottom-up production of PbTe-PbS nanocomposites
    with tuned composition. In such PbTe-PbS nanocomposites, synergistic nanocrystal
    doping effects result in up to 10-fold higher electrical conductivities than in
    pure PbTe and PbS nanomaterials. At the same time, the acoustic impedance mismatch
    between PbTe and PbS phases and a partial phase alloying provide PbTe-PbS nanocomposites
    with strongly reduced thermal conductivities. As a result, record thermoelectric
    figures of merit (ZT) of ∼1.1 were obtained from undoped PbTe and PbS phases at
    710 K. These high ZT values prove the potential of the proposed processes to produce
    efficient functional nanomaterials with programmable properties. © 2013 American
    Chemical Society.
acknowledgement: "The research was supported by the European Regional Development
  Funds (ERDF, “FEDER Programa Competitivitat de Catalunya 2007-2013”) and the Spanish
  MICINN Projects MAT2008-05779, MAT2010-15138, CSD2009-00050, and CSD2009-00013.
  M.I. thanks the Spanish MICINN for her Ph.D. grant. J.A. and R.Z. also acknowledge
  Generalitat de Catalunya 2009-SGR-770 and XaRMAE.\r\n\r\nThe authors declare no
  competing financial interest."
article_processing_charge: No
article_type: original
author:
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Reza
  full_name: Zamani, Reza
  last_name: Zamani
- first_name: Stéphane
  full_name: Gorsse, Stéphane
  last_name: Gorsse
- first_name: Jiandong
  full_name: Fan, Jiandong
  last_name: Fan
- first_name: Silvia
  full_name: Ortega, Silvia
  last_name: Ortega
- first_name: Doris
  full_name: Cadavid, Doris
  last_name: Cadavid
- first_name: Joan
  full_name: Morante, Joan
  last_name: Morante
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: 'Ibáñez M, Zamani R, Gorsse S, et al. Core shell nanoparticles as building
    blocks for the bottom-up production of functional nanocomposites: PbTe PbS thermoelectric
    properties. <i>ACS Nano</i>. 2013;7(3):2573-2586. doi:<a href="https://doi.org/10.1021/nn305971v">10.1021/nn305971v</a>'
  apa: 'Ibáñez, M., Zamani, R., Gorsse, S., Fan, J., Ortega, S., Cadavid, D., … Cabot,
    A. (2013). Core shell nanoparticles as building blocks for the bottom-up production
    of functional nanocomposites: PbTe PbS thermoelectric properties. <i>ACS Nano</i>.
    American Chemical Society. <a href="https://doi.org/10.1021/nn305971v">https://doi.org/10.1021/nn305971v</a>'
  chicago: 'Ibáñez, Maria, Reza Zamani, Stéphane Gorsse, Jiandong Fan, Silvia Ortega,
    Doris Cadavid, Joan Morante, Jordi Arbiol, and Andreu Cabot. “Core Shell Nanoparticles
    as Building Blocks for the Bottom-up Production of Functional Nanocomposites:
    PbTe PbS Thermoelectric Properties.” <i>ACS Nano</i>. American Chemical Society,
    2013. <a href="https://doi.org/10.1021/nn305971v">https://doi.org/10.1021/nn305971v</a>.'
  ieee: 'M. Ibáñez <i>et al.</i>, “Core shell nanoparticles as building blocks for
    the bottom-up production of functional nanocomposites: PbTe PbS thermoelectric
    properties,” <i>ACS Nano</i>, vol. 7, no. 3. American Chemical Society, pp. 2573–2586,
    2013.'
  ista: 'Ibáñez M, Zamani R, Gorsse S, Fan J, Ortega S, Cadavid D, Morante J, Arbiol
    J, Cabot A. 2013. Core shell nanoparticles as building blocks for the bottom-up
    production of functional nanocomposites: PbTe PbS thermoelectric properties. ACS
    Nano. 7(3), 2573–2586.'
  mla: 'Ibáñez, Maria, et al. “Core Shell Nanoparticles as Building Blocks for the
    Bottom-up Production of Functional Nanocomposites: PbTe PbS Thermoelectric Properties.”
    <i>ACS Nano</i>, vol. 7, no. 3, American Chemical Society, 2013, pp. 2573–86,
    doi:<a href="https://doi.org/10.1021/nn305971v">10.1021/nn305971v</a>.'
  short: M. Ibáñez, R. Zamani, S. Gorsse, J. Fan, S. Ortega, D. Cadavid, J. Morante,
    J. Arbiol, A. Cabot, ACS Nano 7 (2013) 2573–2586.
date_created: 2018-12-11T11:45:55Z
date_published: 2013-02-28T00:00:00Z
date_updated: 2021-01-12T07:43:25Z
day: '28'
doi: 10.1021/nn305971v
extern: '1'
intvolume: '         7'
issue: '3'
language:
- iso: eng
month: '02'
oa_version: None
page: 2573 - 2586
publication: ACS Nano
publication_status: published
publisher: American Chemical Society
publist_id: '7483'
quality_controlled: '1'
status: public
title: 'Core shell nanoparticles as building blocks for the bottom-up production of
  functional nanocomposites: PbTe PbS thermoelectric properties'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2013'
...
---
_id: '344'
abstract:
- lang: eng
  text: Copper-based selenides are attracting increasing interest due to their outstanding
    optoelectronic and thermoelectric properties. Herein a novel colloidal synthetic
    route to prepare Cu2SnSe3 nanocrystals with controlled size, shape and composition
    is presented. The high yield of the developed procedure allowed its up-scaling
    to the production of grams of colloidal Cu2SnSe3 nanocrystals. These nanocrystals
    were used as building blocks for the production of Cu2SnSe3 bulk nanostructured
    materials by spark plasma sintering. The thermoelectric properties of the prepared
    nanocrystalline Cu2SnSe3 pellets were characterized in the temperature range from
    300 to 720 K. The obtained results show the bottom-up production of nanocrystalline
    materials from solution-processed nanocrystals to be a potentially advantageous
    alternative to conventional methods of production of efficient thermoelectric
    materials.
article_processing_charge: No
article_type: original
author:
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Doris
  full_name: Cadavid, Doris
  last_name: Cadavid
- first_name: Umberto
  full_name: Anselmi Tamburini, Umberto
  last_name: Anselmi Tamburini
- first_name: Reza
  full_name: Zamani, Reza
  last_name: Zamani
- first_name: Stéphane
  full_name: Gorsse, Stéphane
  last_name: Gorsse
- first_name: Wenhua
  full_name: Li, Wenhua
  last_name: Li
- first_name: Antonio
  full_name: López, Antonio
  last_name: López
- first_name: Joan
  full_name: Morante, Joan
  last_name: Morante
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Ibáñez M, Cadavid D, Anselmi Tamburini U, et al. Colloidal synthesis and thermoelectric
    properties of Cu 2SnSe3 nanocrystals. <i>Journal of Materials Chemistry A</i>.
    2013;1(4):1421-1426. doi:<a href="https://doi.org/10.1039/C2TA00419D">10.1039/C2TA00419D</a>
  apa: Ibáñez, M., Cadavid, D., Anselmi Tamburini, U., Zamani, R., Gorsse, S., Li,
    W., … Cabot, A. (2013). Colloidal synthesis and thermoelectric properties of Cu
    2SnSe3 nanocrystals. <i>Journal of Materials Chemistry A</i>. Royal Society of
    Chemistry. <a href="https://doi.org/10.1039/C2TA00419D">https://doi.org/10.1039/C2TA00419D</a>
  chicago: Ibáñez, Maria, Doris Cadavid, Umberto Anselmi Tamburini, Reza Zamani, Stéphane
    Gorsse, Wenhua Li, Antonio López, Joan Morante, Jordi Arbiol, and Andreu Cabot.
    “Colloidal Synthesis and Thermoelectric Properties of Cu 2SnSe3 Nanocrystals.”
    <i>Journal of Materials Chemistry A</i>. Royal Society of Chemistry, 2013. <a
    href="https://doi.org/10.1039/C2TA00419D">https://doi.org/10.1039/C2TA00419D</a>.
  ieee: M. Ibáñez <i>et al.</i>, “Colloidal synthesis and thermoelectric properties
    of Cu 2SnSe3 nanocrystals,” <i>Journal of Materials Chemistry A</i>, vol. 1, no.
    4. Royal Society of Chemistry, pp. 1421–1426, 2013.
  ista: Ibáñez M, Cadavid D, Anselmi Tamburini U, Zamani R, Gorsse S, Li W, López
    A, Morante J, Arbiol J, Cabot A. 2013. Colloidal synthesis and thermoelectric
    properties of Cu 2SnSe3 nanocrystals. Journal of Materials Chemistry A. 1(4),
    1421–1426.
  mla: Ibáñez, Maria, et al. “Colloidal Synthesis and Thermoelectric Properties of
    Cu 2SnSe3 Nanocrystals.” <i>Journal of Materials Chemistry A</i>, vol. 1, no.
    4, Royal Society of Chemistry, 2013, pp. 1421–26, doi:<a href="https://doi.org/10.1039/C2TA00419D">10.1039/C2TA00419D</a>.
  short: M. Ibáñez, D. Cadavid, U. Anselmi Tamburini, R. Zamani, S. Gorsse, W. Li,
    A. López, J. Morante, J. Arbiol, A. Cabot, Journal of Materials Chemistry A 1
    (2013) 1421–1426.
date_created: 2018-12-11T11:45:56Z
date_published: 2013-01-28T00:00:00Z
date_updated: 2021-01-12T07:43:28Z
day: '28'
doi: 10.1039/C2TA00419D
extern: '1'
intvolume: '         1'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://hal.archives-ouvertes.fr/hal-00917429/
month: '01'
oa: 1
oa_version: Submitted Version
page: 1421 - 1426
publication: Journal of Materials Chemistry A
publication_status: published
publisher: Royal Society of Chemistry
publist_id: '7484'
quality_controlled: '1'
status: public
title: Colloidal synthesis and thermoelectric properties of Cu 2SnSe3 nanocrystals
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2013'
...
---
_id: '351'
abstract:
- lang: eng
  text: 'A multistrategy approach to overcome the main challenges of nanoparticle-based
    solution-processed Cu2ZnSnSe4 thin film solar cells is presented. We developed
    an efficient ligand exchange strategy, using an antimony salt, to displace organic
    ligands from the surface of Cu 2ZnSnS4 nanoparticles. An automated pulsed spray-deposition
    system was used to deposit the nanoparticles into homogeneous and crack-free films
    with controlled thickness. After annealing the film in a Se-rich atmosphere, carbon-free
    and crystalline Cu2ZnSnSe4 absorber layers were obtained. Not only was crystallization
    promoted by the complete removal of organics, but also Sb itself played a critical
    role. The Sb-assisted crystal growth is associated with the formation of a Sb-based
    compound at the grain boundaries, which locally reduces the melting point, thus
    promoting the film diffusion-limited crystallization. '
acknowledgement: This work was supported by the European Regional Development Funds
  and the Framework 7 program under project SCALENANO (FP7-NMP-ENERGY-2011-284486).
  E.S. thanks the Spanish government for the “Ramon y Cajal” fellowship (RYC-2011-09212).
article_processing_charge: No
article_type: original
author:
- first_name: Alex
  full_name: Carrete, Alex
  last_name: Carrete
- first_name: Alexey
  full_name: Shavel, Alexey
  last_name: Shavel
- first_name: Xavier
  full_name: Fontané, Xavier
  last_name: Fontané
- first_name: Joana
  full_name: Montserrat, Joana
  last_name: Montserrat
- first_name: Jiandong
  full_name: Fan, Jiandong
  last_name: Fan
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Edgardo
  full_name: Saucedo, Edgardo
  last_name: Saucedo
- first_name: Alejandro
  full_name: Pérez Rodríguez, Alejandro
  last_name: Pérez Rodríguez
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Carrete A, Shavel A, Fontané X, et al. Antimony-based ligand exchange to promote
    crystallization in spray-deposited Cu2ZnSnSe4 solar cells. <i>Journal of the American
    Chemical Society</i>. 2013;135(43):15982-15985. doi:<a href="https://doi.org/10.1021/ja4068639">10.1021/ja4068639</a>
  apa: Carrete, A., Shavel, A., Fontané, X., Montserrat, J., Fan, J., Ibáñez, M.,
    … Cabot, A. (2013). Antimony-based ligand exchange to promote crystallization
    in spray-deposited Cu2ZnSnSe4 solar cells. <i>Journal of the American Chemical
    Society</i>. American Chemical Society. <a href="https://doi.org/10.1021/ja4068639">https://doi.org/10.1021/ja4068639</a>
  chicago: Carrete, Alex, Alexey Shavel, Xavier Fontané, Joana Montserrat, Jiandong
    Fan, Maria Ibáñez, Edgardo Saucedo, Alejandro Pérez Rodríguez, and Andreu Cabot.
    “Antimony-Based Ligand Exchange to Promote Crystallization in Spray-Deposited
    Cu2ZnSnSe4 Solar Cells.” <i>Journal of the American Chemical Society</i>. American
    Chemical Society, 2013. <a href="https://doi.org/10.1021/ja4068639">https://doi.org/10.1021/ja4068639</a>.
  ieee: A. Carrete <i>et al.</i>, “Antimony-based ligand exchange to promote crystallization
    in spray-deposited Cu2ZnSnSe4 solar cells,” <i>Journal of the American Chemical
    Society</i>, vol. 135, no. 43. American Chemical Society, pp. 15982–15985, 2013.
  ista: Carrete A, Shavel A, Fontané X, Montserrat J, Fan J, Ibáñez M, Saucedo E,
    Pérez Rodríguez A, Cabot A. 2013. Antimony-based ligand exchange to promote crystallization
    in spray-deposited Cu2ZnSnSe4 solar cells. Journal of the American Chemical Society.
    135(43), 15982–15985.
  mla: Carrete, Alex, et al. “Antimony-Based Ligand Exchange to Promote Crystallization
    in Spray-Deposited Cu2ZnSnSe4 Solar Cells.” <i>Journal of the American Chemical
    Society</i>, vol. 135, no. 43, American Chemical Society, 2013, pp. 15982–85,
    doi:<a href="https://doi.org/10.1021/ja4068639">10.1021/ja4068639</a>.
  short: A. Carrete, A. Shavel, X. Fontané, J. Montserrat, J. Fan, M. Ibáñez, E. Saucedo,
    A. Pérez Rodríguez, A. Cabot, Journal of the American Chemical Society 135 (2013)
    15982–15985.
date_created: 2018-12-11T11:45:58Z
date_published: 2013-10-30T00:00:00Z
date_updated: 2021-01-12T07:43:57Z
day: '30'
doi: 10.1021/ja4068639
extern: '1'
intvolume: '       135'
issue: '43'
language:
- iso: eng
month: '10'
oa_version: None
page: 15982 - 15985
publication: Journal of the American Chemical Society
publication_status: published
publisher: American Chemical Society
publist_id: '7479'
quality_controlled: '1'
status: public
title: Antimony-based ligand exchange to promote crystallization in spray-deposited
  Cu2ZnSnSe4 solar cells
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 135
year: '2013'
...
---
_id: '352'
abstract:
- lang: eng
  text: The presence of organic ligands on the surface of colloidal nanoparticles
    strongly limits their performance in technological applications where charge carrier
    transfer/transport plays an important role. We use metal salts, matched with the
    nanoparticle composition, to eliminate the surface organic ligands without introducing
    extrinsic impurities in the final nanomaterial. The potential of the simple, general
    and scalable processes presented here is demonstrated by characterizing the thermoelectric
    properties of nanostructured Ag2Te produced by the bottom up assembly of Ag2Te
    nanocrystals. A 6-fold increase of the thermoelectric figure of merit of Ag2Te
    was obtained when organic ligands were displaced by AgNO3. The same procedure
    can enhance the performance of nanocrystals and nanocrystal-based devices in a
    broad range of applications, from photovoltaics and thermoelectrics to catalysis.
article_processing_charge: No
article_type: original
author:
- first_name: Doris
  full_name: Cadavid, Doris
  last_name: Cadavid
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Alexey
  full_name: Shavel, Alexey
  last_name: Shavel
- first_name: Oscar
  full_name: Durá, Oscar
  last_name: Durá
- first_name: Marco
  full_name: López De La Torre, Marco
  last_name: López De La Torre
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: 'Cadavid D, Ibáñez M, Shavel A, Durá O, López De La Torre M, Cabot A. Organic
    ligand displacement by metal salts to enhance nanoparticle functionality: Thermoelectric
    properties of Ag inf 2 inf Te. <i>Journal of Materials Chemistry A</i>. 2013;1(15):4864-4870.
    doi:<a href="https://doi.org/10.1039/C3TA01455J">10.1039/C3TA01455J</a>'
  apa: 'Cadavid, D., Ibáñez, M., Shavel, A., Durá, O., López De La Torre, M., &#38;
    Cabot, A. (2013). Organic ligand displacement by metal salts to enhance nanoparticle
    functionality: Thermoelectric properties of Ag inf 2 inf Te. <i>Journal of Materials
    Chemistry A</i>. Royal Society of Chemistry. <a href="https://doi.org/10.1039/C3TA01455J">https://doi.org/10.1039/C3TA01455J</a>'
  chicago: 'Cadavid, Doris, Maria Ibáñez, Alexey Shavel, Oscar Durá, Marco López De
    La Torre, and Andreu Cabot. “Organic Ligand Displacement by Metal Salts to Enhance
    Nanoparticle Functionality: Thermoelectric Properties of Ag Inf 2 Inf Te.” <i>Journal
    of Materials Chemistry A</i>. Royal Society of Chemistry, 2013. <a href="https://doi.org/10.1039/C3TA01455J">https://doi.org/10.1039/C3TA01455J</a>.'
  ieee: 'D. Cadavid, M. Ibáñez, A. Shavel, O. Durá, M. López De La Torre, and A. Cabot,
    “Organic ligand displacement by metal salts to enhance nanoparticle functionality:
    Thermoelectric properties of Ag inf 2 inf Te,” <i>Journal of Materials Chemistry
    A</i>, vol. 1, no. 15. Royal Society of Chemistry, pp. 4864–4870, 2013.'
  ista: 'Cadavid D, Ibáñez M, Shavel A, Durá O, López De La Torre M, Cabot A. 2013.
    Organic ligand displacement by metal salts to enhance nanoparticle functionality:
    Thermoelectric properties of Ag inf 2 inf Te. Journal of Materials Chemistry A.
    1(15), 4864–4870.'
  mla: 'Cadavid, Doris, et al. “Organic Ligand Displacement by Metal Salts to Enhance
    Nanoparticle Functionality: Thermoelectric Properties of Ag Inf 2 Inf Te.” <i>Journal
    of Materials Chemistry A</i>, vol. 1, no. 15, Royal Society of Chemistry, 2013,
    pp. 4864–70, doi:<a href="https://doi.org/10.1039/C3TA01455J">10.1039/C3TA01455J</a>.'
  short: D. Cadavid, M. Ibáñez, A. Shavel, O. Durá, M. López De La Torre, A. Cabot,
    Journal of Materials Chemistry A 1 (2013) 4864–4870.
date_created: 2018-12-11T11:45:58Z
date_published: 2013-02-13T00:00:00Z
date_updated: 2021-01-12T07:44:02Z
day: '13'
doi: 10.1039/C3TA01455J
extern: '1'
intvolume: '         1'
issue: '15'
language:
- iso: eng
month: '02'
oa_version: None
page: 4864 - 4870
publication: Journal of Materials Chemistry A
publication_status: published
publisher: Royal Society of Chemistry
publist_id: '7481'
quality_controlled: '1'
status: public
title: 'Organic ligand displacement by metal salts to enhance nanoparticle functionality:
  Thermoelectric properties of Ag inf 2 inf Te'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2013'
...
---
_id: '353'
abstract:
- lang: eng
  text: We report a procedure to prepare highly monodisperse copper telluride nanocubes,
    nanoplates, and nanorods. The procedure is based on the reaction of a copper salt
    with trioctylphosphine telluride in the presence of lithium bis(trimethylsilyl)amide
    and oleylamine. CuTe nanocrystals display a strong near-infrared optical absorption
    associated with localized surface plasmon resonances. We exploit this plasmon
    resonance for the design of surface-enhanced Raman scattering sensors for unconventional
    optical probes. Furthermore, we also report here our preliminary analysis of the
    use of CuTe nanocrystals as cytotoxic and photothermal agents.
acknowledgement: This research was supported by the European Regional Development
  Funds. J.A. and R.Z. acknowledge MAT2010-15138. Part of this work was supported
  by HFSP grant RGP0052/2012 to W.J.P.
article_processing_charge: No
article_type: original
author:
- first_name: Wenhua
  full_name: Li, Wenhua
  last_name: Li
- first_name: Reza
  full_name: Zamani, Reza
  last_name: Zamani
- first_name: Pilar
  full_name: Rivera Gil, Pilar
  last_name: Rivera Gil
- first_name: Beatriz
  full_name: Pelaz, Beatriz
  last_name: Pelaz
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Doris
  full_name: Cadavid, Doris
  last_name: Cadavid
- first_name: Alexey
  full_name: Shavel, Alexey
  last_name: Shavel
- first_name: Ramon
  full_name: Alvarez Puebla, Ramon
  last_name: Alvarez Puebla
- first_name: Wolfgang
  full_name: Parak, Wolfgang
  last_name: Parak
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: 'Li W, Zamani R, Rivera Gil P, et al. CuTe nanocrystals: Shape and size control,
    plasmonic properties, and use as SERS probes and photothermal agents. <i>Journal
    of the American Chemical Society</i>. 2013;135(19):7098-7101. doi:<a href="https://doi.org/10.1021/ja401428e">10.1021/ja401428e</a>'
  apa: 'Li, W., Zamani, R., Rivera Gil, P., Pelaz, B., Ibáñez, M., Cadavid, D., …
    Cabot, A. (2013). CuTe nanocrystals: Shape and size control, plasmonic properties,
    and use as SERS probes and photothermal agents. <i>Journal of the American Chemical
    Society</i>. American Chemical Society. <a href="https://doi.org/10.1021/ja401428e">https://doi.org/10.1021/ja401428e</a>'
  chicago: 'Li, Wenhua, Reza Zamani, Pilar Rivera Gil, Beatriz Pelaz, Maria Ibáñez,
    Doris Cadavid, Alexey Shavel, et al. “CuTe Nanocrystals: Shape and Size Control,
    Plasmonic Properties, and Use as SERS Probes and Photothermal Agents.” <i>Journal
    of the American Chemical Society</i>. American Chemical Society, 2013. <a href="https://doi.org/10.1021/ja401428e">https://doi.org/10.1021/ja401428e</a>.'
  ieee: 'W. Li <i>et al.</i>, “CuTe nanocrystals: Shape and size control, plasmonic
    properties, and use as SERS probes and photothermal agents,” <i>Journal of the
    American Chemical Society</i>, vol. 135, no. 19. American Chemical Society, pp.
    7098–7101, 2013.'
  ista: 'Li W, Zamani R, Rivera Gil P, Pelaz B, Ibáñez M, Cadavid D, Shavel A, Alvarez
    Puebla R, Parak W, Arbiol J, Cabot A. 2013. CuTe nanocrystals: Shape and size
    control, plasmonic properties, and use as SERS probes and photothermal agents.
    Journal of the American Chemical Society. 135(19), 7098–7101.'
  mla: 'Li, Wenhua, et al. “CuTe Nanocrystals: Shape and Size Control, Plasmonic Properties,
    and Use as SERS Probes and Photothermal Agents.” <i>Journal of the American Chemical
    Society</i>, vol. 135, no. 19, American Chemical Society, 2013, pp. 7098–101,
    doi:<a href="https://doi.org/10.1021/ja401428e">10.1021/ja401428e</a>.'
  short: W. Li, R. Zamani, P. Rivera Gil, B. Pelaz, M. Ibáñez, D. Cadavid, A. Shavel,
    R. Alvarez Puebla, W. Parak, J. Arbiol, A. Cabot, Journal of the American Chemical
    Society 135 (2013) 7098–7101.
date_created: 2018-12-11T11:45:59Z
date_published: 2013-04-30T00:00:00Z
date_updated: 2021-01-12T07:44:06Z
day: '30'
doi: 10.1021/ja401428e
extern: '1'
intvolume: '       135'
issue: '19'
language:
- iso: eng
month: '04'
oa_version: None
page: 7098 - 7101
publication: Journal of the American Chemical Society
publication_status: published
publisher: American Chemical Society
publist_id: '7480'
quality_controlled: '1'
status: public
title: 'CuTe nanocrystals: Shape and size control, plasmonic properties, and use as
  SERS probes and photothermal agents'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 135
year: '2013'
...
---
_id: '376'
abstract:
- lang: eng
  text: The compositional versatility of I2–II–IV–VI4 tetrahedrally-coordinated compounds
    allows for accommodating their functional properties to numerous technological
    applications. Among them, Cu2ZnSnSe4 is an emerging photovoltaic material and
    Cu2CdSnSe4 displays excellent thermoelectric properties. The third compound of
    this family, Cu2HgSnSe4, remains relatively unexplored. Herein, a synthetic route
    to produce Cu2HgSnSe4 nanoparticles with narrow size distribution and controlled
    composition is presented. Cu2HgSnSe4 nanoparticles were subsequently used as building
    blocks to produce bulk nanocrystalline materials, whose thermoelectric properties
    were analyzed. A very preliminary adjustment of the material composition yielded
    Seebeck coefficients up to 160 μV K−1, electrical conductivities close to 104
    S m−1 and thermal conductivities down to 0.5 W m−1 K−1.
author:
- first_name: Wenhua
  full_name: Li, Wenhua
  last_name: Li
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Reza
  full_name: Zamani, Reza
  last_name: Zamani
- first_name: Nuria
  full_name: García Castelló, Nuria
  last_name: García Castelló
- first_name: Grosse
  full_name: Stéphane, Grosse
  last_name: Stéphane
- first_name: Doris
  full_name: Cadavid, Doris
  last_name: Cadavid
- first_name: Joan
  full_name: Prades, Joan
  last_name: Prades
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: 'Li W, Ibáñez M, Zamani R, et al. Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric
    properties. <i>CrystEngComm</i>. 2013;44:8966-8971. doi:<a href="https://doi.org/10.1039/C3CE41583J">10.1039/C3CE41583J</a>'
  apa: 'Li, W., Ibáñez, M., Zamani, R., García Castelló, N., Stéphane, G., Cadavid,
    D., … Cabot, A. (2013). Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric
    properties. <i>CrystEngComm</i>. Royal Society of Chemistry. <a href="https://doi.org/10.1039/C3CE41583J">https://doi.org/10.1039/C3CE41583J</a>'
  chicago: 'Li, Wenhua, Maria Ibáñez, Reza Zamani, Nuria García Castelló, Grosse Stéphane,
    Doris Cadavid, Joan Prades, Jordi Arbiol, and Andreu Cabot. “Cu2HgSnSe4 Nanoparticles:
    Synthesis and Thermoelectric Properties.” <i>CrystEngComm</i>. Royal Society of
    Chemistry, 2013. <a href="https://doi.org/10.1039/C3CE41583J">https://doi.org/10.1039/C3CE41583J</a>.'
  ieee: 'W. Li <i>et al.</i>, “Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric
    properties,” <i>CrystEngComm</i>, vol. 44. Royal Society of Chemistry, pp. 8966–8971,
    2013.'
  ista: 'Li W, Ibáñez M, Zamani R, García Castelló N, Stéphane G, Cadavid D, Prades
    J, Arbiol J, Cabot A. 2013. Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric
    properties. CrystEngComm. 44, 8966–8971.'
  mla: 'Li, Wenhua, et al. “Cu2HgSnSe4 Nanoparticles: Synthesis and Thermoelectric
    Properties.” <i>CrystEngComm</i>, vol. 44, Royal Society of Chemistry, 2013, pp.
    8966–71, doi:<a href="https://doi.org/10.1039/C3CE41583J">10.1039/C3CE41583J</a>.'
  short: W. Li, M. Ibáñez, R. Zamani, N. García Castelló, G. Stéphane, D. Cadavid,
    J. Prades, J. Arbiol, A. Cabot, CrystEngComm 44 (2013) 8966–8971.
date_created: 2018-12-11T11:46:07Z
date_published: 2013-09-23T00:00:00Z
date_updated: 2021-01-12T07:52:00Z
day: '23'
doi: 10.1039/C3CE41583J
extern: '1'
intvolume: '        44'
language:
- iso: eng
month: '09'
oa_version: None
page: 8966 - 8971
publication: CrystEngComm
publication_status: published
publisher: Royal Society of Chemistry
publist_id: '7453'
quality_controlled: '1'
status: public
title: 'Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric properties'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 44
year: '2013'
...
---
_id: '378'
abstract:
- lang: eng
  text: Until recently, to prepare nanocrystals of a new material, scientists searched
    their shelves for the appropriate molecular precursors, surfactants, and solvents.
    They then optimized the reaction conditions for the atoms to self-assemble into
    monodisperse nanocrystals (1). This approach is being replaced by a simpler strategy,
    in which preformed nanocrystals serve as templates to produce nanoparticles with
    a different composition through chemical transformation. On page 964 of this issue,
    Oh et al. (2) report a powerful mechanism that allows the composition of oxide
    nanoparticles to be transformed in solution and at low temperatures.
article_processing_charge: No
author:
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Ibáñez M, Cabot A. All change for nanocrystals. <i>Science</i>. 2013;340(6135):935-936.
    doi:<a href="https://doi.org/10.1126/science.1239221">10.1126/science.1239221</a>
  apa: Ibáñez, M., &#38; Cabot, A. (2013). All change for nanocrystals. <i>Science</i>.
    American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1239221">https://doi.org/10.1126/science.1239221</a>
  chicago: Ibáñez, Maria, and Andreu Cabot. “All Change for Nanocrystals.” <i>Science</i>.
    American Association for the Advancement of Science, 2013. <a href="https://doi.org/10.1126/science.1239221">https://doi.org/10.1126/science.1239221</a>.
  ieee: M. Ibáñez and A. Cabot, “All change for nanocrystals,” <i>Science</i>, vol.
    340, no. 6135. American Association for the Advancement of Science, pp. 935–936,
    2013.
  ista: Ibáñez M, Cabot A. 2013. All change for nanocrystals. Science. 340(6135),
    935–936.
  mla: Ibáñez, Maria, and Andreu Cabot. “All Change for Nanocrystals.” <i>Science</i>,
    vol. 340, no. 6135, American Association for the Advancement of Science, 2013,
    pp. 935–36, doi:<a href="https://doi.org/10.1126/science.1239221">10.1126/science.1239221</a>.
  short: M. Ibáñez, A. Cabot, Science 340 (2013) 935–936.
date_created: 2018-12-11T11:46:08Z
date_published: 2013-05-24T00:00:00Z
date_updated: 2021-01-12T07:52:09Z
day: '24'
doi: 10.1126/science.1239221
extern: '1'
intvolume: '       340'
issue: '6135'
language:
- iso: eng
month: '05'
oa_version: None
page: 935 - 936
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '7451'
status: public
title: All change for nanocrystals
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 340
year: '2013'
...
---
_id: '450'
abstract:
- lang: eng
  text: Understanding the relative importance of heterosis and outbreeding depression
    over multiple generations is a key question in evolutionary biology and is essential
    for identifying appropriate genetic sources for population and ecosystem restoration.
    Here we use 2455 experimental crosses between 12 population pairs of the rare
    perennial plant Rutidosis leptorrhynchoides (Asteraceae) to investigate the multi-generational
    (F1, F2, F3) fitness outcomes of inter-population hybridization. We detected no
    evidence of outbreeding depression, with inter-population hybrids and backcrosses
    showing either similar fitness or significant heterosis for fitness components
    across the three generations. Variation in heterosis among population pairs was
    best explained by characteristics of the foreign source or home population, and
    was greatest when the source population was large, with high genetic diversity
    and low inbreeding, and the home population was small and inbred. Our results
    indicate that the primary consideration for maximizing progeny fitness following
    population augmentation or restoration is the use of seed from large, genetically
    diverse populations.
article_number: '2058'
author:
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- first_name: David
  full_name: Rowell, David
  last_name: Rowell
- first_name: Andrew
  full_name: Young, Andrew
  last_name: Young
citation:
  ama: Pickup M, Field D, Rowell D, Young A. Source population characteristics affect
    heterosis following genetic rescue of fragmented plant populations. <i>Proceedings
    of the Royal Society of London Series B Biological Sciences</i>. 2013;280(1750).
    doi:<a href="https://doi.org/10.1098/rspb.2012.2058">10.1098/rspb.2012.2058</a>
  apa: Pickup, M., Field, D., Rowell, D., &#38; Young, A. (2013). Source population
    characteristics affect heterosis following genetic rescue of fragmented plant
    populations. <i>Proceedings of the Royal Society of London Series B Biological
    Sciences</i>. Royal Society, The. <a href="https://doi.org/10.1098/rspb.2012.2058">https://doi.org/10.1098/rspb.2012.2058</a>
  chicago: Pickup, Melinda, David Field, David Rowell, and Andrew Young. “Source Population
    Characteristics Affect Heterosis Following Genetic Rescue of Fragmented Plant
    Populations.” <i>Proceedings of the Royal Society of London Series B Biological
    Sciences</i>. Royal Society, The, 2013. <a href="https://doi.org/10.1098/rspb.2012.2058">https://doi.org/10.1098/rspb.2012.2058</a>.
  ieee: M. Pickup, D. Field, D. Rowell, and A. Young, “Source population characteristics
    affect heterosis following genetic rescue of fragmented plant populations,” <i>Proceedings
    of the Royal Society of London Series B Biological Sciences</i>, vol. 280, no.
    1750. Royal Society, The, 2013.
  ista: Pickup M, Field D, Rowell D, Young A. 2013. Source population characteristics
    affect heterosis following genetic rescue of fragmented plant populations. Proceedings
    of the Royal Society of London Series B Biological Sciences. 280(1750), 2058.
  mla: Pickup, Melinda, et al. “Source Population Characteristics Affect Heterosis
    Following Genetic Rescue of Fragmented Plant Populations.” <i>Proceedings of the
    Royal Society of London Series B Biological Sciences</i>, vol. 280, no. 1750,
    2058, Royal Society, The, 2013, doi:<a href="https://doi.org/10.1098/rspb.2012.2058">10.1098/rspb.2012.2058</a>.
  short: M. Pickup, D. Field, D. Rowell, A. Young, Proceedings of the Royal Society
    of London Series B Biological Sciences 280 (2013).
date_created: 2018-12-11T11:46:32Z
date_published: 2013-01-07T00:00:00Z
date_updated: 2021-01-12T07:57:25Z
day: '07'
department:
- _id: NiBa
doi: 10.1098/rspb.2012.2058
external_id:
  pmid:
  - '23173202'
intvolume: '       280'
issue: '1750'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3574427/
month: '01'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: Proceedings of the Royal Society of London Series B Biological Sciences
publication_status: published
publisher: Royal Society, The
publist_id: '7372'
quality_controlled: '1'
status: public
title: Source population characteristics affect heterosis following genetic rescue
  of fragmented plant populations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 280
year: '2013'
...
---
_id: '476'
abstract:
- lang: eng
  text: 'Maternal exposure to infection occurring mid-gestation produces a three-fold
    increase in the risk of schizophrenia in the offspring. The critical initiating
    factor appears to be the maternal immune activation (MIA) that follows infection.
    This process can be induced in rodents by exposure of pregnant dams to the viral
    mimic Poly I:C, which triggers an immune response that results in structural,
    functional, behavioral, and electrophysiological phenotypes in the adult offspring
    that model those seen in schizophrenia. We used this model to explore the role
    of synchronization in brain neural networks, a process thought to be dysfunctional
    in schizophrenia and previously associated with positive, negative, and cognitive
    symptoms of schizophrenia. Exposure of pregnant dams to Poly I:C on GD15 produced
    an impairment in long-range neural synchrony in adult offspring between two regions
    implicated in schizophrenia pathology; the hippocampus and the medial prefrontal
    cortex (mPFC). This reduction in synchrony was ameliorated by acute doses of the
    antipsychotic clozapine. MIA animals have previously been shown to have impaired
    pre-pulse inhibition (PPI), a gold-standard measure of schizophrenia-like deficits
    in animal models. Our data showed that deficits in synchrony were positively correlated
    with the impairments in PPI. Subsequent analysis of LFP activity during the PPI
    response also showed that reduced coupling between the mPFC and the hippocampus
    following processing of the pre-pulse was associated with reduced PPI. The ability
    of the MIA intervention to model neurodevelopmental aspects of schizophrenia pathology
    provides a useful platform from which to investigate the ontogeny of aberrant
    synchronous processes. Further, the way in which the model expresses translatable
    deficits such as aberrant synchrony and reduced PPI will allow researchers to
    explore novel intervention strategies targeted to these changes. '
author:
- first_name: Desiree
  full_name: Dickerson, Desiree
  id: 444EB89E-F248-11E8-B48F-1D18A9856A87
  last_name: Dickerson
- first_name: David
  full_name: Bilkey, David
  last_name: Bilkey
citation:
  ama: 'Dickerson D, Bilkey D. Aberrant neural synchrony in the maternal immune activation
    model: Using translatable measures to explore targeted interventions. <i>Frontiers
    in Behavioral Neuroscience</i>. 2013;7(DEC). doi:<a href="https://doi.org/10.3389/fnbeh.2013.00217">10.3389/fnbeh.2013.00217</a>'
  apa: 'Dickerson, D., &#38; Bilkey, D. (2013). Aberrant neural synchrony in the maternal
    immune activation model: Using translatable measures to explore targeted interventions.
    <i>Frontiers in Behavioral Neuroscience</i>. Frontiers Research Foundation. <a
    href="https://doi.org/10.3389/fnbeh.2013.00217">https://doi.org/10.3389/fnbeh.2013.00217</a>'
  chicago: 'Dickerson, Desiree, and David Bilkey. “Aberrant Neural Synchrony in the
    Maternal Immune Activation Model: Using Translatable Measures to Explore Targeted
    Interventions.” <i>Frontiers in Behavioral Neuroscience</i>. Frontiers Research
    Foundation, 2013. <a href="https://doi.org/10.3389/fnbeh.2013.00217">https://doi.org/10.3389/fnbeh.2013.00217</a>.'
  ieee: 'D. Dickerson and D. Bilkey, “Aberrant neural synchrony in the maternal immune
    activation model: Using translatable measures to explore targeted interventions,”
    <i>Frontiers in Behavioral Neuroscience</i>, vol. 7, no. DEC. Frontiers Research
    Foundation, 2013.'
  ista: 'Dickerson D, Bilkey D. 2013. Aberrant neural synchrony in the maternal immune
    activation model: Using translatable measures to explore targeted interventions.
    Frontiers in Behavioral Neuroscience. 7(DEC).'
  mla: 'Dickerson, Desiree, and David Bilkey. “Aberrant Neural Synchrony in the Maternal
    Immune Activation Model: Using Translatable Measures to Explore Targeted Interventions.”
    <i>Frontiers in Behavioral Neuroscience</i>, vol. 7, no. DEC, Frontiers Research
    Foundation, 2013, doi:<a href="https://doi.org/10.3389/fnbeh.2013.00217">10.3389/fnbeh.2013.00217</a>.'
  short: D. Dickerson, D. Bilkey, Frontiers in Behavioral Neuroscience 7 (2013).
date_created: 2018-12-11T11:46:41Z
date_published: 2013-12-27T00:00:00Z
date_updated: 2021-01-12T08:00:53Z
day: '27'
ddc:
- '571'
department:
- _id: JoCs
doi: 10.3389/fnbeh.2013.00217
file:
- access_level: open_access
  checksum: cd7183121e56251176100ccac165c95c
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:15:10Z
  date_updated: 2020-07-14T12:46:35Z
  file_id: '5128'
  file_name: IST-2018-953-v1+1_2013_Dickerson_Aberrant_neural.pdf
  file_size: 530134
  relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: '         7'
issue: DEC
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Frontiers in Behavioral Neuroscience
publication_status: published
publisher: Frontiers Research Foundation
publist_id: '7346'
pubrep_id: '953'
quality_controlled: '1'
status: public
title: 'Aberrant neural synchrony in the maternal immune activation model: Using translatable
  measures to explore targeted interventions'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2013'
...
---
_id: '499'
abstract:
- lang: eng
  text: Exposure of an isogenic bacterial population to a cidal antibiotic typically
    fails to eliminate a small fraction of refractory cells. Historically, fractional
    killing has been attributed to infrequently dividing or nondividing &quot;persisters.&quot;
    Using microfluidic cultures and time-lapse microscopy, we found that Mycobacterium
    smegmatis persists by dividing in the presence of the drug isoniazid (INH). Although
    persistence in these studies was characterized by stable numbers of cells, this
    apparent stability was actually a dynamic state of balanced division and death.
    Single cells expressed catalase-peroxidase (KatG), which activates INH, in stochastic
    pulses that were negatively correlated with cell survival. These behaviors may
    reflect epigenetic effects, because KatG pulsing and death were correlated between
    sibling cells. Selection of lineages characterized by infrequent KatG pulsing
    could allow nonresponsive adaptation during prolonged drug exposure.
author:
- first_name: Yurichi
  full_name: Wakamoto, Yurichi
  last_name: Wakamoto
- first_name: Neraaj
  full_name: Dhar, Neraaj
  last_name: Dhar
- first_name: Remy P
  full_name: Chait, Remy P
  id: 3464AE84-F248-11E8-B48F-1D18A9856A87
  last_name: Chait
  orcid: 0000-0003-0876-3187
- first_name: Katrin
  full_name: Schneider, Katrin
  last_name: Schneider
- first_name: François
  full_name: Signorino Gelo, François
  last_name: Signorino Gelo
- first_name: Stanislas
  full_name: Leibler, Stanislas
  last_name: Leibler
- first_name: John
  full_name: Mckinney, John
  last_name: Mckinney
citation:
  ama: Wakamoto Y, Dhar N, Chait RP, et al. Dynamic persistence of antibiotic-stressed
    mycobacteria. <i>Science</i>. 2013;339(6115):91-95. doi:<a href="https://doi.org/10.1126/science.1229858">10.1126/science.1229858</a>
  apa: Wakamoto, Y., Dhar, N., Chait, R. P., Schneider, K., Signorino Gelo, F., Leibler,
    S., &#38; Mckinney, J. (2013). Dynamic persistence of antibiotic-stressed mycobacteria.
    <i>Science</i>. American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1229858">https://doi.org/10.1126/science.1229858</a>
  chicago: Wakamoto, Yurichi, Neraaj Dhar, Remy P Chait, Katrin Schneider, François
    Signorino Gelo, Stanislas Leibler, and John Mckinney. “Dynamic Persistence of
    Antibiotic-Stressed Mycobacteria.” <i>Science</i>. American Association for the
    Advancement of Science, 2013. <a href="https://doi.org/10.1126/science.1229858">https://doi.org/10.1126/science.1229858</a>.
  ieee: Y. Wakamoto <i>et al.</i>, “Dynamic persistence of antibiotic-stressed mycobacteria,”
    <i>Science</i>, vol. 339, no. 6115. American Association for the Advancement of
    Science, pp. 91–95, 2013.
  ista: Wakamoto Y, Dhar N, Chait RP, Schneider K, Signorino Gelo F, Leibler S, Mckinney
    J. 2013. Dynamic persistence of antibiotic-stressed mycobacteria. Science. 339(6115),
    91–95.
  mla: Wakamoto, Yurichi, et al. “Dynamic Persistence of Antibiotic-Stressed Mycobacteria.”
    <i>Science</i>, vol. 339, no. 6115, American Association for the Advancement of
    Science, 2013, pp. 91–95, doi:<a href="https://doi.org/10.1126/science.1229858">10.1126/science.1229858</a>.
  short: Y. Wakamoto, N. Dhar, R.P. Chait, K. Schneider, F. Signorino Gelo, S. Leibler,
    J. Mckinney, Science 339 (2013) 91–95.
date_created: 2018-12-11T11:46:48Z
date_published: 2013-01-04T00:00:00Z
date_updated: 2021-01-12T08:01:06Z
day: '04'
department:
- _id: CaGu
- _id: GaTk
doi: 10.1126/science.1229858
intvolume: '       339'
issue: '6115'
language:
- iso: eng
month: '01'
oa_version: None
page: 91 - 95
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '7321'
quality_controlled: '1'
scopus_import: 1
status: public
title: Dynamic persistence of antibiotic-stressed mycobacteria
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 339
year: '2013'
...
---
_id: '500'
abstract:
- lang: eng
  text: 'Background: Reassortment between the RNA segments encoding haemagglutinin
    (HA) and neuraminidase (NA), the major antigenic influenza proteins, produces
    viruses with novel HA and NA subtype combinations and has preceded the emergence
    of pandemic strains. It has been suggested that productive viral infection requires
    a balance in the level of functional activity of HA and NA, arising from their
    closely interacting roles in the viral life cycle, and that this functional balance
    could be mediated by genetic changes in the HA and NA. Here, we investigate how
    the selective pressure varies for H7 avian influenza HA on different NA subtype
    backgrounds. Results: By extending Bayesian stochastic mutational mapping methods
    to calculate the ratio of the rate of non-synonymous change to the rate of synonymous
    change (d N/d S), we found the average d N/d S across the avian influenza H7 HA1
    region to be significantly greater on an N2 NA subtype background than on an N1,
    N3 or N7 background. Observed differences in evolutionary rates of H7 HA on different
    NA subtype backgrounds could not be attributed to underlying differences between
    avian host species or virus pathogenicity. Examination of d N/d S values for each
    subtype on a site-by-site basis indicated that the elevated d N/d S on the N2
    NA background was a result of increased selection, rather than a relaxation of
    selective constraint. Conclusions: Our results are consistent with the hypothesis
    that reassortment exposes influenza HA to significant changes in selective pressure
    through genetic interactions with NA. Such epistatic effects might be explicitly
    accounted for in future models of influenza evolution.'
acknowledgement: "This work was supported by the Biotechnology and Biological Sciences
  Research Council, the Government of the Republic of Panama, the Interdisciplinary
  Centre for Human and Avian Influenza Research (www.ichair-flu.org) funded by the
  Scottish Funding Council, and the Institute for Science and Technology Austria.\r\nCC
  BY 2.0\r\n"
article_number: '222'
author:
- first_name: Melissa
  full_name: Ward, Melissa
  last_name: Ward
- first_name: Samantha
  full_name: Lycett, Samantha
  last_name: Lycett
- first_name: Dorita
  full_name: Avila, Dorita
  last_name: Avila
- first_name: Jonathan P
  full_name: Bollback, Jonathan P
  id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
  last_name: Bollback
  orcid: 0000-0002-4624-4612
- first_name: Andrew
  full_name: Leigh Brown, Andrew
  last_name: Leigh Brown
citation:
  ama: Ward M, Lycett S, Avila D, Bollback JP, Leigh Brown A. Evolutionary interactions
    between haemagglutinin and neuraminidase in avian influenza. <i>BMC Evolutionary
    Biology</i>. 2013;13(1). doi:<a href="https://doi.org/10.1186/1471-2148-13-222">10.1186/1471-2148-13-222</a>
  apa: Ward, M., Lycett, S., Avila, D., Bollback, J. P., &#38; Leigh Brown, A. (2013).
    Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza.
    <i>BMC Evolutionary Biology</i>. BioMed Central. <a href="https://doi.org/10.1186/1471-2148-13-222">https://doi.org/10.1186/1471-2148-13-222</a>
  chicago: Ward, Melissa, Samantha Lycett, Dorita Avila, Jonathan P Bollback, and
    Andrew Leigh Brown. “Evolutionary Interactions between Haemagglutinin and Neuraminidase
    in Avian Influenza.” <i>BMC Evolutionary Biology</i>. BioMed Central, 2013. <a
    href="https://doi.org/10.1186/1471-2148-13-222">https://doi.org/10.1186/1471-2148-13-222</a>.
  ieee: M. Ward, S. Lycett, D. Avila, J. P. Bollback, and A. Leigh Brown, “Evolutionary
    interactions between haemagglutinin and neuraminidase in avian influenza,” <i>BMC
    Evolutionary Biology</i>, vol. 13, no. 1. BioMed Central, 2013.
  ista: Ward M, Lycett S, Avila D, Bollback JP, Leigh Brown A. 2013. Evolutionary
    interactions between haemagglutinin and neuraminidase in avian influenza. BMC
    Evolutionary Biology. 13(1), 222.
  mla: Ward, Melissa, et al. “Evolutionary Interactions between Haemagglutinin and
    Neuraminidase in Avian Influenza.” <i>BMC Evolutionary Biology</i>, vol. 13, no.
    1, 222, BioMed Central, 2013, doi:<a href="https://doi.org/10.1186/1471-2148-13-222">10.1186/1471-2148-13-222</a>.
  short: M. Ward, S. Lycett, D. Avila, J.P. Bollback, A. Leigh Brown, BMC Evolutionary
    Biology 13 (2013).
date_created: 2018-12-11T11:46:49Z
date_published: 2013-10-09T00:00:00Z
date_updated: 2021-01-12T08:01:08Z
day: '09'
ddc:
- '576'
department:
- _id: JoBo
doi: 10.1186/1471-2148-13-222
file:
- access_level: open_access
  checksum: 52cf48a7c1794676ae8b0029573a84a9
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:08:59Z
  date_updated: 2020-07-14T12:46:36Z
  file_id: '4722'
  file_name: IST-2018-941-v1+1_2013_Bollback_Evolutionary_interactionspdf.pdf
  file_size: 1150052
  relation: main_file
file_date_updated: 2020-07-14T12:46:36Z
has_accepted_license: '1'
intvolume: '        13'
issue: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: BMC Evolutionary Biology
publication_status: published
publisher: BioMed Central
publist_id: '7320'
pubrep_id: '941'
quality_controlled: '1'
scopus_import: 1
status: public
title: Evolutionary interactions between haemagglutinin and neuraminidase in avian
  influenza
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2013'
...
---
_id: '501'
abstract:
- lang: eng
  text: 'All known species of extant tapirs are allopatric: 1 in southeastern Asia
    and 3 in Central and South America. The fossil record for tapirs, however, is
    much wider in geographical range, including Europe, Asia, and North and South
    America, going back to the late Oligocene, making the present distribution a relict
    of the original one. We here describe a new species of living Tapirus from the
    Amazon rain forest, the 1st since T. bairdii Gill, 1865, and the 1st new Perissodactyla
    in more than 100 years, from both morphological and molecular characters. It is
    shorter in stature than T. terrestris (Linnaeus, 1758) and has distinctive skull
    morphology, and it is basal to the clade formed by T. terrestris and T. pinchaque
    (Roulin, 1829). This highlights the unrecognized biodiversity in western Amazonia,
    where the biota faces increasing threats. Local peoples have long recognized our
    new species, suggesting a key role for traditional knowledge in understanding
    the biodiversity of the region.'
author:
- first_name: Mario
  full_name: Cozzuol, Mario
  last_name: Cozzuol
- first_name: Camila
  full_name: Clozato, Camila
  last_name: Clozato
- first_name: Elizete
  full_name: Holanda, Elizete
  last_name: Holanda
- first_name: Flávio
  full_name: Rodrigues, Flávio
  last_name: Rodrigues
- first_name: Samuel
  full_name: Nienow, Samuel
  last_name: Nienow
- first_name: Benoit
  full_name: De Thoisy, Benoit
  last_name: De Thoisy
- first_name: Rodrigo A
  full_name: Fernandes Redondo, Rodrigo A
  id: 409D5C96-F248-11E8-B48F-1D18A9856A87
  last_name: Fernandes Redondo
  orcid: 0000-0002-5837-2793
- first_name: Fabrício
  full_name: Santos, Fabrício
  last_name: Santos
citation:
  ama: Cozzuol M, Clozato C, Holanda E, et al. A new species of tapir from the Amazon.
    <i>Journal of Mammalogy</i>. 2013;94(6):1331-1345. doi:<a href="https://doi.org/10.1644/12-MAMM-A-169.1">10.1644/12-MAMM-A-169.1</a>
  apa: Cozzuol, M., Clozato, C., Holanda, E., Rodrigues, F., Nienow, S., De Thoisy,
    B., … Santos, F. (2013). A new species of tapir from the Amazon. <i>Journal of
    Mammalogy</i>. Oxford University Press. <a href="https://doi.org/10.1644/12-MAMM-A-169.1">https://doi.org/10.1644/12-MAMM-A-169.1</a>
  chicago: Cozzuol, Mario, Camila Clozato, Elizete Holanda, Flávio Rodrigues, Samuel
    Nienow, Benoit De Thoisy, Rodrigo A Fernandes Redondo, and Fabrício Santos. “A
    New Species of Tapir from the Amazon.” <i>Journal of Mammalogy</i>. Oxford University
    Press, 2013. <a href="https://doi.org/10.1644/12-MAMM-A-169.1">https://doi.org/10.1644/12-MAMM-A-169.1</a>.
  ieee: M. Cozzuol <i>et al.</i>, “A new species of tapir from the Amazon,” <i>Journal
    of Mammalogy</i>, vol. 94, no. 6. Oxford University Press, pp. 1331–1345, 2013.
  ista: Cozzuol M, Clozato C, Holanda E, Rodrigues F, Nienow S, De Thoisy B, Fernandes
    Redondo RA, Santos F. 2013. A new species of tapir from the Amazon. Journal of
    Mammalogy. 94(6), 1331–1345.
  mla: Cozzuol, Mario, et al. “A New Species of Tapir from the Amazon.” <i>Journal
    of Mammalogy</i>, vol. 94, no. 6, Oxford University Press, 2013, pp. 1331–45,
    doi:<a href="https://doi.org/10.1644/12-MAMM-A-169.1">10.1644/12-MAMM-A-169.1</a>.
  short: M. Cozzuol, C. Clozato, E. Holanda, F. Rodrigues, S. Nienow, B. De Thoisy,
    R.A. Fernandes Redondo, F. Santos, Journal of Mammalogy 94 (2013) 1331–1345.
date_created: 2018-12-11T11:46:49Z
date_published: 2013-12-01T00:00:00Z
date_updated: 2021-01-12T08:01:09Z
day: '01'
ddc:
- '570'
department:
- _id: JoBo
doi: 10.1644/12-MAMM-A-169.1
file:
- access_level: open_access
  checksum: 8007815078dccac21ecd1cf73a269dc6
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:12:59Z
  date_updated: 2020-07-14T12:46:36Z
  file_id: '4980'
  file_name: IST-2018-940-v1+1_2013_Redondo_A_new.pdf
  file_size: 1040765
  relation: main_file
file_date_updated: 2020-07-14T12:46:36Z
has_accepted_license: '1'
intvolume: '        94'
issue: '6'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 1331 - 1345
publication: Journal of Mammalogy
publication_status: published
publisher: Oxford University Press
publist_id: '7319'
pubrep_id: '940'
quality_controlled: '1'
scopus_import: 1
status: public
title: A new species of tapir from the Amazon
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 94
year: '2013'
...
---
_id: '502'
abstract:
- lang: eng
  text: 'Blind signatures allow users to obtain signatures on messages hidden from
    the signer; moreover, the signer cannot link the resulting message/signature pair
    to the signing session. This paper presents blind signature schemes, in which
    the number of interactions between the user and the signer is minimal and whose
    blind signatures are short. Our schemes are defined over bilinear groups and are
    proved secure in the common-reference-string model without random oracles and
    under standard assumptions: CDH and the decision-linear assumption. (We also give
    variants over asymmetric groups based on similar assumptions.) The blind signatures
    are Waters signatures, which consist of 2 group elements. Moreover, we instantiate
    partially blind signatures, where the message consists of a part hidden from the
    signer and a commonly known public part, and schemes achieving perfect blindness.
    We propose new variants of blind signatures, such as signer-friendly partially
    blind signatures, where the public part can be chosen by the signer without prior
    agreement, 3-party blind signatures, as well as blind signatures on multiple aggregated
    messages provided by independent sources. We also extend Waters signatures to
    non-binary alphabets by proving a new result on the underlying hash function. '
author:
- first_name: Olivier
  full_name: Blazy, Olivier
  last_name: Blazy
- first_name: Georg
  full_name: Fuchsbauer, Georg
  id: 46B4C3EE-F248-11E8-B48F-1D18A9856A87
  last_name: Fuchsbauer
- first_name: David
  full_name: Pointcheval, David
  last_name: Pointcheval
- first_name: Damien
  full_name: Vergnaud, Damien
  last_name: Vergnaud
citation:
  ama: Blazy O, Fuchsbauer G, Pointcheval D, Vergnaud D. Short blind signatures. <i>Journal
    of Computer Security</i>. 2013;21(5):627-661. doi:<a href="https://doi.org/10.3233/JCS-130477">10.3233/JCS-130477</a>
  apa: Blazy, O., Fuchsbauer, G., Pointcheval, D., &#38; Vergnaud, D. (2013). Short
    blind signatures. <i>Journal of Computer Security</i>. IOS Press. <a href="https://doi.org/10.3233/JCS-130477">https://doi.org/10.3233/JCS-130477</a>
  chicago: Blazy, Olivier, Georg Fuchsbauer, David Pointcheval, and Damien Vergnaud.
    “Short Blind Signatures.” <i>Journal of Computer Security</i>. IOS Press, 2013.
    <a href="https://doi.org/10.3233/JCS-130477">https://doi.org/10.3233/JCS-130477</a>.
  ieee: O. Blazy, G. Fuchsbauer, D. Pointcheval, and D. Vergnaud, “Short blind signatures,”
    <i>Journal of Computer Security</i>, vol. 21, no. 5. IOS Press, pp. 627–661, 2013.
  ista: Blazy O, Fuchsbauer G, Pointcheval D, Vergnaud D. 2013. Short blind signatures.
    Journal of Computer Security. 21(5), 627–661.
  mla: Blazy, Olivier, et al. “Short Blind Signatures.” <i>Journal of Computer Security</i>,
    vol. 21, no. 5, IOS Press, 2013, pp. 627–61, doi:<a href="https://doi.org/10.3233/JCS-130477">10.3233/JCS-130477</a>.
  short: O. Blazy, G. Fuchsbauer, D. Pointcheval, D. Vergnaud, Journal of Computer
    Security 21 (2013) 627–661.
date_created: 2018-12-11T11:46:50Z
date_published: 2013-11-22T00:00:00Z
date_updated: 2021-01-12T08:01:09Z
day: '22'
department:
- _id: KrPi
doi: 10.3233/JCS-130477
intvolume: '        21'
issue: '5'
language:
- iso: eng
month: '11'
oa_version: None
page: 627 - 661
publication: Journal of Computer Security
publication_status: published
publisher: IOS Press
publist_id: '7318'
quality_controlled: '1'
scopus_import: 1
status: public
title: Short blind signatures
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2013'
...
---
_id: '505'
abstract:
- lang: eng
  text: Alkyd resins are polyesters containing unsaturated fatty acids that are used
    as binding agents in paints and coatings. Chemical drying of these polyesters
    is based on heavy metal catalyzed cross-linking of the unsaturated fatty acid
    moieties. Among the heavy-metal catalysts, cobalt complexes are the most effective,
    yet they have been proven to be carcinogenic. Therefore, strategies to replace
    the cobalt-based catalyst by environmentally friendlier and less toxic alternatives
    are under development. Here, we demonstrate for the first time that a laccase-mediator
    system can effectively replace the heavy-metal catalyst and cross-link alkyd resins.
    Interestingly, the biocatalytic reaction does not only work in aqueous media,
    but also in a solid film, where enzyme diffusion is limited. Within the catalytic
    cycle, the mediator oxidizes the alkyd resin and is regenerated by the laccase,
    which is uniformly distributed within the drying film as evidenced by confocal
    laser scanning microscopy. During gradual build-up of molecular weight, there
    is a concomitant decrease of the oxygen content in the film. A new optical sensor
    to follow oxygen consumption during the cross-linking reaction was developed and
    validated with state of the art techniques. A remarkable feature is the low sample
    amount required, which allows faster screening of new catalysts.
acknowledgement: "This study was performed within the Austrian Centre of Indus-\r\ntrial
  Biotechnology ACIB and the COST Action 868. This work\r\nhas been supported by the
  Federal Ministry of Economy,\r\nFamily and Youth (BMWFJ), the Federal Ministry of
  Tra\r\nffi\r\nc,\r\nInnovation and Technology (bmvit), the Styrian Business\r\nPromotion
  Agency SFG, the Standortagentur Tirol and ZIT\r\n–\r\nTechnology  Agency  of  the
  \ City  of  Vienna  through  the\r\nCOMET-Funding Program managed by the Austrian
  Research\r\nPromotion Agency FFG. Dr Massimiliano Cardinale (Institute of\r\nEnvironmental
  Biotechnology, TU Graz) is gratefully acknowl-\r\nedged for technical support with
  the CLSM measurements."
author:
- first_name: Katrin
  full_name: Greimel, Katrin
  last_name: Greimel
- first_name: Veronika
  full_name: Perz, Veronika
  last_name: Perz
- first_name: Klaus
  full_name: Koren, Klaus
  id: 382FBD6A-F248-11E8-B48F-1D18A9856A87
  last_name: Koren
- first_name: Roland
  full_name: Feola, Roland
  last_name: Feola
- first_name: Armin
  full_name: Temel, Armin
  last_name: Temel
- first_name: Christian
  full_name: Sohar, Christian
  last_name: Sohar
- first_name: Enrique
  full_name: Herrero Acero, Enrique
  last_name: Herrero Acero
- first_name: Ingo
  full_name: Klimant, Ingo
  last_name: Klimant
- first_name: Georg
  full_name: Guebitz, Georg
  last_name: Guebitz
citation:
  ama: 'Greimel K, Perz V, Koren K, et al. Banning toxic heavy-metal catalysts from
    paints: Enzymatic cross-linking of alkyd resins. <i>Green Chemistry</i>. 2013;15(2):381-388.
    doi:<a href="https://doi.org/10.1039/c2gc36666e">10.1039/c2gc36666e</a>'
  apa: 'Greimel, K., Perz, V., Koren, K., Feola, R., Temel, A., Sohar, C., … Guebitz,
    G. (2013). Banning toxic heavy-metal catalysts from paints: Enzymatic cross-linking
    of alkyd resins. <i>Green Chemistry</i>. Royal Society of Chemistry. <a href="https://doi.org/10.1039/c2gc36666e">https://doi.org/10.1039/c2gc36666e</a>'
  chicago: 'Greimel, Katrin, Veronika Perz, Klaus Koren, Roland Feola, Armin Temel,
    Christian Sohar, Enrique Herrero Acero, Ingo Klimant, and Georg Guebitz. “Banning
    Toxic Heavy-Metal Catalysts from Paints: Enzymatic Cross-Linking of Alkyd Resins.”
    <i>Green Chemistry</i>. Royal Society of Chemistry, 2013. <a href="https://doi.org/10.1039/c2gc36666e">https://doi.org/10.1039/c2gc36666e</a>.'
  ieee: 'K. Greimel <i>et al.</i>, “Banning toxic heavy-metal catalysts from paints:
    Enzymatic cross-linking of alkyd resins,” <i>Green Chemistry</i>, vol. 15, no.
    2. Royal Society of Chemistry, pp. 381–388, 2013.'
  ista: 'Greimel K, Perz V, Koren K, Feola R, Temel A, Sohar C, Herrero Acero E, Klimant
    I, Guebitz G. 2013. Banning toxic heavy-metal catalysts from paints: Enzymatic
    cross-linking of alkyd resins. Green Chemistry. 15(2), 381–388.'
  mla: 'Greimel, Katrin, et al. “Banning Toxic Heavy-Metal Catalysts from Paints:
    Enzymatic Cross-Linking of Alkyd Resins.” <i>Green Chemistry</i>, vol. 15, no.
    2, Royal Society of Chemistry, 2013, pp. 381–88, doi:<a href="https://doi.org/10.1039/c2gc36666e">10.1039/c2gc36666e</a>.'
  short: K. Greimel, V. Perz, K. Koren, R. Feola, A. Temel, C. Sohar, E. Herrero Acero,
    I. Klimant, G. Guebitz, Green Chemistry 15 (2013) 381–388.
date_created: 2018-12-11T11:46:51Z
date_published: 2013-02-01T00:00:00Z
date_updated: 2021-01-12T08:01:11Z
day: '01'
department:
- _id: HaJa
doi: 10.1039/c2gc36666e
intvolume: '        15'
issue: '2'
language:
- iso: eng
month: '02'
oa_version: None
page: 381 - 388
publication: Green Chemistry
publication_status: published
publisher: Royal Society of Chemistry
publist_id: '7313'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Banning toxic heavy-metal catalysts from paints: Enzymatic cross-linking of
  alkyd resins'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2013'
...
---
_id: '507'
abstract:
- lang: eng
  text: Fertilization in flowering plants requires the temporal and spatial coordination
    of many developmental processes, including pollen production, anther dehiscence,
    ovule production, and pollen tube elongation. However, it remains elusive as to
    how this coordination occurs during reproduction. Here, we present evidence that
    endocytosis, involving heterotetrameric adaptor protein complex 2 (AP-2), plays
    a crucial role in fertilization. An Arabidopsis thaliana mutant ap2m displays
    multiple defects in pollen production and viability, as well as elongation of
    staminal filaments and pollen tubes, all of which are pivotal processes needed
    for fertilization. Of these abnormalities, the defects in elongation of staminal
    filaments and pollen tubes were partially rescued by exogenous auxin. Moreover,
    DR5rev:GFP (for green fluorescent protein) expression was greatly reduced in filaments
    and anthers in ap2m mutant plants. At the cellular level, ap2m mutants displayed
    defects in both endocytosis of N-(3-triethylammonium-propyl)-4- (4-diethylaminophenylhexatrienyl)
    pyridinium dibromide, a lypophilic dye used as an endocytosis marker, and polar
    localization of auxin-efflux carrier PIN FORMED2 (PIN2) in the stamen filaments.
    Moreover, these defects were phenocopied by treatment with Tyrphostin A23, an
    inhibitor of endocytosis. Based on these results, we propose that AP-2-dependent
    endocytosis plays a crucial role in coordinating the multiple developmental aspects
    of male reproductive organs by modulating cellular auxin level through the regulation
    of the amount and polarity of PINs.
author:
- first_name: Soo
  full_name: Kim, Soo
  last_name: Kim
- first_name: Zheng
  full_name: Xu, Zheng
  last_name: Xu
- first_name: Kyungyoung
  full_name: Song, Kyungyoung
  last_name: Song
- first_name: Dae
  full_name: Kim, Dae
  last_name: Kim
- first_name: Hyangju
  full_name: Kang, Hyangju
  last_name: Kang
- first_name: Ilka
  full_name: Reichardt, Ilka
  last_name: Reichardt
- first_name: Eun
  full_name: Sohn, Eun
  last_name: Sohn
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Gerd
  full_name: Juergens, Gerd
  last_name: Juergens
- first_name: Inhwan
  full_name: Hwang, Inhwan
  last_name: Hwang
citation:
  ama: Kim S, Xu Z, Song K, et al. Adaptor protein complex 2-mediated endocytosis
    is crucial for male reproductive organ development in arabidopsis. <i>Plant Cell</i>.
    2013;25(8):2970-2985. doi:<a href="https://doi.org/10.1105/tpc.113.114264">10.1105/tpc.113.114264</a>
  apa: Kim, S., Xu, Z., Song, K., Kim, D., Kang, H., Reichardt, I., … Hwang, I. (2013).
    Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive
    organ development in arabidopsis. <i>Plant Cell</i>. American Society of Plant
    Biologists. <a href="https://doi.org/10.1105/tpc.113.114264">https://doi.org/10.1105/tpc.113.114264</a>
  chicago: Kim, Soo, Zheng Xu, Kyungyoung Song, Dae Kim, Hyangju Kang, Ilka Reichardt,
    Eun Sohn, Jiří Friml, Gerd Juergens, and Inhwan Hwang. “Adaptor Protein Complex
    2-Mediated Endocytosis Is Crucial for Male Reproductive Organ Development in Arabidopsis.”
    <i>Plant Cell</i>. American Society of Plant Biologists, 2013. <a href="https://doi.org/10.1105/tpc.113.114264">https://doi.org/10.1105/tpc.113.114264</a>.
  ieee: S. Kim <i>et al.</i>, “Adaptor protein complex 2-mediated endocytosis is crucial
    for male reproductive organ development in arabidopsis,” <i>Plant Cell</i>, vol.
    25, no. 8. American Society of Plant Biologists, pp. 2970–2985, 2013.
  ista: Kim S, Xu Z, Song K, Kim D, Kang H, Reichardt I, Sohn E, Friml J, Juergens
    G, Hwang I. 2013. Adaptor protein complex 2-mediated endocytosis is crucial for
    male reproductive organ development in arabidopsis. Plant Cell. 25(8), 2970–2985.
  mla: Kim, Soo, et al. “Adaptor Protein Complex 2-Mediated Endocytosis Is Crucial
    for Male Reproductive Organ Development in Arabidopsis.” <i>Plant Cell</i>, vol.
    25, no. 8, American Society of Plant Biologists, 2013, pp. 2970–85, doi:<a href="https://doi.org/10.1105/tpc.113.114264">10.1105/tpc.113.114264</a>.
  short: S. Kim, Z. Xu, K. Song, D. Kim, H. Kang, I. Reichardt, E. Sohn, J. Friml,
    G. Juergens, I. Hwang, Plant Cell 25 (2013) 2970–2985.
date_created: 2018-12-11T11:46:52Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2021-01-12T08:01:12Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.113.114264
external_id:
  pmid:
  - '23975898'
intvolume: '        25'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3784592/
month: '08'
oa: 1
oa_version: Submitted Version
page: 2970 - 2985
pmid: 1
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '7312'
quality_controlled: '1'
scopus_import: 1
status: public
title: Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive
  organ development in arabidopsis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2013'
...
---
_id: '508'
abstract:
- lang: eng
  text: The phagocyte NADPH oxidase catalyzes the reduction of O2 to reactive oxygen
    species with microbicidal activity. It is composed of two membrane-spanning subunits,
    gp91-phox and p22-phox (encoded by CYBB and CYBA, respectively), and three cytoplasmic
    subunits, p40-phox, p47-phox, and p67-phox (encoded by NCF4, NCF1, and NCF2, respectively).
    Mutations in any of these genes can result in chronic granulomatous disease, a
    primary immunodeficiency characterized by recurrent infections. Using evolutionary
    mapping, we determined that episodes of adaptive natural selection have shaped
    the extracellular portion of gp91-phox during the evolution of mammals, which
    suggests that this region may have a function in host-pathogen interactions. On
    the basis of a resequencing analysis of approximately 35 kb of CYBB, CYBA, NCF2,
    and NCF4 in 102 ethnically diverse individuals (24 of African ancestry, 31 of
    European ancestry, 24 of Asian/Oceanians, and 23 US Hispanics), we show that the
    pattern of CYBA diversity is compatible with balancing natural selection, perhaps
    mediated by catalase-positive pathogens. NCF2 in Asian populations shows a pattern
    of diversity characterized by a differentiated haplotype structure. Our study
    provides insight into the role of pathogen-driven natural selection in an innate
    immune pathway and sheds light on the role of CYBA in endothelial, nonphagocytic
    NADPH oxidases, which are relevant in the pathogenesis of cardiovascular and other
    complex diseases.
author:
- first_name: Eduardo
  full_name: Tarazona Santos, Eduardo
  last_name: Tarazona Santos
- first_name: Moara
  full_name: Machado, Moara
  last_name: Machado
- first_name: Wagner
  full_name: Magalhães, Wagner
  last_name: Magalhães
- first_name: Renee
  full_name: Chen, Renee
  last_name: Chen
- first_name: Fernanda
  full_name: Lyon, Fernanda
  last_name: Lyon
- first_name: Laurie
  full_name: Burdett, Laurie
  last_name: Burdett
- first_name: Andrew
  full_name: Crenshaw, Andrew
  last_name: Crenshaw
- first_name: Cristina
  full_name: Fabbri, Cristina
  last_name: Fabbri
- first_name: Latife
  full_name: Pereira, Latife
  last_name: Pereira
- first_name: Laelia
  full_name: Pinto, Laelia
  last_name: Pinto
- first_name: Rodrigo A
  full_name: Fernandes Redondo, Rodrigo A
  id: 409D5C96-F248-11E8-B48F-1D18A9856A87
  last_name: Fernandes Redondo
  orcid: 0000-0002-5837-2793
- first_name: Ben
  full_name: Sestanovich, Ben
  last_name: Sestanovich
- first_name: Meredith
  full_name: Yeager, Meredith
  last_name: Yeager
- first_name: Stephen
  full_name: Chanock, Stephen
  last_name: Chanock
citation:
  ama: 'Tarazona Santos E, Machado M, Magalhães W, et al. Evolutionary dynamics of
    the human NADPH oxidase genes CYBB, CYBA, NCF2, and NCF4: Functional implications.
    <i>Molecular Biology and Evolution</i>. 2013;30(9):2157-2167. doi:<a href="https://doi.org/10.1093/molbev/mst119">10.1093/molbev/mst119</a>'
  apa: 'Tarazona Santos, E., Machado, M., Magalhães, W., Chen, R., Lyon, F., Burdett,
    L., … Chanock, S. (2013). Evolutionary dynamics of the human NADPH oxidase genes
    CYBB, CYBA, NCF2, and NCF4: Functional implications. <i>Molecular Biology and
    Evolution</i>. Oxford University Press. <a href="https://doi.org/10.1093/molbev/mst119">https://doi.org/10.1093/molbev/mst119</a>'
  chicago: 'Tarazona Santos, Eduardo, Moara Machado, Wagner Magalhães, Renee Chen,
    Fernanda Lyon, Laurie Burdett, Andrew Crenshaw, et al. “Evolutionary Dynamics
    of the Human NADPH Oxidase Genes CYBB, CYBA, NCF2, and NCF4: Functional Implications.”
    <i>Molecular Biology and Evolution</i>. Oxford University Press, 2013. <a href="https://doi.org/10.1093/molbev/mst119">https://doi.org/10.1093/molbev/mst119</a>.'
  ieee: 'E. Tarazona Santos <i>et al.</i>, “Evolutionary dynamics of the human NADPH
    oxidase genes CYBB, CYBA, NCF2, and NCF4: Functional implications,” <i>Molecular
    Biology and Evolution</i>, vol. 30, no. 9. Oxford University Press, pp. 2157–2167,
    2013.'
  ista: 'Tarazona Santos E, Machado M, Magalhães W, Chen R, Lyon F, Burdett L, Crenshaw
    A, Fabbri C, Pereira L, Pinto L, Fernandes Redondo RA, Sestanovich B, Yeager M,
    Chanock S. 2013. Evolutionary dynamics of the human NADPH oxidase genes CYBB,
    CYBA, NCF2, and NCF4: Functional implications. Molecular Biology and Evolution.
    30(9), 2157–2167.'
  mla: 'Tarazona Santos, Eduardo, et al. “Evolutionary Dynamics of the Human NADPH
    Oxidase Genes CYBB, CYBA, NCF2, and NCF4: Functional Implications.” <i>Molecular
    Biology and Evolution</i>, vol. 30, no. 9, Oxford University Press, 2013, pp.
    2157–67, doi:<a href="https://doi.org/10.1093/molbev/mst119">10.1093/molbev/mst119</a>.'
  short: E. Tarazona Santos, M. Machado, W. Magalhães, R. Chen, F. Lyon, L. Burdett,
    A. Crenshaw, C. Fabbri, L. Pereira, L. Pinto, R.A. Fernandes Redondo, B. Sestanovich,
    M. Yeager, S. Chanock, Molecular Biology and Evolution 30 (2013) 2157–2167.
date_created: 2018-12-11T11:46:52Z
date_published: 2013-09-01T00:00:00Z
date_updated: 2021-01-12T08:01:12Z
day: '01'
department:
- _id: JoBo
doi: 10.1093/molbev/mst119
external_id:
  pmid:
  - '23821607'
intvolume: '        30'
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3748357/
month: '09'
oa: 1
oa_version: Submitted Version
page: 2157 - 2167
pmid: 1
publication: Molecular Biology and Evolution
publication_status: published
publisher: Oxford University Press
publist_id: '7310'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Evolutionary dynamics of the human NADPH oxidase genes CYBB, CYBA, NCF2, and
  NCF4: Functional implications'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 30
year: '2013'
...
---
_id: '509'
abstract:
- lang: eng
  text: 'Clathrin-mediated endocytosis (CME) regulates many aspects of plant development,
    including hormone signaling and responses to environmental stresses. Despite the
    importance of this process, the machinery that regulates CME in plants is largely
    unknown. In mammals, the heterotetrameric ADAPTOR PROTEIN COMPLEX-2 (AP-2) is
    required for the formation of clathrin-coated vesicles at the plasma membrane
    (PM). Although the existence of AP-2 has been predicted in Arabidopsis thaliana,
    the biochemistry and functionality of the complex is still uncharacterized. Here,
    we identified all the subunits of the Arabidopsis AP-2 by tandem affinity purification
    and found that one of the large AP-2 subunits, AP2A1, localized at the PM and
    interacted with clathrin. Furthermore, endocytosis of the leucine-rich repeat
    receptor kinase, BRASSINOSTEROID INSENSITIVE1 (BRI1), was shown to depend on AP-2.
    Knockdown of the two Arabidopsis AP2A genes or overexpression of a dominant-negative
    version of the medium AP-2 subunit, AP2M, impaired BRI1 endocytosis and enhanced
    the brassinosteroid signaling. Our data reveal that the CME machinery in Arabidopsis
    is evolutionarily conserved and that AP-2 functions in receptormediated endocytosis. '
author:
- first_name: Simone
  full_name: Di Rubbo, Simone
  last_name: Di Rubbo
- first_name: Niloufer
  full_name: Irani, Niloufer
  last_name: Irani
- first_name: Soo
  full_name: Kim, Soo
  last_name: Kim
- first_name: Zheng
  full_name: Xu, Zheng
  last_name: Xu
- first_name: Astrid
  full_name: Gadeyne, Astrid
  last_name: Gadeyne
- first_name: Wim
  full_name: Dejonghe, Wim
  last_name: Dejonghe
- first_name: Isabelle
  full_name: Vanhoutte, Isabelle
  last_name: Vanhoutte
- first_name: Geert
  full_name: Persiau, Geert
  last_name: Persiau
- first_name: Dominique
  full_name: Eeckhout, Dominique
  last_name: Eeckhout
- first_name: Sibu
  full_name: Simon, Sibu
  id: 4542EF9A-F248-11E8-B48F-1D18A9856A87
  last_name: Simon
  orcid: 0000-0002-1998-6741
- first_name: Kyungyoung
  full_name: Song, Kyungyoung
  last_name: Song
- first_name: Jürgen
  full_name: Kleine Vehn, Jürgen
  last_name: Kleine Vehn
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Geert
  full_name: De Jaeger, Geert
  last_name: De Jaeger
- first_name: Daniël
  full_name: Van Damme, Daniël
  last_name: Van Damme
- first_name: Inhwan
  full_name: Hwang, Inhwan
  last_name: Hwang
- first_name: Eugenia
  full_name: Russinova, Eugenia
  last_name: Russinova
citation:
  ama: Di Rubbo S, Irani N, Kim S, et al. The clathrin adaptor complex AP-2 mediates
    endocytosis of brassinosteroid INSENSITIVE1 in arabidopsis. <i>Plant Cell</i>.
    2013;25(8):2986-2997. doi:<a href="https://doi.org/10.1105/tpc.113.114058">10.1105/tpc.113.114058</a>
  apa: Di Rubbo, S., Irani, N., Kim, S., Xu, Z., Gadeyne, A., Dejonghe, W., … Russinova,
    E. (2013). The clathrin adaptor complex AP-2 mediates endocytosis of brassinosteroid
    INSENSITIVE1 in arabidopsis. <i>Plant Cell</i>. American Society of Plant Biologists.
    <a href="https://doi.org/10.1105/tpc.113.114058">https://doi.org/10.1105/tpc.113.114058</a>
  chicago: Di Rubbo, Simone, Niloufer Irani, Soo Kim, Zheng Xu, Astrid Gadeyne, Wim
    Dejonghe, Isabelle Vanhoutte, et al. “The Clathrin Adaptor Complex AP-2 Mediates
    Endocytosis of Brassinosteroid INSENSITIVE1 in Arabidopsis.” <i>Plant Cell</i>.
    American Society of Plant Biologists, 2013. <a href="https://doi.org/10.1105/tpc.113.114058">https://doi.org/10.1105/tpc.113.114058</a>.
  ieee: S. Di Rubbo <i>et al.</i>, “The clathrin adaptor complex AP-2 mediates endocytosis
    of brassinosteroid INSENSITIVE1 in arabidopsis,” <i>Plant Cell</i>, vol. 25, no.
    8. American Society of Plant Biologists, pp. 2986–2997, 2013.
  ista: Di Rubbo S, Irani N, Kim S, Xu Z, Gadeyne A, Dejonghe W, Vanhoutte I, Persiau
    G, Eeckhout D, Simon S, Song K, Kleine Vehn J, Friml J, De Jaeger G, Van Damme
    D, Hwang I, Russinova E. 2013. The clathrin adaptor complex AP-2 mediates endocytosis
    of brassinosteroid INSENSITIVE1 in arabidopsis. Plant Cell. 25(8), 2986–2997.
  mla: Di Rubbo, Simone, et al. “The Clathrin Adaptor Complex AP-2 Mediates Endocytosis
    of Brassinosteroid INSENSITIVE1 in Arabidopsis.” <i>Plant Cell</i>, vol. 25, no.
    8, American Society of Plant Biologists, 2013, pp. 2986–97, doi:<a href="https://doi.org/10.1105/tpc.113.114058">10.1105/tpc.113.114058</a>.
  short: S. Di Rubbo, N. Irani, S. Kim, Z. Xu, A. Gadeyne, W. Dejonghe, I. Vanhoutte,
    G. Persiau, D. Eeckhout, S. Simon, K. Song, J. Kleine Vehn, J. Friml, G. De Jaeger,
    D. Van Damme, I. Hwang, E. Russinova, Plant Cell 25 (2013) 2986–2997.
date_created: 2018-12-11T11:46:52Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2021-01-12T08:01:13Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.113.114058
external_id:
  pmid:
  - '23975899'
intvolume: '        25'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3784593/
month: '08'
oa: 1
oa_version: Submitted Version
page: 2986 - 2997
pmid: 1
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '7311'
quality_controlled: '1'
scopus_import: 1
status: public
title: The clathrin adaptor complex AP-2 mediates endocytosis of brassinosteroid INSENSITIVE1
  in arabidopsis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2013'
...
---
_id: '511'
abstract:
- lang: eng
  text: The native auxin, indole-3-acetic acid (IAA), is a major regulator of plant
    growth and development. Its nonuniform distribution between cells and tissues
    underlies the spatiotemporal coordination of many developmental events and responses
    to environmental stimuli. The regulation of auxin gradients and the formation
    of auxin maxima/minima most likely involve the regulation of both metabolic and
    transport processes. In this article, we have demonstrated that 2-oxindole-3-acetic
    acid (oxIAA) is a major primary IAA catabolite formed in Arabidopsis thaliana
    root tissues. OxIAA had little biological activity and was formed rapidly and
    irreversibly in response to increases in auxin levels. We further showed that
    there is cell type-specific regulation of oxIAA levels in the Arabidopsis root
    apex. We propose that oxIAA is an important element in the regulation of output
    from auxin gradients and, therefore, in the regulation of auxin homeostasis and
    response mechanisms.
author:
- first_name: Aleš
  full_name: Pěnčík, Aleš
  last_name: Pěnčík
- first_name: Biljana
  full_name: Simonovik, Biljana
  last_name: Simonovik
- first_name: Sara
  full_name: Petersson, Sara
  last_name: Petersson
- first_name: Eva
  full_name: Henyková, Eva
  last_name: Henyková
- first_name: Sibu
  full_name: Simon, Sibu
  id: 4542EF9A-F248-11E8-B48F-1D18A9856A87
  last_name: Simon
  orcid: 0000-0002-1998-6741
- first_name: Kathleen
  full_name: Greenham, Kathleen
  last_name: Greenham
- first_name: Yi
  full_name: Zhang, Yi
  last_name: Zhang
- first_name: Mariusz
  full_name: Kowalczyk, Mariusz
  last_name: Kowalczyk
- first_name: Mark
  full_name: Estelle, Mark
  last_name: Estelle
- first_name: Eva
  full_name: Zažímalová, Eva
  last_name: Zažímalová
- first_name: Ondřej
  full_name: Novák, Ondřej
  last_name: Novák
- first_name: Göran
  full_name: Sandberg, Göran
  last_name: Sandberg
- first_name: Karin
  full_name: Ljung, Karin
  last_name: Ljung
citation:
  ama: Pěnčík A, Simonovik B, Petersson S, et al. Regulation of auxin homeostasis
    and gradients in Arabidopsis roots through the formation of the indole-3-acetic
    acid catabolite 2-oxindole-3-acetic acid. <i>Plant Cell</i>. 2013;25(10):3858-3870.
    doi:<a href="https://doi.org/10.1105/tpc.113.114421">10.1105/tpc.113.114421</a>
  apa: Pěnčík, A., Simonovik, B., Petersson, S., Henyková, E., Simon, S., Greenham,
    K., … Ljung, K. (2013). Regulation of auxin homeostasis and gradients in Arabidopsis
    roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic
    acid. <i>Plant Cell</i>. American Society of Plant Biologists. <a href="https://doi.org/10.1105/tpc.113.114421">https://doi.org/10.1105/tpc.113.114421</a>
  chicago: Pěnčík, Aleš, Biljana Simonovik, Sara Petersson, Eva Henyková, Sibu Simon,
    Kathleen Greenham, Yi Zhang, et al. “Regulation of Auxin Homeostasis and Gradients
    in Arabidopsis Roots through the Formation of the Indole-3-Acetic Acid Catabolite
    2-Oxindole-3-Acetic Acid.” <i>Plant Cell</i>. American Society of Plant Biologists,
    2013. <a href="https://doi.org/10.1105/tpc.113.114421">https://doi.org/10.1105/tpc.113.114421</a>.
  ieee: A. Pěnčík <i>et al.</i>, “Regulation of auxin homeostasis and gradients in
    Arabidopsis roots through the formation of the indole-3-acetic acid catabolite
    2-oxindole-3-acetic acid,” <i>Plant Cell</i>, vol. 25, no. 10. American Society
    of Plant Biologists, pp. 3858–3870, 2013.
  ista: Pěnčík A, Simonovik B, Petersson S, Henyková E, Simon S, Greenham K, Zhang
    Y, Kowalczyk M, Estelle M, Zažímalová E, Novák O, Sandberg G, Ljung K. 2013. Regulation
    of auxin homeostasis and gradients in Arabidopsis roots through the formation
    of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid. Plant Cell. 25(10),
    3858–3870.
  mla: Pěnčík, Aleš, et al. “Regulation of Auxin Homeostasis and Gradients in Arabidopsis
    Roots through the Formation of the Indole-3-Acetic Acid Catabolite 2-Oxindole-3-Acetic
    Acid.” <i>Plant Cell</i>, vol. 25, no. 10, American Society of Plant Biologists,
    2013, pp. 3858–70, doi:<a href="https://doi.org/10.1105/tpc.113.114421">10.1105/tpc.113.114421</a>.
  short: A. Pěnčík, B. Simonovik, S. Petersson, E. Henyková, S. Simon, K. Greenham,
    Y. Zhang, M. Kowalczyk, M. Estelle, E. Zažímalová, O. Novák, G. Sandberg, K. Ljung,
    Plant Cell 25 (2013) 3858–3870.
date_created: 2018-12-11T11:46:53Z
date_published: 2013-10-01T00:00:00Z
date_updated: 2021-01-12T08:01:15Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.113.114421
external_id:
  pmid:
  - '24163311'
intvolume: '        25'
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: www.doi.org/10.1105/tpc.113.114421
month: '10'
oa: 1
oa_version: Published Version
page: 3858 - 3870
pmid: 1
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '7309'
quality_controlled: '1'
scopus_import: 1
status: public
title: Regulation of auxin homeostasis and gradients in Arabidopsis roots through
  the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2013'
...
---
_id: '516'
abstract:
- lang: eng
  text: In plants, changes in local auxin concentrations can trigger a range of developmental
    processes as distinct tissues respond differently to the same auxin stimulus.
    However, little is known about how auxin is interpreted by individual cell types.
    We performed a transcriptomic analysis of responses to auxin within four distinct
    tissues of the Arabidopsis thaliana root and demonstrate that different cell types
    show competence for discrete responses. The majority of auxin‐responsive genes
    displayed a spatial bias in their induction or repression. The novel data set
    was used to examine how auxin influences tissue‐specific transcriptional regulation
    of cell‐identity markers. Additionally, the data were used in combination with
    spatial expression maps of the root to plot a transcriptomic auxin‐response gradient
    across the apical and basal meristem. The readout revealed a strong correlation
    for thousands of genes between the relative response to auxin and expression along
    the longitudinal axis of the root. This data set and comparative analysis provide
    a transcriptome‐level spatial breakdown of the response to auxin within an organ
    where this hormone mediates many aspects of development.
article_number: '688'
article_processing_charge: No
author:
- first_name: Bastiaan
  full_name: Bargmann, Bastiaan
  last_name: Bargmann
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Gabriel
  full_name: Krouk, Gabriel
  last_name: Krouk
- first_name: Tal
  full_name: Nawy, Tal
  last_name: Nawy
- first_name: Idan
  full_name: Efroni, Idan
  last_name: Efroni
- first_name: Eilon
  full_name: Shani, Eilon
  last_name: Shani
- first_name: Goh
  full_name: Choe, Goh
  last_name: Choe
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Dominique
  full_name: Bergmann, Dominique
  last_name: Bergmann
- first_name: Mark
  full_name: Estelle, Mark
  last_name: Estelle
- first_name: Kenneth
  full_name: Birnbaum, Kenneth
  last_name: Birnbaum
citation:
  ama: Bargmann B, Vanneste S, Krouk G, et al. A map of cell type‐specific auxin responses.
    <i>Molecular Systems Biology</i>. 2013;9(1). doi:<a href="https://doi.org/10.1038/msb.2013.40">10.1038/msb.2013.40</a>
  apa: Bargmann, B., Vanneste, S., Krouk, G., Nawy, T., Efroni, I., Shani, E., … Birnbaum,
    K. (2013). A map of cell type‐specific auxin responses. <i>Molecular Systems Biology</i>.
    Nature Publishing Group. <a href="https://doi.org/10.1038/msb.2013.40">https://doi.org/10.1038/msb.2013.40</a>
  chicago: Bargmann, Bastiaan, Steffen Vanneste, Gabriel Krouk, Tal Nawy, Idan Efroni,
    Eilon Shani, Goh Choe, et al. “A Map of Cell Type‐specific Auxin Responses.” <i>Molecular
    Systems Biology</i>. Nature Publishing Group, 2013. <a href="https://doi.org/10.1038/msb.2013.40">https://doi.org/10.1038/msb.2013.40</a>.
  ieee: B. Bargmann <i>et al.</i>, “A map of cell type‐specific auxin responses,”
    <i>Molecular Systems Biology</i>, vol. 9, no. 1. Nature Publishing Group, 2013.
  ista: Bargmann B, Vanneste S, Krouk G, Nawy T, Efroni I, Shani E, Choe G, Friml
    J, Bergmann D, Estelle M, Birnbaum K. 2013. A map of cell type‐specific auxin
    responses. Molecular Systems Biology. 9(1), 688.
  mla: Bargmann, Bastiaan, et al. “A Map of Cell Type‐specific Auxin Responses.” <i>Molecular
    Systems Biology</i>, vol. 9, no. 1, 688, Nature Publishing Group, 2013, doi:<a
    href="https://doi.org/10.1038/msb.2013.40">10.1038/msb.2013.40</a>.
  short: B. Bargmann, S. Vanneste, G. Krouk, T. Nawy, I. Efroni, E. Shani, G. Choe,
    J. Friml, D. Bergmann, M. Estelle, K. Birnbaum, Molecular Systems Biology 9 (2013).
date_created: 2018-12-11T11:46:55Z
date_published: 2013-09-10T00:00:00Z
date_updated: 2021-01-12T08:01:17Z
day: '10'
ddc:
- '581'
department:
- _id: JiFr
doi: 10.1038/msb.2013.40
file:
- access_level: open_access
  checksum: 9c4fbe793af4bb22b3fe50cc677a39bf
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:07:46Z
  date_updated: 2020-07-14T12:46:36Z
  file_id: '4644'
  file_name: IST-2018-936-v1+1_2008_Barton_A_map.pdf
  file_size: 3257692
  relation: main_file
file_date_updated: 2020-07-14T12:46:36Z
has_accepted_license: '1'
intvolume: '         9'
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '09'
oa: 1
oa_version: Published Version
publication: Molecular Systems Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '7303'
pubrep_id: '936'
quality_controlled: '1'
scopus_import: 1
status: public
title: A map of cell type‐specific auxin responses
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2013'
...
